gff-nostream 1.3.3 → 1.3.5

package/README.md

@@ -3,7 +3,7 @@
 [![Build Status](https://img.shields.io/github/actions/workflow/status/cmdcolin/gff-nostream/push.yml?branch=master&logo=github&style=for-the-badge)](https://github.com/cmdcolin/gff-nostream/actions?query=branch%3Amaster+workflow%3APush+)
 
 Parse GFF3 data. This is a simplified version of
-[@gmod/gff](https://github.com/GMOD/gff-js) for with just basic parsing and no
+[@gmod/gff](https://github.com/GMOD/gff-js) with just basic parsing and no
 node.js stream module usage
 
 ## Install

package/dist/api.d.ts

@@ -1,24 +1,4 @@
 import { GFF3Feature } from './util';
-/** Parser options */
-export interface ParseOptions {
-    /** Whether to resolve references to derives from features */
-    disableDerivesFromReferences?: boolean;
-    /** Text encoding of the input GFF3. default 'utf8' */
-    encoding?: BufferEncoding;
-    /** Whether to parse features, default true */
-    parseFeatures?: boolean;
-    /** Whether to parse directives, default false */
-    parseDirectives?: boolean;
-    /** Whether to parse comments, default false */
-    parseComments?: boolean;
-    /** Whether to parse sequences, default true */
-    parseSequences?: boolean;
-    /**
-     * Parse all features, directives, comments, and sequences. Overrides other
-     * parsing options. Default false.
-     */
-    parseAll?: boolean;
-}
 /**
  * Synchronously parse a string containing GFF3 and return an array of the
  * parsed items.

package/dist/api.js.map

@@ -1 +1 @@
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+{"version":3,"file":"api.js","sourceRoot":"","sources":["../src/api.ts"],"names":[],"mappings":";;;;;AAWA,0CAgBC;AA3BD,oDAA4B;AAG5B;;;;;;;GAOG;AACH,SAAgB,eAAe,CAAC,GAAW;IACzC,MAAM,KAAK,GAAkB,EAAE,CAAA;IAC/B,MAAM,MAAM,GAAG,IAAI,eAAM,CAAC;QACxB,eAAe,EAAE,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC;QACvC,4BAA4B,EAAE,IAAI;QAClC,aAAa,EAAE,GAAG,CAAC,EAAE;YACnB,MAAM,GAAG,CAAA;QACX,CAAC;KACF,CAAC,CAAA;IAEF,KAAK,MAAM,IAAI,IAAI,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC;QACtC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;IACtB,CAAC;IACD,MAAM,CAAC,MAAM,EAAE,CAAA;IAEf,OAAO,KAAK,CAAA;AACd,CAAC"}

package/dist/package.json

@@ -0,0 +1 @@
+{"type": "commonjs"}

package/dist/parse.js

@@ -15,13 +15,23 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.FASTAParser = void 0;
 const GFF3 = __importStar(require("./util"));

package/dist/parse.js.map

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package/esm/api.d.ts

@@ -1,24 +1,4 @@
 import { GFF3Feature } from './util';
-/** Parser options */
-export interface ParseOptions {
-    /** Whether to resolve references to derives from features */
-    disableDerivesFromReferences?: boolean;
-    /** Text encoding of the input GFF3. default 'utf8' */
-    encoding?: BufferEncoding;
-    /** Whether to parse features, default true */
-    parseFeatures?: boolean;
-    /** Whether to parse directives, default false */
-    parseDirectives?: boolean;
-    /** Whether to parse comments, default false */
-    parseComments?: boolean;
-    /** Whether to parse sequences, default true */
-    parseSequences?: boolean;
-    /**
-     * Parse all features, directives, comments, and sequences. Overrides other
-     * parsing options. Default false.
-     */
-    parseAll?: boolean;
-}
 /**
  * Synchronously parse a string containing GFF3 and return an array of the
  * parsed items.

package/esm/api.js.map

@@ -1 +1 @@
-{"version":3,"file":"api.js","sourceRoot":"","sources":["../src/api.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,SAAS,CAAA;AAiC5B;;;;;;;GAOG;AACH,MAAM,UAAU,eAAe,CAAC,GAAW;IACzC,MAAM,KAAK,GAAkB,EAAE,CAAA;IAC/B,MAAM,MAAM,GAAG,IAAI,MAAM,CAAC;QACxB,eAAe,EAAE,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC;QACvC,4BAA4B,EAAE,IAAI;QAClC,aAAa,EAAE,GAAG,CAAC,EAAE;YACnB,MAAM,GAAG,CAAA;QACX,CAAC;KACF,CAAC,CAAA;IAEF,KAAK,MAAM,IAAI,IAAI,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC;QACtC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;IACtB,CAAC;IACD,MAAM,CAAC,MAAM,EAAE,CAAA;IAEf,OAAO,KAAK,CAAA;AACd,CAAC"}
+{"version":3,"file":"api.js","sourceRoot":"","sources":["../src/api.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,SAAS,CAAA;AAG5B;;;;;;;GAOG;AACH,MAAM,UAAU,eAAe,CAAC,GAAW;IACzC,MAAM,KAAK,GAAkB,EAAE,CAAA;IAC/B,MAAM,MAAM,GAAG,IAAI,MAAM,CAAC;QACxB,eAAe,EAAE,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC;QACvC,4BAA4B,EAAE,IAAI;QAClC,aAAa,EAAE,GAAG,CAAC,EAAE;YACnB,MAAM,GAAG,CAAA;QACX,CAAC;KACF,CAAC,CAAA;IAEF,KAAK,MAAM,IAAI,IAAI,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC;QACtC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;IACtB,CAAC;IACD,MAAM,CAAC,MAAM,EAAE,CAAA;IAEf,OAAO,KAAK,CAAA;AACd,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "gff-nostream",
-  "version": "1.3.3",
+  "version": "1.3.5",
   "description": "utilities to read GFF3 data",
   "license": "MIT",
   "repository": "cmdcolin/gff-nostream",
@@ -25,6 +25,7 @@
     "prebuild": "npm run clean",
     "build:esm": "tsc --target es2018 --outDir esm",
     "build:es5": "tsc --target es2015 --module commonjs --outDir dist",
+    "postbuild:es5": "echo '{\"type\": \"commonjs\"}' > dist/package.json",
     "build": "npm run build:es5 && npm run build:esm",
     "prepublishOnly": "npm run test run && npm run build",
     "postversion": "git push --follow-tags"
@@ -40,13 +41,13 @@
     "@types/node": "^20.14.7",
     "@typescript-eslint/eslint-plugin": "^8.4.0",
     "@typescript-eslint/parser": "^8.4.0",
-    "@vitest/coverage-v8": "^2.0.5",
+    "@vitest/coverage-v8": "^3.0.1",
     "documentation": "^14.0.1",
     "eslint": "^9.9.1",
     "prettier": "^3.3.3",
     "rimraf": "^6.0.1",
     "typescript": "^5.5.4",
     "typescript-eslint": "^8.4.0",
-    "vitest": "^2.0.5"
+    "vitest": "^3.0.1"
   }
 }

package/src/api.ts

@@ -1,35 +1,5 @@
 import Parser from './parse'
-import {
-  GFF3Comment,
-  GFF3Directive,
-  GFF3Feature,
-  GFF3Item,
-  GFF3Sequence,
-  parseFeature,
-} from './util'
-
-/** Parser options */
-export interface ParseOptions {
-  /** Whether to resolve references to derives from features */
-  disableDerivesFromReferences?: boolean
-  /** Text encoding of the input GFF3. default 'utf8' */
-  encoding?: BufferEncoding
-  /** Whether to parse features, default true */
-  parseFeatures?: boolean
-  /** Whether to parse directives, default false */
-  parseDirectives?: boolean
-  /** Whether to parse comments, default false */
-  parseComments?: boolean
-  /** Whether to parse sequences, default true */
-  parseSequences?: boolean
-  /**
-   * Parse all features, directives, comments, and sequences. Overrides other
-   * parsing options. Default false.
-   */
-  parseAll?: boolean
-}
-
-type ParseOptionsProcessed = Required<Omit<ParseOptions, 'parseAll'>>
+import { GFF3Feature } from './util'
 
 /**
  * Synchronously parse a string containing GFF3 and return an array of the