npm - get-tbd - Versions diffs - 0.1.13 → 0.1.14 - Mend

get-tbd 0.1.13 → 0.1.14

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package/dist/cli.mjs.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"cli.mjs","names":["BUILD_VERSION","WorktreeMissingError","parseYaml","stringifyYaml","parsePath","execFileAsync","parseYaml","stringifyYaml","normalizePath","addCommand","removeCommand","parseYaml","stringifyYaml","stringifyYaml","parseYaml","parseYaml"],"sources":["../src/cli/lib/version.ts","../src/cli/lib/context.ts","../src/cli/lib/output.ts","../src/lib/paths.ts","../src/lib/tbd-format.ts","../src/file/config.ts","../src/cli/lib/errors.ts","../src/cli/lib/base-command.ts","../src/utils/file-utils.ts","../src/utils/gitignore-utils.ts","../src/utils/time-utils.ts","../src/file/git.ts","../src/cli/commands/init.ts","../src/lib/ids.ts","../src/file/storage.ts","../src/lib/sort.ts","../src/file/id-mapping.ts","../src/lib/priority.ts","../src/lib/project-paths.ts","../src/cli/commands/create.ts","../src/cli/lib/limit-utils.ts","../src/cli/lib/data-context.ts","../src/lib/comparison-chain.ts","../src/lib/status.ts","../src/lib/truncate.ts","../src/cli/lib/issue-format.ts","../src/cli/lib/tree-view.ts","../src/lib/spec-matching.ts","../src/cli/commands/list.ts","../src/cli/commands/show.ts","../src/cli/commands/update.ts","../src/cli/commands/close.ts","../src/cli/commands/reopen.ts","../src/cli/commands/ready.ts","../src/cli/commands/blocked.ts","../src/cli/commands/stale.ts","../src/cli/commands/label.ts","../src/cli/commands/dep.ts","../src/lib/sync-summary.ts","../src/file/github-fetch.ts","../src/file/doc-sync.ts","../src/cli/commands/sync.ts","../src/lib/format-utils.ts","../src/cli/commands/search.ts","../src/cli/lib/sections.ts","../src/lib/integration-paths.ts","../src/file/workspace.ts","../src/cli/commands/status.ts","../src/cli/commands/stats.ts","../src/cli/lib/diagnostics.ts","../src/cli/commands/doctor.ts","../src/cli/commands/config.ts","../src/cli/commands/attic.ts","../src/cli/commands/import.ts","../src/cli/commands/docs.ts","../src/cli/commands/closing.ts","../src/cli/commands/design.ts","../src/cli/commands/readme.ts","../src/cli/commands/uninstall.ts","../src/file/doc-cache.ts","../src/cli/commands/prime.ts","../src/cli/commands/skill.ts","../src/cli/lib/doc-prompts.ts","../src/file/doc-add.ts","../src/cli/commands/shortcut.ts","../src/cli/lib/doc-command-handler.ts","../src/cli/commands/guidelines.ts","../src/cli/commands/template.ts","../src/cli/lib/prefix-detection.ts","../src/cli/commands/setup.ts","../src/cli/commands/save.ts","../src/cli/commands/workspace.ts","../src/cli/cli.ts"],"sourcesContent":["/*\n CLI version detection\n \n Priority:\n * 1. Build-time injected __TBD_VERSION__ (production builds)\n * 2. TBD_DEV_VERSION env var (dev mode, set by pnpm tbd script)\n * 3. package.json version (fallback)\n \n No git dependency at runtime - git version is computed at build time\n * or by the dev script wrapper.\n /\n\nimport { createRequire } from 'node:module';\n\nimport { VERSION as BUILD_VERSION } from '../../index.js';\n\n/\n Get the CLI version.\n /\nfunction getVersion(): string {\n // 1. Build-time injected version (production)\n if (BUILD_VERSION !== 'development') {\n return BUILD_VERSION;\n }\n\n // 2. Dev mode env var (set by pnpm tbd script)\n if (process.env.TBD_DEV_VERSION) {\n return process.env.TBD_DEV_VERSION;\n }\n\n // 3. Fallback to package.json version\n const require = createRequire(import.meta.url);\n const pkg = require('../../../package.json') as { version: string };\n return pkg.version;\n}\n\n/\n CLI version - use this instead of importing VERSION directly from index.ts\n /\nexport const VERSION = getVersion();\n","/\n Command context and global options management.\n \n See: research-modern-typescript-cli-patterns.md#9-global-options\n /\n\nimport type { Command } from 'commander';\n\n/\n Output format options.\n /\nexport type OutputFormat = 'text' \| 'json';\n\n/\n Color output options.\n /\nexport type ColorOption = 'auto' \| 'always' \| 'never';\n\n/\n Global command context extracted from Commander options.\n /\nexport interface CommandContext {\n dryRun: boolean;\n verbose: boolean;\n quiet: boolean;\n json: boolean;\n color: ColorOption;\n nonInteractive: boolean;\n yes: boolean;\n sync: boolean;\n /* Debug mode: shows internal IDs alongside public IDs /\n debug: boolean;\n}\n\n/\n Extract command context from a Commander command.\n * Handles inheritance of global options through the command hierarchy.\n /\nexport function getCommandContext(command: Command): CommandContext {\n const opts = command.optsWithGlobals();\n const isCI = Boolean(process.env.CI);\n\n return {\n dryRun: opts.dryRun ?? false,\n verbose: opts.verbose ?? false,\n quiet: opts.quiet ?? false,\n json: opts.json ?? false,\n color: (opts.color as ColorOption) ?? 'auto',\n nonInteractive: opts.nonInteractive ?? (!process.stdin.isTTY \|\| isCI),\n yes: opts.yes ?? false,\n sync: opts.sync !== false, // --no-sync sets this to false\n debug: opts.debug ?? false,\n };\n}\n\n/\n Determine if output should be colorized based on options and environment.\n /\nexport function shouldColorize(colorOption: ColorOption): boolean {\n // NO_COLOR takes precedence (unless --color=always explicitly set)\n if (process.env.NO_COLOR && colorOption !== 'always') {\n return false;\n }\n if (colorOption === 'always') {\n return true;\n }\n if (colorOption === 'never') {\n return false;\n }\n return process.stdout.isTTY ?? false;\n}\n\n/\n Check if running in interactive mode.\n /\nexport function isInteractive(ctx: CommandContext): boolean {\n return !ctx.nonInteractive && process.stdin.isTTY === true && !process.env.CI;\n}\n","/\n OutputManager for dual-mode output (text + JSON).\n \n See: research-modern-typescript-cli-patterns.md#4-dual-output-mode-text--json\n /\n\nimport pc from 'picocolors';\nimport type { Command } from 'commander';\nimport { marked } from 'marked';\nimport { markedTerminal } from 'marked-terminal';\n\nimport type { CommandContext, ColorOption } from './context.js';\nimport { shouldColorize } from './context.js';\n\n/\n Standard icons for CLI output. Use these constants instead of hardcoded characters.\n \n Message icons (prefix messages with these):\n * - SUCCESS_ICON: ✓ for completed operations\n * - ERROR_ICON: ✗ for failures\n * - WARN_ICON: ⚠ for warnings\n * - NOTICE_ICON: • for notices/bullets\n \n Status icons (show issue status):\n * - OPEN_ICON: ○ for open issues\n * - IN_PROGRESS_ICON: ◐ for in-progress issues\n * - BLOCKED_ICON: ● for blocked issues\n * - CLOSED_ICON: ✓ for closed issues (same as SUCCESS_ICON)\n /\n\n/\n Format a section heading - ALL CAPS for consistent CLI output.\n * Per arch-cli-interface-design-system.md, section headings should be\n * ALL CAPS, bold, followed by blank line before content.\n \n @param text - The heading text to format\n * @returns Uppercase heading string\n /\nexport function formatHeading(text: string): string {\n return text.toUpperCase();\n}\n\nexport const ICONS = {\n // Message icons\n SUCCESS: '✓', // U+2713\n ERROR: '✗', // U+2717\n WARN: '⚠', // U+26A0\n NOTICE: '•', // U+2022\n\n // Status icons\n OPEN: '○', // U+25CB\n IN_PROGRESS: '◐', // U+25D0\n BLOCKED: '●', // U+25CF\n CLOSED: '✓', // U+2713 (same as SUCCESS)\n DEFERRED: '○', // U+25CB (same as OPEN)\n} as const;\n\n/\n Pre-parse argv to determine color setting before Commander parses options.\n * This is needed because help output happens before full option parsing.\n /\nexport function getColorOptionFromArgv(): ColorOption {\n const colorArg = process.argv.find((arg) => arg.startsWith('--color='));\n if (colorArg) {\n const value = colorArg.split('=')[1];\n if (value === 'always' \|\| value === 'never' \|\| value === 'auto') {\n return value;\n }\n }\n // Check for --color followed by value\n const colorIdx = process.argv.indexOf('--color');\n if (colorIdx !== -1 && process.argv[colorIdx + 1]) {\n const value = process.argv[colorIdx + 1];\n if (value === 'always' \|\| value === 'never' \|\| value === 'auto') {\n return value;\n }\n }\n return 'auto';\n}\n\n/\n Maximum width for help text and formatted output. We cap at 88 characters\n * for readability, but use narrower if the terminal is smaller.\n /\nexport const MAX_HELP_WIDTH = 88;\n\n/\n Get terminal width capped at MAX_HELP_WIDTH.\n * Use this for all formatted CLI output to ensure consistent width handling.\n /\nexport function getTerminalWidth(): number {\n return Math.min(MAX_HELP_WIDTH, process.stdout.columns ?? 80);\n}\n\n/\n Create colored help configuration for Commander.js.\n * Uses Commander's built-in configureHelp() style functions (requires v14+).\n \n @param colorOption - Color option to determine if colors should be enabled\n * @returns Help configuration object for program.configureHelp()\n /\nexport function createColoredHelpConfig(colorOption: ColorOption = 'auto') {\n const colors = pc.createColors(shouldColorize(colorOption));\n\n return {\n helpWidth: getTerminalWidth(),\n styleTitle: (str: string) => colors.bold(colors.cyan(str)),\n styleCommandText: (str: string) => colors.green(str),\n styleOptionText: (str: string) => colors.yellow(str),\n showGlobalOptions: true,\n };\n}\n\n/\n Create the help epilog text with color.\n * Includes \"Getting Started\" section per spec.\n \n @param colorOption - Color option to determine if colors should be enabled\n * @returns Colored epilog string\n /\nexport function createHelpEpilog(colorOption: ColorOption = 'auto'): string {\n const colors = pc.createColors(shouldColorize(colorOption));\n const lines = [\n colors.bold('Getting Started:'),\n ` ${colors.green('npm install -g get-tbd@latest && tbd setup --auto --prefix=<name>')}`,\n '',\n ' This initializes tbd and configures your coding agents automatically.',\n ` For interactive setup: ${colors.dim('tbd setup --interactive')}`,\n ` For manual control: ${colors.dim('tbd init --help')}`,\n '',\n colors.bold('Orientation:'),\n ` For workflow guidance, run: ${colors.green('tbd prime')}`,\n '',\n colors.blue('For more on tbd, see: https://github.com/jlevy/tbd'),\n ];\n return lines.join('\\n');\n}\n\n/\n Configure Commander.js with colored help text.\n * Call this on the program before adding commands.\n /\nexport function configureColoredHelp(program: Command): Command {\n const colorOption = getColorOptionFromArgv();\n return program.configureHelp(createColoredHelpConfig(colorOption));\n}\n\n/\n Color utilities with conditional colorization.\n \n Uses picocolors' createColors() for manual color support control,\n * which is the recommended approach per picocolors documentation.\n * This allows --color=always to work even when stdout is not a TTY.\n /\nexport function createColors(colorOption: ColorOption) {\n const enabled = shouldColorize(colorOption);\n\n // Use picocolors' createColors() for proper manual control\n // This overrides picocolors' automatic TTY detection\n const colors = pc.createColors(enabled);\n\n return {\n // Status colors\n success: colors.green,\n error: colors.red,\n warn: colors.yellow,\n info: colors.blue,\n\n // Text formatting\n bold: colors.bold,\n dim: colors.dim,\n italic: colors.italic,\n underline: colors.underline,\n\n // Semantic colors\n id: colors.cyan,\n label: colors.magenta,\n path: colors.blue,\n };\n}\n\n/\n Render Markdown to colorized terminal output.\n \n Uses marked-terminal for colorized output when colors are enabled,\n * falls back to plain Markdown when colors are disabled or piped.\n * Respects the --color option and TTY detection.\n \n @param content - Markdown string to render\n * @param colorOption - Color option to determine if colors should be enabled\n * @returns Rendered string (colorized or plain)\n /\nexport function renderMarkdown(content: string, colorOption: ColorOption = 'auto'): string {\n const useColors = shouldColorize(colorOption);\n\n if (!useColors) {\n // Return plain markdown when colors are disabled\n return content;\n }\n\n // Configure marked with terminal renderer for this parse\n // Note: @types/marked-terminal is outdated; markedTerminal returns MarkedExtension in v7+\n // but types still claim it returns TerminalRenderer. Cast to work around this.\n marked.use(\n markedTerminal({\n width: getTerminalWidth(),\n reflowText: true,\n }) as unknown as Parameters<typeof marked.use>[0],\n );\n\n // marked.parse returns string with sync renderer\n return marked.parse(content) as string;\n}\n\n/\n Spinner interface for progress indication.\n /\nexport interface Spinner {\n message(msg: string): void;\n stop(msg?: string): void;\n}\n\n/\n No-op spinner for non-TTY or quiet mode.\n /\nconst noopSpinner: Spinner = {\n message: () => {},\n stop: () => {},\n};\n\n/\n OutputManager handles all CLI output with format switching.\n /\nexport class OutputManager {\n private ctx: CommandContext;\n private colors: ReturnType<typeof createColors>;\n\n constructor(ctx: CommandContext) {\n this.ctx = ctx;\n this.colors = createColors(ctx.color);\n }\n\n /\n Output structured data - always goes to stdout.\n * In JSON mode, outputs JSON. In text mode, calls the formatter.\n /\n data<T>(data: T, textFormatter?: (data: T) => void): void {\n if (this.ctx.json) {\n console.log(JSON.stringify(data, null, 2));\n } else if (textFormatter) {\n textFormatter(data);\n }\n }\n\n /\n Output success message - text mode only, stdout.\n * Suppressed by --quiet and --json.\n /\n success(message: string): void {\n if (!this.ctx.json && !this.ctx.quiet) {\n console.log(this.colors.success(`${ICONS.SUCCESS} ${message}`));\n }\n }\n\n /\n Output notice message - noteworthy events during normal operation.\n * Blue bullet, shown at default level. Suppressed by --quiet and --json.\n /\n notice(message: string): void {\n if (!this.ctx.json && !this.ctx.quiet) {\n console.log(this.colors.info(`${ICONS.NOTICE} ${message}`));\n }\n }\n\n /\n Output info message - operational progress.\n * Requires --verbose or --debug. Suppressed by --json.\n /\n info(message: string): void {\n if (!this.ctx.json && (this.ctx.verbose \|\| this.ctx.debug)) {\n console.error(this.colors.dim(message));\n }\n }\n\n /\n Output warning - issues that didn't stop operation.\n * Yellow warning icon, stderr. Suppressed by --quiet.\n /\n warn(message: string): void {\n if (this.ctx.json) {\n console.error(JSON.stringify({ warning: message }));\n } else if (!this.ctx.quiet) {\n console.error(this.colors.warn(`${ICONS.WARN} ${message}`));\n }\n }\n\n /\n Output error - failures that stop operation.\n * Red X icon, always shown (even in --quiet), stderr.\n /\n error(message: string, err?: Error): void {\n if (this.ctx.json) {\n console.error(JSON.stringify({ error: message, details: err?.message }));\n } else {\n console.error(this.colors.error(`${ICONS.ERROR} ${message}`));\n if (this.ctx.verbose && err?.stack) {\n console.error(this.colors.dim(err.stack));\n }\n }\n }\n\n /\n Output command being executed - shows external commands.\n * Requires --verbose or --debug. Suppressed by --json.\n /\n command(cmd: string, args?: string[]): void {\n if (!this.ctx.json && (this.ctx.verbose \|\| this.ctx.debug)) {\n const fullCmd = args ? `${cmd} ${args.join(' ')}` : cmd;\n console.error(this.colors.dim(`> ${fullCmd}`));\n }\n }\n\n /\n Output debug message - internal state for troubleshooting.\n * Requires --debug only (not --verbose). Suppressed by --json.\n /\n debug(message: string): void {\n if (this.ctx.debug && !this.ctx.json) {\n console.error(this.colors.dim(`[debug] ${message}`));\n }\n }\n\n /\n Output dry-run indication.\n /\n dryRun(message: string, details?: object): void {\n if (this.ctx.json) {\n console.log(JSON.stringify({ dryRun: true, action: message, ...details }));\n } else {\n console.log(this.colors.warn(`[DRY-RUN] ${message}`));\n if (details && (this.ctx.verbose \|\| this.ctx.debug)) {\n console.log(this.colors.dim(JSON.stringify(details, null, 2)));\n }\n }\n }\n\n /\n Output a table with headers and rows.\n * Headers are dimmed. Rows are formatted with consistent column widths.\n * Suppressed in JSON mode.\n \n @param headers - Array of column headers with widths\n * @param rows - Array of row data arrays (each row = array of strings)\n /\n table(\n headers: { label: string; width: number }[],\n rows: (string \| { value: string; color?: (s: string) => string })[][],\n ): void {\n if (this.ctx.json) return;\n\n // Output header row\n const headerLine = headers.map((h) => h.label.padEnd(h.width)).join('');\n console.log(this.colors.dim(headerLine));\n\n // Output data rows\n for (const row of rows) {\n const cells = row.map((cell, i) => {\n const width = headers[i]?.width ?? 0;\n if (typeof cell === 'string') {\n return cell.padEnd(width);\n }\n // Cell with custom color\n const paddedValue = cell.value.padEnd(width);\n return cell.color ? cell.color(paddedValue) : paddedValue;\n });\n console.log(cells.join(''));\n }\n }\n\n /\n Output a bulleted list.\n * Uses NOTICE icon (•) as bullet. Suppressed in JSON mode.\n \n @param items - Array of items to list\n * @param options - Optional indent level (default 0)\n /\n list(items: string[], options?: { indent?: number }): void {\n if (this.ctx.json) return;\n\n const indent = ' '.repeat(options?.indent ?? 0);\n for (const item of items) {\n console.log(`${indent}${ICONS.NOTICE} ${item}`);\n }\n }\n\n /\n Output a count summary in standard format.\n * Format: \"N item(s)\" with dim color. Suppressed in JSON mode.\n \n @param count - The count to display\n * @param singular - Singular form of the item (e.g., \"issue\")\n * @param plural - Optional plural form (defaults to singular + \"s\")\n /\n count(count: number, singular: string, plural?: string): void {\n if (this.ctx.json) return;\n\n const pluralForm = plural ?? `${singular}s`;\n const label = count === 1 ? singular : pluralForm;\n console.log(this.colors.dim(`${count} ${label}`));\n }\n\n /\n Create a spinner for progress indication.\n * Returns no-op in JSON/quiet mode or non-TTY.\n /\n spinner(message: string): Spinner {\n // Never show spinners in JSON mode, quiet mode, or non-TTY\n if (this.ctx.json \|\| this.ctx.quiet \|\| !process.stderr.isTTY) {\n return noopSpinner;\n }\n\n // Simple inline spinner (no external dependency for now)\n let frame = 0;\n const frames = ['⠋', '⠙', '⠹', '⠸', '⠼', '⠴', '⠦', '⠧', '⠇', '⠏'];\n let currentMessage = message;\n\n const spinnerColor = this.colors.info;\n const write = () => {\n process.stderr.write(`\\r${spinnerColor(frames[frame] ?? '⠋')} ${currentMessage}`);\n frame = (frame + 1) % frames.length;\n };\n\n write();\n const interval = setInterval(write, 80);\n\n return {\n message: (msg: string) => {\n currentMessage = msg;\n },\n stop: (msg?: string) => {\n clearInterval(interval);\n process.stderr.write('\\r' + ' '.repeat(currentMessage.length + 3) + '\\r');\n if (msg) {\n console.error(msg);\n }\n },\n };\n }\n\n /\n Get colors instance for direct use.\n /\n getColors() {\n return this.colors;\n }\n\n /\n Check if quiet mode is enabled.\n /\n isQuiet(): boolean {\n return this.ctx.quiet;\n }\n}\n\n// ============================================================================\n// Component Helper Functions\n// ============================================================================\n\n/\n Format command header with version.\n * Used at start of orientation commands (status, doctor, stats).\n \n @example formatCommandHeader('tbd', '0.1.9', colors) → \"tbd v0.1.9\" (bold name)\n /\nexport function formatCommandHeader(\n name: string,\n version: string,\n colors: ReturnType<typeof createColors>,\n): string {\n return `${colors.bold(name)} v${version}`;\n}\n\n/\n Format key-value line with dim key.\n * Used for configuration display.\n \n @example formatKeyValue('Sync branch', 'tbd-sync', colors) → \"Sync branch: tbd-sync\"\n /\nexport function formatKeyValue(\n key: string,\n value: string,\n colors: ReturnType<typeof createColors>,\n): string {\n return `${colors.dim(key + ':')} ${value}`;\n}\n\n/\n Format aligned statistic block.\n * Returns array of formatted lines with aligned values.\n \n @param stats - Array of {label, value} pairs\n * @param colors - Color functions (unused but kept for consistency)\n * @returns Array of formatted lines\n \n @example\n * formatStatBlock([{label: 'Ready', value: 12}, {label: 'In progress', value: 4}], colors)\n * → [' Ready: 12', ' In progress: 4']\n /\nexport function formatStatBlock(\n stats: { label: string; value: number \| string }[],\n _colors: ReturnType<typeof createColors>,\n): string[] {\n const maxLabelLen = Math.max(...stats.map((s) => s.label.length));\n\n return stats.map((stat) => {\n const padding = ' '.repeat(maxLabelLen - stat.label.length + 1);\n return ` ${stat.label}:${padding}${stat.value}`;\n });\n}\n\n/\n Format multi-line warning block.\n * Returns array of lines for a warning with headline, details, and suggestion.\n \n @param headline - Warning headline (shown with ⚠ icon)\n * @param details - Detail lines\n * @param suggestion - Optional suggestion with command (bolded)\n * @param colors - Color functions\n * @returns Array of formatted lines\n /\nexport function formatWarningBlock(\n headline: string,\n details: string[],\n suggestion: { text: string; command: string } \| undefined,\n colors: ReturnType<typeof createColors>,\n): string[] {\n const lines: string[] = [];\n\n // Headline with warning icon\n lines.push(`${colors.warn(ICONS.WARN)} ${headline}`);\n\n // Detail lines\n for (const detail of details) {\n lines.push(detail);\n }\n\n // Suggestion with bolded command\n if (suggestion) {\n lines.push(`${suggestion.text} ${colors.bold(suggestion.command)}`);\n }\n\n return lines;\n}\n\n/\n Format footer with command suggestions.\n * Returns a formatted string like \"Use 'tbd stats' for statistics, 'tbd doctor' for health checks.\"\n \n @param suggestions - Array of {command, description} pairs\n * @param colors - Color functions\n * @returns Formatted footer string\n /\nexport function formatFooter(\n suggestions: { command: string; description: string }[],\n colors: ReturnType<typeof createColors>,\n): string {\n if (suggestions.length === 0) {\n return '';\n }\n\n const parts = suggestions.map((s) => `${colors.bold(`'${s.command}'`)} for ${s.description}`);\n\n if (parts.length === 1) {\n return `Use ${parts[0]}.`;\n }\n\n return `Use ${parts.join(', ')}.`;\n}\n","/\n Centralized path constants for tbd.\n \n Directory structure (per spec):\n \n On main/dev branches:\n * .tbd/\n * config.yml - Project configuration (tracked)\n * state.yml - Local state (gitignored)\n * .gitignore - Ignores docs/, data-sync-worktree/, data-sync/\n * docs/ - Installed documentation (gitignored, regenerated on setup)\n * data-sync-worktree/ - Hidden worktree checkout of tbd-sync branch\n * .tbd/\n * data-sync/\n * issues/\n * mappings/\n * attic/\n * meta.yml\n \n On tbd-sync branch:\n * .tbd/\n * data-sync/\n * issues/\n * mappings/\n * attic/\n * meta.yml\n /\n\nimport { join } from 'node:path';\n\n/* The tbd configuration directory on main branch /\nexport const TBD_DIR = '.tbd';\n\n/* The config file path /\nexport const CONFIG_FILE = join(TBD_DIR, 'config.yml');\n\n/* The local state file (gitignored) /\nexport const STATE_FILE = join(TBD_DIR, 'state.yml');\n\n/* The worktree directory name /\nexport const WORKTREE_DIR_NAME = 'data-sync-worktree';\n\n/* The worktree path (gitignored) /\nexport const WORKTREE_DIR = join(TBD_DIR, WORKTREE_DIR_NAME);\n\n/* The data directory name on the sync branch /\nexport const DATA_SYNC_DIR_NAME = 'data-sync';\n\n/\n The base directory for synced data.\n \n NOTE: This is currently pointing directly to .tbd/data-sync/ which is WRONG\n * per the spec. The correct path should be via the worktree:\n * .tbd/data-sync-worktree/.tbd/data-sync/\n \n TODO(tbd-208): Update this to use the worktree path once worktree\n * management is implemented.\n /\nexport const DATA_SYNC_DIR = join(TBD_DIR, DATA_SYNC_DIR_NAME);\n\n/\n The correct path for synced data via worktree (per spec).\n * Use this once worktree management is implemented.\n /\nexport const DATA_SYNC_DIR_VIA_WORKTREE = join(WORKTREE_DIR, TBD_DIR, DATA_SYNC_DIR_NAME);\n\n/* Issues directory /\nexport const ISSUES_DIR = join(DATA_SYNC_DIR, 'issues');\n\n/* Mappings directory /\nexport const MAPPINGS_DIR = join(DATA_SYNC_DIR, 'mappings');\n\n/* Attic directory for conflict resolution /\nexport const ATTIC_DIR = join(DATA_SYNC_DIR, 'attic');\n\n/* Meta file for schema version /\nexport const META_FILE = join(DATA_SYNC_DIR, 'meta.yml');\n\n/* The sync branch name /\nexport const SYNC_BRANCH = 'tbd-sync';\n\n// =============================================================================\n// Workspace Paths (for sync failure recovery, backups, bulk editing)\n// =============================================================================\n\n/* The workspaces directory name within .tbd/ /\nexport const WORKSPACES_DIR_NAME = 'workspaces';\n\n/* Full path to workspaces directory: .tbd/workspaces/ /\nexport const WORKSPACES_DIR = join(TBD_DIR, WORKSPACES_DIR_NAME);\n\n/\n Get the path to a named workspace directory.\n \n Workspaces are stored at: .tbd/workspaces/{name}/\n \n @param workspaceName - The name of the workspace (e.g., 'outbox', 'my-feature')\n * @returns Path to the workspace directory\n /\nexport function getWorkspaceDir(workspaceName: string): string {\n return join(WORKSPACES_DIR, workspaceName);\n}\n\n/\n Get the path to a workspace's issues directory.\n \n @param workspaceName - The name of the workspace\n * @returns Path to the workspace's issues directory\n /\nexport function getWorkspaceIssuesDir(workspaceName: string): string {\n return join(getWorkspaceDir(workspaceName), 'issues');\n}\n\n/\n Get the path to a workspace's mappings directory.\n \n @param workspaceName - The name of the workspace\n * @returns Path to the workspace's mappings directory\n /\nexport function getWorkspaceMappingsDir(workspaceName: string): string {\n return join(getWorkspaceDir(workspaceName), 'mappings');\n}\n\n/\n Get the path to a workspace's attic directory.\n \n The attic stores conflict backups during workspace save operations.\n \n @param workspaceName - The name of the workspace\n * @returns Path to the workspace's attic directory\n /\nexport function getWorkspaceAtticDir(workspaceName: string): string {\n return join(getWorkspaceDir(workspaceName), 'attic');\n}\n\n/\n Validate a workspace name.\n \n Valid workspace names:\n * - Lowercase alphanumeric characters\n * - Hyphens and underscores allowed\n * - Must not be empty\n * - Must not contain path separators or dots at start\n \n @param name - The workspace name to validate\n * @returns true if the name is valid\n /\nexport function isValidWorkspaceName(name: string): boolean {\n if (!name \|\| name.length === 0) {\n return false;\n }\n\n // Must not start with dot (hidden files)\n if (name.startsWith('.')) {\n return false;\n }\n\n // Only allow lowercase alphanumeric, hyphens, and underscores\n // No spaces, path separators, or special characters\n const validPattern = /^[a-z0-9][a-z0-9_-]$/;\n return validPattern.test(name);\n}\n\n// =============================================================================\n// Documentation/Shortcuts Paths\n// =============================================================================\n\n/** Docs directory name within .tbd/ /\nexport const DOCS_DIR = 'docs';\n\n/* Shortcuts directory name within docs/ /\nexport const SHORTCUTS_DIR = 'shortcuts';\n\n/* System shortcuts directory name (core docs like skill.md) /\nexport const SYSTEM_DIR = 'system';\n\n/* Standard shortcuts directory name (workflow shortcuts) /\nexport const STANDARD_DIR = 'standard';\n\n/* Guidelines directory name (coding rules and best practices) /\nexport const GUIDELINES_DIR = 'guidelines';\n\n/* Templates directory name (document templates) /\nexport const TEMPLATES_DIR = 'templates';\n\n/* Full path to docs directory: .tbd/docs/ /\nexport const TBD_DOCS_DIR = join(TBD_DIR, DOCS_DIR);\n\n/* Full path to shortcuts directory: .tbd/docs/shortcuts/ /\nexport const TBD_SHORTCUTS_DIR = join(TBD_DOCS_DIR, SHORTCUTS_DIR);\n\n/* Full path to system shortcuts: .tbd/docs/shortcuts/system/ /\nexport const TBD_SHORTCUTS_SYSTEM = join(TBD_SHORTCUTS_DIR, SYSTEM_DIR);\n\n/* Full path to standard shortcuts: .tbd/docs/shortcuts/standard/ /\nexport const TBD_SHORTCUTS_STANDARD = join(TBD_SHORTCUTS_DIR, STANDARD_DIR);\n\n/* Full path to guidelines: .tbd/docs/guidelines/ (top-level, not under shortcuts) /\nexport const TBD_GUIDELINES_DIR = join(TBD_DOCS_DIR, GUIDELINES_DIR);\n\n/* Full path to templates: .tbd/docs/templates/ (top-level, not under shortcuts) /\nexport const TBD_TEMPLATES_DIR = join(TBD_DOCS_DIR, TEMPLATES_DIR);\n\n/* @deprecated Use TBD_GUIDELINES_DIR instead /\nexport const TBD_SHORTCUTS_GUIDELINES = TBD_GUIDELINES_DIR;\n\n/* @deprecated Use TBD_TEMPLATES_DIR instead /\nexport const TBD_SHORTCUTS_TEMPLATES = TBD_TEMPLATES_DIR;\n\n/* Built-in docs source paths (relative to package docs/) /\nexport const BUILTIN_SHORTCUTS_SYSTEM = join(SHORTCUTS_DIR, SYSTEM_DIR);\nexport const BUILTIN_SHORTCUTS_STANDARD = join(SHORTCUTS_DIR, STANDARD_DIR);\n\n/* Built-in guidelines source path (relative to package docs/) /\nexport const BUILTIN_GUIDELINES_DIR = GUIDELINES_DIR;\n\n/* Built-in templates source path (relative to package docs/) /\nexport const BUILTIN_TEMPLATES_DIR = TEMPLATES_DIR;\n\n/* Install directory name (header files for tool-specific installation) /\nexport const INSTALL_DIR = 'install';\n\n/* Built-in install source path (relative to package docs/) /\nexport const BUILTIN_INSTALL_DIR = INSTALL_DIR;\n\n/\n Default shortcut lookup paths (searched in order, relative to tbd root).\n * Earlier paths take precedence over later paths.\n * Note: Guidelines and templates are now separate top-level directories.\n /\nexport const DEFAULT_SHORTCUT_PATHS = [\n TBD_SHORTCUTS_SYSTEM, // .tbd/docs/shortcuts/system/\n TBD_SHORTCUTS_STANDARD, // .tbd/docs/shortcuts/standard/\n];\n\n/\n Default guidelines lookup paths (relative to tbd root).\n /\nexport const DEFAULT_GUIDELINES_PATHS = [\n TBD_GUIDELINES_DIR, // .tbd/docs/guidelines/\n];\n\n/\n Default template lookup paths (relative to tbd root).\n /\nexport const DEFAULT_TEMPLATE_PATHS = [\n TBD_TEMPLATES_DIR, // .tbd/docs/templates/\n];\n\n/\n Get the full path to an issue file.\n /\nexport function getIssuePath(issueId: string): string {\n return join(ISSUES_DIR, `${issueId}.md`);\n}\n\n/\n Get the full path to a mapping file.\n /\nexport function getMappingPath(name: string): string {\n return join(MAPPINGS_DIR, `${name}.yml`);\n}\n\n/\n Get the full path to an attic entry.\n /\nexport function getAtticPath(issueId: string, filename: string): string {\n return join(ATTIC_DIR, 'conflicts', issueId, filename);\n}\n\n// =============================================================================\n// Dynamic Path Resolution\n// =============================================================================\n\nimport { access } from 'node:fs/promises';\n\n/\n Options for resolveDataSyncDir.\n /\nexport interface ResolveDataSyncDirOptions {\n /\n Allow fallback to direct path when worktree is missing.\n * Set to true for test environments or diagnostic tools.\n * Default: true. When false and worktree is missing, throws WorktreeMissingError.\n /\n allowFallback?: boolean;\n}\n\n/\n Error thrown when worktree is missing and fallback is not allowed.\n * Defined inline to avoid circular dependency with errors.ts.\n /\nexport class WorktreeMissingError extends Error {\n constructor(\n message = \"Worktree not found at .tbd/data-sync-worktree/. Run 'tbd doctor --fix' to repair.\",\n ) {\n super(message);\n this.name = 'WorktreeMissingError';\n }\n}\n\n/\n Cache for resolved data sync directory.\n * Reset when baseDir changes.\n /\nlet _resolvedDataSyncDir: string \| null = null;\nlet _resolvedBaseDir: string \| null = null;\nlet _resolvedAllowFallback: boolean \| null = null;\n\n/\n Resolve the actual data sync directory path.\n \n This function detects whether we're running with a git worktree\n * (production) or in a test environment without worktree.\n \n Order of preference:\n * 1. Worktree path if worktree exists: .tbd/data-sync-worktree/.tbd/data-sync/\n * 2. Direct path as fallback (only if allowFallback: true)\n \n @param baseDir - The base directory of the repository (default: process.cwd())\n * @param options - Options for path resolution\n * @returns Resolved data sync directory path\n * @throws WorktreeMissingError if worktree missing and allowFallback is false\n \n See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n /\nexport async function resolveDataSyncDir(\n baseDir: string = process.cwd(),\n options?: ResolveDataSyncDirOptions,\n): Promise<string> {\n const allowFallback = options?.allowFallback ?? true;\n\n // Return cached result if baseDir and options haven't changed\n if (\n _resolvedDataSyncDir &&\n _resolvedBaseDir === baseDir &&\n _resolvedAllowFallback === allowFallback\n ) {\n return _resolvedDataSyncDir;\n }\n\n const worktreePath = join(baseDir, DATA_SYNC_DIR_VIA_WORKTREE);\n const directPath = join(baseDir, DATA_SYNC_DIR);\n\n // Check if worktree path exists\n try {\n await access(worktreePath);\n _resolvedDataSyncDir = worktreePath;\n _resolvedBaseDir = baseDir;\n _resolvedAllowFallback = allowFallback;\n return worktreePath;\n } catch {\n // Worktree doesn't exist\n if (!allowFallback) {\n throw new WorktreeMissingError();\n }\n\n // Fallback to direct path (test mode or diagnostic tools)\n // Note: In production, sync.ts checks worktree health before calling this\n // Debug warning to help detect unintended fallback usage\n if (process.env.DEBUG \|\| process.env.TBD_DEBUG) {\n console.warn(\n '[tbd:paths] resolveDataSyncDir: worktree not found, falling back to direct path',\n );\n }\n _resolvedDataSyncDir = directPath;\n _resolvedBaseDir = baseDir;\n _resolvedAllowFallback = allowFallback;\n return directPath;\n }\n}\n\n/\n Resolve issues directory path.\n /\nexport async function resolveIssuesDir(\n baseDir: string = process.cwd(),\n options?: ResolveDataSyncDirOptions,\n): Promise<string> {\n const dataSyncDir = await resolveDataSyncDir(baseDir, options);\n return join(dataSyncDir, 'issues');\n}\n\n/\n Resolve mappings directory path.\n /\nexport async function resolveMappingsDir(\n baseDir: string = process.cwd(),\n options?: ResolveDataSyncDirOptions,\n): Promise<string> {\n const dataSyncDir = await resolveDataSyncDir(baseDir, options);\n return join(dataSyncDir, 'mappings');\n}\n\n/\n Resolve attic directory path.\n /\nexport async function resolveAtticDir(\n baseDir: string = process.cwd(),\n options?: ResolveDataSyncDirOptions,\n): Promise<string> {\n const dataSyncDir = await resolveDataSyncDir(baseDir, options);\n return join(dataSyncDir, 'attic');\n}\n\n/\n Clear the resolved path cache.\n * Call this when the repository state changes (e.g., after init).\n /\nexport function clearPathCache(): void {\n _resolvedDataSyncDir = null;\n _resolvedBaseDir = null;\n _resolvedAllowFallback = null;\n}\n\n// =============================================================================\n// Doc Path Resolution\n// =============================================================================\n\nimport { isAbsolute } from 'node:path';\nimport { homedir } from 'node:os';\n\n/\n Resolve a doc path for consistent handling across the codebase.\n \n Path resolution rules:\n * - Absolute paths (starting with /): used as-is\n * - Home directory paths (starting with ~/): expanded to user home directory\n * - Relative paths: resolved from tbd root (baseDir)\n \n @param docPath - The path to resolve\n * @param baseDir - The tbd root directory (parent of .tbd/), defaults to cwd\n * @returns Resolved absolute path\n \n @example\n * // Absolute path - returned as-is\n * resolveDocPath('/usr/local/docs/file.md') // => '/usr/local/docs/file.md'\n \n // Home path - expanded\n * resolveDocPath('~/docs/file.md') // => '/Users/username/docs/file.md'\n \n // Relative path - resolved from baseDir\n * resolveDocPath('docs/file.md', '/project') // => '/project/docs/file.md'\n /\nexport function resolveDocPath(docPath: string, baseDir: string = process.cwd()): string {\n // Handle home directory expansion\n if (docPath.startsWith('~/')) {\n return join(homedir(), docPath.slice(2));\n }\n\n // Absolute paths used as-is\n if (isAbsolute(docPath)) {\n return docPath;\n }\n\n // Relative paths resolved from baseDir (tbd root)\n return join(baseDir, docPath);\n}\n\n// =============================================================================\n// Token Estimation Settings\n// =============================================================================\n\n/\n Characters per token ratio for estimating token counts.\n \n Based on research of OpenAI (tiktoken) and Claude tokenizers:\n * - Pure English prose: ~4-5 chars/token\n * - Code and symbols: ~3 chars/token\n * - Mixed markdown/code docs: ~3.5 chars/token\n \n We use 3.5 as our docs are markdown with code examples.\n * This provides ~15-20% accuracy, sufficient for cost estimation.\n /\nexport const CHARS_PER_TOKEN = 3.5;\n","/\n tbd Directory Format Versioning\n * ================================\n \n This file is the SINGLE SOURCE OF TRUTH for .tbd/ directory format versions.\n \n WHEN TO BUMP THE FORMAT VERSION:\n * - Bump when changes REQUIRE migration (deleting files, changing formats, moving files)\n * - Bump when changing config schema (adding, removing, or modifying fields)\n * - Do NOT bump for additive changes that don't affect config.yml (new directories, etc.)\n \n HOW TO ADD A NEW FORMAT VERSION:\n * 1. Add entry to FORMAT_HISTORY with detailed description\n * 2. Implement migrate_fXX_to_fYY() function\n * 3. Add case to migrateToLatest()\n * 4. Update CURRENT_FORMAT\n * 5. Add tests for the migration path\n \n FORWARD COMPATIBILITY POLICY:\n * ConfigSchema uses Zod's strip() mode, which discards unknown fields. To prevent\n * data loss when users mix tbd versions:\n \n 1. When changing config schema, bump the format version (e.g., f03 → f04)\n * 2. config.ts checks format compatibility via isCompatibleFormat()\n * 3. Older tbd versions will error with \"format 'fXX' is from a newer tbd version\"\n * 4. The error tells users to upgrade: npm install -g get-tbd@latest\n \n This ensures older versions fail fast rather than silently corrupting config.\n * See ConfigSchema in schemas.ts and checkFormatCompatibility() in config.ts.\n /\n\n// =============================================================================\n// Format Constants\n// =============================================================================\n\n/\n Current format version.\n * Bump this ONLY for breaking changes that require migration.\n /\nexport const CURRENT_FORMAT = 'f03';\n\n/\n Initial format version for configs that don't have tbd_format field.\n /\nexport const INITIAL_FORMAT = 'f01';\n\n// =============================================================================\n// Format History\n// =============================================================================\n\n/\n Complete history of format versions with their changes.\n * This serves as documentation and enables version detection.\n /\nexport const FORMAT_HISTORY = {\n f01: {\n introduced: '0.1.0',\n description: 'Initial format',\n structure: {\n 'config.yml': 'Project configuration',\n 'state.yml': 'Local state (gitignored)',\n 'docs/': 'Documentation cache (gitignored)',\n 'issues/': 'Issue YAML files',\n },\n },\n f02: {\n introduced: '0.1.5',\n description: 'Adds configurable doc_cache',\n changes: [\n 'Added doc_cache: key to config.yml for configurable doc sources',\n 'Added settings.doc_auto_sync_hours for automatic doc refresh',\n 'Added last_doc_sync_at to state.yml for tracking sync time',\n ],\n migration: 'Populates default doc_cache config from bundled docs',\n },\n f03: {\n introduced: '0.1.6',\n description: 'Consolidates docs_cache config structure',\n changes: [\n 'Consolidated doc_cache: and docs: into single docs_cache: key',\n 'Moved doc_cache: -> docs_cache.files:',\n 'Moved docs.paths: -> docs_cache.lookup_path:',\n 'Removed separate docs: key',\n ],\n migration: 'Migrates old config keys to new docs_cache structure',\n },\n} as const;\n\nexport type FormatVersion = keyof typeof FORMAT_HISTORY;\n\n// =============================================================================\n// Migration Types\n// =============================================================================\n\n/\n Raw config data before parsing/validation.\n * Used during migration when we need to work with potentially old formats.\n /\nexport interface RawConfig {\n tbd_format?: string;\n tbd_version?: string;\n sync?: {\n branch?: string;\n remote?: string;\n };\n display?: {\n id_prefix?: string;\n };\n settings?: {\n auto_sync?: boolean;\n doc_auto_sync_hours?: number;\n };\n // Old format (f02 and earlier)\n docs?: {\n paths?: string[];\n };\n doc_cache?: Record<string, string>;\n // New format (f03+)\n docs_cache?: {\n files?: Record<string, string>;\n lookup_path?: string[];\n };\n}\n\n/\n Result of a migration operation.\n /\nexport interface MigrationResult {\n /* The migrated config /\n config: RawConfig;\n /* Format version before migration /\n fromFormat: FormatVersion;\n /* Format version after migration /\n toFormat: FormatVersion;\n /* Whether any changes were made /\n changed: boolean;\n /* Description of changes made /\n changes: string[];\n}\n\n// =============================================================================\n// Migration Functions\n// =============================================================================\n\n/\n Migrate from f01 to f02.\n * - Adds tbd_format field\n * - Adds doc_auto_sync_hours setting (default: 24)\n * - doc_cache will be populated separately during setup (requires file system access)\n /\nfunction migrate_f01_to_f02(config: RawConfig): MigrationResult {\n const changes: string[] = [];\n const migrated = { ...config };\n\n // Add format version\n migrated.tbd_format = 'f02';\n changes.push('Added tbd_format: f02');\n\n // Ensure settings exists and add doc_auto_sync_hours\n migrated.settings ??= {};\n if (migrated.settings.doc_auto_sync_hours === undefined) {\n migrated.settings.doc_auto_sync_hours = 24;\n changes.push('Added settings.doc_auto_sync_hours: 24');\n }\n\n // Note: doc_cache is intentionally NOT added here.\n // It will be populated during setup when we have access to the file system\n // and can enumerate the bundled docs.\n\n return {\n config: migrated,\n fromFormat: 'f01',\n toFormat: 'f02',\n changed: changes.length > 0,\n changes,\n };\n}\n\n/\n Migrate from f02 to f03.\n * - Consolidates doc_cache: and docs: into docs_cache:\n * - Moves doc_cache: -> docs_cache.files:\n * - Moves docs.paths: -> docs_cache.lookup_path:\n * - Removes separate docs: and doc_cache: keys\n /\nfunction migrate_f02_to_f03(config: RawConfig): MigrationResult {\n const changes: string[] = [];\n const migrated = { ...config };\n\n // Update format version\n migrated.tbd_format = 'f03';\n changes.push('Updated tbd_format: f03');\n\n // Initialize docs_cache if it doesn't exist\n migrated.docs_cache ??= {};\n\n // Migrate doc_cache -> docs_cache.files\n if (migrated.doc_cache && Object.keys(migrated.doc_cache).length > 0) {\n migrated.docs_cache.files = { ...migrated.doc_cache };\n changes.push('Moved doc_cache: -> docs_cache.files:');\n delete migrated.doc_cache;\n }\n\n // Migrate docs.paths -> docs_cache.lookup_path\n if (migrated.docs?.paths && migrated.docs.paths.length > 0) {\n migrated.docs_cache.lookup_path = [...migrated.docs.paths];\n changes.push('Moved docs.paths: -> docs_cache.lookup_path:');\n }\n\n // Remove old docs: key\n if (migrated.docs) {\n delete migrated.docs;\n changes.push('Removed docs: key');\n }\n\n return {\n config: migrated,\n fromFormat: 'f02',\n toFormat: 'f03',\n changed: changes.length > 0,\n changes,\n };\n}\n\n// =============================================================================\n// Public API\n// =============================================================================\n\n/\n Detect the format version of a config.\n * Returns INITIAL_FORMAT ('f01') if no tbd_format field is present.\n /\nexport function detectFormat(config: RawConfig): FormatVersion {\n const format = config.tbd_format;\n if (!format) {\n return INITIAL_FORMAT;\n }\n if (format in FORMAT_HISTORY) {\n return format as FormatVersion;\n }\n // Unknown format - treat as latest (will fail validation if incompatible)\n return CURRENT_FORMAT;\n}\n\n/\n Check if a config needs migration.\n /\nexport function needsMigration(config: RawConfig): boolean {\n const currentFormat = detectFormat(config);\n return currentFormat !== CURRENT_FORMAT;\n}\n\n/\n Migrate a config to the latest format version.\n \n This function applies all necessary migrations in sequence.\n * It does NOT populate doc_cache - that requires file system access\n * and should be done separately during setup.\n \n @param config - The raw config to migrate\n * @returns Migration result with the migrated config and change log\n /\nexport function migrateToLatest(config: RawConfig): MigrationResult {\n const fromFormat = detectFormat(config);\n\n if (fromFormat === CURRENT_FORMAT) {\n return {\n config,\n fromFormat,\n toFormat: CURRENT_FORMAT,\n changed: false,\n changes: [],\n };\n }\n\n let current = config;\n let currentFormat: FormatVersion = fromFormat;\n const allChanges: string[] = [];\n\n // Apply migrations in sequence\n if (currentFormat === 'f01') {\n const result = migrate_f01_to_f02(current);\n current = result.config;\n currentFormat = 'f02' as FormatVersion;\n allChanges.push(...result.changes);\n }\n\n if (currentFormat === 'f02') {\n const result = migrate_f02_to_f03(current);\n current = result.config;\n currentFormat = 'f03' as FormatVersion;\n allChanges.push(...result.changes);\n }\n\n // Add more migrations here as new format versions are added\n\n return {\n config: current,\n fromFormat,\n toFormat: currentFormat,\n changed: allChanges.length > 0,\n changes: allChanges,\n };\n}\n\n/\n Check if a format version is compatible with the current tbd version.\n * Future format versions are considered incompatible (would need tbd upgrade).\n /\nexport function isCompatibleFormat(format: string): boolean {\n const formatVersions = Object.keys(FORMAT_HISTORY);\n const currentIndex = formatVersions.indexOf(CURRENT_FORMAT);\n const checkIndex = formatVersions.indexOf(format);\n\n if (checkIndex === -1) {\n // Unknown format - might be from a newer tbd version\n return false;\n }\n\n // Compatible if same or older format (we can migrate up)\n return checkIndex <= currentIndex;\n}\n\n/\n Get a human-readable description of what migrations will be applied.\n /\nexport function describeMigration(fromFormat: FormatVersion): string[] {\n const descriptions: string[] = [];\n let current = fromFormat;\n\n if (current === 'f01') {\n descriptions.push('f01 → f02: Add doc_cache configuration support');\n current = 'f02';\n }\n\n if (current === 'f02') {\n descriptions.push('f02 → f03: Consolidate doc_cache and docs into docs_cache');\n current = 'f03';\n }\n\n // Add more migration descriptions here\n\n return descriptions;\n}\n","/\n Config file operations.\n \n Config is stored at .tbd/config.yml and contains project-level settings.\n \n ⚠️ FORMAT VERSIONING: See tbd-format.ts for version history and migration rules.\n \n See: tbd-design.md §2.2.2 Config File\n /\n\nimport { readFile, mkdir, access } from 'node:fs/promises';\nimport { join, dirname, parse as parsePath } from 'node:path';\nimport { writeFile } from 'atomically';\nimport { parse as parseYaml, stringify as stringifyYaml } from 'yaml';\n\nimport type { Config, LocalState } from '../lib/types.js';\nimport { ConfigSchema, LocalStateSchema } from '../lib/schemas.js';\nimport { CONFIG_FILE, STATE_FILE, SYNC_BRANCH } from '../lib/paths.js';\nimport {\n CURRENT_FORMAT,\n needsMigration,\n migrateToLatest,\n isCompatibleFormat,\n type RawConfig,\n} from '../lib/tbd-format.js';\n\n/\n Error thrown when the config format version is from a newer tbd version.\n * This prevents older tbd versions from silently stripping new config fields.\n /\nexport class IncompatibleFormatError extends Error {\n constructor(\n public readonly foundFormat: string,\n public readonly supportedFormat: string,\n ) {\n super(\n `Config format '${foundFormat}' is from a newer tbd version.\\n` +\n `This tbd version supports up to format '${supportedFormat}'.\\n` +\n `Please upgrade tbd: npm install -g get-tbd@latest`,\n );\n this.name = 'IncompatibleFormatError';\n }\n}\n\n/\n Check if config format is compatible, throw if not.\n * This prevents older tbd versions from silently stripping fields added by newer versions.\n /\nfunction checkFormatCompatibility(data: RawConfig): void {\n const format = data.tbd_format;\n if (format && !isCompatibleFormat(format)) {\n throw new IncompatibleFormatError(format, CURRENT_FORMAT);\n }\n}\n\n/\n Create default config for a new project.\n * @param prefix - Required: the project prefix for display IDs (e.g., \"proj\", \"myapp\")\n /\nfunction createDefaultConfig(version: string, prefix: string): Config {\n return ConfigSchema.parse({\n tbd_format: CURRENT_FORMAT,\n tbd_version: version,\n sync: {\n branch: SYNC_BRANCH,\n remote: 'origin',\n },\n display: {\n id_prefix: prefix,\n },\n settings: {\n auto_sync: false,\n doc_auto_sync_hours: 24,\n },\n });\n}\n\n/\n Initialize a new config file with default settings.\n * Creates .tbd directory if it doesn't exist.\n * @param prefix - Required: the project prefix for display IDs (e.g., \"proj\", \"myapp\")\n /\nexport async function initConfig(\n baseDir: string,\n version: string,\n prefix: string,\n): Promise<Config> {\n const tbdDir = join(baseDir, '.tbd');\n await mkdir(tbdDir, { recursive: true });\n\n const config = createDefaultConfig(version, prefix);\n await writeConfig(baseDir, config);\n\n return config;\n}\n\n/\n Read config from file with automatic migration if needed.\n \n ⚠️ FORMAT VERSIONING: See tbd-format.ts for version history and migration rules.\n \n @throws {IncompatibleFormatError} If config is from a newer tbd version.\n * @throws If config file doesn't exist or is invalid.\n /\nexport async function readConfig(baseDir: string): Promise<Config> {\n const configPath = join(baseDir, CONFIG_FILE);\n const content = await readFile(configPath, 'utf-8');\n const data = parseYaml(content) as RawConfig;\n\n // Check for incompatible (future) format versions first\n checkFormatCompatibility(data);\n\n // Check if migration is needed (for older formats)\n if (needsMigration(data)) {\n const result = migrateToLatest(data);\n // Note: We don't automatically write the migrated config here.\n // Migration writes should be explicit via writeConfig() after setup.\n return ConfigSchema.parse(result.config);\n }\n\n return ConfigSchema.parse(data);\n}\n\n/\n Read config from file, returning migration info if a migration was applied.\n * Use this when you need to know if the config was migrated.\n \n @throws {IncompatibleFormatError} If config is from a newer tbd version.\n /\nexport async function readConfigWithMigration(\n baseDir: string,\n): Promise<{ config: Config; migrated: boolean; changes: string[] }> {\n const configPath = join(baseDir, CONFIG_FILE);\n const content = await readFile(configPath, 'utf-8');\n const data = parseYaml(content) as RawConfig;\n\n // Check for incompatible (future) format versions first\n checkFormatCompatibility(data);\n\n if (needsMigration(data)) {\n const result = migrateToLatest(data);\n return {\n config: ConfigSchema.parse(result.config),\n migrated: result.changed,\n changes: result.changes,\n };\n }\n\n return {\n config: ConfigSchema.parse(data),\n migrated: false,\n changes: [],\n };\n}\n\n/\n Write config to file with explanatory comments.\n /\nexport async function writeConfig(baseDir: string, config: Config): Promise<void> {\n const configPath = join(baseDir, CONFIG_FILE);\n\n const yaml = stringifyYaml(config, {\n sortMapEntries: true,\n lineWidth: 0,\n });\n\n // Add explanatory comments for docs_cache section\n let content = yaml;\n if (config.docs_cache && Object.keys(config.docs_cache).length > 0) {\n const docsCacheComment = `# Documentation cache configuration.\n# files: Maps destination paths (relative to .tbd/docs/) to source locations.\n# Sources can be:\n# - internal: prefix for bundled docs (e.g., \"internal:shortcuts/standard/commit-code.md\")\n# - Full URL for external docs (e.g., \"https://raw.githubusercontent.com/org/repo/main/file.md\")\n# lookup_path: Search paths for doc lookup (like shell $PATH). Earlier paths take precedence.\n#\n# To sync docs: tbd sync --docs\n# To check status: tbd sync --status\n#\n# Auto-sync: Docs are automatically synced when stale (default: every 24 hours).\n# Configure with settings.doc_auto_sync_hours (0 = disabled).\n`;\n content = content.replace('docs_cache:', docsCacheComment + 'docs_cache:');\n }\n\n await writeFile(configPath, content);\n}\n\n/\n Check if tbd is initialized in the given directory (immediate check only).\n * Returns true if .tbd/ directory exists directly in baseDir.\n /\nasync function hasTbdDir(dir: string): Promise<boolean> {\n const tbdDir = join(dir, '.tbd');\n try {\n await access(tbdDir);\n return true;\n } catch {\n return false;\n }\n}\n\n/\n Find the tbd repository root by walking up the directory tree.\n * Similar to how git finds .git/ directories.\n \n @param startDir - Directory to start searching from\n * @returns The tbd root directory path, or null if not found\n /\nexport async function findTbdRoot(startDir: string): Promise<string \| null> {\n let currentDir = startDir;\n const { root } = parsePath(startDir);\n\n while (currentDir !== root) {\n if (await hasTbdDir(currentDir)) {\n return currentDir;\n }\n currentDir = dirname(currentDir);\n }\n\n // Check root directory as well\n if (await hasTbdDir(root)) {\n return root;\n }\n\n return null;\n}\n\n/\n Check if tbd is initialized in the given directory or any parent directory.\n * Walks up the directory tree looking for .tbd/.\n /\nexport async function isInitialized(baseDir: string): Promise<boolean> {\n const root = await findTbdRoot(baseDir);\n return root !== null;\n}\n\n// =============================================================================\n// Local State Operations\n// =============================================================================\n\n/\n Read local state from .tbd/state.yml\n * Returns empty state if file doesn't exist.\n /\nexport async function readLocalState(baseDir: string): Promise<LocalState> {\n const statePath = join(baseDir, STATE_FILE);\n try {\n const content = await readFile(statePath, 'utf-8');\n const data: unknown = parseYaml(content);\n return LocalStateSchema.parse(data ?? {});\n } catch {\n // File doesn't exist or is invalid - return empty state\n return {};\n }\n}\n\n/\n Write local state to .tbd/state.yml\n /\nexport async function writeLocalState(baseDir: string, state: LocalState): Promise<void> {\n const statePath = join(baseDir, STATE_FILE);\n\n // Ensure .tbd directory exists\n await mkdir(join(baseDir, '.tbd'), { recursive: true });\n\n const yaml = stringifyYaml(state, {\n sortMapEntries: true,\n lineWidth: 0,\n });\n\n await writeFile(statePath, yaml);\n}\n\n/\n Update specific fields in local state (merge with existing).\n /\nexport async function updateLocalState(\n baseDir: string,\n updates: Partial<LocalState>,\n): Promise<LocalState> {\n const current = await readLocalState(baseDir);\n const updated = { ...current, ...updates };\n await writeLocalState(baseDir, updated);\n return updated;\n}\n\n// =============================================================================\n// Welcome State Operations\n// =============================================================================\n\n/\n Check if the user has seen the welcome message.\n /\nexport async function hasSeenWelcome(baseDir: string): Promise<boolean> {\n const state = await readLocalState(baseDir);\n return state.welcome_seen === true;\n}\n\n/\n Mark the welcome message as seen.\n /\nexport async function markWelcomeSeen(baseDir: string): Promise<void> {\n await updateLocalState(baseDir, { welcome_seen: true });\n}\n","/\n CLI error types and helpers for structured error handling.\n \n See: research-modern-typescript-cli-patterns.md#3-base-command-pattern\n /\n\nimport { findTbdRoot } from '../../file/config.js';\n\n/\n Find and return the tbd repository root, starting from the given directory.\n * Walks up the directory tree to find .tbd/.\n \n @param cwd - Working directory to start from (defaults to process.cwd())\n * @returns The tbd repository root path\n * @throws NotInitializedError if tbd is not initialized in any parent directory\n /\nexport async function requireInit(cwd: string = process.cwd()): Promise<string> {\n const tbdRoot = await findTbdRoot(cwd);\n if (!tbdRoot) {\n throw new NotInitializedError();\n }\n return tbdRoot;\n}\n\n/\n Base CLI error. Thrown for operational errors that should exit\n * with a specific code but don't need stack traces.\n /\nexport class CLIError extends Error {\n constructor(\n message: string,\n public exitCode = 1,\n ) {\n super(message);\n this.name = 'CLIError';\n }\n}\n\n/\n Validation error for usage/argument issues.\n * Exit code 2 follows Unix convention.\n /\nexport class ValidationError extends CLIError {\n constructor(message: string) {\n super(message, 2);\n this.name = 'ValidationError';\n }\n}\n\n/\n Not initialized error - tbd repository not found.\n * Uses the stable error message defined in design spec §5.6.\n /\nexport class NotInitializedError extends CLIError {\n constructor(message = \"Not a tbd repository (run 'tbd setup --auto --prefix=<name>' first)\") {\n super(message, 1);\n this.name = 'NotInitializedError';\n }\n}\n\n/\n Entity not found error (issue, config, etc.).\n /\nexport class NotFoundError extends CLIError {\n constructor(entityType: string, id: string) {\n super(`${entityType} not found: ${id}`, 1);\n this.name = 'NotFoundError';\n }\n}\n\n/\n Sync/conflict error.\n /\nexport class SyncError extends CLIError {\n constructor(message: string) {\n super(message, 1);\n this.name = 'SyncError';\n }\n}\n\n/\n Worktree missing error - the data-sync-worktree directory doesn't exist.\n * This indicates the worktree was never created or was deleted.\n * See: tbd-design.md §2.3.6 Worktree Error Classes\n /\nexport class WorktreeMissingError extends CLIError {\n constructor(\n message = \"Worktree not found at .tbd/data-sync-worktree/. Run 'tbd doctor --fix' to repair.\",\n ) {\n super(message, 1);\n this.name = 'WorktreeMissingError';\n }\n}\n\n/\n Worktree corrupted error - the worktree exists but is invalid.\n * This can occur when the .git file is missing or points to an invalid location.\n * See: tbd-design.md §2.3.6 Worktree Error Classes\n /\nexport class WorktreeCorruptedError extends CLIError {\n constructor(\n message = \"Worktree at .tbd/data-sync-worktree/ is corrupted. Run 'tbd doctor --fix' to repair.\",\n ) {\n super(message, 1);\n this.name = 'WorktreeCorruptedError';\n }\n}\n\n/\n Sync branch error - issues with the tbd-sync branch.\n * This can indicate the branch is missing, orphaned, or has diverged.\n * See: tbd-design.md §2.3.6 Worktree Error Classes\n /\nexport class SyncBranchError extends CLIError {\n constructor(message: string) {\n super(message, 1);\n this.name = 'SyncBranchError';\n }\n}\n","/\n Base command class for CLI handlers.\n \n See: research-modern-typescript-cli-patterns.md#3-base-command-pattern\n /\n\nimport type { Command } from 'commander';\n\nimport type { CommandContext, OutputFormat } from './context.js';\nimport { getCommandContext } from './context.js';\nimport { OutputManager } from './output.js';\nimport { CLIError } from './errors.js';\n\n/\n Base class for all CLI command handlers.\n * Provides common functionality for context, output, and error handling.\n /\nexport abstract class BaseCommand {\n protected ctx: CommandContext;\n protected output: OutputManager;\n\n constructor(command: Command) {\n this.ctx = getCommandContext(command);\n this.output = new OutputManager(this.ctx);\n }\n\n /\n Execute an async action with error handling.\n * Catches errors and formats them consistently.\n /\n protected async execute<T>(action: () => Promise<T>, errorMessage: string): Promise<T> {\n try {\n return await action();\n } catch (error) {\n if (error instanceof CLIError) {\n this.output.error(error.message);\n throw error;\n }\n this.output.error(errorMessage, error instanceof Error ? error : undefined);\n throw new CLIError(errorMessage);\n }\n }\n\n /\n Check if dry-run mode is enabled and log the action.\n * Returns true if in dry-run mode (caller should skip the actual action).\n /\n protected checkDryRun(message: string, details?: object): boolean {\n if (this.ctx.dryRun) {\n this.output.dryRun(message, details);\n return true;\n }\n return false;\n }\n\n /\n Abstract method that subclasses must implement.\n * Signature varies by command (positional args + options object).\n /\n abstract run(...args: unknown[]): Promise<void>;\n}\n\n/\n Helper to get output format from context.\n /\nexport function getOutputFormat(ctx: CommandContext): OutputFormat {\n return ctx.json ? 'json' : 'text';\n}\n","/\n File system utility functions.\n /\n\nimport { access } from 'node:fs/promises';\n\n/\n Check if a path exists on the filesystem.\n /\nexport async function pathExists(path: string): Promise<boolean> {\n try {\n await access(path);\n return true;\n } catch {\n return false;\n }\n}\n","/\n Gitignore file utilities for idempotent pattern management.\n /\n\nimport { readFile } from 'node:fs/promises';\nimport { writeFile } from 'atomically';\nimport { pathExists } from './file-utils.js';\n\n/\n Check if a pattern exists in gitignore content.\n * Matches exact lines, normalizing trailing slashes for directories.\n /\nexport function hasGitignorePattern(content: string, pattern: string): boolean {\n const normalizedPattern = pattern.replace(/\\/+$/, '');\n const lines = content.split('\\n');\n\n for (const line of lines) {\n const trimmed = line.trim();\n // Skip comments and empty lines\n if (trimmed === '' \|\| trimmed.startsWith('#')) continue;\n\n const normalizedLine = trimmed.replace(/\\/+$/, '');\n if (normalizedLine === normalizedPattern) {\n return true;\n }\n }\n return false;\n}\n\n/\n Ensure patterns exist in a .gitignore file.\n * Creates file if missing. Appends only missing patterns.\n * Always uses atomic write.\n \n @param gitignorePath - Path to .gitignore file\n * @param patterns - Patterns to ensure exist (can include comments)\n * @param header - Optional header comment for new patterns section\n /\nexport async function ensureGitignorePatterns(\n gitignorePath: string,\n patterns: string[],\n header?: string,\n): Promise<{ added: string[]; skipped: string[]; created: boolean }> {\n // Read existing content or empty string\n let content = '';\n let created = false;\n\n if (await pathExists(gitignorePath)) {\n content = await readFile(gitignorePath, 'utf-8');\n } else {\n created = true;\n }\n\n // Group patterns into entries: each entry is leading comments/blanks followed by\n // one or more actual patterns. Comments are only included if their associated\n // pattern(s) are new, preventing orphaned comment duplication on upgrades.\n const entries: { preamble: string[]; patterns: string[] }[] = [];\n let currentPreamble: string[] = [];\n\n for (const pattern of patterns) {\n const trimmed = pattern.trim();\n if (trimmed === '' \|\| trimmed.startsWith('#')) {\n currentPreamble.push(pattern);\n } else {\n entries.push({ preamble: currentPreamble, patterns: [trimmed] });\n currentPreamble = [];\n }\n }\n // Trailing comments/blanks (no associated pattern) form their own entry\n if (currentPreamble.length > 0) {\n entries.push({ preamble: currentPreamble, patterns: [] });\n }\n\n // Determine which entries have new patterns to add\n const added: string[] = [];\n const skipped: string[] = [];\n const linesToAppend: string[] = [];\n\n for (const entry of entries) {\n const newPatterns = entry.patterns.filter((p) => !hasGitignorePattern(content, p));\n const existingPatterns = entry.patterns.filter((p) => hasGitignorePattern(content, p));\n skipped.push(...existingPatterns);\n\n if (newPatterns.length > 0) {\n added.push(...newPatterns);\n // Include preamble comments only when their associated pattern is new\n linesToAppend.push(...entry.preamble, ...newPatterns);\n }\n }\n\n // If nothing new to add, return early\n if (added.length === 0) {\n return { added: [], skipped, created: false };\n }\n\n // Build new content\n let newContent = content;\n\n // Ensure content ends with newline before appending\n if (newContent && !newContent.endsWith('\\n')) {\n newContent += '\\n';\n }\n\n // Add blank line separator if file has existing content\n if (newContent && !newContent.endsWith('\\n\\n')) {\n newContent += '\\n';\n }\n\n // Add header if provided\n if (header) {\n newContent += header + '\\n';\n }\n\n // Add only entries with new patterns\n newContent += linesToAppend.join('\\n') + '\\n';\n\n // Atomic write\n await writeFile(gitignorePath, newContent);\n\n return { added, skipped, created };\n}\n","/\n Time utilities for tbd.\n \n All timestamps should be ISO 8601 UTC format with Z suffix.\n * Use these functions instead of raw Date calls for consistency.\n /\n\n/\n Get current time as ISO 8601 UTC string.\n * Use this when recording timestamps for new/updated issues.\n /\nexport function now(): string {\n return new Date().toISOString();\n}\n\n/\n Get current time as Date object.\n * Use this when you need date arithmetic or comparisons.\n /\nexport function nowDate(): Date {\n return new Date();\n}\n\n/\n Parse a timestamp string to Date object.\n * Returns null if the timestamp is invalid.\n /\nexport function parseDate(timestamp: string \| undefined \| null): Date \| null {\n if (!timestamp) return null;\n try {\n const date = new Date(timestamp);\n if (isNaN(date.getTime())) return null;\n return date;\n } catch {\n return null;\n }\n}\n\n/\n Normalize any timestamp to ISO 8601 UTC format with Z suffix.\n * Handles various formats including timezone offsets like -08:00.\n * Returns null if the timestamp is invalid or missing.\n /\nexport function normalizeTimestamp(timestamp: string \| undefined \| null): string \| null {\n const date = parseDate(timestamp);\n return date?.toISOString() ?? null;\n}\n\n/\n Check if a timestamp string is valid.\n /\nexport function isValidTimestamp(timestamp: string \| undefined \| null): boolean {\n return parseDate(timestamp) !== null;\n}\n\n/\n Get current time as a filename-safe timestamp.\n * Replaces colons with dashes and removes milliseconds for filesystem compatibility.\n /\nexport function nowFilenameTimestamp(): string {\n return new Date()\n .toISOString()\n .replace(/:/g, '-')\n .replace(/\\.\\d+Z$/, 'Z');\n}\n","/\n Git utilities for sync operations.\n \n Provides:\n * - Isolated index operations (protect user's staging area)\n * - Field-level merge algorithm\n * - Push retry with exponential backoff\n \n See: tbd-design.md §3.3 Sync Operations\n /\n\nimport { execFile } from 'node:child_process';\nimport { mkdir } from 'node:fs/promises';\nimport { promisify } from 'node:util';\nimport { join } from 'node:path';\n\nimport { writeFile } from 'atomically';\n\nimport type { Issue } from '../lib/types.js';\nimport { now, nowFilenameTimestamp } from '../utils/time-utils.js';\n\nconst execFileAsync = promisify(execFile);\n\n/\n Maximum buffer size for git command output.\n \n Node.js child_process.execFile() defaults to 1MB (1024 * 1024 bytes).\n * When exceeded, the child process is terminated with \"stdout maxBuffer length exceeded\".\n * Git commands like push/fetch with verbose output or diff on large changesets can exceed 1MB.\n \n See: https://nodejs.org/api/child_process.html#child_processexecfilefile-args-options-callback\n /\nconst GIT_MAX_BUFFER = 50 1024 * 1024; // 50MB\n\n/*\n Execute a git command and return stdout.\n * Uses execFile for security - prevents shell injection attacks.\n /\nexport async function git(...args: string[]): Promise<string> {\n const { stdout } = await execFileAsync('git', args, { maxBuffer: GIT_MAX_BUFFER });\n return stdout.trim();\n}\n\n// =============================================================================\n// Git Version Detection\n// See: plan spec §3.4 Git Integration Architecture\n// =============================================================================\n\n/\n Minimum Git version required.\n * Git 2.42 (August 2023) introduced `git worktree add --orphan` which tbd requires.\n /\nexport const MIN_GIT_VERSION = '2.42.0';\n\n/\n Parsed Git version information.\n /\n/\n Find the git repository root directory.\n * Uses `git rev-parse --show-toplevel` which returns the absolute path.\n \n @param cwd - Directory to start from (default: process.cwd())\n * @returns Absolute path to the git root, or null if not in a git repo\n /\nexport async function findGitRoot(cwd?: string): Promise<string \| null> {\n try {\n const args = ['rev-parse', '--show-toplevel'];\n if (cwd) {\n args.unshift('-C', cwd);\n }\n return await git(...args);\n } catch {\n return null;\n }\n}\n\n/\n Check if the current directory is inside a git repository.\n /\nexport async function isInGitRepo(cwd?: string): Promise<boolean> {\n try {\n const args = ['rev-parse', '--is-inside-work-tree'];\n if (cwd) {\n args.unshift('-C', cwd);\n }\n const result = await git(...args);\n return result === 'true';\n } catch {\n return false;\n }\n}\n\nexport interface GitVersion {\n major: number;\n minor: number;\n patch: number;\n raw: string;\n}\n\n/\n Get the installed Git version.\n \n @returns Parsed version information\n * @throws Error if git is not installed or version cannot be parsed\n /\nexport async function getGitVersion(): Promise<GitVersion> {\n const versionOutput = await git('--version');\n // Output format: \"git version 2.42.0\" or \"git version 2.42.0.windows.1\"\n const versionRegex = /git version (\\d+)\\.(\\d+)\\.(\\d+)/;\n const match = versionRegex.exec(versionOutput);\n\n const major = match?.[1];\n const minor = match?.[2];\n const patch = match?.[3];\n\n if (!major \|\| !minor \|\| !patch) {\n throw new Error(`Unable to parse git version from: ${versionOutput}`);\n }\n\n return {\n major: parseInt(major, 10),\n minor: parseInt(minor, 10),\n patch: parseInt(patch, 10),\n raw: versionOutput,\n };\n}\n\n/\n Compare two version strings.\n \n @returns -1 if a < b, 0 if a === b, 1 if a > b\n /\nexport function compareVersions(a: GitVersion, b: string): number {\n const parts = b.split('.');\n const bMajor = parseInt(parts[0] ?? '0', 10);\n const bMinor = parseInt(parts[1] ?? '0', 10);\n const bPatch = parseInt(parts[2] ?? '0', 10);\n\n if (a.major !== bMajor) return a.major < bMajor ? -1 : 1;\n if (a.minor !== bMinor) return a.minor < bMinor ? -1 : 1;\n if (a.patch !== bPatch) return a.patch < bPatch ? -1 : 1;\n return 0;\n}\n\n/\n Check if the installed Git version meets minimum requirements.\n \n @returns Object with version info and whether it meets requirements\n * @throws Error with upgrade instructions if Git version is too old\n /\nexport async function checkGitVersion(): Promise<{\n version: GitVersion;\n supported: boolean;\n}> {\n const version = await getGitVersion();\n const supported = compareVersions(version, MIN_GIT_VERSION) >= 0;\n return { version, supported };\n}\n\n/\n Require minimum Git version, throwing an error if not met.\n /\nexport async function requireGitVersion(): Promise<GitVersion> {\n const { version, supported } = await checkGitVersion();\n if (!supported) {\n throw new Error(getUpgradeInstructions(version));\n }\n return version;\n}\n\n/\n Get platform-specific upgrade instructions.\n * Points to official documentation rather than detailed commands for easier maintenance.\n /\nfunction getUpgradeInstructions(currentVersion: GitVersion): string {\n const platform = process.platform;\n const versionStr = `${currentVersion.major}.${currentVersion.minor}.${currentVersion.patch}`;\n\n let upgradeUrl: string;\n switch (platform) {\n case 'darwin':\n upgradeUrl = 'https://git-scm.com/download/mac';\n break;\n case 'linux':\n upgradeUrl = 'https://git-scm.com/download/linux';\n break;\n case 'win32':\n upgradeUrl = 'https://git-scm.com/download/win';\n break;\n default:\n upgradeUrl = 'https://git-scm.com/downloads';\n }\n\n return `Git ${versionStr} detected. Git ${MIN_GIT_VERSION}+ required for tbd.\\nUpgrade: ${upgradeUrl}`;\n}\n\n/\n Execute a git command with isolated index.\n * This protects the user's staging area during sync operations.\n \n See: tbd-design.md §3.3.2 Writing to Sync Branch\n /\nexport async function withIsolatedIndex<T>(fn: () => Promise<T>): Promise<T> {\n const gitDir = await git('rev-parse', '--git-dir');\n const isolatedIndex = join(gitDir, 'tbd-index');\n const originalIndex = process.env.GIT_INDEX_FILE;\n\n try {\n process.env.GIT_INDEX_FILE = isolatedIndex;\n return await fn();\n } finally {\n if (originalIndex) {\n process.env.GIT_INDEX_FILE = originalIndex;\n } else {\n delete process.env.GIT_INDEX_FILE;\n }\n }\n}\n\n/\n Commit changes to sync branch using isolated index.\n /\nexport async function commitToSyncBranch(\n syncBranch: string,\n message: string,\n files: string[],\n): Promise<string> {\n return withIsolatedIndex(async () => {\n // Try to read existing tree from sync branch\n try {\n await git('read-tree', syncBranch);\n } catch {\n // Branch doesn't exist - start fresh\n }\n\n // Add changed files to index\n for (const file of files) {\n await git('add', file);\n }\n\n // Write tree object\n const tree = await git('write-tree');\n\n // Get parent commit if exists\n let parent: string \| null = null;\n try {\n parent = await git('rev-parse', syncBranch);\n } catch {\n // No parent - orphan commit\n }\n\n // Create commit\n // Note: With execFile, we pass the message directly without shell quoting\n const commitArgs = ['commit-tree', tree, '-m', message];\n if (parent) {\n commitArgs.push('-p', parent);\n }\n\n const commit = await git(...commitArgs);\n\n // Update branch ref\n await git('update-ref', `refs/heads/${syncBranch}`, commit);\n\n return commit;\n });\n}\n\n/\n Field-level merge strategy types.\n /\ntype MergeStrategy = 'lww' \| 'union' \| 'max' \| 'immutable';\n\n/\n Field-level merge strategies for Issue fields.\n * See: tbd-design.md §3.5 Merge Rules\n /\nconst FIELD_STRATEGIES: Record<keyof Issue, MergeStrategy> = {\n // Immutable - never change after creation\n type: 'immutable',\n id: 'immutable',\n created_at: 'immutable',\n created_by: 'immutable',\n\n // LWW (Last-Write-Wins) - compare updated_at\n version: 'max',\n kind: 'lww',\n title: 'lww',\n description: 'lww',\n notes: 'lww',\n status: 'lww',\n priority: 'lww',\n assignee: 'lww',\n parent_id: 'lww',\n child_order_hints: 'lww',\n updated_at: 'max',\n closed_at: 'lww',\n close_reason: 'lww',\n due_date: 'lww',\n deferred_until: 'lww',\n spec_path: 'lww',\n\n // Union - combine arrays, deduplicate\n labels: 'union',\n dependencies: 'union',\n\n // Extensions - LWW for whole object\n extensions: 'lww',\n};\n\n/\n Conflict entry for attic storage.\n /\nexport interface ConflictEntry {\n issue_id: string;\n field: string;\n timestamp: string;\n lost_value: unknown;\n winner_value: unknown;\n local_version: number;\n remote_version: number;\n resolution: 'lww' \| 'union' \| 'manual';\n}\n\n/\n Merge result with merged issue and any conflicts.\n /\nexport interface MergeResult {\n merged: Issue;\n conflicts: ConflictEntry[];\n}\n\n/\n Deep equality check for values.\n /\nexport function deepEqual(a: unknown, b: unknown): boolean {\n if (a === b) return true;\n if (a === null \|\| b === null) return a === b;\n if (typeof a !== typeof b) return false;\n\n if (Array.isArray(a) && Array.isArray(b)) {\n if (a.length !== b.length) return false;\n return a.every((item, i) => deepEqual(item, b[i]));\n }\n\n if (typeof a === 'object' && typeof b === 'object') {\n const aKeys = Object.keys(a);\n const bKeys = Object.keys(b);\n if (aKeys.length !== bKeys.length) return false;\n return aKeys.every((key) =>\n deepEqual((a as Record<string, unknown>)[key], (b as Record<string, unknown>)[key]),\n );\n }\n\n return false;\n}\n\n/\n Union arrays with deduplication.\n /\nfunction unionArrays<T>(a: T[], b: T[]): T[] {\n const result = [...a];\n for (const item of b) {\n if (!result.some((existing) => deepEqual(existing, item))) {\n result.push(item);\n }\n }\n return result;\n}\n\n/\n Create an attic entry for a conflict.\n /\nfunction createConflictEntry(\n issueId: string,\n field: string,\n lostValue: unknown,\n winnerValue: unknown,\n localVersion: number,\n remoteVersion: number,\n resolution: 'lww' \| 'union' \| 'manual',\n): ConflictEntry {\n const timestamp = nowFilenameTimestamp();\n\n return {\n issue_id: issueId,\n field,\n timestamp,\n lost_value: lostValue,\n winner_value: winnerValue,\n local_version: localVersion,\n remote_version: remoteVersion,\n resolution,\n };\n}\n\n/\n Three-way merge algorithm for issues.\n * See: tbd-design.md §3.4 Conflict Detection and Resolution\n \n @param base - Common ancestor (null if new issue)\n * @param local - Local version\n * @param remote - Remote version\n /\nexport function mergeIssues(base: Issue \| null, local: Issue, remote: Issue): MergeResult {\n const conflicts: ConflictEntry[] = [];\n\n // If no base, one was created independently - LWW based on created_at\n if (!base) {\n const localTime = new Date(local.created_at).getTime();\n const remoteTime = new Date(remote.created_at).getTime();\n\n if (localTime <= remoteTime) {\n // Local was created first - it wins\n if (!deepEqual(local, remote)) {\n conflicts.push(\n createConflictEntry(\n remote.id,\n 'whole_issue',\n remote,\n local,\n remote.version,\n local.version,\n 'lww',\n ),\n );\n }\n return { merged: local, conflicts };\n } else {\n // Remote was created first - it wins\n if (!deepEqual(local, remote)) {\n conflicts.push(\n createConflictEntry(\n local.id,\n 'whole_issue',\n local,\n remote,\n local.version,\n remote.version,\n 'lww',\n ),\n );\n }\n return { merged: remote, conflicts };\n }\n }\n\n // Field-by-field merge\n const merged = { ...base } as Issue;\n\n for (const [field, strategy] of Object.entries(FIELD_STRATEGIES)) {\n const key = field as keyof Issue;\n const localVal = local[key];\n const remoteVal = remote[key];\n const baseVal = base[key];\n\n // Skip if both unchanged from base\n if (deepEqual(localVal, baseVal) && deepEqual(remoteVal, baseVal)) {\n continue;\n }\n\n // Only one changed - take changed value\n if (deepEqual(localVal, baseVal)) {\n (merged as Record<string, unknown>)[key] = remoteVal;\n continue;\n }\n if (deepEqual(remoteVal, baseVal)) {\n (merged as Record<string, unknown>)[key] = localVal;\n continue;\n }\n\n // Both changed - apply strategy\n switch (strategy) {\n case 'immutable':\n // Keep base value (shouldn't change)\n break;\n\n case 'lww': {\n // Compare updated_at timestamps\n const localTime = new Date(local.updated_at).getTime();\n const remoteTime = new Date(remote.updated_at).getTime();\n\n if (localTime >= remoteTime) {\n (merged as Record<string, unknown>)[key] = localVal;\n conflicts.push(\n createConflictEntry(\n local.id,\n field,\n remoteVal,\n localVal,\n local.version,\n remote.version,\n 'lww',\n ),\n );\n } else {\n (merged as Record<string, unknown>)[key] = remoteVal;\n conflicts.push(\n createConflictEntry(\n local.id,\n field,\n localVal,\n remoteVal,\n local.version,\n remote.version,\n 'lww',\n ),\n );\n }\n break;\n }\n\n case 'union':\n // Combine arrays and deduplicate\n (merged as Record<string, unknown>)[key] = unionArrays(\n localVal as unknown[],\n remoteVal as unknown[],\n );\n break;\n\n case 'max':\n // Take maximum value\n (merged as Record<string, unknown>)[key] = Math.max(\n localVal as number,\n remoteVal as number,\n );\n break;\n }\n }\n\n // Always increment version after merge\n merged.version = Math.max(local.version, remote.version) + 1;\n merged.updated_at = now();\n\n return { merged, conflicts };\n}\n\n/\n Maximum retry attempts for push operations.\n /\nconst MAX_PUSH_RETRIES = 3;\n\n/\n Check if error is a non-fast-forward rejection.\n /\nfunction isNonFastForward(error: unknown): boolean {\n const msg = error instanceof Error ? error.message : String(error);\n return (\n msg.includes('non-fast-forward') \|\| msg.includes('fetch first') \|\| msg.includes('rejected')\n );\n}\n\n/\n Push result with retry information.\n /\nexport interface PushResult {\n success: boolean;\n attempt: number;\n conflicts?: ConflictEntry[];\n error?: string;\n}\n\n/\n Push with retry and merge on conflict.\n * See: tbd-design.md §3.3.3 Sync Algorithm\n \n @param syncBranch - The sync branch name\n * @param remote - The remote name\n * @param onMergeNeeded - Callback to merge remote changes\n /\nexport async function pushWithRetry(\n syncBranch: string,\n remote: string,\n onMergeNeeded: () => Promise<ConflictEntry[]>,\n): Promise<PushResult> {\n for (let attempt = 1; attempt <= MAX_PUSH_RETRIES; attempt++) {\n try {\n // Try to push\n await git('push', remote, syncBranch);\n return { success: true, attempt };\n } catch (error) {\n if (!isNonFastForward(error)) {\n // Unrecoverable error\n return {\n success: false,\n attempt,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n\n if (attempt === MAX_PUSH_RETRIES) {\n return {\n success: false,\n attempt,\n error: `Push failed after ${MAX_PUSH_RETRIES} attempts. Remote has conflicting changes.`,\n };\n }\n\n // Fetch and merge remote changes\n await git('fetch', remote, syncBranch);\n const conflicts = await onMergeNeeded();\n\n if (conflicts.length > 0) {\n // Return conflicts but continue trying\n return { success: false, attempt, conflicts };\n }\n\n // Loop to retry push\n }\n }\n\n return { success: false, attempt: MAX_PUSH_RETRIES, error: 'Unexpected error in push retry' };\n}\n\n/\n Get the current branch name.\n /\nexport async function getCurrentBranch(): Promise<string> {\n return git('rev-parse', '--abbrev-ref', 'HEAD');\n}\n\n/\n Check if a branch exists locally.\n /\nexport async function branchExists(branch: string): Promise<boolean> {\n try {\n await git('rev-parse', '--verify', `refs/heads/${branch}`);\n return true;\n } catch {\n return false;\n }\n}\n\n/\n Check if a remote branch exists.\n /\nexport async function remoteBranchExists(remote: string, branch: string): Promise<boolean> {\n try {\n await git('ls-remote', '--exit-code', remote, `refs/heads/${branch}`);\n return true;\n } catch {\n return false;\n }\n}\n\n/\n Get the remote URL.\n /\nexport async function getRemoteUrl(remote: string): Promise<string \| null> {\n try {\n return await git('remote', 'get-url', remote);\n } catch {\n return null;\n }\n}\n\n// =============================================================================\n// Worktree Management\n// See: tbd-design.md §2.3 Hidden Worktree Model\n// =============================================================================\n\nimport { access, rm, cp } from 'node:fs/promises';\nimport {\n WORKTREE_DIR,\n WORKTREE_DIR_NAME,\n TBD_DIR,\n DATA_SYNC_DIR_NAME,\n SYNC_BRANCH,\n} from '../lib/paths.js';\n\n/\n Check if the hidden worktree exists and is valid.\n /\nexport async function worktreeExists(baseDir: string): Promise<boolean> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n try {\n await access(worktreePath);\n // Also verify it's a valid git worktree by checking for .git file\n await access(join(worktreePath, '.git'));\n return true;\n } catch {\n return false;\n }\n}\n\n/\n Worktree health status values.\n * See: tbd-design.md §2.3.4 Worktree Health States\n /\nexport type WorktreeStatus = 'valid' \| 'missing' \| 'prunable' \| 'corrupted';\n\n/\n Worktree health status.\n /\nexport interface WorktreeHealth {\n /* Whether the worktree directory exists on disk /\n exists: boolean;\n /* Whether the worktree is valid and functional /\n valid: boolean;\n /* Detailed status: valid, missing, prunable, or corrupted /\n status: WorktreeStatus;\n /* The branch checked out in the worktree /\n branch: string \| null;\n /* The commit HEAD points to /\n commit: string \| null;\n /* Error message if status is not 'valid' /\n error?: string;\n}\n\n/\n Check worktree health and return status.\n * See: tbd-design.md §2.3 Worktree Lifecycle\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §3\n /\nexport async function checkWorktreeHealth(baseDir: string): Promise<WorktreeHealth> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n // First check if git reports the worktree as prunable\n // This catches the case where worktree directory was deleted but git still tracks it\n try {\n const worktreeList = await git('-C', baseDir, 'worktree', 'list', '--porcelain');\n\n // Check if our worktree path appears in the list as prunable\n const lines = worktreeList.split('\\n');\n let foundWorktree = false;\n let isPrunable = false;\n\n for (let i = 0; i < lines.length; i++) {\n const line = lines[i];\n // Check if this entry is for our worktree path\n if (line?.startsWith('worktree ') && line.includes(WORKTREE_DIR_NAME)) {\n foundWorktree = true;\n // Look for prunable marker in subsequent lines until next worktree entry\n for (let j = i + 1; j < lines.length && !lines[j]?.startsWith('worktree '); j++) {\n if (lines[j]?.startsWith('prunable')) {\n isPrunable = true;\n break;\n }\n }\n break;\n }\n }\n\n if (isPrunable) {\n return {\n exists: false,\n valid: false,\n status: 'prunable',\n branch: null,\n commit: null,\n error: 'Worktree directory was deleted but git still tracks it. Run: git worktree prune',\n };\n }\n\n // If git doesn't know about the worktree, check if directory exists\n if (!foundWorktree) {\n try {\n await access(worktreePath);\n // Directory exists but git doesn't know about it - corrupted\n return {\n exists: true,\n valid: false,\n status: 'corrupted',\n branch: null,\n commit: null,\n error: 'Worktree directory exists but is not registered with git',\n };\n } catch {\n // Directory doesn't exist and git doesn't know about it - missing\n return {\n exists: false,\n valid: false,\n status: 'missing',\n branch: null,\n commit: null,\n };\n }\n }\n } catch {\n // git worktree list failed - likely not in a git repo\n // Fall through to directory-based checks\n }\n\n // Check if worktree directory exists\n try {\n await access(worktreePath);\n } catch {\n return {\n exists: false,\n valid: false,\n status: 'missing',\n branch: null,\n commit: null,\n };\n }\n\n // Check if it's a valid git worktree\n try {\n await access(join(worktreePath, '.git'));\n } catch {\n return {\n exists: true,\n valid: false,\n status: 'corrupted',\n branch: null,\n commit: null,\n error: 'Worktree directory exists but is not a valid git worktree (missing .git)',\n };\n }\n\n // Get current commit and branch info\n try {\n const commit = await git('-C', worktreePath, 'rev-parse', 'HEAD');\n let branch: string \| null = null;\n\n try {\n // Check if we're on detached HEAD pointing to tbd-sync\n const refName = await git('-C', worktreePath, 'symbolic-ref', '-q', 'HEAD');\n branch = refName.replace('refs/heads/', '');\n } catch {\n // Detached HEAD - expected state\n branch = null;\n }\n\n return { exists: true, valid: true, status: 'valid', branch, commit };\n } catch (error) {\n return {\n exists: true,\n valid: false,\n status: 'corrupted',\n branch: null,\n commit: null,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n/\n Initialize the hidden worktree for the tbd-sync branch.\n * Follows the decision tree from tbd-design.md §2.3.\n \n @param baseDir - The base directory of the repository\n * @param remote - The remote name (default: 'origin')\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n * @returns Path to the worktree or error message\n /\nexport async function initWorktree(\n baseDir: string,\n remote = 'origin',\n syncBranch: string = SYNC_BRANCH,\n): Promise<{ success: boolean; path?: string; created?: boolean; error?: string }> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n // Check if worktree already exists and is valid\n if (await worktreeExists(baseDir)) {\n return { success: true, path: worktreePath, created: false };\n }\n\n // Remove any stale worktree directory\n try {\n await rm(worktreePath, { recursive: true, force: true });\n } catch {\n // Ignore errors - directory might not exist\n }\n\n try {\n // Check if local branch exists\n const localExists = await branchExists(syncBranch);\n if (localExists) {\n // Create worktree on local branch (no --detach, so commits update the branch)\n // Note: Don't use --detach here - we want commits to update tbd-sync branch\n await git('-C', baseDir, 'worktree', 'add', worktreePath, syncBranch);\n return { success: true, path: worktreePath, created: true };\n }\n\n // Check if remote branch exists\n const remoteExists = await remoteBranchExists(remote, syncBranch);\n if (remoteExists) {\n // Fetch and create worktree from remote branch with local tracking branch\n await git('-C', baseDir, 'fetch', remote, syncBranch);\n // Use -b to create local branch tracking remote, not --detach\n // This ensures commits update the local branch which can then be pushed\n await git(\n '-C',\n baseDir,\n 'worktree',\n 'add',\n '-b',\n syncBranch,\n worktreePath,\n `${remote}/${syncBranch}`,\n );\n return { success: true, path: worktreePath, created: true };\n }\n\n // No branch exists - create orphan worktree (requires Git 2.42+)\n // Syntax: git worktree add --orphan -b <branch> <path>\n await requireGitVersion();\n await git('-C', baseDir, 'worktree', 'add', '--orphan', '-b', syncBranch, worktreePath);\n\n // Initialize the data-sync directory structure in the worktree\n const dataSyncPath = join(worktreePath, TBD_DIR, DATA_SYNC_DIR_NAME);\n await mkdir(join(dataSyncPath, 'issues'), { recursive: true });\n await mkdir(join(dataSyncPath, 'mappings'), { recursive: true });\n await mkdir(join(dataSyncPath, 'attic', 'conflicts'), { recursive: true });\n\n // Create initial commit in worktree\n await writeFile(join(dataSyncPath, 'meta.yml'), 'schema_version: 1\\n');\n await writeFile(join(dataSyncPath, 'issues', '.gitkeep'), '');\n await writeFile(join(dataSyncPath, 'mappings', '.gitkeep'), '');\n\n // Stage and commit the initial structure\n // Use --no-verify to bypass parent repo hooks (lefthook, husky, etc.)\n await git('-C', worktreePath, 'add', '.');\n await git('-C', worktreePath, 'commit', '--no-verify', '-m', 'Initialize tbd-sync branch');\n\n return { success: true, path: worktreePath, created: true };\n } catch (error) {\n return {\n success: false,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n/\n Update the hidden worktree to latest sync branch state.\n * Called after sync operations to ensure worktree reflects current state.\n \n @param baseDir - The base directory of the repository\n * @param remote - The remote name (default: 'origin')\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n /\nexport async function updateWorktree(\n baseDir: string,\n remote = 'origin',\n syncBranch: string = SYNC_BRANCH,\n): Promise<{ success: boolean; error?: string }> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n // Ensure worktree exists\n if (!(await worktreeExists(baseDir))) {\n const initResult = await initWorktree(baseDir, remote, syncBranch);\n if (!initResult.success) {\n return { success: false, error: initResult.error };\n }\n }\n\n try {\n // Fetch latest from remote\n try {\n await git('-C', baseDir, 'fetch', remote, syncBranch);\n } catch {\n // Remote fetch may fail if offline - that's ok\n }\n\n // Get the latest commit on the sync branch\n let targetCommit: string;\n try {\n // Try local branch first\n targetCommit = await git('-C', baseDir, 'rev-parse', `refs/heads/${syncBranch}`);\n } catch {\n try {\n // Fall back to remote tracking branch\n targetCommit = await git(\n '-C',\n baseDir,\n 'rev-parse',\n `refs/remotes/${remote}/${syncBranch}`,\n );\n } catch {\n // No remote either - worktree is already at latest\n return { success: true };\n }\n }\n\n // Update worktree to that commit (detached HEAD)\n await git('-C', worktreePath, 'checkout', '--detach', targetCommit);\n\n return { success: true };\n } catch (error) {\n return {\n success: false,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n// =============================================================================\n// Branch Health Checks\n// See: tbd-design.md §2.3 Hidden Worktree Model, plan spec §4b\n// =============================================================================\n\n/\n Local branch health status.\n /\nexport interface LocalBranchHealth {\n exists: boolean;\n orphaned: boolean;\n head?: string;\n}\n\n/\n Check local sync branch health.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n \n @param syncBranch - The sync branch name (default: 'tbd-sync')\n * @returns Health status indicating if branch exists and has commits\n /\nexport async function checkLocalBranchHealth(\n syncBranch: string = SYNC_BRANCH,\n): Promise<LocalBranchHealth> {\n try {\n const head = await git('rev-parse', `refs/heads/${syncBranch}`);\n return { exists: true, orphaned: false, head: head.trim() };\n } catch {\n // Check if branch ref exists but is orphaned (no commits)\n try {\n await git('show-ref', '--verify', `refs/heads/${syncBranch}`);\n return { exists: true, orphaned: true };\n } catch {\n return { exists: false, orphaned: false };\n }\n }\n}\n\n/\n Remote branch health status.\n /\nexport interface RemoteBranchHealth {\n exists: boolean;\n diverged: boolean;\n head?: string;\n}\n\n/\n Check remote sync branch health.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n \n @param remote - The remote name (default: 'origin')\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n * @returns Health status indicating if remote branch exists and divergence state\n /\nexport async function checkRemoteBranchHealth(\n remote = 'origin',\n syncBranch: string = SYNC_BRANCH,\n): Promise<RemoteBranchHealth> {\n try {\n await git('fetch', remote, syncBranch);\n const head = await git('rev-parse', `refs/remotes/${remote}/${syncBranch}`);\n const remoteHead = head.trim();\n\n // Check for divergence (only if local branch exists)\n let diverged = false;\n try {\n const mergeBase = await git('merge-base', syncBranch, `${remote}/${syncBranch}`);\n const localHead = await git('rev-parse', syncBranch);\n\n // Diverged if merge-base is neither local nor remote HEAD\n diverged = mergeBase.trim() !== localHead.trim() && mergeBase.trim() !== remoteHead;\n } catch {\n // Local branch doesn't exist - can't be diverged\n diverged = false;\n }\n\n return { exists: true, diverged, head: remoteHead };\n } catch {\n return { exists: false, diverged: false };\n }\n}\n\n/\n Sync consistency status.\n /\nexport interface SyncConsistency {\n /* Worktree HEAD commit SHA /\n worktreeHead: string;\n /* Local branch HEAD commit SHA /\n localHead: string;\n /* Remote branch HEAD commit SHA /\n remoteHead: string;\n /* Whether worktree HEAD matches local branch HEAD /\n worktreeMatchesLocal: boolean;\n /* Number of commits local is ahead of remote /\n localAhead: number;\n /* Number of commits local is behind remote /\n localBehind: number;\n}\n\n/\n Check consistency between worktree, local branch, and remote.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n \n @param baseDir - The base directory of the repository\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n * @param remote - The remote name (default: 'origin')\n * @returns Consistency status with HEAD comparisons and ahead/behind counts\n /\nexport async function checkSyncConsistency(\n baseDir: string,\n syncBranch: string = SYNC_BRANCH,\n remote = 'origin',\n): Promise<SyncConsistency> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n // Get worktree HEAD\n const worktreeHead = await git('-C', worktreePath, 'rev-parse', 'HEAD').catch(() => '');\n\n // Get local branch HEAD\n const localHead = await git('-C', baseDir, 'rev-parse', syncBranch).catch(() => '');\n\n // Get remote branch HEAD\n const remoteHead = await git('-C', baseDir, 'rev-parse', `${remote}/${syncBranch}`).catch(\n () => '',\n );\n\n // Calculate ahead/behind counts\n let localAhead = 0;\n let localBehind = 0;\n\n if (localHead && remoteHead) {\n try {\n const aheadOutput = await git(\n '-C',\n baseDir,\n 'rev-list',\n '--count',\n `${remote}/${syncBranch}..${syncBranch}`,\n );\n localAhead = parseInt(aheadOutput.trim(), 10) \|\| 0;\n } catch {\n // Ignore errors\n }\n\n try {\n const behindOutput = await git(\n '-C',\n baseDir,\n 'rev-list',\n '--count',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n localBehind = parseInt(behindOutput.trim(), 10) \|\| 0;\n } catch {\n // Ignore errors\n }\n }\n\n return {\n worktreeHead: worktreeHead.trim(),\n localHead: localHead.trim(),\n remoteHead: remoteHead.trim(),\n worktreeMatchesLocal: worktreeHead.trim() === localHead.trim(),\n localAhead,\n localBehind,\n };\n}\n\n/\n Remove the hidden worktree.\n * Used by doctor --fix when worktree is corrupted.\n /\nexport async function removeWorktree(\n baseDir: string,\n): Promise<{ success: boolean; error?: string }> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n try {\n // First try to properly remove via git\n try {\n await git('-C', baseDir, 'worktree', 'remove', worktreePath, '--force');\n } catch {\n // If git worktree remove fails, just delete the directory\n await rm(worktreePath, { recursive: true, force: true });\n }\n\n // Prune stale worktree references\n await git('-C', baseDir, 'worktree', 'prune');\n\n return { success: true };\n } catch (error) {\n return {\n success: false,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n/\n Repair an unhealthy worktree.\n \n Follows decision tree from spec Appendix E:\n * - PRUNABLE: git worktree prune, then recreate\n * - CORRUPTED: backup to .tbd/backups/, remove, then recreate\n * - MISSING: just create\n \n See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n \n @param baseDir - The base directory of the repository\n * @param status - Current worktree health status\n * @param remote - The remote name (default: 'origin')\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n /\nexport async function repairWorktree(\n baseDir: string,\n status: 'missing' \| 'prunable' \| 'corrupted',\n remote = 'origin',\n syncBranch: string = SYNC_BRANCH,\n): Promise<{ success: boolean; path?: string; backedUp?: string; error?: string }> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n try {\n // Always prune stale worktree entries first for missing and prunable states\n // This ensures git's worktree list is clean before creating a new worktree\n if (status === 'missing' \|\| status === 'prunable') {\n await git('-C', baseDir, 'worktree', 'prune');\n }\n\n // Handle corrupted status: backup before removal\n if (status === 'corrupted') {\n const backupsDir = join(baseDir, TBD_DIR, 'backups');\n await mkdir(backupsDir, { recursive: true });\n\n const timestamp = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 19);\n const backupPath = join(backupsDir, `corrupted-worktree-backup-${timestamp}`);\n\n // Copy corrupted worktree to backup before removal\n try {\n await cp(worktreePath, backupPath, { recursive: true });\n } catch {\n // If copy fails, the directory might not exist or be accessible\n // Continue with repair anyway\n }\n\n // Remove the corrupted worktree\n await rm(worktreePath, { recursive: true, force: true });\n await git('-C', baseDir, 'worktree', 'prune');\n\n // Initialize fresh worktree\n const result = await initWorktree(baseDir, remote, syncBranch);\n return { ...result, backedUp: backupPath };\n }\n\n // For missing or prunable (after prune), just initialize\n const result = await initWorktree(baseDir, remote, syncBranch);\n return result;\n } catch (error) {\n return {\n success: false,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n/\n Ensure worktree is attached to sync branch, not detached HEAD.\n * Old tbd versions (pre-v0.1.9) created worktrees with --detach flag.\n * This repairs them automatically.\n \n @param worktreePath - Path to the worktree directory\n * @returns true if worktree was detached and repaired, false if already attached\n /\nexport async function ensureWorktreeAttached(worktreePath: string): Promise<boolean> {\n try {\n const currentBranch = await git('-C', worktreePath, 'branch', '--show-current').catch(() => '');\n\n if (!currentBranch) {\n // Detached HEAD - re-attach to sync branch\n // This is a one-time repair for repos created with old tbd versions\n await git('-C', worktreePath, 'checkout', SYNC_BRANCH);\n return true; // Was detached, now repaired\n }\n\n return false; // Already attached\n } catch (error) {\n // If we can't check/fix, that's a problem but don't fail the operation\n console.warn('Warning: Could not check worktree HEAD status:', error);\n return false;\n }\n}\n\n/\n Migrate data from wrong location (.tbd/data-sync/) to worktree.\n \n Used when data was incorrectly written to the direct path instead of the worktree.\n * Per spec Appendix E:\n * 1. Backup to .tbd/backups/\n * 2. Copy issues/mappings from .tbd/data-sync/ to worktree\n * 3. Commit in worktree\n * 4. Optionally remove wrong location data\n \n See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n \n @param baseDir - The base directory of the repository\n * @param removeSource - Whether to remove data from wrong location after migration\n /\nexport async function migrateDataToWorktree(\n baseDir: string,\n removeSource = false,\n): Promise<{\n success: boolean;\n migratedCount: number;\n backupPath?: string;\n error?: string;\n}> {\n const wrongPath = join(baseDir, TBD_DIR, DATA_SYNC_DIR_NAME);\n const correctPath = join(baseDir, WORKTREE_DIR, TBD_DIR, DATA_SYNC_DIR_NAME);\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n try {\n // Ensure worktree is attached to sync branch (repair old tbd repos)\n await ensureWorktreeAttached(worktreePath);\n // Check if there's data in the wrong location\n const wrongIssuesPath = join(wrongPath, 'issues');\n const wrongMappingsPath = join(wrongPath, 'mappings');\n\n let issueFiles: string[] = [];\n let mappingFiles: string[] = [];\n\n try {\n const { readdir } = await import('node:fs/promises');\n issueFiles = await readdir(wrongIssuesPath).catch(() => []);\n mappingFiles = await readdir(wrongMappingsPath).catch(() => []);\n } catch {\n // Directory doesn't exist\n }\n\n // Filter out .gitkeep files\n issueFiles = issueFiles.filter((f) => f !== '.gitkeep');\n mappingFiles = mappingFiles.filter((f) => f !== '.gitkeep');\n\n if (issueFiles.length === 0 && mappingFiles.length === 0) {\n return { success: true, migratedCount: 0 };\n }\n\n // Step 1: Backup to .tbd/backups/\n const backupsDir = join(baseDir, TBD_DIR, 'backups');\n await mkdir(backupsDir, { recursive: true });\n\n const timestamp = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 19);\n const backupPath = join(backupsDir, `data-sync-backup-${timestamp}`);\n\n await cp(wrongPath, backupPath, { recursive: true });\n\n // Step 2: Copy issues and mappings to worktree\n const correctIssuesPath = join(correctPath, 'issues');\n const correctMappingsPath = join(correctPath, 'mappings');\n\n await mkdir(correctIssuesPath, { recursive: true });\n await mkdir(correctMappingsPath, { recursive: true });\n\n for (const file of issueFiles) {\n await cp(join(wrongIssuesPath, file), join(correctIssuesPath, file));\n }\n\n for (const file of mappingFiles) {\n await cp(join(wrongMappingsPath, file), join(correctMappingsPath, file));\n }\n\n // Step 3: Commit in worktree (if there are changes)\n // Use --no-verify to bypass parent repo hooks (lefthook, husky, etc.)\n const totalFiles = issueFiles.length + mappingFiles.length;\n await git('-C', worktreePath, 'add', '-A');\n\n // Check if there are staged changes before committing\n const hasChanges = await git('-C', worktreePath, 'diff', '--cached', '--quiet')\n .then(() => false)\n .catch(() => true);\n\n if (hasChanges) {\n await git(\n '-C',\n worktreePath,\n 'commit',\n '--no-verify',\n '-m',\n `tbd: migrate ${totalFiles} file(s) from incorrect location`,\n );\n }\n // If no changes, files were already migrated - that's fine\n\n // Step 4: Optionally remove wrong location data\n if (removeSource) {\n // Remove issue and mapping files, but keep directory structure\n for (const file of issueFiles) {\n await rm(join(wrongIssuesPath, file));\n }\n for (const file of mappingFiles) {\n await rm(join(wrongMappingsPath, file));\n }\n }\n\n return {\n success: true,\n migratedCount: totalFiles,\n backupPath,\n };\n } catch (error) {\n return {\n success: false,\n migratedCount: 0,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n","/\n `tbd init` - Initialize tbd in a repository.\n \n See: tbd-design.md §4.3 Initialization\n /\n\nimport { Command } from 'commander';\nimport { mkdir, stat } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { ensureGitignorePatterns } from '../../utils/gitignore-utils.js';\nimport { CLIError, ValidationError } from '../lib/errors.js';\nimport { VERSION } from '../lib/version.js';\nimport { initConfig } from '../../file/config.js';\nimport {\n TBD_DIR,\n WORKTREE_DIR_NAME,\n DATA_SYNC_DIR_NAME,\n SYNC_BRANCH,\n TBD_SHORTCUTS_SYSTEM,\n TBD_SHORTCUTS_STANDARD,\n TBD_GUIDELINES_DIR,\n TBD_TEMPLATES_DIR,\n TBD_DOCS_DIR,\n} from '../../lib/paths.js';\nimport {\n initWorktree,\n checkGitVersion,\n checkWorktreeHealth,\n MIN_GIT_VERSION,\n} from '../../file/git.js';\n\ninterface InitOptions {\n prefix?: string;\n syncBranch?: string;\n remote?: string;\n}\n\nclass InitHandler extends BaseCommand {\n async run(options: InitOptions): Promise<void> {\n const cwd = process.cwd();\n\n // Check if already initialized\n try {\n await stat(join(cwd, TBD_DIR));\n throw new CLIError('tbd is already initialized in this directory');\n } catch (error) {\n // Not initialized - continue (unless it's our CLIError)\n if (error instanceof CLIError) throw error;\n }\n\n // Validate prefix is provided\n if (!options.prefix) {\n throw new ValidationError(\n 'The --prefix option is required\\n\\n' +\n 'Usage: tbd init --prefix=<name>\\n\\n' +\n 'The prefix is used for display IDs (e.g., proj-a7k2, myapp-b3m9)\\n' +\n 'Choose a short 2-4 letter prefix for your project (e.g., tbd, myp).\\n\\n' +\n 'For full setup with integrations: tbd setup --auto --prefix=<name>',\n );\n }\n\n if (this.checkDryRun('Would initialize tbd repository', options)) {\n return;\n }\n\n await this.execute(async () => {\n // 1. Create .tbd/ directory with config.yml\n // Note: options.prefix is validated to be non-null above\n await initConfig(cwd, VERSION, options.prefix!);\n this.output.debug(`Created ${TBD_DIR}/config.yml with prefix '${options.prefix}'`);\n\n // 2. Create .tbd/.gitignore (idempotent)\n // Per spec: Must ignore docs/, data-sync-worktree/, and data-sync/\n await ensureGitignorePatterns(join(cwd, TBD_DIR, '.gitignore'), [\n '# Installed documentation (regenerated on setup)',\n 'docs/',\n '',\n '# Hidden worktree for tbd-sync branch',\n `${WORKTREE_DIR_NAME}/`,\n '',\n '# Data sync directory (only exists in worktree)',\n `${DATA_SYNC_DIR_NAME}/`,\n '',\n '# Local state',\n 'state.yml',\n '',\n '# Migration backups (local only, not synced)',\n 'backups/',\n '',\n '# Temporary files',\n '.tmp',\n '.temp',\n ]);\n this.output.debug(`Created ${TBD_DIR}/.gitignore`);\n\n // 3. Create docs directories for shortcuts, guidelines, and templates\n await mkdir(join(cwd, TBD_SHORTCUTS_SYSTEM), { recursive: true });\n await mkdir(join(cwd, TBD_SHORTCUTS_STANDARD), { recursive: true });\n await mkdir(join(cwd, TBD_GUIDELINES_DIR), { recursive: true });\n await mkdir(join(cwd, TBD_TEMPLATES_DIR), { recursive: true });\n this.output.debug(`Created ${TBD_DOCS_DIR}/ directories`);\n\n // 4. Initialize the hidden worktree for tbd-sync branch\n // This creates .tbd/data-sync-worktree/ with the sync branch checkout\n const remote = options.remote ?? 'origin';\n const syncBranch = options.syncBranch ?? SYNC_BRANCH;\n\n // Check Git version before attempting worktree creation\n // Git 2.42+ is required for --orphan worktree support\n try {\n const { version, supported } = await checkGitVersion();\n if (!supported) {\n const versionStr = `${version.major}.${version.minor}.${version.patch}`;\n throw new CLIError(\n `Git ${versionStr} detected. Git ${MIN_GIT_VERSION}+ is required for tbd.\\n\\n` +\n `tbd requires Git 2.42+ for orphan worktree support.\\n` +\n `Please upgrade Git: https://git-scm.com/downloads`,\n );\n }\n this.output.debug(`Git version ${version.major}.${version.minor}.${version.patch} OK`);\n } catch (error) {\n // If git is not installed at all, let worktree init handle it\n if (error instanceof CLIError) throw error;\n this.output.debug(`Git version check skipped: ${(error as Error).message}`);\n }\n\n const worktreeResult = await initWorktree(cwd, remote, syncBranch);\n\n if (worktreeResult.success) {\n if (worktreeResult.created) {\n this.output.debug(`Created hidden worktree at ${TBD_DIR}/${WORKTREE_DIR_NAME}/`);\n } else {\n this.output.debug(`Worktree already exists at ${TBD_DIR}/${WORKTREE_DIR_NAME}/`);\n }\n\n // Verify worktree health after creation (prevents silent failures)\n const health = await checkWorktreeHealth(cwd);\n if (!health.valid) {\n this.output.warn(\n `Worktree created but failed verification (status: ${health.status}). ` +\n `Run 'tbd doctor' to diagnose.`,\n );\n }\n } else {\n // Worktree creation failed - this is ok if not in a git repo\n // Log warning but don't fail init (supports non-git usage)\n this.output.debug(`Note: Worktree not created (${worktreeResult.error})`);\n }\n }, 'Failed to initialize tbd');\n\n this.output.data({ initialized: true, version: VERSION, prefix: options.prefix }, () => {\n this.output.success(`Initialized tbd repository (prefix: ${options.prefix})`);\n // Only show next steps if not in quiet mode\n if (!this.output.isQuiet()) {\n console.log('');\n console.log('Next steps:');\n console.log(' git add .tbd/ && git commit -m \"Initialize tbd\"');\n console.log(' tbd setup --auto # Optional: configure agent integrations');\n }\n });\n }\n}\n\nexport const initCommand = new Command('init')\n .description('Initialize tbd in a git repository')\n .option('--prefix <name>', 'Project prefix for display IDs (e.g., \"proj\", \"myapp\")')\n .option('--sync-branch <name>', 'Sync branch name (default: tbd-sync)')\n .option('--remote <name>', 'Remote name (default: origin)')\n .action(async (options, command) => {\n const handler = new InitHandler(command);\n await handler.run(options);\n });\n","/\n ID generation and validation utilities.\n \n The system uses dual IDs for usability:\n * - Internal ID: is-{ulid} - ULID-based (26 lowercase chars), stored in files\n * - External ID: {prefix}-{short} - 4-5 base36 chars for CLI display/input\n \n For Beads compatibility, bd- prefix is accepted on input for external IDs.\n \n See: tbd-design.md §2.5 ID Generation\n /\n\nimport { ulid } from 'ulid';\nimport { randomBytes } from 'node:crypto';\n\n// =============================================================================\n// Branded Types for Type-Safe ID Handling\n// =============================================================================\n\n/\n Branded type for internal issue IDs (is-{ulid} format).\n \n Internal IDs are stored in files and used as the canonical identifier.\n * Format: is-{26 lowercase alphanumeric chars}\n * Example: is-01hx5zzkbkactav9wevgemmvrz\n \n Use this type when:\n * - Reading/writing issue files\n * - Storing parent_id, dependencies, child_order_hints\n * - Passing IDs between internal functions\n /\ndeclare const InternalIssueIdBrand: unique symbol;\nexport type InternalIssueId = string & { [InternalIssueIdBrand]: never };\n\n/\n Branded type for display issue IDs ({prefix}-{short} format).\n \n Display IDs are shown to users and accepted as CLI input.\n * Format: {prefix}-{short} where short is typically 4 base36 chars\n * Example: tbd-a7k2, bd-100\n \n Use this type when:\n * - Formatting output for users\n * - Accepting user input (before resolution)\n * - Building tree views for display\n /\ndeclare const DisplayIssueIdBrand: unique symbol;\nexport type DisplayIssueId = string & { [DisplayIssueIdBrand]: never };\n\n/\n Cast a string to InternalIssueId after validation.\n * Use this when you've validated that a string is a valid internal ID.\n /\nexport function asInternalId(id: string): InternalIssueId {\n return id as InternalIssueId;\n}\n\n/\n Cast a string to DisplayIssueId.\n * Use this when formatting an ID for display.\n /\nexport function asDisplayId(id: string): DisplayIssueId {\n return id as DisplayIssueId;\n}\n\n/\n Prefix for internal IDs (ULID-based).\n * All internal IDs are formatted as: {INTERNAL_ID_PREFIX}-{ulid}\n /\nexport const INTERNAL_ID_PREFIX = 'is';\n\n/\n Length of internal ID prefix including the hyphen (e.g., \"is-\" = 3).\n /\nexport const INTERNAL_ID_PREFIX_LENGTH = INTERNAL_ID_PREFIX.length + 1;\n\n/\n Construct an internal ID from a ULID.\n \n @param ulidValue - The ULID (26 chars)\n * @returns Internal ID in format {prefix}-{ulid}\n /\nexport function makeInternalId(ulidValue: string): InternalIssueId {\n return `${INTERNAL_ID_PREFIX}-${ulidValue.toLowerCase()}` as InternalIssueId;\n}\n\n/\n Generate a unique internal ID using ULID.\n * Format: is-{ulid} (26 lowercase alphanumeric chars)\n * Example: is-01hx5zzkbkactav9wevgemmvrz\n \n ULID provides:\n * - Time-ordered sorting (48-bit timestamp)\n * - 80-bit randomness (no collisions)\n * - Lexicographic sort = chronological order\n /\nexport function generateInternalId(): InternalIssueId {\n return makeInternalId(ulid());\n}\n\n/\n Generate a short ID for external display.\n * Format: base36 characters (a-z, 0-9)\n * Example: a7k2\n \n @param length - Number of characters (default 4)\n /\nexport function generateShortId(length = 4): string {\n const chars = '0123456789abcdefghijklmnopqrstuvwxyz';\n let result = '';\n const bytes = randomBytes(length);\n for (let i = 0; i < length; i++) {\n result += chars[bytes[i]! % 36];\n }\n return result;\n}\n\n// Regex pattern for validating internal IDs - built from prefix constant\nconst INTERNAL_ID_PATTERN = new RegExp(`^${INTERNAL_ID_PREFIX}-[0-9a-z]{26}$`);\n\n// Expected length of a full internal ID (prefix + hyphen + 26-char ULID)\nconst INTERNAL_ID_LENGTH = INTERNAL_ID_PREFIX_LENGTH + 26;\n\n/\n Validate an internal issue ID matches the ULID format.\n * Format: {prefix}-{26 lowercase alphanumeric chars}\n /\nexport function validateIssueId(id: string): boolean {\n return INTERNAL_ID_PATTERN.test(id);\n}\n\n/\n Validate a short/external ID format.\n * Format: 1+ base36 characters (typically 4 for new IDs, but imports may preserve longer IDs).\n /\nexport function validateShortId(id: string): boolean {\n return /^[0-9a-z]+$/.test(id);\n}\n\n/\n Check if an input looks like an internal ID (ULID-based).\n /\nexport function isInternalId(input: string): boolean {\n const lower = input.toLowerCase();\n // Check if it starts with the internal prefix and has correct length\n const prefixWithHyphen = `${INTERNAL_ID_PREFIX}-`;\n if (lower.startsWith(prefixWithHyphen) && lower.length === INTERNAL_ID_LENGTH) {\n return INTERNAL_ID_PATTERN.test(lower);\n }\n return false;\n}\n\n/\n Check if an input looks like a short/external ID.\n * Returns true for IDs like \"a7k2\", \"bd-a7k2\", \"100\", \"tbd-100\".\n * Short IDs are 16 characters or less (ULIDs are 26 characters).\n /\nexport function isShortId(input: string): boolean {\n const lower = input.toLowerCase();\n // Strip prefix if present\n const stripped = lower.replace(/^[a-z]+-/, '');\n // Must be 1-16 alphanumeric chars (short IDs, not ULIDs which are 26 chars)\n return /^[0-9a-z]+$/.test(stripped) && stripped.length >= 1 && stripped.length <= 16;\n}\n\n/\n Extract the short ID portion from an external ID.\n * Examples:\n * \"tbd-100\" -> \"100\"\n * \"bd-a7k2\" -> \"a7k2\"\n * \"a7k2\" -> \"a7k2\"\n * \"100\" -> \"100\"\n /\nexport function extractShortId(externalId: string): string {\n return externalId.toLowerCase().replace(/^[a-z]+-/, '');\n}\n\n/\n Extract the prefix portion from an external ID.\n * Returns the prefix (letters before the hyphen) or null if no prefix found.\n * Examples:\n * \"tbd-100\" -> \"tbd\"\n * \"bd-a7k2\" -> \"bd\"\n * \"TBD-100\" -> \"tbd\" (normalized to lowercase)\n * \"a7k2\" -> null (no prefix)\n * \"100\" -> null (no prefix)\n /\nexport function extractPrefix(externalId: string): string \| null {\n const match = /^([a-zA-Z]+)-/.exec(externalId);\n return match?.[1]?.toLowerCase() ?? null;\n}\n\n/\n Extract the ULID portion from an internal ID.\n \n Internal IDs have the format: {prefix}-{ulid}\n * This function strips any prefix to return just the ULID.\n \n Examples:\n * \"is-01hx5zzkbkactav9wevgemmvrz\" -> \"01hx5zzkbkactav9wevgemmvrz\"\n * \"01hx5zzkbkactav9wevgemmvrz\" -> \"01hx5zzkbkactav9wevgemmvrz\" (no prefix)\n \n @param internalId - The internal ID (with or without prefix)\n * @returns The ULID portion without any prefix\n /\nexport function extractUlidFromInternalId(internalId: string): string {\n // Strip any prefix in format {letters}- (e.g., \"is-\", \"bd-\")\n return internalId.toLowerCase().replace(/^[a-z]+-/, '');\n}\n\n/* Prefix used in Beads for compatibility /\nconst BEADS_COMPAT_PREFIX = 'bd';\n\n/\n Normalize an internal issue ID.\n \n This function expects a full internal ID ({prefix}-{ulid}).\n * If given a short ID, it won't be able to resolve it without\n * access to the ID mapping.\n \n Handles:\n * - Uppercase (converts to lowercase)\n * - Ensures internal ID prefix\n * - Beads compatibility (bd- prefix)\n /\nexport function normalizeIssueId(input: string): string {\n const lower = input.toLowerCase();\n const internalPrefixWithHyphen = `${INTERNAL_ID_PREFIX}-`;\n const beadsPrefixWithHyphen = `${BEADS_COMPAT_PREFIX}-`;\n\n // If already a valid internal ID, return as-is\n if (validateIssueId(lower)) {\n return lower;\n }\n\n // If it starts with internal prefix but wrong length, might be corrupted\n if (lower.startsWith(internalPrefixWithHyphen)) {\n return lower; // Return as-is, let validation fail later\n }\n\n // If it starts with bd- (Beads compat), convert prefix\n if (lower.startsWith(beadsPrefixWithHyphen)) {\n const rest = lower.slice(beadsPrefixWithHyphen.length);\n if (rest.length === 26) {\n return makeInternalId(rest);\n }\n // Short ID - can't resolve without mapping\n return lower;\n }\n\n // Bare ID without prefix\n if (lower.length === 26 && /^[0-9a-z]{26}$/.test(lower)) {\n return makeInternalId(lower);\n }\n\n // Can't normalize - return as-is\n return lower;\n}\n\nimport type { IdMapping } from '../file/id-mapping.js';\n\n/\n Format an internal ID for display with the configured prefix.\n \n Uses the short ID (4 chars) from the mapping.\n * Throws an error if the mapping is missing or doesn't contain the ID.\n \n IMPORTANT: All user-facing output MUST use short IDs, never internal ULIDs.\n * If you see a ULID in user output, it's a bug.\n \n @param internalId - The internal ID (is-{ulid})\n * @param mapping - ID mapping for short ID lookup (required)\n * @param prefix - Display prefix (should come from config.display.id_prefix; defaults to 'tbd' as fallback)\n * @throws Error if mapping is missing or ID not found in mapping\n /\nexport function formatDisplayId(\n internalId: InternalIssueId \| string,\n mapping: IdMapping,\n prefix = 'tbd',\n): DisplayIssueId {\n // Extract the ULID portion\n const ulidPart = extractUlidFromInternalId(internalId);\n\n // Get short ID from mapping\n const shortId = mapping.ulidToShort.get(ulidPart);\n if (!shortId) {\n throw new Error(\n `No short ID mapping found for internal ID: ${internalId}. ` +\n `This is a bug - all issues must have a short ID mapping.`,\n );\n }\n\n return `${prefix}-${shortId}` as DisplayIssueId;\n}\n\n/\n Format an ID for debug output, showing both public and internal IDs.\n \n @param internalId - The internal ID (is-{ulid})\n * @param mapping - ID mapping for short ID lookup\n * @param prefix - Display prefix (should come from config.display.id_prefix; defaults to 'tbd' as fallback)\n /\nexport function formatDebugId(\n internalId: InternalIssueId \| string,\n mapping: IdMapping,\n prefix = 'tbd',\n): string {\n const displayId = formatDisplayId(internalId, mapping, prefix);\n return `${displayId} (${internalId})`;\n}\n","/\n Storage layer for issue files.\n \n Provides atomic file operations and issue CRUD operations.\n * All operations work on the hidden worktree at .tbd/data-sync/issues/.\n \n See: tbd-design.md §3.2 Storage Layer\n /\n\nimport { readFile, unlink, readdir } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport { writeFile } from 'atomically';\n\nimport type { Issue } from '../lib/types.js';\nimport { parseIssue, serializeIssue } from './parser.js';\n\n/\n Get the path to an issue file.\n /\nfunction getIssuePath(baseDir: string, id: string): string {\n return join(baseDir, 'issues', `${id}.md`);\n}\n\n/\n Read an issue from the worktree.\n * @throws If the issue file doesn't exist or is invalid.\n /\nexport async function readIssue(baseDir: string, id: string): Promise<Issue> {\n const filePath = getIssuePath(baseDir, id);\n const content = await readFile(filePath, 'utf-8');\n return parseIssue(content);\n}\n\n/\n Write an issue to the worktree.\n * Uses atomic write to prevent corruption.\n /\nexport async function writeIssue(baseDir: string, issue: Issue): Promise<void> {\n const filePath = getIssuePath(baseDir, issue.id);\n const content = serializeIssue(issue);\n await writeFile(filePath, content);\n}\n\n/\n List all issues in the worktree.\n * Returns empty array if issues directory doesn't exist.\n \n Uses parallel file reading for better performance with many issues.\n /\nexport async function listIssues(baseDir: string): Promise<Issue[]> {\n const issuesDir = join(baseDir, 'issues');\n\n let files: string[];\n try {\n files = await readdir(issuesDir);\n } catch {\n // Directory doesn't exist - return empty\n return [];\n }\n\n // Filter to only .md files\n const mdFiles = files.filter((f) => f.endsWith('.md'));\n\n // Read all files in parallel for better I/O performance\n const fileContents = await Promise.all(\n mdFiles.map(async (file) => {\n const filePath = join(issuesDir, file);\n try {\n const content = await readFile(filePath, 'utf-8');\n return { file, content };\n } catch {\n return { file, content: null };\n }\n }),\n );\n\n // Parse issues (filter out failed reads)\n const issues: Issue[] = [];\n for (const { file, content } of fileContents) {\n if (content === null) continue;\n try {\n const issue = parseIssue(content);\n issues.push(issue);\n } catch (error) {\n // Skip invalid files with a warning\n console.warn(`Skipping invalid issue file: ${file}`, error);\n }\n }\n\n return issues;\n}\n\n/\n Delete an issue from the worktree.\n * Does not throw if issue doesn't exist.\n /\nexport async function deleteIssue(baseDir: string, id: string): Promise<void> {\n const filePath = getIssuePath(baseDir, id);\n try {\n await unlink(filePath);\n } catch (error) {\n // Ignore ENOENT (file doesn't exist)\n if ((error as NodeJS.ErrnoException).code !== 'ENOENT') {\n throw error;\n }\n }\n}\n","/\n Natural sort utilities.\n \n Provides alphanumeric sorting where numeric portions are sorted numerically.\n * Similar to `sort -V` (version sort) or `sort -n` for numbers.\n \n Examples:\n * [\"1\", \"2\", \"9\", \"10\", \"11\"] instead of [\"1\", \"10\", \"11\", \"2\", \"9\"]\n * [\"a1\", \"a2\", \"a10\"] instead of [\"a1\", \"a10\", \"a2\"]\n * [\"file1.txt\", \"file2.txt\", \"file10.txt\"] instead of [\"file1.txt\", \"file10.txt\", \"file2.txt\"]\n /\n\n/\n Split a string into alternating runs of digits and non-digits.\n * @param str - The string to split\n * @returns Array of [isNumeric, value] tuples\n /\nfunction splitIntoChunks(str: string): [boolean, string][] {\n const chunks: [boolean, string][] = [];\n let current = '';\n let currentIsNumeric: boolean \| null = null;\n\n for (const char of str) {\n const isDigit = char >= '0' && char <= '9';\n\n if (currentIsNumeric === null) {\n // First character\n currentIsNumeric = isDigit;\n current = char;\n } else if (isDigit === currentIsNumeric) {\n // Same type, continue accumulating\n current += char;\n } else {\n // Type changed, push current chunk and start new one\n chunks.push([currentIsNumeric, current]);\n currentIsNumeric = isDigit;\n current = char;\n }\n }\n\n // Push final chunk\n if (current) {\n chunks.push([currentIsNumeric!, current]);\n }\n\n return chunks;\n}\n\n/\n Compare two strings using natural (alphanumeric) ordering.\n \n Numeric portions are compared numerically, non-numeric portions are\n * compared lexicographically (case-insensitive). Numbers sort before letters\n * when they appear at the same position in mixed comparisons, matching\n * the behavior of `sort -V` (version sort).\n \n @param a - First string\n * @param b - Second string\n * @returns Negative if a < b, positive if a > b, zero if equal\n /\nexport function naturalCompare(a: string, b: string): number {\n // Handle empty strings\n if (!a && !b) return 0;\n if (!a) return -1;\n if (!b) return 1;\n\n const chunksA = splitIntoChunks(a);\n const chunksB = splitIntoChunks(b);\n\n const minLen = Math.min(chunksA.length, chunksB.length);\n\n for (let i = 0; i < minLen; i++) {\n const [isNumericA, valueA] = chunksA[i]!;\n const [isNumericB, valueB] = chunksB[i]!;\n\n if (isNumericA && isNumericB) {\n // Both are numeric - compare as numbers\n const numA = parseInt(valueA, 10);\n const numB = parseInt(valueB, 10);\n if (numA !== numB) {\n return numA - numB;\n }\n // If numerically equal but different strings (e.g., \"01\" vs \"1\"),\n // prefer shorter (fewer leading zeros)\n if (valueA.length !== valueB.length) {\n return valueA.length - valueB.length;\n }\n } else if (!isNumericA && !isNumericB) {\n // Both are non-numeric - compare lexicographically (case-insensitive)\n const lowerA = valueA.toLowerCase();\n const lowerB = valueB.toLowerCase();\n if (lowerA !== lowerB) {\n return lowerA.localeCompare(lowerB);\n }\n // Same when lowercased - they're equal for sorting purposes\n } else {\n // Mixed: numeric comes before non-numeric\n // (so \"1\" comes before \"a\" at the same position)\n // This matches `sort -V` behavior\n return isNumericA ? -1 : 1;\n }\n }\n\n // All compared chunks are equal, shorter string comes first\n return chunksA.length - chunksB.length;\n}\n\n/\n Sort an array of strings using natural (alphanumeric) ordering.\n \n @param arr - Array to sort\n * @returns New sorted array (does not mutate original)\n /\nexport function naturalSort(arr: readonly string[]): string[] {\n return [...arr].sort(naturalCompare);\n}\n\n/\n Sort an array of objects by a string key using natural ordering.\n \n @param arr - Array to sort\n * @param keyFn - Function to extract the sort key from each element\n * @returns New sorted array (does not mutate original)\n /\nexport function naturalSortBy<T>(arr: readonly T[], keyFn: (item: T) => string): T[] {\n return [...arr].sort((a, b) => naturalCompare(keyFn(a), keyFn(b)));\n}\n","/\n ID mapping management for short public IDs.\n \n Maps 4-char base36 short IDs to 26-char ULIDs.\n * Stored in .tbd/data-sync/mappings/ids.yml\n \n See: tbd-design.md §2.5 ID Generation\n /\n\nimport { readFile, mkdir } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport { writeFile } from 'atomically';\nimport { parse as parseYaml, stringify as stringifyYaml } from 'yaml';\n\nimport {\n generateShortId,\n extractUlidFromInternalId,\n makeInternalId,\n isInternalId,\n extractShortId,\n asInternalId,\n type InternalIssueId,\n} from '../lib/ids.js';\nimport { naturalSort } from '../lib/sort.js';\n\n/\n ID mapping from short ID to ULID.\n * Format in ids.yml:\n * a7k2: 01hx5zzkbkactav9wevgemmvrz\n * b3m9: 01hx5zzkbkbctav9wevgemmvrz\n /\nexport interface IdMapping {\n shortToUlid: Map<string, string>;\n ulidToShort: Map<string, string>;\n}\n\n/\n Get the path to the ids.yml mapping file.\n /\nfunction getMappingPath(baseDir: string): string {\n return join(baseDir, 'mappings', 'ids.yml');\n}\n\n/\n Load the ID mapping from disk.\n * Returns empty mapping if file doesn't exist.\n /\nexport async function loadIdMapping(baseDir: string): Promise<IdMapping> {\n const filePath = getMappingPath(baseDir);\n\n let content: string;\n try {\n content = await readFile(filePath, 'utf-8');\n } catch {\n // File doesn't exist - return empty mapping\n return {\n shortToUlid: new Map(),\n ulidToShort: new Map(),\n };\n }\n\n const data = (parseYaml(content) as Record<string, string>) \|\| {};\n\n const shortToUlid = new Map<string, string>();\n const ulidToShort = new Map<string, string>();\n\n for (const [shortId, ulid] of Object.entries(data)) {\n shortToUlid.set(shortId, ulid);\n ulidToShort.set(ulid, shortId);\n }\n\n return { shortToUlid, ulidToShort };\n}\n\n/\n Save the ID mapping to disk.\n /\nexport async function saveIdMapping(baseDir: string, mapping: IdMapping): Promise<void> {\n const filePath = getMappingPath(baseDir);\n\n // Ensure directory exists\n await mkdir(dirname(filePath), { recursive: true });\n\n // Convert Map to sorted object for deterministic output\n // Use natural sort so \"1\", \"2\", \"10\" sorts correctly (not \"1\", \"10\", \"2\")\n const data: Record<string, string> = {};\n const sortedKeys = naturalSort(Array.from(mapping.shortToUlid.keys()));\n for (const key of sortedKeys) {\n data[key] = mapping.shortToUlid.get(key)!;\n }\n\n const content = stringifyYaml(data);\n await writeFile(filePath, content);\n}\n\n/\n Calculate the optimal short ID length based on existing ID count.\n \n At 50K issues, switches from 4-char to 5-char IDs to keep\n * collision probability low (~3% per attempt with 4 chars at 50K).\n \n With 10 retries per length, actual failure probability is astronomically low.\n /\nexport function calculateOptimalLength(existingCount: number): number {\n return existingCount < 50_000 ? 4 : 5;\n}\n\n/\n Generate a unique short ID that doesn't collide with existing ones.\n \n Calculates optimal length (4 or 5 chars) based on existing ID count,\n * then retries with the next length if collisions occur.\n \n @returns The new short ID\n * @throws If unable to generate a unique ID after max attempts\n /\nexport function generateUniqueShortId(mapping: IdMapping): string {\n const ATTEMPTS_PER_LENGTH = 10;\n const existingCount = mapping.shortToUlid.size;\n const optimalLength = calculateOptimalLength(existingCount);\n\n // Try optimal length first, then fall back to longer if needed\n for (const length of [optimalLength, optimalLength + 1]) {\n for (let attempt = 0; attempt < ATTEMPTS_PER_LENGTH; attempt++) {\n const shortId = generateShortId(length);\n if (!mapping.shortToUlid.has(shortId)) {\n return shortId;\n }\n }\n }\n\n throw new Error(\n `Failed to generate unique short ID after 20 attempts with ${existingCount} existing IDs. ` +\n `This should be extremely rare - please report if you see this error.`,\n );\n}\n\n/\n Register a new ID mapping.\n * @param ulid - The ULID (without is- prefix)\n * @param shortId - The short ID (4 chars)\n /\nexport function addIdMapping(mapping: IdMapping, ulid: string, shortId: string): void {\n mapping.shortToUlid.set(shortId, ulid);\n mapping.ulidToShort.set(ulid, shortId);\n}\n\n/\n Get the short ID for a ULID.\n * @param ulid - The ULID (without is- prefix)\n * @returns The short ID, or undefined if not found\n /\nexport function getShortId(mapping: IdMapping, ulid: string): string \| undefined {\n return mapping.ulidToShort.get(ulid);\n}\n\n/\n Get the ULID for a short ID.\n * @param shortId - The short ID\n * @returns The ULID (without is- prefix), or undefined if not found\n /\nexport function getUlid(mapping: IdMapping, shortId: string): string \| undefined {\n return mapping.shortToUlid.get(shortId);\n}\n\n/\n Check if a short ID exists in the mapping.\n /\nexport function hasShortId(mapping: IdMapping, shortId: string): boolean {\n return mapping.shortToUlid.has(shortId);\n}\n\n/\n Create a short ID mapping for a new internal ID.\n * Generates a unique short ID and registers it in the mapping.\n \n @param internalId - The internal ID (is-{ulid})\n * @param mapping - The ID mapping to update\n * @returns The generated short ID\n /\nexport function createShortIdMapping(internalId: string, mapping: IdMapping): string {\n // Extract ULID from internal ID (remove prefix)\n const ulid = extractUlidFromInternalId(internalId);\n\n // Check if already mapped\n const existing = mapping.ulidToShort.get(ulid);\n if (existing) {\n return existing;\n }\n\n // Generate unique short ID\n const shortId = generateUniqueShortId(mapping);\n\n // Register mapping\n addIdMapping(mapping, ulid, shortId);\n\n return shortId;\n}\n\n/\n Resolve any ID input to an internal ID ({prefix}-{ulid}).\n \n Handles:\n * - Internal IDs: {prefix}-{ulid} -> {prefix}-{ulid}\n * - Short IDs: a7k2 -> {prefix}-{ulid from mapping}\n * - Prefixed short IDs: bd-a7k2 -> {prefix}-{ulid from mapping}\n \n @param input - The ID input (short ID, prefixed short ID, or internal ID)\n * @param mapping - The ID mapping for short ID resolution\n * @returns The internal ID ({prefix}-{ulid})\n * @throws If the short ID is not found in the mapping\n /\nexport function resolveToInternalId(input: string, mapping: IdMapping): InternalIssueId {\n const lower = input.toLowerCase();\n\n // If it's already an internal ID, return it\n if (isInternalId(lower)) {\n return asInternalId(lower);\n }\n\n // Extract the short ID portion (strips any prefix like \"bd-\" or \"is-\")\n const shortId = extractShortId(lower);\n\n // If it's a full ULID (26 chars), it might be a bare internal ID\n if (shortId.length === 26 && /^[0-9a-z]{26}$/.test(shortId)) {\n return makeInternalId(shortId);\n }\n\n // Must be a short ID - look it up in the mapping\n const ulid = mapping.shortToUlid.get(shortId);\n if (!ulid) {\n throw new Error(`Unknown issue ID: ${input}. ` + `Short ID \"${shortId}\" not found in mapping.`);\n }\n\n return makeInternalId(ulid);\n}\n","/\n Priority formatting and parsing utilities.\n \n Priority values range from 0 (critical) to 4 (backlog).\n * Display format uses \"P\" prefix: P0, P1, P2, P3, P4.\n /\n\nimport type { createColors } from '../cli/lib/output.js';\n\n/\n Valid priority values.\n /\nexport const MIN_PRIORITY = 0;\nexport const MAX_PRIORITY = 4;\n\n/\n Format a priority number for display.\n * Always uses \"P\" prefix format.\n \n @example formatPriority(0) → \"P0\"\n * @example formatPriority(2) → \"P2\"\n /\nexport function formatPriority(priority: number): string {\n return `P${priority}`;\n}\n\n/\n Parse a priority string to a number.\n * Accepts both numeric (\"1\") and prefixed (\"P1\") formats.\n * Case-insensitive for prefixed format.\n \n @example parsePriority(\"P1\") → 1\n * @example parsePriority(\"p0\") → 0\n * @example parsePriority(\"2\") → 2\n * @example parsePriority(\"invalid\") → undefined\n \n @returns The priority number, or undefined if invalid.\n /\nexport function parsePriority(input: string): number \| undefined {\n const trimmed = input.trim().toUpperCase();\n if (!trimmed) return undefined;\n\n let numStr: string;\n if (trimmed.startsWith('P')) {\n // Prefixed format: P0, P1, etc.\n if (trimmed.length !== 2) return undefined;\n numStr = trimmed.slice(1);\n } else {\n // Numeric format: 0, 1, etc.\n numStr = trimmed;\n }\n\n const num = parseInt(numStr, 10);\n if (isNaN(num) \|\| num < MIN_PRIORITY \|\| num > MAX_PRIORITY) {\n return undefined;\n }\n\n return num;\n}\n\n/\n Get the color function for a priority value.\n \n - P0 (critical): red\n * - P1 (high): yellow\n * - P2-P4: no color (identity function)\n \n @param priority - The priority number (0-4)\n * @param colors - The colors object from createColors()\n * @returns A function that applies the appropriate color\n /\nexport function getPriorityColor(\n priority: number,\n colors: ReturnType<typeof createColors>,\n): (s: string) => string {\n switch (priority) {\n case 0:\n return colors.error;\n case 1:\n return colors.warn;\n default:\n return (s) => s;\n }\n}\n","/\n Generic project path utilities for handling user-provided paths.\n \n This module provides reusable functions for resolving, validating, and\n * normalizing paths relative to a project root. It is designed to be\n * general-purpose and not tied to any specific use case (e.g., specs).\n \n Key features:\n * - Resolves absolute, relative, and subdirectory paths to project-relative paths\n * - Validates that paths stay within project boundaries\n * - Normalizes paths (removes ./, converts backslashes, etc.)\n * - Validates file existence\n /\n\nimport { resolve, relative, isAbsolute, normalize, sep } from 'node:path';\nimport { access, stat } from 'node:fs/promises';\n\n/\n Result of resolving a path relative to the project root.\n /\nexport interface ResolvedProjectPath {\n /* Path relative to project root (always uses forward slashes) /\n relativePath: string;\n /* Absolute path to the file /\n absolutePath: string;\n}\n\n/\n Error thrown when a path operation fails.\n * The message is user-friendly and can be displayed directly.\n /\nexport class ProjectPathError extends Error {\n constructor(\n message: string,\n public readonly code: 'OUTSIDE_PROJECT' \| 'NOT_FOUND' \| 'NOT_A_FILE',\n ) {\n super(message);\n this.name = 'ProjectPathError';\n }\n}\n\n/\n Converts a ProjectPathError to a user-friendly error message for CLI display.\n * Returns the error message if it's a ProjectPathError, otherwise re-throws.\n /\nexport function getPathErrorMessage(error: unknown): string {\n if (error instanceof ProjectPathError) {\n return error.message;\n }\n throw error;\n}\n\n/\n Normalizes a path by:\n * - Removing leading ./\n * - Converting backslashes to forward slashes (Windows compatibility)\n * - Removing redundant slashes\n * - Resolving . and .. components\n \n @param inputPath - The path to normalize\n * @returns Normalized path string\n /\nexport function normalizePath(inputPath: string): string {\n if (!inputPath) {\n return '';\n }\n\n // First, convert all backslashes to forward slashes (Windows compatibility)\n // This must happen BEFORE normalize() since backslashes aren't path separators on Linux\n let normalized = inputPath.replace(/\\\\/g, '/');\n\n // Use Node's normalize to handle . and .. components\n // (normalize on Linux won't touch forward slashes)\n normalized = normalize(normalized);\n\n // Ensure we still have forward slashes after normalize (in case of mixed separators)\n normalized = normalized.split(sep).join('/');\n\n // Remove leading ./\n while (normalized.startsWith('./')) {\n normalized = normalized.slice(2);\n }\n\n // Remove trailing slash (unless it's just \"/\")\n if (normalized.length > 1 && normalized.endsWith('/')) {\n normalized = normalized.slice(0, -1);\n }\n\n // Handle edge case where normalize returns '.'\n if (normalized === '.') {\n return '';\n }\n\n return normalized;\n}\n\n/\n Checks if an absolute path is within the project root.\n \n @param absolutePath - The absolute path to check\n * @param projectRoot - The project root directory\n * @returns true if the path is within or at the project root\n /\nexport function isPathWithinProject(absolutePath: string, projectRoot: string): boolean {\n // Normalize both paths for consistent comparison\n const normalizedPath = resolve(absolutePath);\n const normalizedRoot = resolve(projectRoot);\n\n // The path is within the project if it starts with the project root\n // We need to handle the case where the path IS the project root\n // or is a subdirectory of it\n if (normalizedPath === normalizedRoot) {\n return true;\n }\n\n // Check if path starts with root + separator\n // This prevents false positives like /project-backup matching /project\n return normalizedPath.startsWith(normalizedRoot + sep);\n}\n\n/\n Resolves any path (absolute, relative, or from subdirectory) to a project-relative path.\n \n Resolution rules:\n * 1. Absolute paths within project → convert to relative\n * 2. Absolute paths outside project → error\n * 3. Relative paths from subdirectory → resolve to project root\n * 4. Already project-relative → pass through with normalization\n * 5. Path escaping project (../../) → error\n \n @param inputPath - The path provided by the user (can be absolute or relative)\n * @param projectRoot - The project root directory (parent of .tbd/)\n * @param cwd - Current working directory (where command was run)\n * @returns Resolved paths object with both relative and absolute paths\n * @throws ProjectPathError if path is outside project\n /\nexport function resolveProjectPath(\n inputPath: string,\n projectRoot: string,\n cwd: string,\n): ResolvedProjectPath {\n // Normalize inputs\n const normalizedProjectRoot = resolve(projectRoot);\n const normalizedCwd = resolve(cwd);\n\n let absolutePath: string;\n\n if (isAbsolute(inputPath)) {\n // Input is already absolute\n absolutePath = resolve(inputPath);\n } else {\n // Input is relative - resolve from current working directory\n absolutePath = resolve(normalizedCwd, inputPath);\n }\n\n // Check if path is within project\n if (!isPathWithinProject(absolutePath, normalizedProjectRoot)) {\n throw new ProjectPathError(`Path is outside project root: ${inputPath}`, 'OUTSIDE_PROJECT');\n }\n\n // Calculate relative path from project root\n const relativePath = relative(normalizedProjectRoot, absolutePath);\n\n // Normalize the relative path (remove ./, convert separators, etc.)\n const normalizedRelative = normalizePath(relativePath);\n\n return {\n relativePath: normalizedRelative,\n absolutePath,\n };\n}\n\n/\n Validates that a file exists at the resolved path.\n \n @param resolvedPath - Path already resolved via resolveProjectPath\n * @returns true if file exists\n * @throws ProjectPathError if file does not exist or is not a file\n /\nexport async function validateFileExists(resolvedPath: ResolvedProjectPath): Promise<boolean> {\n try {\n await access(resolvedPath.absolutePath);\n } catch {\n throw new ProjectPathError(`File not found: ${resolvedPath.relativePath}`, 'NOT_FOUND');\n }\n\n // Also verify it's a file, not a directory\n try {\n const stats = await stat(resolvedPath.absolutePath);\n if (!stats.isFile()) {\n throw new ProjectPathError(`Path is not a file: ${resolvedPath.relativePath}`, 'NOT_A_FILE');\n }\n } catch (error) {\n if (error instanceof ProjectPathError) {\n throw error;\n }\n throw new ProjectPathError(`File not found: ${resolvedPath.relativePath}`, 'NOT_FOUND');\n }\n\n return true;\n}\n\n/\n Convenience function that resolves and validates a path in one call.\n \n @param inputPath - The path provided by the user\n * @param projectRoot - The project root directory\n * @param cwd - Current working directory\n * @returns Resolved and validated path\n * @throws ProjectPathError if path is outside project or file doesn't exist\n /\nexport async function resolveAndValidatePath(\n inputPath: string,\n projectRoot: string,\n cwd: string,\n): Promise<ResolvedProjectPath> {\n const resolved = resolveProjectPath(inputPath, projectRoot, cwd);\n await validateFileExists(resolved);\n return resolved;\n}\n","/\n `tbd create` - Create a new issue.\n \n See: tbd-design.md §4.4 Create\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, ValidationError, CLIError } from '../lib/errors.js';\nimport type { Issue, IssueKindType, PriorityType } from '../../lib/types.js';\nimport { generateInternalId, extractUlidFromInternalId } from '../../lib/ids.js';\nimport { readIssue, writeIssue } from '../../file/storage.js';\nimport {\n loadIdMapping,\n saveIdMapping,\n generateUniqueShortId,\n addIdMapping,\n resolveToInternalId,\n} from '../../file/id-mapping.js';\nimport { IssueKind } from '../../lib/schemas.js';\nimport { parsePriority } from '../../lib/priority.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { readConfig } from '../../file/config.js';\nimport { resolveAndValidatePath, getPathErrorMessage } from '../../lib/project-paths.js';\n\ninterface CreateOptions {\n fromFile?: string;\n type?: string;\n priority?: string;\n description?: string;\n file?: string;\n assignee?: string;\n due?: string;\n defer?: string;\n parent?: string;\n label?: string[];\n spec?: string;\n}\n\nclass CreateHandler extends BaseCommand {\n async run(title: string \| undefined, options: CreateOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Validate title is provided (unless --from-file)\n if (!title && !options.fromFile) {\n throw new ValidationError('Title is required. Use: tbd create \"Issue title\"');\n }\n\n // Parse and validate options\n const kind = this.parseKind(options.type ?? 'task');\n const priority = this.validatePriority(options.priority ?? '2');\n\n // Read description from file if specified\n let description = options.description;\n if (options.file) {\n try {\n description = await readFile(options.file, 'utf-8');\n } catch {\n throw new CLIError(`Failed to read description from file: ${options.file}`);\n }\n }\n\n // Validate and normalize spec path if provided\n let specPath: string \| undefined;\n if (options.spec) {\n try {\n const resolved = await resolveAndValidatePath(options.spec, tbdRoot, process.cwd());\n specPath = resolved.relativePath;\n } catch (error) {\n throw new ValidationError(getPathErrorMessage(error));\n }\n }\n\n if (\n this.checkDryRun('Would create issue', { title, kind, priority, spec: specPath, ...options })\n ) {\n return;\n }\n\n const timestamp = now();\n const id = generateInternalId();\n const ulid = extractUlidFromInternalId(id);\n\n let shortId: string;\n let prefix: string;\n let issue: Issue;\n await this.execute(async () => {\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Read config for display prefix\n const config = await readConfig(tbdRoot);\n prefix = config.display.id_prefix;\n\n // Load mapping, generate unique short ID, and save\n const mapping = await loadIdMapping(dataSyncDir);\n shortId = generateUniqueShortId(mapping);\n addIdMapping(mapping, ulid, shortId);\n\n // Resolve parent ID if provided (convert display ID to internal ID)\n let parentId: string \| undefined;\n if (options.parent) {\n try {\n parentId = resolveToInternalId(options.parent, mapping);\n } catch {\n throw new ValidationError(`Invalid parent ID: ${options.parent}`);\n }\n }\n\n // Inherit spec_path from parent if not explicitly provided\n if (!specPath && parentId) {\n const parentIssue = await readIssue(dataSyncDir, parentId);\n if (parentIssue.spec_path) {\n specPath = parentIssue.spec_path;\n }\n }\n\n issue = {\n type: 'is',\n id,\n version: 1,\n title: title!,\n kind,\n status: 'open',\n priority,\n labels: options.label ?? [],\n dependencies: [],\n created_at: timestamp,\n updated_at: timestamp,\n description: description ?? undefined,\n assignee: options.assignee ?? undefined,\n due_date: options.due ?? undefined,\n deferred_until: options.defer ?? undefined,\n parent_id: parentId,\n spec_path: specPath,\n };\n\n // Write both the issue and the mapping\n await writeIssue(dataSyncDir, issue);\n await saveIdMapping(dataSyncDir, mapping);\n\n // When creating with a parent, append child to parent's child_order_hints\n if (parentId) {\n try {\n const parentIssue = await readIssue(dataSyncDir, parentId);\n const hints = parentIssue.child_order_hints ?? [];\n\n // Only append if not already in hints (shouldn't happen for new issue, but safe)\n if (!hints.includes(id)) {\n parentIssue.child_order_hints = [...hints, id];\n parentIssue.version += 1;\n parentIssue.updated_at = timestamp;\n await writeIssue(dataSyncDir, parentIssue);\n }\n } catch {\n // Parent not found or other error - skip order hint update\n }\n }\n }, 'Failed to create issue');\n\n // Output with display ID (prefix + short ID)\n const displayId = `${prefix!}-${shortId!}`;\n this.output.data({ id: displayId, internalId: id, title }, () => {\n this.output.success(`Created ${displayId}: ${title}`);\n });\n }\n\n private parseKind(value: string): IssueKindType {\n const result = IssueKind.safeParse(value);\n if (!result.success) {\n throw new ValidationError(`Invalid type: ${value}. Must be: bug, feature, task, epic, chore`);\n }\n return result.data;\n }\n\n private validatePriority(value: string): PriorityType {\n // Use shared parsePriority which accepts both \"P1\" and \"1\" formats\n const num = parsePriority(value);\n if (num === undefined) {\n throw new ValidationError(`Invalid priority: ${value}. Use P0-P4 or 0-4.`);\n }\n return num;\n }\n}\n\nexport const createCommand = new Command('create')\n .description('Create a new issue')\n .argument('[title]', 'Issue title')\n .option('--from-file <path>', 'Create from YAML+Markdown file')\n .option('-t, --type <type>', 'Issue type: bug, feature, task, epic, chore', 'task')\n .option('-p, --priority <0-4>', 'Priority (0=critical, 4=lowest)', '2')\n .option('-d, --description <text>', 'Description')\n .option('-f, --file <path>', 'Read description from file')\n .option('--assignee <name>', 'Assignee')\n .option('--due <date>', 'Due date (ISO8601)')\n .option('--defer <date>', 'Defer until date (ISO8601)')\n .option('--parent <id>', 'Parent issue ID')\n .option('--spec <path>', 'Link to spec document (relative path)')\n .option('-l, --label <label>', 'Add label (repeatable)', (val, prev: string[] = []) => [\n ...prev,\n val,\n ])\n .action(async (title, options, command) => {\n const handler = new CreateHandler(command);\n await handler.run(title, options);\n });\n","/\n Utility for parsing limit options in CLI commands.\n /\n\n/\n Parse a limit option and apply it to an array.\n \n @param items - Array to limit\n * @param limitOption - String limit option from CLI (may be undefined)\n * @returns Limited array (or original if no valid limit)\n /\nexport function applyLimit<T>(items: T[], limitOption: string \| undefined): T[] {\n if (!limitOption) {\n return items;\n }\n const limit = parseInt(limitOption, 10);\n if (isNaN(limit) \|\| limit <= 0) {\n return items;\n }\n return items.slice(0, limit);\n}\n","/\n Shared data context for tbd commands.\n \n Provides a single point to load common data needed by most commands:\n * - dataSyncDir: the path to the data sync directory\n * - mapping: the ID mapping (ULID to short ID)\n * - config: the project configuration\n * - prefix: the display prefix (from config.display.id_prefix)\n \n This eliminates the repetitive pattern of loading these individually in each command.\n \n For unified CLI + data context with helper methods, use FullCommandContext and\n * loadFullContext() which adds displayId() and other conveniences.\n /\n\nimport type { Command } from 'commander';\nimport type { IdMapping } from '../../file/id-mapping.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\nimport type { Config } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport type { CommandContext } from './context.js';\nimport { getCommandContext } from './context.js';\nimport { requireInit, NotFoundError } from './errors.js';\n\n/\n Data context containing commonly needed data for tbd commands.\n /\nexport interface TbdDataContext {\n /* Path to the data sync directory /\n dataSyncDir: string;\n /* ID mapping (ULID to short ID and vice versa) /\n mapping: IdMapping;\n /* Project configuration /\n config: Config;\n /* Display prefix from config (convenience accessor) /\n prefix: string;\n}\n\n/\n Full command context combining CLI options with data context.\n * Provides unified access to all command needs with helper methods.\n /\nexport interface FullCommandContext extends TbdDataContext {\n /* CLI options (dryRun, verbose, json, debug, etc.) /\n cli: CommandContext;\n /\n Format an internal issue ID for display.\n * Automatically respects debug mode to show full internal ID.\n /\n displayId(internalId: string): string;\n /\n Resolve user input ID to internal ID.\n * @throws NotFoundError if the ID cannot be resolved\n /\n resolveId(inputId: string): string;\n}\n\n/\n Load all common data context needed by tbd commands.\n \n This loads:\n * - dataSyncDir from resolveDataSyncDir()\n * - mapping from loadIdMapping()\n * - config from readConfig()\n * - prefix from config.display.id_prefix\n \n Call this once at the start of a command handler instead of\n * loading each piece separately.\n \n @param tbdRoot - The tbd repository root directory (from requireInit or findTbdRoot)\n * @throws Error if any of the resources fail to load\n /\nexport async function loadDataContext(tbdRoot: string): Promise<TbdDataContext> {\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n const [mapping, config] = await Promise.all([loadIdMapping(dataSyncDir), readConfig(tbdRoot)]);\n\n return {\n dataSyncDir,\n mapping,\n config,\n prefix: config.display.id_prefix,\n };\n}\n\n/\n Load unified command context with CLI options, data, and helper methods.\n \n This is the recommended way to initialize command context. It:\n * 1. Checks that tbd is initialized (calls requireInit)\n * 2. Loads data context (dataSyncDir, mapping, config, prefix)\n * 3. Extracts CLI context from Commander\n * 4. Provides helper methods like displayId() and resolveId()\n \n Usage:\n * ```ts\n * class MyHandler extends BaseCommand {\n * async run(id: string): Promise<void> {\n * const ctx = await loadFullContext(this.command);\n * const internalId = ctx.resolveId(id);\n * const issue = await readIssue(ctx.dataSyncDir, internalId);\n * console.log(ctx.displayId(issue.id));\n * }\n * }\n * ```\n \n @param command - The Commander command instance\n * @throws Error if tbd is not initialized or resources fail to load\n /\nexport async function loadFullContext(command: Command): Promise<FullCommandContext> {\n const tbdRoot = await requireInit();\n\n const cli = getCommandContext(command);\n const dataCtx = await loadDataContext(tbdRoot);\n\n return {\n ...dataCtx,\n cli,\n displayId(internalId: string): string {\n return cli.debug\n ? formatDebugId(internalId, dataCtx.mapping, dataCtx.prefix)\n : formatDisplayId(internalId, dataCtx.mapping, dataCtx.prefix);\n },\n resolveId(inputId: string): string {\n try {\n return resolveToInternalId(inputId, dataCtx.mapping);\n } catch {\n throw new NotFoundError('Issue', inputId);\n }\n },\n };\n}\n","/\n Comparison chain utilities for complex multi-field sorting.\n \n Inspired by Google Guava's ComparisonChain, this provides a fluent API\n * for building comparators with multiple sort keys, null handling, and\n * custom orderings.\n \n Example:\n \n items.sort(comparisonChain<Item>()\n * .compare(item => item.title, ordering.nullsLast)\n * .compare(item => item.url)\n * .result());\n /\n\nexport type Selector<T, K> = (item: T) => K;\nexport type Comparator<T> = (a: T, b: T) => number;\n\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nconst defaultCompare: Comparator<any> = (a, b) => {\n if (typeof a === 'string' && typeof b === 'string') {\n return a.localeCompare(b);\n }\n if (a < b) return -1;\n if (a > b) return 1;\n return 0;\n};\n\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nconst nullLastCompare: Comparator<any> = (a, b) => {\n if (a == null) return b == null ? 0 : 1;\n if (b == null) return -1;\n return defaultCompare(a, b);\n};\n\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nconst nullFirstCompare: Comparator<any> = (a, b) => {\n if (a == null) return b == null ? 0 : -1;\n if (b == null) return 1;\n return defaultCompare(a, b);\n};\n\n/\n A Google Guava-style comparison chain to make complex sorting, such as secondary\n * sorts, significantly easier.\n \n For example:\n \n items.sort(comparisonChain<Item>()\n * .compare(item => item.title, ordering.nullsLast)\n * .compare(item => item.url)\n * .result());\n /\nexport const comparisonChain = <T>() => {\n let compare: Comparator<T> = () => 0;\n\n const chain: {\n compare: <K>(selector: Selector<T, K>, comparator?: Comparator<K>) => typeof chain;\n result: () => Comparator<T>;\n } = {\n compare: <K>(selector: Selector<T, K>, comparator: Comparator<K> = defaultCompare) => {\n const prevCompare = compare;\n compare = (a, b) => prevCompare(a, b) \|\| comparator(selector(a), selector(b));\n return chain;\n },\n result: () => compare,\n };\n\n return chain;\n};\n\n/\n Reverse a comparator's ordering.\n /\nexport const reverse =\n <T>(comparator: Comparator<T>) =>\n (a: T, b: T) =>\n comparator(b, a);\n\n/\n Create a comparator that sorts values in a manually specified order.\n * Values not in the order array are placed at the end.\n /\nconst manualOrderComparator = <T>(order: readonly T[]): Comparator<T> => {\n const orderMap = new Map(order.map((value, index) => [value, index]));\n\n return (a: T, b: T): number => {\n const indexA = orderMap.get(a);\n const indexB = orderMap.get(b);\n\n // Values not in the manually ordered array go at the end.\n if (indexA === undefined) return indexB === undefined ? 0 : 1;\n if (indexB === undefined) return -1;\n\n return indexA - indexB;\n };\n};\n\n/\n Common ordering strategies for use with comparisonChain.\n /\nexport const ordering = {\n nullsLast: nullLastCompare,\n nullsFirst: nullFirstCompare,\n default: defaultCompare,\n reversed: reverse(defaultCompare),\n manual: manualOrderComparator,\n};\n","/\n Status formatting utilities.\n \n Status values: open, in_progress, blocked, deferred, closed.\n /\n\nimport { ICONS, type createColors } from '../cli/lib/output.js';\nimport type { IssueStatusType } from './types.js';\n\n/\n Get the icon for a status value.\n \n - open: ○ (empty circle)\n * - in_progress: ◐ (half-filled circle)\n * - blocked: ● (filled circle)\n * - deferred: ○ (empty circle, same as open)\n * - closed: ✓ (checkmark)\n /\nexport function getStatusIcon(status: IssueStatusType): string {\n switch (status) {\n case 'open':\n return ICONS.OPEN;\n case 'in_progress':\n return ICONS.IN_PROGRESS;\n case 'blocked':\n return ICONS.BLOCKED;\n case 'deferred':\n return ICONS.DEFERRED;\n case 'closed':\n return ICONS.CLOSED;\n default:\n return '';\n }\n}\n\n/\n Format a status for display with icon prefix.\n * Format: \"icon status\" (e.g., \"○ open\", \"◐ in_progress\")\n \n @example formatStatus('open') → \"○ open\"\n * @example formatStatus('blocked') → \"● blocked\"\n /\nexport function formatStatus(status: IssueStatusType): string {\n const icon = getStatusIcon(status);\n return `${icon} ${status}`;\n}\n\n/\n Get the color function for a status value.\n \n - open: blue (info)\n * - in_progress: green (success)\n * - blocked: red (error)\n * - deferred: dim\n * - closed: dim\n \n @param status - The status value\n * @param colors - The colors object from createColors()\n * @returns A function that applies the appropriate color\n /\nexport function getStatusColor(\n status: IssueStatusType,\n colors: ReturnType<typeof createColors>,\n): (s: string) => string {\n switch (status) {\n case 'open':\n return colors.info;\n case 'in_progress':\n return colors.success;\n case 'blocked':\n return colors.error;\n case 'deferred':\n return colors.dim;\n case 'closed':\n return colors.dim;\n default:\n return (s) => s;\n }\n}\n","/\n Text truncation utilities for CLI output.\n \n Provides consistent truncation with Unicode ellipsis character.\n /\n\n/\n Unicode ellipsis character (U+2026). Use this instead of '...'.\n /\nexport const ELLIPSIS = '…';\n\n/\n Options for truncate function.\n /\nexport interface TruncateOptions {\n /* If true, truncate at last word boundary before maxLength. /\n wordBoundary?: boolean;\n}\n\n/\n Truncate text to maxLength, appending ellipsis if truncated.\n \n @param text - Text to truncate\n * @param maxLength - Maximum length including ellipsis\n * @param options - Truncation options\n * @returns Truncated text with ellipsis, or original if short enough\n /\nexport function truncate(text: string, maxLength: number, options?: TruncateOptions): string {\n if (maxLength <= 0) {\n return '';\n }\n\n if (text.length <= maxLength) {\n return text;\n }\n\n if (maxLength === 1) {\n return ELLIPSIS;\n }\n\n const truncatedLength = maxLength - 1; // Reserve space for ellipsis\n\n if (options?.wordBoundary) {\n // Find last space within the truncation limit\n const lastSpace = text.lastIndexOf(' ', truncatedLength);\n if (lastSpace > 0) {\n return text.slice(0, lastSpace) + ELLIPSIS;\n }\n }\n\n // Character-level truncation\n return text.slice(0, truncatedLength) + ELLIPSIS;\n}\n\n/\n Truncate text from the middle, preserving start and end.\n * Useful for paths and IDs where both prefix and suffix are meaningful.\n \n @param text - Text to truncate\n * @param maxLength - Maximum length including ellipsis\n * @returns Truncated text with ellipsis in middle, or original if short enough\n /\nexport function truncateMiddle(text: string, maxLength: number): string {\n if (maxLength <= 0) {\n return '';\n }\n\n if (text.length <= maxLength) {\n return text;\n }\n\n if (maxLength === 1) {\n return ELLIPSIS;\n }\n\n if (maxLength === 2) {\n // Only room for one char + ellipsis\n return text[0] + ELLIPSIS;\n }\n\n // Calculate how many characters to keep on each side\n // Subtract 1 for the ellipsis\n const availableChars = maxLength - 1;\n const endLength = Math.floor(availableChars / 2);\n const startLength = availableChars - endLength;\n\n const start = text.slice(0, startLength);\n const end = text.slice(text.length - endLength);\n\n return start + ELLIPSIS + end;\n}\n","/\n Issue formatting utilities for consistent CLI output.\n \n Provides standardized formatting for issue display across all commands.\n /\n\nimport { formatPriority, getPriorityColor } from '../../lib/priority.js';\nimport { getStatusIcon, getStatusColor } from '../../lib/status.js';\nimport { truncate, ELLIPSIS } from '../../lib/truncate.js';\nimport type { createColors } from './output.js';\nimport type { IssueKindType, IssueStatusType } from '../../lib/types.js';\n\n/\n Column width constants for issue tables.\n /\nexport const ISSUE_COLUMNS = {\n ID: 12,\n PRIORITY: 5,\n STATUS: 16,\n ASSIGNEE: 10,\n} as const;\n\n/\n Issue data structure for formatting.\n /\nexport interface IssueForDisplay {\n id: string;\n priority: number;\n status: IssueStatusType;\n kind: IssueKindType;\n title: string;\n description?: string;\n labels?: string[];\n assignee?: string;\n}\n\n/\n Format a kind in brackets.\n \n @example formatKind('bug') → \"[bug]\"\n * @example formatKind('feature') → \"[feature]\"\n /\nexport function formatKind(kind: IssueKindType): string {\n return `[${kind}]`;\n}\n\n/\n Format a standard issue line for table display.\n \n Format: {ID} {PRI} {STATUS} [kind] {TITLE}\n \n @example \"bd-a1b2 P0 ● blocked [bug] Fix authentication timeout\"\n /\nexport function formatIssueLine(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const idCol = colors.id(issue.id.padEnd(ISSUE_COLUMNS.ID));\n const priCol = getPriorityColor(\n issue.priority,\n colors,\n )(formatPriority(issue.priority).padEnd(ISSUE_COLUMNS.PRIORITY));\n const statusText = `${getStatusIcon(issue.status)} ${issue.status}`;\n const statusCol = getStatusColor(issue.status, colors)(statusText.padEnd(ISSUE_COLUMNS.STATUS));\n const kindPrefix = colors.dim(formatKind(issue.kind));\n\n return `${idCol}${priCol}${statusCol}${kindPrefix} ${issue.title}`;\n}\n\n/\n Format an extended issue line with assignee column.\n \n Format: {ID} {PRI} {STATUS} {ASSIGNEE} [kind] {TITLE}\n /\nexport function formatIssueLineExtended(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const idCol = colors.id(issue.id.padEnd(ISSUE_COLUMNS.ID));\n const priCol = getPriorityColor(\n issue.priority,\n colors,\n )(formatPriority(issue.priority).padEnd(ISSUE_COLUMNS.PRIORITY));\n const statusText = `${getStatusIcon(issue.status)} ${issue.status}`;\n const statusCol = getStatusColor(issue.status, colors)(statusText.padEnd(ISSUE_COLUMNS.STATUS));\n const assigneeText = issue.assignee ? `@${issue.assignee}` : '-';\n const assigneeCol = assigneeText.padEnd(ISSUE_COLUMNS.ASSIGNEE);\n const kindPrefix = colors.dim(formatKind(issue.kind));\n\n return `${idCol}${priCol}${statusCol}${assigneeCol}${kindPrefix} ${issue.title}`;\n}\n\n/\n Format an issue line with labels.\n \n Format: {ID} {PRI} {STATUS} [kind] {TITLE} [labels]\n /\nexport function formatIssueWithLabels(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const baseLine = formatIssueLine(issue, colors);\n\n if (!issue.labels \|\| issue.labels.length === 0) {\n return baseLine;\n }\n\n const labelsText = colors.label(`[${issue.labels.join(', ')}]`);\n return `${baseLine} ${labelsText}`;\n}\n\n/\n Format a compact issue reference.\n \n Format: {ID} {STATUS_ICON} {TITLE}\n * (No kind shown)\n \n @example \"bd-a1b2 ● Fix authentication timeout\"\n /\nexport function formatIssueCompact(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const icon = getStatusIcon(issue.status);\n return `${colors.id(issue.id)} ${icon} ${issue.title}`;\n}\n\n/\n Format an inline issue mention.\n \n Format: {ID} ({TITLE})\n * (No kind shown)\n \n @example \"bd-a1b2 (Fix authentication timeout)\"\n /\nexport function formatIssueInline(issue: IssueForDisplay): string {\n return `${issue.id} (${issue.title})`;\n}\n\n/\n Format the table header row for issue listings.\n /\nexport function formatIssueHeader(colors: ReturnType<typeof createColors>): string {\n const idHeader = 'ID'.padEnd(ISSUE_COLUMNS.ID);\n const priHeader = 'PRI'.padEnd(ISSUE_COLUMNS.PRIORITY);\n const statusHeader = 'STATUS'.padEnd(ISSUE_COLUMNS.STATUS);\n const titleHeader = 'TITLE';\n\n return colors.dim(`${idHeader}${priHeader}${statusHeader}${titleHeader}`);\n}\n\n/\n Format the extended table header row with assignee column.\n /\nexport function formatIssueHeaderExtended(colors: ReturnType<typeof createColors>): string {\n const idHeader = 'ID'.padEnd(ISSUE_COLUMNS.ID);\n const priHeader = 'PRI'.padEnd(ISSUE_COLUMNS.PRIORITY);\n const statusHeader = 'STATUS'.padEnd(ISSUE_COLUMNS.STATUS);\n const assigneeHeader = 'ASSIGNEE'.padEnd(ISSUE_COLUMNS.ASSIGNEE);\n const titleHeader = 'TITLE';\n\n return colors.dim(`${idHeader}${priHeader}${statusHeader}${assigneeHeader}${titleHeader}`);\n}\n\n/\n Format an issue with long format (includes description on second line).\n \n Description is indented 6 spaces, dim color, max 2 lines.\n /\nexport function formatIssueLong(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n maxWidth = 80,\n): string {\n const firstLine = formatIssueLine(issue, colors);\n\n if (!issue.description) {\n return firstLine;\n }\n\n const descLines = wrapDescription(issue.description, 6, 2, maxWidth);\n if (!descLines) {\n return firstLine;\n }\n\n return `${firstLine}\\n${colors.dim(descLines)}`;\n}\n\n/\n Word-wrap description text with indentation.\n \n @param text - The text to wrap\n * @param indent - Number of spaces to indent each line\n * @param maxLines - Maximum number of lines (truncates with ellipsis)\n * @param maxWidth - Maximum width per line (including indent)\n /\nexport function wrapDescription(\n text: string,\n indent: number,\n maxLines: number,\n maxWidth: number,\n): string {\n if (!text) return '';\n\n const indentStr = ' '.repeat(indent);\n const contentWidth = maxWidth - indent;\n\n // Split into words and wrap\n const words = text.split(/\\s+/);\n const lines: string[] = [];\n let currentLine = '';\n\n for (const word of words) {\n if (!currentLine) {\n currentLine = word;\n } else if (currentLine.length + 1 + word.length <= contentWidth) {\n currentLine += ' ' + word;\n } else {\n lines.push(currentLine);\n currentLine = word;\n\n // Stop if we've hit max lines\n if (lines.length >= maxLines) {\n break;\n }\n }\n }\n\n // Add remaining content\n if (currentLine && lines.length < maxLines) {\n lines.push(currentLine);\n }\n\n // Truncate last line if we have more content\n if (lines.length === maxLines && currentLine && !lines.includes(currentLine)) {\n const lastLine = lines[maxLines - 1];\n if (lastLine) {\n lines[maxLines - 1] = truncate(lastLine, contentWidth - 1) + ELLIPSIS;\n }\n }\n\n return lines.map((line) => indentStr + line).join('\\n');\n}\n\n/\n Format a spec path with the filename portion bolded.\n \n e.g. \"docs/project/specs/active/plan-2026-01-27-my-feature.md\"\n * → \"docs/project/specs/active/\" + bold(\"plan-2026-01-27-my-feature.md\")\n /\nexport function formatSpecName(specPath: string, colors: ReturnType<typeof createColors>): string {\n const lastSlash = specPath.lastIndexOf('/');\n if (lastSlash === -1) {\n return colors.bold(specPath);\n }\n const dir = specPath.slice(0, lastSlash + 1);\n const filename = specPath.slice(lastSlash + 1);\n return dir + colors.bold(filename);\n}\n\n/\n Format a spec group header for --specs output.\n \n Renders \"Spec: path/to/bold-filename.md (count)\".\n /\nexport function formatSpecGroupHeader(\n specPath: string,\n count: number,\n colors: ReturnType<typeof createColors>,\n): string {\n return 'Spec: ' + formatSpecName(specPath, colors) + colors.dim(` (${count})`);\n}\n\n/\n Format the \"No spec\" group header for beads without a linked spec.\n /\nexport function formatNoSpecGroupHeader(\n count: number,\n colors: ReturnType<typeof createColors>,\n): string {\n return colors.bold('(No spec)') + colors.dim(` (${count})`);\n}\n","/\n Tree view utilities for displaying issues with parent-child relationships.\n \n Used by `tbd list --pretty` to show hierarchical issue structure.\n /\n\nimport type { createColors } from './output.js';\nimport { formatPriority, getPriorityColor } from '../../lib/priority.js';\nimport { getStatusIcon, getStatusColor } from '../../lib/status.js';\nimport {\n formatKind,\n wrapDescription,\n ISSUE_COLUMNS,\n type IssueForDisplay,\n} from './issue-format.js';\nimport { comparisonChain, ordering } from '../../lib/comparison-chain.js';\nimport type { InternalIssueId } from '../../lib/ids.js';\n\n/\n Options for tree rendering.\n /\nexport interface TreeRenderOptions {\n /* Show descriptions (--long mode) /\n long?: boolean;\n /* Terminal width for description wrapping /\n maxWidth?: number;\n}\n\n/\n Tree node representing an issue with its children.\n /\nexport interface TreeNode {\n issue: IssueForDisplay;\n children: TreeNode[];\n}\n\n/\n Unicode box-drawing characters for tree display.\n /\nconst TREE_CHARS = {\n /* Middle child connector: ├── /\n BRANCH: '├── ',\n /* Last child connector: └── /\n LAST: '└── ',\n /* Vertical line continuation: │ /\n VERTICAL: '│ ',\n /* Empty space for alignment: /\n SPACE: ' ',\n} as const;\n\n/\n Issue input for tree building, with optional parent and ordering hints.\n /\nexport interface IssueForTree extends IssueForDisplay {\n parentId?: string;\n /* Internal ID for matching against order hints (optional, defaults to id) /\n internalId?: InternalIssueId;\n /* Ordered list of child internal IDs for preferred display order /\n child_order_hints?: InternalIssueId[];\n}\n\n/\n Get the internal ID for an issue (used for matching against order hints).\n * Falls back to display ID if internalId is not set.\n /\nfunction getInternalId(issue: IssueForTree): string {\n return issue.internalId ?? issue.id;\n}\n\n/\n Sort children using order hints from the parent.\n \n Children in hints appear first, in hints order.\n * Children not in hints appear after, sorted by ID for determinism.\n * Uses internalId for matching against hints (which contain internal IDs).\n /\nfunction sortChildren(children: TreeNode[], hints: InternalIssueId[] \| undefined): void {\n if (!hints \|\| hints.length === 0) {\n // No hints - sort by ID for determinism\n children.sort(\n comparisonChain<TreeNode>()\n .compare((n) => n.issue.id)\n .result(),\n );\n return;\n }\n\n // Sort using manual ordering: items in hints first, then by ID\n // Use internalId for matching since hints contain internal IDs\n // Cast to string[] since ordering.manual works with any strings\n children.sort(\n comparisonChain<TreeNode>()\n .compare((n) => getInternalId(n.issue as IssueForTree), ordering.manual(hints as string[]))\n .compare((n) => n.issue.id) // Secondary sort for items not in hints\n .result(),\n );\n}\n\n/\n Build a tree structure from a flat list of issues.\n \n Groups children under their parents based on parent_id.\n * Issues without a parent (or whose parent is not in the list) become root nodes.\n * Children are sorted according to parent's child_order_hints if available.\n \n @param issues - Flat list of issues with optional parent_id and child_order_hints\n * @returns Array of root tree nodes with nested children\n /\nexport function buildIssueTree(issues: IssueForTree[]): TreeNode[] {\n // Create a map for quick lookup by ID\n const issueMap = new Map<string, TreeNode>();\n // Store order hints per parent (internal IDs for child ordering)\n const orderHintsMap = new Map<string, InternalIssueId[]>();\n const roots: TreeNode[] = [];\n\n // First pass: create nodes for all issues and collect order hints\n for (const issue of issues) {\n issueMap.set(issue.id, { issue, children: [] });\n if (issue.child_order_hints) {\n orderHintsMap.set(issue.id, issue.child_order_hints);\n }\n }\n\n // Second pass: build parent-child relationships\n for (const issue of issues) {\n const node = issueMap.get(issue.id)!;\n\n if (issue.parentId && issueMap.has(issue.parentId)) {\n // Has a parent that's in our list - add as child\n const parentNode = issueMap.get(issue.parentId)!;\n parentNode.children.push(node);\n } else {\n // No parent or parent not in list - this is a root\n roots.push(node);\n }\n }\n\n // Third pass: sort children using parent's order hints\n for (const node of issueMap.values()) {\n if (node.children.length > 0) {\n const hints = orderHintsMap.get(node.issue.id);\n sortChildren(node.children, hints);\n }\n }\n\n // Root nodes preserve their input order (list command already sorts by priority)\n\n return roots;\n}\n\n/\n Format a single issue line for tree view (no header, compact format).\n \n Format: {ID} {PRI} {STATUS} [kind] {TITLE}\n \n ID column is padded to ISSUE_COLUMNS.ID width for consistent alignment.\n /\nfunction formatTreeIssueLine(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const id = colors.id(issue.id.padEnd(ISSUE_COLUMNS.ID));\n const pri = getPriorityColor(issue.priority, colors)(formatPriority(issue.priority));\n const statusText = `${getStatusIcon(issue.status)} ${issue.status}`;\n const status = getStatusColor(issue.status, colors)(statusText);\n const kind = colors.dim(formatKind(issue.kind));\n\n return `${id} ${pri} ${status} ${kind} ${issue.title}`;\n}\n\n/\n Render a tree node and its children as formatted lines.\n \n @param node - The tree node to render\n * @param colors - Color functions for formatting\n * @param prefix - Current line prefix (for nested indentation)\n * @param options - Rendering options (long mode, max width)\n * @returns Array of formatted lines\n /\nfunction renderTreeNode(\n node: TreeNode,\n colors: ReturnType<typeof createColors>,\n prefix = '',\n options: TreeRenderOptions = {},\n): string[] {\n const lines: string[] = [];\n const { long = false, maxWidth = 80 } = options;\n\n // Render this node\n const issueLine = formatTreeIssueLine(node.issue, colors);\n lines.push(prefix + issueLine);\n\n // Render description if --long and description exists\n if (long && node.issue.description) {\n // Calculate indent: prefix length + 6 spaces for description alignment\n const descIndent = prefix.length + 6;\n const descWidth = maxWidth - descIndent;\n if (descWidth > 20) {\n const wrapped = wrapDescription(node.issue.description, 6, 2, descWidth + 6);\n if (wrapped) {\n // Add prefix to each description line\n const descLines = wrapped.split('\\n');\n for (const descLine of descLines) {\n lines.push(prefix + colors.dim(descLine));\n }\n }\n }\n }\n\n // Render children\n const childCount = node.children.length;\n node.children.forEach((child, index) => {\n const isLastChild = index === childCount - 1;\n\n // Determine the connector for this child\n const connector = isLastChild ? TREE_CHARS.LAST : TREE_CHARS.BRANCH;\n\n // Determine the prefix for continuation lines (descriptions, grandchildren)\n // If this child is not last, we need a vertical line; otherwise space\n const childPrefix = prefix + (isLastChild ? TREE_CHARS.SPACE : TREE_CHARS.VERTICAL);\n\n // Render child with childPrefix so it knows the correct indentation for descriptions\n const childLines = renderTreeNode(child, colors, childPrefix, options);\n\n // Process lines: first line gets connector, others keep childPrefix\n childLines.forEach((line, lineIndex) => {\n if (lineIndex === 0) {\n // Replace childPrefix with connector for the first line\n const lineWithoutPrefix = line.slice(childPrefix.length);\n lines.push(colors.dim(connector) + lineWithoutPrefix);\n } else {\n // Keep childPrefix for continuation lines (already included)\n lines.push(line);\n }\n });\n });\n\n return lines;\n}\n\n/\n Render a complete tree view of issues.\n \n @param roots - Array of root tree nodes\n * @param colors - Color functions for formatting\n * @param options - Rendering options (long mode, max width)\n * @returns Array of formatted lines (without header, count is separate)\n /\nexport function renderIssueTree(\n roots: TreeNode[],\n colors: ReturnType<typeof createColors>,\n options: TreeRenderOptions = {},\n): string[] {\n const lines: string[] = [];\n\n for (const root of roots) {\n const rootLines = renderTreeNode(root, colors, '', options);\n lines.push(...rootLines);\n }\n\n return lines;\n}\n\n/\n Count total issues in a tree (including all nested children).\n /\nexport function countTreeIssues(roots: TreeNode[]): number {\n let count = 0;\n\n function countNode(node: TreeNode): void {\n count++;\n for (const child of node.children) {\n countNode(child);\n }\n }\n\n for (const root of roots) {\n countNode(root);\n }\n\n return count;\n}\n","/\n Spec path matching utilities.\n \n Provides gradual path matching for linking beads to spec documents.\n * Supports matching by filename, partial path suffix, or full path.\n \n See: plan-2026-01-26-spec-linking.md §Gradual Path Matching Algorithm\n /\n\nimport { basename } from 'node:path';\n\n/\n Check if a stored spec path matches a query path using gradual matching.\n \n Matching rules (in order of precedence):\n * 1. Exact match after normalization\n * 2. Suffix match: stored path ends with query path at a path separator\n * 3. Filename match: query matches the filename portion of stored path\n \n @param storedPath - The spec_path stored in the issue (e.g., \"docs/specs/plan-feature.md\")\n * @param queryPath - The path to match against (e.g., \"plan-feature.md\" or \"specs/plan-feature.md\")\n * @returns true if the paths match\n \n @example\n * // All these queries match stored path \"docs/project/specs/active/plan-2026-01-26-feature.md\":\n * matchesSpecPath(stored, \"plan-2026-01-26-feature.md\") // filename match\n * matchesSpecPath(stored, \"feature.md\") // partial filename - NO MATCH (too ambiguous)\n * matchesSpecPath(stored, \"active/plan-2026-01-26-feature.md\") // suffix match\n * matchesSpecPath(stored, \"docs/project/specs/active/plan-2026-01-26-feature.md\") // exact match\n /\nexport function matchesSpecPath(storedPath: string, queryPath: string): boolean {\n // Handle empty/null cases\n if (!storedPath \|\| !queryPath) {\n return false;\n }\n\n // Normalize paths: remove leading ./ and trailing /\n const normalizedStored = normalizePath(storedPath);\n const normalizedQuery = normalizePath(queryPath);\n\n // Empty after normalization\n if (!normalizedStored \|\| !normalizedQuery) {\n return false;\n }\n\n // 1. Exact match\n if (normalizedStored === normalizedQuery) {\n return true;\n }\n\n // 2. Suffix match: stored path ends with /query\n // This handles partial path matches like \"active/plan.md\" matching \"docs/specs/active/plan.md\"\n if (normalizedStored.endsWith('/' + normalizedQuery)) {\n return true;\n }\n\n // 3. Filename match: query is just a filename that matches stored's filename\n const storedFilename = basename(normalizedStored);\n const queryFilename = basename(normalizedQuery);\n\n // Only do filename match if query has no directory components\n // (otherwise it would have matched in suffix check above)\n if (!normalizedQuery.includes('/') && storedFilename === normalizedQuery) {\n return true;\n }\n\n // Also match if both have same filename and query is just a filename\n if (!normalizedQuery.includes('/') && storedFilename === queryFilename) {\n return true;\n }\n\n return false;\n}\n\n/\n Normalize a path for comparison.\n * - Removes leading ./\n * - Removes trailing /\n * - Collapses multiple slashes\n /\nfunction normalizePath(path: string): string {\n return path\n .replace(/^\\.\\//, '') // Remove leading ./\n .replace(/\\/+$/, '') // Remove trailing /\n .replace(/\\/+/g, '/'); // Collapse multiple slashes\n}\n","/\n `tbd list` - List issues.\n \n See: tbd-design.md §4.4 List\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { requireInit, CLIError } from '../lib/errors.js';\nimport { loadDataContext, type TbdDataContext } from '../lib/data-context.js';\nimport type { Issue, IssueStatusType, IssueKindType } from '../../lib/types.js';\nimport { listIssues } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId, extractUlidFromInternalId } from '../../lib/ids.js';\nimport type { IdMapping } from '../../file/id-mapping.js';\nimport { resolveToInternalId } from '../../file/id-mapping.js';\nimport { naturalCompare } from '../../lib/sort.js';\nimport { comparisonChain, ordering } from '../../lib/comparison-chain.js';\nimport {\n formatIssueLine,\n formatIssueLong,\n formatIssueHeader,\n formatSpecGroupHeader,\n formatNoSpecGroupHeader,\n type IssueForDisplay,\n} from '../lib/issue-format.js';\nimport { parsePriority } from '../../lib/priority.js';\nimport { buildIssueTree, renderIssueTree } from '../lib/tree-view.js';\nimport { getTerminalWidth, type createColors } from '../lib/output.js';\nimport { matchesSpecPath } from '../../lib/spec-matching.js';\n\ninterface ListOptions {\n status?: IssueStatusType;\n all?: boolean;\n type?: IssueKindType;\n priority?: string;\n assignee?: string;\n label?: string[];\n parent?: string;\n spec?: string;\n deferred?: boolean;\n deferBefore?: string;\n sort?: string;\n limit?: string;\n count?: boolean;\n long?: boolean;\n pretty?: boolean;\n specs?: boolean;\n}\n\nclass ListHandler extends BaseCommand {\n async run(options: ListOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n let issues: Issue[];\n let dataCtx: TbdDataContext;\n\n try {\n // Load shared data context (dataSyncDir, mapping, config, prefix)\n dataCtx = await loadDataContext(tbdRoot);\n issues = await listIssues(dataCtx.dataSyncDir);\n } catch {\n throw new CLIError('Failed to read issues');\n }\n\n // Apply filters\n issues = this.filterIssues(issues, options, dataCtx.mapping);\n\n // Sort results (with secondary sort by short ID for stable ordering)\n issues = this.sortIssues(issues, options.sort ?? 'priority', dataCtx.mapping);\n\n // Apply limit\n issues = applyLimit(issues, options.limit);\n\n // Count-only mode for testing\n if (options.count) {\n this.output.data({ count: issues.length }, () => {\n console.log(issues.length);\n });\n return;\n }\n\n const showDebug = this.ctx.debug;\n const { mapping, prefix } = dataCtx;\n\n // Format output - use short display IDs instead of internal ULIDs\n const displayIssues = issues.map((i) => ({\n id: showDebug ? formatDebugId(i.id, mapping, prefix) : formatDisplayId(i.id, mapping, prefix),\n internalId: i.id,\n parentId: i.parent_id\n ? showDebug\n ? formatDebugId(i.parent_id, mapping, prefix)\n : formatDisplayId(i.parent_id, mapping, prefix)\n : undefined,\n priority: i.priority,\n status: i.status,\n kind: i.kind,\n title: i.title,\n description: i.description ?? undefined,\n assignee: i.assignee ?? undefined,\n labels: i.labels,\n spec_path: i.spec_path ?? undefined,\n // Use internal IDs for order hints (buildIssueTree compares against internal IDs)\n child_order_hints: i.child_order_hints ?? undefined,\n }));\n\n this.output.data(displayIssues, () => {\n if (issues.length === 0) {\n console.log('No issues found');\n return;\n }\n\n const colors = this.output.getColors();\n\n if (options.specs) {\n this.renderGroupedBySpec(displayIssues, options, colors);\n } else {\n this.renderFlat(displayIssues, options, colors);\n }\n\n console.log('');\n console.log(colors.dim(`${issues.length} issue(s)`));\n });\n }\n\n private renderFlat(\n displayIssues: (IssueForDisplay & { parentId?: string; spec_path?: string })[],\n options: ListOptions,\n colors: ReturnType<typeof createColors>,\n ): void {\n if (options.pretty) {\n const tree = buildIssueTree(displayIssues);\n const lines = renderIssueTree(tree, colors, {\n long: options.long,\n maxWidth: getTerminalWidth(),\n });\n for (const line of lines) {\n console.log(line);\n }\n } else {\n console.log(formatIssueHeader(colors));\n for (const issue of displayIssues) {\n if (options.long) {\n console.log(formatIssueLong(issue, colors));\n } else {\n console.log(formatIssueLine(issue, colors));\n }\n }\n }\n }\n\n private renderGroupedBySpec(\n displayIssues: (IssueForDisplay & { parentId?: string; spec_path?: string })[],\n options: ListOptions,\n colors: ReturnType<typeof createColors>,\n ): void {\n // Group issues by spec_path\n const specGroups = new Map<string, typeof displayIssues>();\n const noSpecIssues: typeof displayIssues = [];\n\n for (const issue of displayIssues) {\n if (issue.spec_path) {\n const group = specGroups.get(issue.spec_path);\n if (group) {\n group.push(issue);\n } else {\n specGroups.set(issue.spec_path, [issue]);\n }\n } else {\n noSpecIssues.push(issue);\n }\n }\n\n // Render each spec group\n let first = true;\n for (const [specPath, groupIssues] of specGroups) {\n if (!first) {\n console.log('');\n }\n first = false;\n\n console.log(formatSpecGroupHeader(specPath, groupIssues.length, colors));\n console.log('');\n this.renderFlat(groupIssues, options, colors);\n }\n\n // Render \"No spec\" group at the end\n if (noSpecIssues.length > 0) {\n if (!first) {\n console.log('');\n }\n console.log(formatNoSpecGroupHeader(noSpecIssues.length, colors));\n console.log('');\n this.renderFlat(noSpecIssues, options, colors);\n }\n }\n\n private filterIssues(issues: Issue[], options: ListOptions, mapping: IdMapping): Issue[] {\n // Resolve parent filter to internal ID if provided\n let resolvedParentId: string \| undefined;\n if (options.parent) {\n try {\n resolvedParentId = resolveToInternalId(options.parent, mapping);\n } catch {\n // If parent ID cannot be resolved, no issues will match\n return [];\n }\n }\n\n return issues.filter((issue) => {\n // By default, exclude closed issues unless --all or --status closed\n if (!options.all && options.status !== 'closed' && issue.status === 'closed') {\n return false;\n }\n\n // Status filter\n if (options.status && issue.status !== options.status) {\n return false;\n }\n\n // Type filter\n if (options.type && issue.kind !== options.type) {\n return false;\n }\n\n // Priority filter - supports both numeric (1) and prefixed (P1) formats\n if (options.priority !== undefined) {\n const priority = parsePriority(options.priority);\n if (priority !== undefined && issue.priority !== priority) {\n return false;\n }\n }\n\n // Assignee filter\n if (options.assignee && issue.assignee !== options.assignee) {\n return false;\n }\n\n // Label filter (all must match)\n if (options.label && options.label.length > 0) {\n const hasAllLabels = options.label.every((l) => issue.labels.includes(l));\n if (!hasAllLabels) {\n return false;\n }\n }\n\n // Parent filter (compare resolved internal IDs)\n if (resolvedParentId && issue.parent_id !== resolvedParentId) {\n return false;\n }\n\n // Spec path filter (uses gradual matching)\n if (options.spec) {\n if (!issue.spec_path \|\| !matchesSpecPath(issue.spec_path, options.spec)) {\n return false;\n }\n }\n\n // Deferred filter\n if (options.deferred && issue.status !== 'deferred') {\n return false;\n }\n\n return true;\n });\n }\n\n private sortIssues(issues: Issue[], sortField: string, mapping: IdMapping): Issue[] {\n // Helper to get short ID for secondary sort\n const getShortId = (issue: Issue): string => {\n const ulid = extractUlidFromInternalId(issue.id);\n return mapping.ulidToShort.get(ulid) ?? ulid;\n };\n\n const primarySelector: (i: Issue) => number =\n sortField === 'created'\n ? (i) => new Date(i.created_at).getTime()\n : sortField === 'updated'\n ? (i) => new Date(i.updated_at).getTime()\n : (i) => i.priority;\n\n // For created/updated, reverse so newest comes first; for priority, ascending\n const primaryOrdering =\n sortField === 'created' \|\| sortField === 'updated' ? ordering.reversed : ordering.default;\n\n return [...issues].sort(\n comparisonChain<Issue>()\n .compare(primarySelector, primaryOrdering)\n .compare(getShortId, (a, b) => naturalCompare(a, b))\n .result(),\n );\n }\n}\n\nexport const listCommand = new Command('list')\n .description('List issues')\n .option('--status <status>', 'Filter: open, in_progress, blocked, deferred, closed')\n .option('--all', 'Include closed issues')\n .option('--type <type>', 'Filter: bug, feature, task, epic')\n .option('--priority <0-4>', 'Filter by priority')\n .option('--assignee <name>', 'Filter by assignee')\n .option('--label <label>', 'Filter by label (repeatable)', (val, prev: string[] = []) => [\n ...prev,\n val,\n ])\n .option('--parent <id>', 'List children of parent')\n .option(\n '--spec <path>',\n 'Filter by spec path (matches full path, partial path suffix, or filename)',\n )\n .option('--deferred', 'Show only deferred issues')\n .option('--defer-before <date>', 'Deferred before date')\n .option('--sort <field>', 'Sort by: priority, created, updated', 'priority')\n .option('--limit <n>', 'Limit results')\n .option('--count', 'Output only the count of matching issues')\n .option('--long', 'Show descriptions')\n .option('--pretty', 'Show tree view with parent-child relationships')\n .option('--specs', 'Group output by linked spec')\n .action(async (options, command) => {\n const handler = new ListHandler(command);\n await handler.run(options);\n });\n","/\n `tbd show` - Show issue details.\n \n See: tbd-design.md §4.4 Show\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { NotFoundError } from '../lib/errors.js';\nimport { loadFullContext } from '../lib/data-context.js';\nimport { readIssue } from '../../file/storage.js';\nimport { serializeIssue } from '../../file/parser.js';\nimport { formatPriority, getPriorityColor } from '../../lib/priority.js';\nimport { getStatusColor } from '../../lib/status.js';\nimport type { IssueStatusType } from '../../lib/types.js';\n\ninterface ShowOptions {\n showOrder?: boolean;\n}\n\nclass ShowHandler extends BaseCommand {\n async run(id: string, command: Command, options: ShowOptions): Promise<void> {\n // Load unified context with data and helpers\n const ctx = await loadFullContext(command);\n\n // Resolve input ID to internal ID using helper\n const internalId = ctx.resolveId(id);\n\n let issue;\n try {\n issue = await readIssue(ctx.dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Format display ID using helper (respects debug mode automatically)\n const displayId = ctx.displayId(issue.id);\n\n // Create display version with short display ID\n const displayIssue = {\n ...issue,\n displayId,\n };\n\n this.output.data(displayIssue, () => {\n const colors = this.output.getColors();\n\n // Output as YAML+Markdown format (same as storage format)\n const serialized = serializeIssue(issue);\n\n // Add some color highlighting for text output\n const lines = serialized.split('\\n');\n for (const line of lines) {\n if (line === '---') {\n console.log(colors.dim(line));\n } else if (line.startsWith('id:')) {\n console.log(`${colors.dim('id:')} ${colors.id(line.slice(4))}`);\n } else if (line.startsWith('status:')) {\n const status = line.slice(8).trim() as IssueStatusType;\n const statusColor = getStatusColor(status, colors);\n console.log(`${colors.dim('status:')} ${statusColor(status)}`);\n } else if (line.startsWith('priority:')) {\n const priority = parseInt(line.slice(10).trim(), 10);\n const priorityColor = getPriorityColor(priority, colors);\n console.log(`${colors.dim('priority:')} ${priorityColor(formatPriority(priority))}`);\n } else if (line.startsWith('title:')) {\n console.log(`${colors.dim('title:')} ${colors.bold(line.slice(7))}`);\n } else if (line.startsWith('spec_path:')) {\n console.log(`${colors.dim('spec_path:')} ${colors.id(line.slice(11))}`);\n } else if (line.startsWith('## Notes')) {\n console.log(colors.bold(line));\n } else if (line.startsWith(' - ')) {\n console.log(` - ${colors.label(line.slice(4))}`);\n } else {\n console.log(line);\n }\n }\n\n // Show child_order_hints if --show-order is specified\n if (options.showOrder) {\n console.log('');\n console.log(colors.dim('child_order_hints:'));\n if (issue.child_order_hints && issue.child_order_hints.length > 0) {\n for (const hintId of issue.child_order_hints) {\n const shortId = ctx.displayId(hintId);\n console.log(` - ${colors.id(shortId)}`);\n }\n } else {\n console.log(` ${colors.dim('(none)')}`);\n }\n }\n });\n }\n}\n\nexport const showCommand = new Command('show')\n .description('Show issue details')\n .argument('<id>', 'Issue ID')\n .option('--show-order', 'Display children ordering hints')\n .action(async (id, options, command) => {\n const handler = new ShowHandler(command);\n await handler.run(id, command, options);\n });\n","/\n `tbd update` - Update an issue.\n \n See: tbd-design.md §4.4 Update\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, ValidationError, CLIError } from '../lib/errors.js';\nimport { readIssue, writeIssue, listIssues } from '../../file/storage.js';\nimport { parseMarkdownWithFrontmatter } from '../../file/parser.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { IssueStatus, IssueKind } from '../../lib/schemas.js';\nimport { parsePriority } from '../../lib/priority.js';\nimport type { IssueStatusType, IssueKindType, PriorityType } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId, type IdMapping } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\nimport { resolveAndValidatePath, getPathErrorMessage } from '../../lib/project-paths.js';\n\ninterface UpdateOptions {\n fromFile?: string;\n title?: string;\n status?: string;\n type?: string;\n priority?: string;\n assignee?: string;\n description?: string;\n notes?: string;\n notesFile?: string;\n due?: string;\n defer?: string;\n addLabel?: string[];\n removeLabel?: string[];\n parent?: string;\n spec?: string;\n childOrder?: string;\n}\n\nclass UpdateHandler extends BaseCommand {\n async run(id: string, options: UpdateOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Parse and validate options\n const updates = await this.parseUpdates(options, mapping, tbdRoot);\n if (updates === null) return;\n\n if (this.checkDryRun('Would update issue', { id: internalId, ...updates })) {\n return;\n }\n\n // Capture old spec_path before applying updates (for propagation)\n const oldSpecPath = issue.spec_path;\n\n // Apply updates\n if (updates.title !== undefined) issue.title = updates.title;\n if (updates.status !== undefined) issue.status = updates.status;\n if (updates.kind !== undefined) issue.kind = updates.kind;\n if (updates.priority !== undefined) issue.priority = updates.priority;\n if (updates.assignee !== undefined) issue.assignee = updates.assignee;\n if (updates.description !== undefined) issue.description = updates.description;\n if (updates.notes !== undefined) issue.notes = updates.notes;\n if (updates.due_date !== undefined) issue.due_date = updates.due_date;\n if (updates.deferred_until !== undefined) issue.deferred_until = updates.deferred_until;\n if (updates.parent_id !== undefined) issue.parent_id = updates.parent_id;\n if (updates.spec_path !== undefined) issue.spec_path = updates.spec_path;\n if (updates.child_order_hints !== undefined)\n issue.child_order_hints = updates.child_order_hints;\n\n // Inherit spec_path from new parent when re-parenting without explicit --spec\n if (updates.parent_id && options.spec === undefined && !issue.spec_path) {\n try {\n const parentIssue = await readIssue(dataSyncDir, updates.parent_id);\n if (parentIssue.spec_path) {\n issue.spec_path = parentIssue.spec_path;\n }\n } catch {\n // Parent not found — skip inheritance\n }\n }\n\n // Handle full labels replacement (from --from-file)\n if (updates.labels !== undefined) {\n issue.labels = updates.labels;\n }\n\n // Handle label updates\n if (updates.addLabels && updates.addLabels.length > 0) {\n const labelsSet = new Set(issue.labels);\n for (const label of updates.addLabels) {\n labelsSet.add(label);\n }\n issue.labels = [...labelsSet];\n }\n if (updates.removeLabels && updates.removeLabels.length > 0) {\n const removeSet = new Set(updates.removeLabels);\n issue.labels = issue.labels.filter((l) => !removeSet.has(l));\n }\n\n // Update metadata\n issue.version += 1;\n issue.updated_at = now();\n\n // Save\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to update issue');\n\n // When setting a new parent, append child to parent's child_order_hints\n if (updates.parent_id) {\n try {\n const parentIssue = await readIssue(dataSyncDir, updates.parent_id);\n const hints = parentIssue.child_order_hints ?? [];\n\n // Only append if not already in hints\n if (!hints.includes(internalId)) {\n parentIssue.child_order_hints = [...hints, internalId];\n parentIssue.version += 1;\n parentIssue.updated_at = now();\n await writeIssue(dataSyncDir, parentIssue);\n }\n } catch {\n // Parent not found or other error - skip order hint update\n }\n }\n\n // Propagate spec_path to children when parent's spec changes\n if (updates.spec_path !== undefined && issue.spec_path && issue.spec_path !== oldSpecPath) {\n const allIssues = await listIssues(dataSyncDir);\n const children = allIssues.filter((i) => i.parent_id === issue.id);\n const timestamp = now();\n for (const child of children) {\n if (!child.spec_path \|\| child.spec_path === oldSpecPath) {\n child.spec_path = issue.spec_path;\n child.version += 1;\n child.updated_at = timestamp;\n await writeIssue(dataSyncDir, child);\n }\n }\n }\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n this.output.data({ id: displayId, updated: true }, () => {\n this.output.success(`Updated ${displayId}`);\n });\n }\n\n private async parseUpdates(\n options: UpdateOptions,\n mapping: IdMapping,\n tbdRoot: string,\n ): Promise<{\n title?: string;\n status?: IssueStatusType;\n kind?: IssueKindType;\n priority?: PriorityType;\n assignee?: string \| null;\n description?: string \| null;\n notes?: string \| null;\n due_date?: string \| null;\n deferred_until?: string \| null;\n parent_id?: string \| null;\n spec_path?: string \| null;\n child_order_hints?: string[] \| null;\n addLabels?: string[];\n removeLabels?: string[];\n labels?: string[];\n } \| null> {\n const updates: {\n title?: string;\n status?: IssueStatusType;\n kind?: IssueKindType;\n priority?: PriorityType;\n assignee?: string \| null;\n description?: string \| null;\n notes?: string \| null;\n due_date?: string \| null;\n deferred_until?: string \| null;\n parent_id?: string \| null;\n spec_path?: string \| null;\n child_order_hints?: string[] \| null;\n addLabels?: string[];\n removeLabels?: string[];\n labels?: string[];\n } = {};\n\n // Handle --from-file: read all mutable fields from YAML+Markdown file\n if (options.fromFile) {\n let content: string;\n try {\n content = await readFile(options.fromFile, 'utf-8');\n } catch {\n throw new CLIError(`Failed to read file: ${options.fromFile}`);\n }\n\n try {\n const { frontmatter, description, notes } = parseMarkdownWithFrontmatter(content);\n\n // Extract mutable fields from frontmatter\n if (typeof frontmatter.title === 'string') {\n updates.title = frontmatter.title;\n }\n if (typeof frontmatter.status === 'string') {\n const result = IssueStatus.safeParse(frontmatter.status);\n if (result.success) {\n updates.status = result.data;\n }\n }\n if (typeof frontmatter.kind === 'string') {\n const result = IssueKind.safeParse(frontmatter.kind);\n if (result.success) {\n updates.kind = result.data;\n }\n }\n if (typeof frontmatter.priority === 'number') {\n const priority = parsePriority(String(frontmatter.priority));\n if (priority !== undefined) {\n updates.priority = priority;\n }\n }\n if (frontmatter.assignee !== undefined) {\n updates.assignee = typeof frontmatter.assignee === 'string' ? frontmatter.assignee : null;\n }\n if (frontmatter.due_date !== undefined) {\n updates.due_date = typeof frontmatter.due_date === 'string' ? frontmatter.due_date : null;\n }\n if (frontmatter.deferred_until !== undefined) {\n updates.deferred_until =\n typeof frontmatter.deferred_until === 'string' ? frontmatter.deferred_until : null;\n }\n if (frontmatter.parent_id !== undefined) {\n updates.parent_id =\n typeof frontmatter.parent_id === 'string' ? frontmatter.parent_id : null;\n }\n if (frontmatter.spec_path !== undefined) {\n if (typeof frontmatter.spec_path === 'string' && frontmatter.spec_path) {\n // Validate and normalize the spec path from file\n try {\n const resolved = await resolveAndValidatePath(\n frontmatter.spec_path,\n tbdRoot,\n process.cwd(),\n );\n updates.spec_path = resolved.relativePath;\n } catch (error) {\n throw new ValidationError(getPathErrorMessage(error));\n }\n } else {\n updates.spec_path = null;\n }\n }\n if (Array.isArray(frontmatter.labels)) {\n updates.labels = frontmatter.labels.filter((l): l is string => typeof l === 'string');\n }\n\n // Set description and notes from body\n updates.description = description \|\| null;\n updates.notes = notes \|\| null;\n } catch (error) {\n throw new CLIError(\n `Failed to parse file: ${options.fromFile}: ${error instanceof Error ? error.message : String(error)}`,\n );\n }\n\n return updates;\n }\n\n if (options.title !== undefined) {\n if (!options.title.trim()) {\n throw new ValidationError('Title cannot be empty');\n }\n updates.title = options.title;\n }\n\n if (options.status) {\n const result = IssueStatus.safeParse(options.status);\n if (!result.success) {\n throw new ValidationError(`Invalid status: ${options.status}`);\n }\n updates.status = result.data;\n }\n\n if (options.type) {\n const result = IssueKind.safeParse(options.type);\n if (!result.success) {\n throw new ValidationError(`Invalid type: ${options.type}`);\n }\n updates.kind = result.data;\n }\n\n if (options.priority) {\n // Use shared parsePriority which accepts both \"P1\" and \"1\" formats\n const priority = parsePriority(options.priority);\n if (priority === undefined) {\n throw new ValidationError(`Invalid priority: ${options.priority}. Use P0-P4 or 0-4.`);\n }\n updates.priority = priority;\n }\n\n if (options.assignee !== undefined) {\n updates.assignee = options.assignee \|\| null;\n }\n\n if (options.description !== undefined) {\n updates.description = options.description \|\| null;\n }\n\n if (options.notes !== undefined) {\n updates.notes = options.notes \|\| null;\n }\n\n if (options.notesFile) {\n try {\n updates.notes = await readFile(options.notesFile, 'utf-8');\n } catch {\n throw new CLIError(`Failed to read notes from file: ${options.notesFile}`);\n }\n }\n\n if (options.due !== undefined) {\n updates.due_date = options.due \|\| null;\n }\n\n if (options.defer !== undefined) {\n updates.deferred_until = options.defer \|\| null;\n }\n\n if (options.parent !== undefined) {\n if (options.parent) {\n try {\n updates.parent_id = resolveToInternalId(options.parent, mapping);\n } catch {\n throw new ValidationError(`Invalid parent ID: ${options.parent}`);\n }\n } else {\n updates.parent_id = null;\n }\n }\n\n if (options.spec !== undefined) {\n if (options.spec) {\n // Non-empty spec path: validate and normalize\n try {\n const resolved = await resolveAndValidatePath(options.spec, tbdRoot, process.cwd());\n updates.spec_path = resolved.relativePath;\n } catch (error) {\n throw new ValidationError(getPathErrorMessage(error));\n }\n } else {\n // Empty string: clear the spec path (no validation needed)\n updates.spec_path = null;\n }\n }\n\n if (options.addLabel && options.addLabel.length > 0) {\n updates.addLabels = options.addLabel;\n }\n\n if (options.removeLabel && options.removeLabel.length > 0) {\n updates.removeLabels = options.removeLabel;\n }\n\n // Handle --child-order: set the ordering hints for children\n if (options.childOrder !== undefined) {\n if (options.childOrder === '' \|\| options.childOrder === '\"\"') {\n // Empty string: clear the hints\n updates.child_order_hints = null;\n } else {\n // Parse comma-separated short IDs and resolve to internal IDs\n const shortIds = options.childOrder.split(',').map((s) => s.trim());\n const internalIds: string[] = [];\n for (const shortId of shortIds) {\n if (!shortId) continue; // Skip empty strings\n try {\n const internalId = resolveToInternalId(shortId, mapping);\n internalIds.push(internalId);\n } catch {\n throw new ValidationError(`Invalid ID in --child-order: ${shortId}`);\n }\n }\n updates.child_order_hints = internalIds.length > 0 ? internalIds : null;\n }\n }\n\n return updates;\n }\n}\n\nexport const updateCommand = new Command('update')\n .description('Update an issue')\n .argument('<id>', 'Issue ID')\n .option('--from-file <path>', 'Update all fields from YAML+Markdown file')\n .option('--title <text>', 'Set title')\n .option('--status <status>', 'Set status')\n .option('--type <type>', 'Set type')\n .option('--priority <0-4>', 'Set priority')\n .option('--assignee <name>', 'Set assignee')\n .option('--description <text>', 'Set description')\n .option('--notes <text>', 'Set working notes')\n .option('--notes-file <path>', 'Set notes from file')\n .option('--due <date>', 'Set due date')\n .option('--defer <date>', 'Set deferred until date')\n .option('--add-label <label>', 'Add label', (val, prev: string[] = []) => [...prev, val])\n .option('--remove-label <label>', 'Remove label', (val, prev: string[] = []) => [...prev, val])\n .option('--parent <id>', 'Set parent')\n .option('--spec <path>', 'Set or clear spec path (empty string clears)')\n .option('--child-order <ids>', 'Set child ordering hints (comma-separated IDs)')\n .action(async (id, options, command) => {\n const handler = new UpdateHandler(command);\n await handler.run(id, options);\n });\n","/\n `tbd close` - Close an issue.\n \n See: tbd-design.md §4.4 Close\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError } from '../lib/errors.js';\nimport { readIssue, writeIssue } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\n\ninterface CloseOptions {\n reason?: string;\n}\n\nclass CloseHandler extends BaseCommand {\n async run(id: string, options: CloseOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Get display ID for output\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n // Idempotent: if already closed, succeed silently without modification\n if (issue.status === 'closed') {\n this.output.data({ id: displayId, closed: true, alreadyClosed: true }, () => {\n this.output.success(`Closed ${displayId}`);\n });\n return;\n }\n\n if (this.checkDryRun('Would close issue', { id: internalId, reason: options.reason })) {\n return;\n }\n\n // Update issue\n issue.status = 'closed';\n issue.closed_at = now();\n issue.close_reason = options.reason ?? null;\n issue.version += 1;\n issue.updated_at = now();\n\n // Save\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to close issue');\n\n this.output.data({ id: displayId, closed: true }, () => {\n this.output.success(`Closed ${displayId}`);\n });\n }\n}\n\nexport const closeCommand = new Command('close')\n .description('Close an issue')\n .argument('<id>', 'Issue ID')\n .option('--reason <text>', 'Close reason')\n .action(async (id, options, command) => {\n const handler = new CloseHandler(command);\n await handler.run(id, options);\n });\n","/\n `tbd reopen` - Reopen a closed issue.\n \n See: tbd-design.md §4.4 Reopen\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, CLIError } from '../lib/errors.js';\nimport { readIssue, writeIssue } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\n\ninterface ReopenOptions {\n reason?: string;\n}\n\nclass ReopenHandler extends BaseCommand {\n async run(id: string, options: ReopenOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Check if not closed\n if (issue.status !== 'closed') {\n throw new CLIError(`Issue ${id} is not closed (status: ${issue.status})`);\n }\n\n if (this.checkDryRun('Would reopen issue', { id: internalId, reason: options.reason })) {\n return;\n }\n\n // Update issue\n issue.status = 'open';\n issue.closed_at = null;\n issue.close_reason = null;\n issue.version += 1;\n issue.updated_at = now();\n\n // Optionally store reopen reason in notes if provided\n if (options.reason) {\n const reopenNote = `Reopened: ${options.reason}`;\n issue.notes = issue.notes ? `${issue.notes}\\n\\n${reopenNote}` : reopenNote;\n }\n\n // Save\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to reopen issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n this.output.data({ id: displayId, reopened: true }, () => {\n this.output.success(`Reopened ${displayId}`);\n });\n }\n}\n\nexport const reopenCommand = new Command('reopen')\n .description('Reopen a closed issue')\n .argument('<id>', 'Issue ID')\n .option('--reason <text>', 'Reopen reason')\n .action(async (id, options, command) => {\n const handler = new ReopenHandler(command);\n await handler.run(id, options);\n });\n","/\n `tbd ready` - List issues ready to work on.\n \n See: tbd-design.md §4.4 Ready\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { loadDataContext } from '../lib/data-context.js';\nimport { requireInit, NotInitializedError, ValidationError } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport { IssueKind } from '../../lib/schemas.js';\nimport type { Issue, IssueKindType } from '../../lib/types.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { comparisonChain } from '../../lib/comparison-chain.js';\nimport {\n formatIssueLine,\n formatIssueLong,\n formatIssueHeader,\n type IssueForDisplay,\n} from '../lib/issue-format.js';\n\ninterface ReadyOptions {\n type?: string;\n limit?: string;\n long?: boolean;\n}\n\nclass ReadyHandler extends BaseCommand {\n async run(options: ReadyOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Load data context and issues\n let issues: Issue[];\n let dataCtx;\n try {\n dataCtx = await loadDataContext(tbdRoot);\n issues = await listIssues(dataCtx.dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Build lookup map for dependency resolution\n const issueMap = new Map(issues.map((i) => [i.id, i]));\n\n // Build reverse lookup: which issues are blocked by which\n // \"blocks\" dependency means \"this issue blocks target\"\n const blockedByMap = new Map<string, string[]>();\n for (const issue of issues) {\n for (const dep of issue.dependencies) {\n if (dep.type === 'blocks') {\n const existing = blockedByMap.get(dep.target) ?? [];\n existing.push(issue.id);\n blockedByMap.set(dep.target, existing);\n }\n }\n }\n\n // Filter for ready issues\n let readyIssues = issues.filter((issue) => {\n // Must be open (not in_progress, blocked, deferred, or closed)\n if (issue.status !== 'open') return false;\n\n // Must not have an assignee\n if (issue.assignee) return false;\n\n // Must not have unresolved blocking dependencies\n const blockers = blockedByMap.get(issue.id) ?? [];\n const hasUnresolvedBlocker = blockers.some((blockerId) => {\n const blocker = issueMap.get(blockerId);\n return blocker && blocker.status !== 'closed';\n });\n if (hasUnresolvedBlocker) return false;\n\n return true;\n });\n\n // Filter by type if specified\n if (options.type) {\n const result = IssueKind.safeParse(options.type);\n if (!result.success) {\n throw new ValidationError(`Invalid type: ${options.type}`);\n }\n const kind: IssueKindType = result.data;\n readyIssues = readyIssues.filter((i) => i.kind === kind);\n }\n\n // Sort by priority (lowest number = highest priority), then by ID for determinism\n readyIssues.sort(\n comparisonChain<Issue>()\n .compare((i) => i.priority)\n .compare((i) => i.id)\n .result(),\n );\n\n // Apply limit\n readyIssues = applyLimit(readyIssues, options.limit);\n\n const { mapping, prefix } = dataCtx;\n const showDebug = this.ctx.debug;\n\n // Format output\n const outputIssues = readyIssues.map((i) => ({\n id: showDebug ? formatDebugId(i.id, mapping, prefix) : formatDisplayId(i.id, mapping, prefix),\n priority: i.priority,\n status: i.status,\n kind: i.kind,\n title: i.title,\n description: i.description,\n }));\n\n this.output.data(outputIssues, () => {\n if (outputIssues.length === 0) {\n this.output.info('No ready issues found');\n return;\n }\n\n const colors = this.output.getColors();\n console.log(formatIssueHeader(colors));\n for (const issue of outputIssues) {\n if (options.long) {\n console.log(formatIssueLong(issue as IssueForDisplay, colors));\n } else {\n console.log(formatIssueLine(issue as IssueForDisplay, colors));\n }\n }\n });\n }\n}\n\nexport const readyCommand = new Command('ready')\n .description('List issues ready to work on (open, unblocked, unclaimed)')\n .option('--type <type>', 'Filter by type')\n .option('--limit <n>', 'Limit results')\n .option('--long', 'Show descriptions')\n .action(async (options, command) => {\n const handler = new ReadyHandler(command);\n await handler.run(options);\n });\n","/\n `tbd blocked` - List blocked issues.\n \n See: tbd-design.md §4.4 Blocked\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { loadDataContext, type TbdDataContext } from '../lib/data-context.js';\nimport { requireInit, NotInitializedError } from '../lib/errors.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { listIssues } from '../../file/storage.js';\nimport type { Issue } from '../../lib/types.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { comparisonChain } from '../../lib/comparison-chain.js';\nimport {\n formatIssueLine,\n formatIssueLong,\n formatIssueHeader,\n formatIssueCompact,\n type IssueForDisplay,\n} from '../lib/issue-format.js';\n\ninterface BlockedOptions {\n limit?: string;\n long?: boolean;\n}\n\nclass BlockedHandler extends BaseCommand {\n async run(options: BlockedOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Load data context and issues\n let issues: Issue[];\n let dataCtx: TbdDataContext;\n try {\n dataCtx = await loadDataContext(tbdRoot);\n issues = await listIssues(dataCtx.dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n const { mapping, prefix } = dataCtx;\n const showDebug = this.ctx.debug;\n\n // Build lookup map for dependency resolution\n const issueMap = new Map(issues.map((i) => [i.id, i]));\n\n // Build reverse lookup: which issues are blocked by which\n // \"blocks\" dependency means \"this issue blocks target\"\n const blockedByMap = new Map<string, string[]>();\n for (const issue of issues) {\n for (const dep of issue.dependencies) {\n if (dep.type === 'blocks') {\n const existing = blockedByMap.get(dep.target) ?? [];\n existing.push(issue.id);\n blockedByMap.set(dep.target, existing);\n }\n }\n }\n\n // Find blocked issues (status=blocked OR has unresolved blocking dependencies)\n let blockedIssues: {\n issue: Issue;\n blockedBy: { id: string; issue: Issue }[];\n explicitlyBlocked?: boolean;\n }[] = [];\n\n for (const issue of issues) {\n // Skip closed issues\n if (issue.status === 'closed') continue;\n\n const unresolvedBlockers: { id: string; issue: Issue }[] = [];\n\n // Check if status is explicitly blocked\n const isExplicitlyBlocked = issue.status === 'blocked';\n\n // Check for unresolved blocking dependencies (from reverse lookup)\n const blockerIds = blockedByMap.get(issue.id) ?? [];\n for (const blockerId of blockerIds) {\n const blocker = issueMap.get(blockerId);\n if (blocker && blocker.status !== 'closed') {\n const blockerDisplayId = showDebug\n ? formatDebugId(blockerId, mapping, prefix)\n : formatDisplayId(blockerId, mapping, prefix);\n unresolvedBlockers.push({ id: blockerDisplayId, issue: blocker });\n }\n }\n\n if (isExplicitlyBlocked \|\| unresolvedBlockers.length > 0) {\n blockedIssues.push({\n issue,\n blockedBy: unresolvedBlockers,\n explicitlyBlocked: isExplicitlyBlocked && unresolvedBlockers.length === 0,\n });\n }\n }\n\n // Sort by priority\n blockedIssues.sort(\n comparisonChain<{ issue: Issue }>()\n .compare((b) => b.issue.priority)\n .compare((b) => b.issue.id)\n .result(),\n );\n\n // Apply limit\n blockedIssues = applyLimit(blockedIssues, options.limit);\n\n // Format output\n const colors = this.output.getColors();\n const outputIssues = blockedIssues.map((b) => {\n const displayId = showDebug\n ? formatDebugId(b.issue.id, mapping, prefix)\n : formatDisplayId(b.issue.id, mapping, prefix);\n return {\n id: displayId,\n priority: b.issue.priority,\n status: b.issue.status,\n kind: b.issue.kind,\n title: b.issue.title,\n description: b.issue.description,\n blockedBy: b.explicitlyBlocked\n ? ['(explicitly blocked)']\n : b.blockedBy.map((blocker) =>\n formatIssueCompact(\n {\n id: blocker.id,\n priority: blocker.issue.priority,\n status: blocker.issue.status,\n kind: blocker.issue.kind,\n title: blocker.issue.title.slice(0, 20),\n },\n colors,\n ),\n ),\n };\n });\n\n this.output.data(outputIssues, () => {\n if (outputIssues.length === 0) {\n this.output.info('No blocked issues found');\n return;\n }\n\n console.log(formatIssueHeader(colors));\n for (const issue of outputIssues) {\n if (options.long) {\n console.log(formatIssueLong(issue as IssueForDisplay, colors));\n } else {\n console.log(formatIssueLine(issue as IssueForDisplay, colors));\n }\n // Show blockers on indented line\n console.log(` ${colors.dim('blocked by:')} ${issue.blockedBy.join(', ')}`);\n }\n });\n }\n}\n\nexport const blockedCommand = new Command('blocked')\n .description('List blocked issues')\n .option('--limit <n>', 'Limit results')\n .option('--long', 'Show descriptions')\n .action(async (options, command) => {\n const handler = new BlockedHandler(command);\n await handler.run(options);\n });\n","/\n `tbd stale` - List stale issues.\n \n See: tbd-design.md §4.4 Stale\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { loadDataContext } from '../lib/data-context.js';\nimport { requireInit, NotInitializedError, ValidationError } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport { IssueStatus } from '../../lib/schemas.js';\nimport type { Issue, IssueStatusType } from '../../lib/types.js';\nimport { nowDate, parseDate } from '../../utils/time-utils.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { comparisonChain, ordering } from '../../lib/comparison-chain.js';\n\ninterface StaleOptions {\n days?: string;\n status?: string;\n limit?: string;\n}\n\nclass StaleHandler extends BaseCommand {\n async run(options: StaleOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Load data context and issues\n let issues: Issue[];\n let dataCtx;\n try {\n dataCtx = await loadDataContext(tbdRoot);\n issues = await listIssues(dataCtx.dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Parse days threshold (default: 7)\n const daysThreshold = options.days ? parseInt(options.days, 10) : 7;\n if (isNaN(daysThreshold) \|\| daysThreshold < 0) {\n throw new ValidationError('Invalid days value. Must be a positive number.');\n }\n\n // Parse status filter (default: open, in_progress)\n const allowedStatuses = new Set<IssueStatusType>();\n if (options.status) {\n const statuses = options.status.split(',').map((s) => s.trim());\n for (const s of statuses) {\n const result = IssueStatus.safeParse(s);\n if (!result.success) {\n throw new ValidationError(`Invalid status: ${s}`);\n }\n allowedStatuses.add(result.data);\n }\n } else {\n // Default: open and in_progress\n allowedStatuses.add('open');\n allowedStatuses.add('in_progress');\n }\n\n const currentTime = nowDate();\n const msPerDay = 24 60 * 60 * 1000;\n\n // Filter stale issues\n let staleIssues: { issue: Issue; daysSinceUpdate: number }[] = [];\n\n for (const issue of issues) {\n // Check status filter\n if (!allowedStatuses.has(issue.status)) continue;\n\n // Calculate days since last update\n const updatedAt = parseDate(issue.updated_at);\n if (!updatedAt) continue;\n const daysSinceUpdate = Math.floor((currentTime.getTime() - updatedAt.getTime()) / msPerDay);\n\n if (daysSinceUpdate >= daysThreshold) {\n staleIssues.push({ issue, daysSinceUpdate });\n }\n }\n\n // Sort by days since update (most stale first), then by ID for determinism\n staleIssues.sort(\n comparisonChain<{ issue: Issue; daysSinceUpdate: number }>()\n .compare((s) => s.daysSinceUpdate, ordering.reversed)\n .compare((s) => s.issue.id)\n .result(),\n );\n\n // Apply limit\n staleIssues = applyLimit(staleIssues, options.limit);\n\n const { mapping, prefix } = dataCtx;\n const showDebug = this.ctx.debug;\n\n // Format output\n const outputIssues = staleIssues.map((s) => ({\n id: showDebug\n ? formatDebugId(s.issue.id, mapping, prefix)\n : formatDisplayId(s.issue.id, mapping, prefix),\n days: s.daysSinceUpdate,\n status: s.issue.status,\n title: s.issue.title,\n }));\n\n this.output.data(outputIssues, () => {\n if (outputIssues.length === 0) {\n this.output.info(`No stale issues found (threshold: ${daysThreshold} days)`);\n return;\n }\n\n const colors = this.output.getColors();\n console.log(\n `${colors.dim('ISSUE'.padEnd(12))}${colors.dim('DAYS'.padEnd(6))}${colors.dim('STATUS'.padEnd(14))}${colors.dim('TITLE')}`,\n );\n for (const issue of outputIssues) {\n console.log(\n `${colors.id(issue.id.padEnd(12))}${String(issue.days).padEnd(6)}${issue.status.padEnd(14)}${issue.title}`,\n );\n }\n });\n }\n}\n\nexport const staleCommand = new Command('stale')\n .description('List issues not updated recently')\n .option('--days <n>', 'Days since last update (default: 7)')\n .option('--status <status>', 'Filter by status (default: open, in_progress)')\n .option('--limit <n>', 'Limit results')\n .action(async (options, command) => {\n const handler = new StaleHandler(command);\n await handler.run(options);\n });\n","/*\n `tbd label` - Label management commands.\n \n See: tbd-design.md §4.5 Label Commands\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, NotInitializedError } from '../lib/errors.js';\nimport { readIssue, writeIssue, listIssues } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\n\n// Add label\nclass LabelAddHandler extends BaseCommand {\n async run(id: string, labels: string[]): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n if (this.checkDryRun('Would add labels', { id: internalId, labels })) {\n return;\n }\n\n // Add labels (avoiding duplicates)\n const labelsSet = new Set(issue.labels);\n let added = 0;\n for (const label of labels) {\n if (!labelsSet.has(label)) {\n labelsSet.add(label);\n added++;\n }\n }\n\n if (added === 0) {\n this.output.info('All labels already present');\n return;\n }\n\n issue.labels = [...labelsSet];\n issue.version += 1;\n issue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to update issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n this.output.data({ id: displayId, addedLabels: labels }, () => {\n this.output.success(`Added labels to ${displayId}: ${labels.join(', ')}`);\n });\n }\n}\n\n// Remove label\nclass LabelRemoveHandler extends BaseCommand {\n async run(id: string, labels: string[]): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n if (this.checkDryRun('Would remove labels', { id: internalId, labels })) {\n return;\n }\n\n // Remove labels\n const removeSet = new Set(labels);\n const originalCount = issue.labels.length;\n issue.labels = issue.labels.filter((l) => !removeSet.has(l));\n const removed = originalCount - issue.labels.length;\n\n if (removed === 0) {\n this.output.info('No matching labels found');\n return;\n }\n\n issue.version += 1;\n issue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to update issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n this.output.data({ id: displayId, removedLabels: labels }, () => {\n this.output.success(`Removed labels from ${displayId}: ${labels.join(', ')}`);\n });\n }\n}\n\n// List labels\nclass LabelListHandler extends BaseCommand {\n async run(): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load all issues and collect unique labels\n let issues;\n try {\n issues = await listIssues(dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Collect labels with counts\n const labelCounts = new Map<string, number>();\n for (const issue of issues) {\n for (const label of issue.labels) {\n labelCounts.set(label, (labelCounts.get(label) ?? 0) + 1);\n }\n }\n\n // Sort by count (descending), then alphabetically\n const sortedLabels = [...labelCounts.entries()].sort((a, b) => {\n if (b[1] !== a[1]) return b[1] - a[1];\n return a[0].localeCompare(b[0]);\n });\n\n const output = sortedLabels.map(([label, count]) => ({ label, count }));\n\n this.output.data(output, () => {\n if (output.length === 0) {\n this.output.info('No labels in use');\n return;\n }\n\n const colors = this.output.getColors();\n console.log(`${colors.dim('LABEL'.padEnd(24))}${colors.dim('COUNT')}`);\n for (const { label, count } of output) {\n console.log(`${colors.label(label.padEnd(24))}${count}`);\n }\n });\n }\n}\n\nconst addCommand = new Command('add')\n .description('Add labels to an issue')\n .argument('<id>', 'Issue ID')\n .argument('<labels...>', 'Labels to add')\n .action(async (id, labels, _options, command) => {\n const handler = new LabelAddHandler(command);\n await handler.run(id, labels);\n });\n\nconst removeCommand = new Command('remove')\n .description('Remove labels from an issue')\n .argument('<id>', 'Issue ID')\n .argument('<labels...>', 'Labels to remove')\n .action(async (id, labels, _options, command) => {\n const handler = new LabelRemoveHandler(command);\n await handler.run(id, labels);\n });\n\nconst listLabelCommand = new Command('list')\n .description('List all labels in use')\n .action(async (_options, command) => {\n const handler = new LabelListHandler(command);\n await handler.run();\n });\n\nexport const labelCommand = new Command('label')\n .description('Manage issue labels')\n .addCommand(addCommand)\n .addCommand(removeCommand)\n .addCommand(listLabelCommand);\n","/\n `tbd dep` - Dependency management commands.\n \n See: tbd-design.md §4.6 Dependency Commands\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, ValidationError } from '../lib/errors.js';\nimport { readIssue, writeIssue, listIssues } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport type { Issue } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\n\n// Add dependency: \"A depends on B\" means B blocks A\nclass DependsAddHandler extends BaseCommand {\n async run(issueId: string, dependsOnId: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve both IDs to internal IDs\n // issueId = the issue that depends on something\n // dependsOnId = the issue it depends on (the blocker)\n let internalIssueId: string;\n let internalDependsOnId: string;\n try {\n internalIssueId = resolveToInternalId(issueId, mapping);\n } catch {\n throw new NotFoundError('Issue', issueId);\n }\n try {\n internalDependsOnId = resolveToInternalId(dependsOnId, mapping);\n } catch {\n throw new NotFoundError('Issue', dependsOnId);\n }\n\n // Verify issueId exists\n try {\n await readIssue(dataSyncDir, internalIssueId);\n } catch {\n throw new NotFoundError('Issue', issueId);\n }\n\n // Load the blocking issue (dependsOnId) - this is where we add the dependency\n let blockerIssue;\n try {\n blockerIssue = await readIssue(dataSyncDir, internalDependsOnId);\n } catch {\n throw new NotFoundError('Issue', dependsOnId);\n }\n\n // Check for self-reference\n if (internalIssueId === internalDependsOnId) {\n throw new ValidationError('Issue cannot depend on itself');\n }\n\n if (\n this.checkDryRun('Would add dependency', {\n issue: internalIssueId,\n dependsOn: internalDependsOnId,\n })\n ) {\n return;\n }\n\n // Check if dependency already exists (dependsOnId blocks issueId)\n const exists = blockerIssue.dependencies.some(\n (dep) => dep.type === 'blocks' && dep.target === internalIssueId,\n );\n if (exists) {\n this.output.info('Dependency already exists');\n return;\n }\n\n // Add the dependency: dependsOnId blocks issueId\n blockerIssue.dependencies.push({ type: 'blocks', target: internalIssueId });\n blockerIssue.version += 1;\n blockerIssue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, blockerIssue);\n }, 'Failed to update issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayIssueId = showDebug\n ? formatDebugId(internalIssueId, mapping, prefix)\n : formatDisplayId(internalIssueId, mapping, prefix);\n const displayDependsOnId = showDebug\n ? formatDebugId(internalDependsOnId, mapping, prefix)\n : formatDisplayId(internalDependsOnId, mapping, prefix);\n\n this.output.data({ issue: displayIssueId, dependsOn: displayDependsOnId }, () => {\n this.output.success(`${displayIssueId} now depends on ${displayDependsOnId}`);\n });\n }\n}\n\n// Remove dependency: \"A no longer depends on B\" means B no longer blocks A\nclass DependsRemoveHandler extends BaseCommand {\n async run(issueId: string, dependsOnId: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve both IDs to internal IDs\n let internalIssueId: string;\n let internalDependsOnId: string;\n try {\n internalIssueId = resolveToInternalId(issueId, mapping);\n } catch {\n throw new NotFoundError('Issue', issueId);\n }\n try {\n internalDependsOnId = resolveToInternalId(dependsOnId, mapping);\n } catch {\n throw new NotFoundError('Issue', dependsOnId);\n }\n\n // Load the blocker issue (dependsOnId) - this is where the dependency is stored\n let blockerIssue;\n try {\n blockerIssue = await readIssue(dataSyncDir, internalDependsOnId);\n } catch {\n throw new NotFoundError('Issue', dependsOnId);\n }\n\n if (\n this.checkDryRun('Would remove dependency', {\n issue: internalIssueId,\n dependsOn: internalDependsOnId,\n })\n ) {\n return;\n }\n\n // Find and remove the dependency (dependsOnId blocks issueId)\n const initialLength = blockerIssue.dependencies.length;\n blockerIssue.dependencies = blockerIssue.dependencies.filter(\n (dep) => !(dep.type === 'blocks' && dep.target === internalIssueId),\n );\n\n if (blockerIssue.dependencies.length === initialLength) {\n this.output.info('Dependency not found');\n return;\n }\n\n blockerIssue.version += 1;\n blockerIssue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, blockerIssue);\n }, 'Failed to update issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayIssueId = showDebug\n ? formatDebugId(internalIssueId, mapping, prefix)\n : formatDisplayId(internalIssueId, mapping, prefix);\n const displayDependsOnId = showDebug\n ? formatDebugId(internalDependsOnId, mapping, prefix)\n : formatDisplayId(internalDependsOnId, mapping, prefix);\n\n this.output.data({ issue: displayIssueId, removed: displayDependsOnId }, () => {\n this.output.success(`${displayIssueId} no longer depends on ${displayDependsOnId}`);\n });\n }\n}\n\n// List dependencies\nclass DependsListHandler extends BaseCommand {\n async run(id: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution and display\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load the issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load all issues to find reverse dependencies\n let allIssues: Issue[];\n try {\n allIssues = await listIssues(dataSyncDir);\n } catch {\n allIssues = [];\n }\n\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n\n // Find what this issue blocks (from its dependencies)\n const blocks = issue.dependencies\n .filter((dep) => dep.type === 'blocks')\n .map((dep) =>\n showDebug\n ? formatDebugId(dep.target, mapping, prefix)\n : formatDisplayId(dep.target, mapping, prefix),\n );\n\n // Find what blocks this issue (reverse lookup)\n const blockedBy: string[] = [];\n for (const other of allIssues) {\n for (const dep of other.dependencies) {\n if (dep.type === 'blocks' && dep.target === internalId) {\n blockedBy.push(\n showDebug\n ? formatDebugId(other.id, mapping, prefix)\n : formatDisplayId(other.id, mapping, prefix),\n );\n }\n }\n }\n\n const deps = { blocks, blockedBy };\n this.output.data(deps, () => {\n const colors = this.output.getColors();\n if (deps.blocks.length > 0) {\n console.log(`${colors.bold('Blocks:')} ${deps.blocks.join(', ')}`);\n }\n if (deps.blockedBy.length > 0) {\n console.log(`${colors.bold('Blocked by:')} ${deps.blockedBy.join(', ')}`);\n }\n if (deps.blocks.length === 0 && deps.blockedBy.length === 0) {\n console.log('No dependencies');\n }\n });\n }\n}\n\nconst addCommand = new Command('add')\n .description('Add dependency (issue depends on depends-on)')\n .argument('<issue>', 'Issue ID that depends on something')\n .argument('<depends-on>', 'Issue ID that must be completed first')\n .action(async (issue, dependsOn, _options, command) => {\n const handler = new DependsAddHandler(command);\n await handler.run(issue, dependsOn);\n });\n\nconst removeCommand = new Command('remove')\n .description('Remove dependency (issue no longer depends on depends-on)')\n .argument('<issue>', 'Issue ID')\n .argument('<depends-on>', 'Issue ID it depended on')\n .action(async (issue, dependsOn, _options, command) => {\n const handler = new DependsRemoveHandler(command);\n await handler.run(issue, dependsOn);\n });\n\nconst listDepsCommand = new Command('list')\n .description('List dependencies for an issue')\n .argument('<id>', 'Issue ID')\n .action(async (id, _options, command) => {\n const handler = new DependsListHandler(command);\n await handler.run(id);\n });\n\nexport const depCommand = new Command('dep')\n .description('Manage issue dependencies')\n .addCommand(addCommand)\n .addCommand(removeCommand)\n .addCommand(listDepsCommand);\n","/\n Sync summary formatting utilities.\n \n Provides consistent formatting for sync operation results.\n /\n\n/\n Tallies for a sync direction (sent or received).\n /\nexport interface SyncTallies {\n new: number;\n updated: number;\n deleted: number;\n}\n\n/\n Full sync summary with both directions.\n /\nexport interface SyncSummary {\n sent: SyncTallies;\n received: SyncTallies;\n conflicts: number;\n /* True if push to remote failed /\n pushFailed?: boolean;\n /* Error message if push failed /\n pushError?: string;\n}\n\n/\n Create empty sync tallies.\n /\nexport function emptyTallies(): SyncTallies {\n return { new: 0, updated: 0, deleted: 0 };\n}\n\n/\n Create empty sync summary.\n /\nexport function emptySummary(): SyncSummary {\n return {\n sent: emptyTallies(),\n received: emptyTallies(),\n conflicts: 0,\n };\n}\n\n/\n Check if tallies have any non-zero values.\n /\nexport function hasTallies(tallies: SyncTallies): boolean {\n return tallies.new > 0 \|\| tallies.updated > 0 \|\| tallies.deleted > 0;\n}\n\n/\n Format tallies for display (e.g., \"1 new, 2 updated\").\n * Omits zero counts.\n /\nexport function formatTallies(tallies: SyncTallies): string {\n const parts: string[] = [];\n\n if (tallies.new > 0) {\n parts.push(`${tallies.new} new`);\n }\n if (tallies.updated > 0) {\n parts.push(`${tallies.updated} updated`);\n }\n if (tallies.deleted > 0) {\n parts.push(`${tallies.deleted} deleted`);\n }\n\n return parts.join(', ');\n}\n\n/\n Format sync summary for display.\n \n Examples:\n * - \"sent 1 new\"\n * - \"sent 2 updated, received 1 new\"\n * - \"received 3 new, 1 updated\"\n * - \"\" (empty if nothing to report - caller should show \"Already in sync\")\n /\nexport function formatSyncSummary(summary: SyncSummary): string {\n const parts: string[] = [];\n\n const sentStr = formatTallies(summary.sent);\n const receivedStr = formatTallies(summary.received);\n\n if (sentStr) {\n parts.push(`sent ${sentStr}`);\n }\n if (receivedStr) {\n parts.push(`received ${receivedStr}`);\n }\n\n if (parts.length === 0) {\n return '';\n }\n\n let result = parts.join(', ');\n\n if (summary.conflicts > 0) {\n result += ` (${summary.conflicts} conflict${summary.conflicts === 1 ? '' : 's'} resolved)`;\n }\n\n return result;\n}\n\n/\n Parse git status --porcelain output to get tallies.\n \n @param statusOutput - Output from `git status --porcelain`\n * @returns Tallies for new, updated, deleted files\n /\nexport function parseGitStatus(statusOutput: string): SyncTallies {\n const tallies = emptyTallies();\n\n if (!statusOutput \|\| statusOutput.trim() === '') {\n return tallies;\n }\n\n for (const line of statusOutput.split('\\n')) {\n if (!line) continue;\n\n const statusCode = line.slice(0, 2).trim();\n\n switch (statusCode) {\n case 'A':\n case '??':\n tallies.new++;\n break;\n case 'M':\n case 'MM':\n tallies.updated++;\n break;\n case 'D':\n tallies.deleted++;\n break;\n }\n }\n\n return tallies;\n}\n\n/\n Parse git diff --name-status output to get tallies.\n \n @param diffOutput - Output from `git diff --name-status`\n * @returns Tallies for new, updated, deleted files\n /\nexport function parseGitDiff(diffOutput: string): SyncTallies {\n const tallies = emptyTallies();\n\n if (!diffOutput \|\| diffOutput.trim() === '') {\n return tallies;\n }\n\n for (const line of diffOutput.split('\\n')) {\n if (!line) continue;\n\n const statusCode = line[0];\n\n switch (statusCode) {\n case 'A':\n tallies.new++;\n break;\n case 'M':\n tallies.updated++;\n break;\n case 'D':\n tallies.deleted++;\n break;\n }\n }\n\n return tallies;\n}\n","/\n GitHub URL utilities and content fetching with `gh` CLI fallback.\n \n Consolidates all GitHub-specific URL handling and fetching logic:\n * - GitHub blob URL → raw URL conversion\n * - Direct HTTP fetch with timeout\n * - Fallback to `gh api` on 403 errors (common in restricted environments)\n \n This module is reusable across doc-sync, doc-add, and any future code\n * that needs to fetch content from GitHub.\n /\n\nimport { execFile } from 'node:child_process';\nimport { promisify } from 'node:util';\n\nconst execFileAsync = promisify(execFile);\n\n// =============================================================================\n// GitHub URL Conversion\n// =============================================================================\n\n/\n Regular expression to match GitHub blob URLs.\n \n Matches patterns like:\n * https://github.com/{owner}/{repo}/blob/{ref}/{path}\n /\nconst GITHUB_BLOB_RE = /^https?:\\/\\/github\\.com\\/([^/]+)\\/([^/]+)\\/blob\\/([^/]+)\\/(.+)$/;\n\n/\n Regular expression to match raw.githubusercontent.com URLs.\n \n Matches patterns like:\n * https://raw.githubusercontent.com/{owner}/{repo}/{ref}/{path}\n /\nconst RAW_GITHUB_RE = /^https?:\\/\\/raw\\.githubusercontent\\.com\\/([^/]+)\\/([^/]+)\\/([^/]+)\\/(.+)$/;\n\n/\n Convert a GitHub blob URL to a raw.githubusercontent.com URL.\n \n If the URL is already a raw URL or not a GitHub blob URL, returns it unchanged.\n \n @example\n * githubBlobToRawUrl('https://github.com/org/repo/blob/main/docs/file.md')\n * // => 'https://raw.githubusercontent.com/org/repo/main/docs/file.md'\n \n @example\n * githubBlobToRawUrl('https://raw.githubusercontent.com/org/repo/main/docs/file.md')\n * // => 'https://raw.githubusercontent.com/org/repo/main/docs/file.md' (unchanged)\n /\nexport function githubBlobToRawUrl(url: string): string {\n const match = GITHUB_BLOB_RE.exec(url);\n if (!match) {\n return url;\n }\n const [, owner, repo, ref, path] = match;\n return `https://raw.githubusercontent.com/${owner}/${repo}/${ref}/${path}`;\n}\n\n/\n Check if a URL is a GitHub-hosted URL (github.com or raw.githubusercontent.com).\n /\nexport function isGitHubUrl(url: string): boolean {\n return /^https?:\\/\\/(github\\.com\|raw\\.githubusercontent\\.com)\\//.test(url);\n}\n\n/\n Parse a raw.githubusercontent.com URL into its components.\n \n @returns The parsed components, or null if not a raw GitHub URL\n /\nexport function parseRawGitHubUrl(\n url: string,\n): { owner: string; repo: string; ref: string; path: string } \| null {\n const match = RAW_GITHUB_RE.exec(url);\n if (!match) {\n return null;\n }\n return {\n owner: match[1]!,\n repo: match[2]!,\n ref: match[3]!,\n path: match[4]!,\n };\n}\n\n// =============================================================================\n// HTTP Fetching\n// =============================================================================\n\n/* Default timeout for URL fetches in milliseconds /\nconst DEFAULT_FETCH_TIMEOUT = 30000;\n\n/\n Options for fetching content.\n /\nexport interface FetchOptions {\n /* Timeout in milliseconds (default: 30000) /\n timeout?: number;\n}\n\n/\n Result of a fetch operation.\n /\nexport interface FetchResult {\n /* The fetched content /\n content: string;\n /* Whether the gh CLI was used as a fallback /\n usedGhCli: boolean;\n}\n\n/\n Fetch content from a URL via direct HTTP.\n \n @throws If the request fails or returns a non-OK status\n /\nexport async function directFetch(url: string, options?: FetchOptions): Promise<string> {\n const timeout = options?.timeout ?? DEFAULT_FETCH_TIMEOUT;\n const controller = new AbortController();\n const timer = setTimeout(() => {\n controller.abort();\n }, timeout);\n\n try {\n const response = await fetch(url, {\n signal: controller.signal,\n headers: {\n 'User-Agent': 'get-tbd/1.0',\n Accept: 'text/plain, text/markdown, /',\n },\n });\n\n if (!response.ok) {\n throw new Error(`HTTP ${response.status}: ${response.statusText}`);\n }\n\n return await response.text();\n } finally {\n clearTimeout(timer);\n }\n}\n\n// =============================================================================\n// gh CLI Fetching\n// =============================================================================\n\n/\n Fetch content from a GitHub raw URL using `gh api`.\n \n Converts raw.githubusercontent.com URLs to GitHub API content endpoints\n * and decodes the base64-encoded response.\n \n @throws If the URL is not a GitHub URL or gh CLI fails\n /\nexport async function ghCliFetch(rawUrl: string): Promise<string> {\n const parsed = parseRawGitHubUrl(rawUrl);\n\n if (parsed) {\n try {\n const { stdout } = await execFileAsync('gh', [\n 'api',\n `/repos/${parsed.owner}/${parsed.repo}/contents/${parsed.path}?ref=${parsed.ref}`,\n '--jq',\n '.content',\n '-H',\n 'Accept: application/vnd.github.v3+json',\n ]);\n\n // GitHub API returns base64-encoded content\n const base64Content = stdout.trim();\n return Buffer.from(base64Content, 'base64').toString('utf-8');\n } catch (error) {\n throw new Error(\n `Failed to fetch via gh CLI: ${error instanceof Error ? error.message : String(error)}`,\n );\n }\n }\n\n // For non-raw-GitHub URLs, attempt a direct gh api call\n try {\n const { stdout } = await execFileAsync('gh', ['api', rawUrl]);\n return stdout;\n } catch (error) {\n throw new Error(\n `Failed to fetch via gh CLI: ${error instanceof Error ? error.message : String(error)}`,\n );\n }\n}\n\n// =============================================================================\n// Combined Fetch with Fallback\n// =============================================================================\n\n/\n Fetch content from a URL, falling back to `gh` CLI on 403 errors.\n \n GitHub.com and raw.githubusercontent.com may block requests from\n * certain environments (e.g., CI runners, corporate proxies). When\n * a 403 is received, we retry using `gh api` which authenticates\n * via the user's GitHub CLI token.\n \n This function also auto-converts GitHub blob URLs to raw URLs.\n \n @returns The fetched content and whether gh CLI was used\n * @throws If both direct fetch and gh CLI fallback fail\n /\nexport async function fetchWithGhFallback(\n url: string,\n options?: FetchOptions,\n): Promise<FetchResult> {\n const rawUrl = githubBlobToRawUrl(url);\n\n // Try direct fetch first\n try {\n const content = await directFetch(rawUrl, options);\n return { content, usedGhCli: false };\n } catch (error) {\n const is403 = error instanceof Error && error.message.includes('HTTP 403');\n if (!is403) {\n throw error;\n }\n }\n\n // 403 error - try gh CLI fallback\n const content = await ghCliFetch(rawUrl);\n return { content, usedGhCli: true };\n}\n","/\n DocSync - Sync documentation files from configured sources.\n \n Syncs docs from internal bundled sources and external URLs to .tbd/docs/.\n \n See: docs/project/specs/active/plan-2026-01-26-configurable-doc-cache-sync.md\n /\n\nimport { readdir, readFile, rm, mkdir, access } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport { writeFile } from 'atomically';\nimport { fileURLToPath } from 'node:url';\n\nimport { TBD_DOCS_DIR } from '../lib/paths.js';\nimport { fetchWithGhFallback } from './github-fetch.js';\nimport { readConfig, writeConfig, updateLocalState } from './config.js';\n\n// =============================================================================\n// Types\n// =============================================================================\n\n/\n A parsed document source.\n /\nexport interface DocSource {\n /* Source type: internal bundled or external URL /\n type: 'internal' \| 'url';\n /* The source location - either a relative path or full URL /\n location: string;\n}\n\n/\n Result of a sync operation.\n /\nexport interface SyncResult {\n /* Paths of newly downloaded/copied docs /\n added: string[];\n /* Paths of updated docs (content changed) /\n updated: string[];\n /* Paths of removed docs (no longer in config) /\n removed: string[];\n /* Errors encountered during sync /\n errors: { path: string; error: string }[];\n /* Whether the sync was successful overall /\n success: boolean;\n}\n\n/\n Options for doc sync operations.\n /\nexport interface DocSyncOptions {\n /* If true, don't actually write/delete files (dry run) /\n dryRun?: boolean;\n /* If true, suppress normal output (only report errors) /\n silent?: boolean;\n}\n\n// =============================================================================\n// Constants\n// =============================================================================\n\n/* Prefix for internal bundled doc sources /\nconst INTERNAL_PREFIX = 'internal:';\n\n// =============================================================================\n// DocSync Class\n// =============================================================================\n\n/\n Syncs documentation files from configured sources.\n \n Supports:\n * - Internal bundled docs (using internal: prefix)\n * - External URLs (raw.githubusercontent.com, etc.)\n /\nexport class DocSync {\n private readonly docsDir: string;\n\n /\n Create a new DocSync instance.\n \n @param tbdRoot - The tbd project root directory (parent of .tbd/)\n * @param config - The doc_cache configuration mapping dest paths to sources\n /\n constructor(\n private readonly tbdRoot: string,\n private readonly config: Record<string, string>,\n ) {\n this.docsDir = join(tbdRoot, TBD_DOCS_DIR);\n }\n\n /\n Parse a source string into a DocSource.\n \n @example\n * parseSource('internal:shortcuts/standard/commit-code.md')\n * // => { type: 'internal', location: 'shortcuts/standard/commit-code.md' }\n \n @example\n * parseSource('https://raw.githubusercontent.com/org/repo/main/file.md')\n * // => { type: 'url', location: 'https://...' }\n /\n parseSource(source: string): DocSource {\n if (source.startsWith(INTERNAL_PREFIX)) {\n return {\n type: 'internal',\n location: source.slice(INTERNAL_PREFIX.length),\n };\n }\n\n // Anything else is treated as a URL\n return {\n type: 'url',\n location: source,\n };\n }\n\n /\n Fetch content from a source.\n \n @throws If the source cannot be fetched\n /\n async fetchContent(source: DocSource): Promise<string> {\n if (source.type === 'internal') {\n return this.fetchInternalContent(source.location);\n }\n return this.fetchUrlContent(source.location);\n }\n\n /\n Fetch content from an internal bundled doc.\n /\n private async fetchInternalContent(location: string): Promise<string> {\n const basePaths = getDocsBasePath();\n\n for (const basePath of basePaths) {\n const fullPath = join(basePath, location);\n try {\n await access(fullPath);\n return await readFile(fullPath, 'utf-8');\n } catch {\n // Try next path\n }\n }\n\n throw new Error(`Internal doc not found: ${location}`);\n }\n\n /\n Fetch content from a URL (with gh CLI fallback on 403).\n /\n private async fetchUrlContent(url: string): Promise<string> {\n const { content } = await fetchWithGhFallback(url);\n return content;\n }\n\n /\n Get the current state of the docs directory.\n * Returns a set of relative paths that exist in .tbd/docs/.\n /\n async getCurrentState(): Promise<Set<string>> {\n const paths = new Set<string>();\n\n try {\n await access(this.docsDir);\n } catch {\n // Directory doesn't exist yet\n return paths;\n }\n\n await this.scanDirectory(this.docsDir, '', paths);\n return paths;\n }\n\n /\n Recursively scan a directory and add all .md file paths to the set.\n /\n private async scanDirectory(baseDir: string, prefix: string, paths: Set<string>): Promise<void> {\n try {\n const dirEntries = await readdir(baseDir, { withFileTypes: true });\n\n for (const entry of dirEntries) {\n const relativePath = prefix ? `${prefix}/${entry.name}` : entry.name;\n\n if (entry.isDirectory()) {\n await this.scanDirectory(join(baseDir, entry.name), relativePath, paths);\n } else if (entry.isFile() && entry.name.endsWith('.md')) {\n paths.add(relativePath);\n }\n }\n } catch {\n // Directory doesn't exist or not readable\n }\n }\n\n /\n Sync all docs from config to .tbd/docs/.\n \n - Downloads/copies new docs\n * - Updates docs whose source has changed\n * - Removes docs no longer in config\n \n @param options - Sync options (dryRun, silent)\n /\n async sync(options: DocSyncOptions = {}): Promise<SyncResult> {\n const result: SyncResult = {\n added: [],\n updated: [],\n removed: [],\n errors: [],\n success: true,\n };\n\n // Get current state\n const currentPaths = await this.getCurrentState();\n const configPaths = new Set(Object.keys(this.config));\n\n // Process each doc in config\n for (const [destPath, sourceStr] of Object.entries(this.config)) {\n try {\n const source = this.parseSource(sourceStr);\n const content = await this.fetchContent(source);\n const fullPath = join(this.docsDir, destPath);\n\n // Check if file exists and compare content\n let exists = false;\n let existingContent = '';\n\n try {\n existingContent = await readFile(fullPath, 'utf-8');\n exists = true;\n } catch {\n // File doesn't exist\n }\n\n if (!exists) {\n // New file\n if (!options.dryRun) {\n await mkdir(dirname(fullPath), { recursive: true });\n await writeFile(fullPath, content);\n }\n result.added.push(destPath);\n } else if (existingContent !== content) {\n // Content changed\n if (!options.dryRun) {\n await writeFile(fullPath, content);\n }\n result.updated.push(destPath);\n }\n // else: unchanged, do nothing\n } catch (err) {\n result.errors.push({\n path: destPath,\n error: (err as Error).message,\n });\n result.success = false;\n }\n }\n\n // Remove docs not in config\n for (const existingPath of currentPaths) {\n if (!configPaths.has(existingPath)) {\n try {\n if (!options.dryRun) {\n await rm(join(this.docsDir, existingPath));\n }\n result.removed.push(existingPath);\n } catch (err) {\n result.errors.push({\n path: existingPath,\n error: `Failed to remove: ${(err as Error).message}`,\n });\n }\n }\n }\n\n return result;\n }\n\n /\n Get a status of what would change without actually making changes.\n /\n async status(): Promise<SyncResult> {\n return this.sync({ dryRun: true });\n }\n}\n\n// =============================================================================\n// Helper Functions\n// =============================================================================\n\n/\n Get base docs paths (with fallbacks for development).\n * Matches the logic in setup.ts.\n /\nfunction getDocsBasePath(): string[] {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n return [\n // Bundled location (dist/docs/)\n join(__dirname, 'docs'),\n // Development: packages/tbd/docs/\n join(__dirname, '..', '..', 'docs'),\n ];\n}\n\n/\n Generate default doc_cache config by scanning bundled docs.\n \n This creates a config entry for each .md file found in the bundled\n * docs directories (shortcuts, guidelines, templates).\n \n @returns A doc_cache config mapping destination paths to internal: sources\n /\nexport async function generateDefaultDocCacheConfig(): Promise<Record<string, string>> {\n const config: Record<string, string> = {};\n const basePaths = getDocsBasePath();\n\n // Find the first valid base path\n let docsDir: string \| null = null;\n for (const path of basePaths) {\n try {\n await access(path);\n docsDir = path;\n break;\n } catch {\n // Try next path\n }\n }\n\n if (!docsDir) {\n return config;\n }\n\n // Directories to scan\n const scanDirs = [\n { subdir: 'shortcuts/system', prefix: 'shortcuts/system' },\n { subdir: 'shortcuts/standard', prefix: 'shortcuts/standard' },\n { subdir: 'guidelines', prefix: 'guidelines' },\n { subdir: 'templates', prefix: 'templates' },\n ];\n\n for (const { subdir, prefix } of scanDirs) {\n const fullDir = join(docsDir, subdir);\n try {\n const entries = await readdir(fullDir, { withFileTypes: true });\n for (const entry of entries) {\n if (entry.isFile() && entry.name.endsWith('.md')) {\n const relativePath = `${prefix}/${entry.name}`;\n config[relativePath] = `${INTERNAL_PREFIX}${relativePath}`;\n }\n }\n } catch {\n // Directory doesn't exist, skip\n }\n }\n\n return config;\n}\n\n/\n Merge user's doc_cache config with default bundled docs.\n \n This ensures:\n * - New bundled docs from tbd updates are added to existing configs\n * - User's custom sources (URLs, etc.) are preserved\n * - User's overrides of bundled docs are respected\n \n @param userConfig - The user's existing doc_cache config (may be undefined/empty)\n * @param defaults - The default config from generateDefaultDocCacheConfig()\n * @returns Merged config with defaults as base, user config overlaid\n /\nexport function mergeDocCacheConfig(\n userConfig: Record<string, string> \| undefined,\n defaults: Record<string, string>,\n): Record<string, string> {\n // Start with defaults, overlay user config (user takes precedence)\n return {\n ...defaults,\n ...userConfig,\n };\n}\n\n/\n Check if docs are stale based on last sync time and configured hours.\n \n @param lastSyncAt - ISO timestamp of last sync (or undefined if never synced)\n * @param autoSyncHours - Hours between auto-syncs (0 = disabled)\n * @returns true if docs should be synced\n /\nexport function isDocsStale(lastSyncAt: string \| undefined, autoSyncHours: number): boolean {\n // Auto-sync disabled\n if (autoSyncHours <= 0) {\n return false;\n }\n\n // Never synced\n if (!lastSyncAt) {\n return true;\n }\n\n const lastSync = new Date(lastSyncAt).getTime();\n const now = Date.now();\n const hoursSinceSync = (now - lastSync) / (1000 60 * 60);\n\n return hoursSinceSync >= autoSyncHours;\n}\n\n// =============================================================================\n// Unified Doc Sync with Defaults\n// =============================================================================\n\n/** Prefix for internal bundled doc sources /\nconst INTERNAL_SOURCE_PREFIX = 'internal:';\n\n/\n Options for syncDocsWithDefaults.\n /\nexport interface SyncDocsOptions {\n /* If true, suppress output (for auto-sync) /\n quiet?: boolean;\n /* If true, don't write files or config (dry run for --status) /\n dryRun?: boolean;\n}\n\n/\n Result of syncDocsWithDefaults.\n /\nexport interface SyncDocsResult {\n /* Paths of newly downloaded/copied docs /\n added: string[];\n /* Paths of updated docs (content changed) /\n updated: string[];\n /* Paths of removed docs (no longer in config) /\n removed: string[];\n /* Entries removed due to missing internal sources /\n pruned: string[];\n /* Whether the config was modified (new defaults merged or stale pruned) /\n configChanged: boolean;\n /* Errors encountered during sync /\n errors: { path: string; error: string }[];\n /* Whether the sync was successful overall /\n success: boolean;\n}\n\n/\n Check if an internal bundled doc exists.\n \n @param location - The internal doc path (without 'internal:' prefix)\n * @returns true if the doc exists in any of the bundled doc paths\n /\nexport async function internalDocExists(location: string): Promise<boolean> {\n const basePaths = getDocsBasePath();\n\n for (const basePath of basePaths) {\n const fullPath = join(basePath, location);\n try {\n await access(fullPath);\n return true;\n } catch {\n // Try next path\n }\n }\n\n return false;\n}\n\n/\n Prune entries from config that point to non-existent internal sources.\n \n This handles the case where a bundled doc is removed in a tbd update -\n * the stale config entry is automatically cleaned up.\n \n @param config - The doc_cache config to prune\n * @returns Object with pruned config and list of removed entries\n /\nexport async function pruneStaleInternals(\n config: Record<string, string>,\n): Promise<{ config: Record<string, string>; pruned: string[] }> {\n const result: Record<string, string> = {};\n const pruned: string[] = [];\n\n for (const [dest, source] of Object.entries(config)) {\n if (source.startsWith(INTERNAL_SOURCE_PREFIX)) {\n const location = source.slice(INTERNAL_SOURCE_PREFIX.length);\n const exists = await internalDocExists(location);\n if (!exists) {\n pruned.push(dest);\n continue; // Don't include in result\n }\n }\n result[dest] = source;\n }\n\n return { config: result, pruned };\n}\n\n/\n Deep equality check for config objects.\n /\nfunction configsEqual(a: Record<string, string>, b: Record<string, string>): boolean {\n const keysA = Object.keys(a).sort();\n const keysB = Object.keys(b).sort();\n\n if (keysA.length !== keysB.length) {\n return false;\n }\n\n for (const key of keysA) {\n if (!Object.hasOwn(b, key) \|\| a[key] !== b[key]) {\n return false;\n }\n }\n\n return true;\n}\n\n/\n Sync docs with merged defaults and auto-pruning.\n \n This is the single entry point for all doc sync operations that need\n * to pick up new bundled docs from tbd upgrades.\n \n Steps:\n * 1. Read current config\n * 2. Generate defaults from bundled docs\n * 3. Merge: defaults as base, user config overlays\n * 4. Prune entries with missing internal sources\n * 5. Sync files to .tbd/docs/\n * 6. Write config if changed\n * 7. Update last_doc_sync_at in state\n \n @param tbdRoot - The tbd project root directory\n * @param options - Sync options (quiet, dryRun)\n * @returns Sync result with added/updated/removed/pruned counts\n /\nexport async function syncDocsWithDefaults(\n tbdRoot: string,\n options: SyncDocsOptions = {},\n): Promise<SyncDocsResult> {\n // 1. Read current config\n const config = await readConfig(tbdRoot);\n const originalFiles = config.docs_cache?.files ?? {};\n\n // 2. Generate defaults from bundled docs\n const defaults = await generateDefaultDocCacheConfig();\n\n // 3. Merge: defaults as base, user config overlays\n const merged = mergeDocCacheConfig(originalFiles, defaults);\n\n // 4. Prune entries with missing internal sources\n const { config: prunedConfig, pruned } = await pruneStaleInternals(merged);\n\n // 5. Sync files to .tbd/docs/\n const docSync = new DocSync(tbdRoot, prunedConfig);\n const syncResult = await docSync.sync({ dryRun: options.dryRun });\n\n // 6. Check if config changed\n const configChanged = !configsEqual(prunedConfig, originalFiles);\n\n // 7. Write config if changed (and not dry run)\n if (configChanged && !options.dryRun) {\n // Preserve existing lookup_path or use default\n const lookupPath = config.docs_cache?.lookup_path ?? [\n '.tbd/docs/shortcuts/system',\n '.tbd/docs/shortcuts/standard',\n ];\n config.docs_cache = {\n lookup_path: lookupPath,\n files: prunedConfig,\n };\n await writeConfig(tbdRoot, config);\n }\n\n // 8. Update state (and not dry run)\n if (!options.dryRun) {\n await updateLocalState(tbdRoot, {\n last_doc_sync_at: new Date().toISOString(),\n });\n }\n\n return {\n added: syncResult.added,\n updated: syncResult.updated,\n removed: syncResult.removed,\n pruned,\n configChanged,\n errors: syncResult.errors,\n success: syncResult.success,\n };\n}\n","/\n `tbd sync` - Synchronization commands.\n \n See: tbd-design.md §4.7 Sync Commands\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport {\n requireInit,\n NotInitializedError,\n SyncError,\n WorktreeMissingError,\n WorktreeCorruptedError,\n} from '../lib/errors.js';\nimport { readConfig } from '../../file/config.js';\nimport { listIssues, readIssue, writeIssue } from '../../file/storage.js';\nimport {\n git,\n withIsolatedIndex,\n mergeIssues,\n pushWithRetry,\n checkWorktreeHealth,\n repairWorktree,\n ensureWorktreeAttached,\n type ConflictEntry,\n type PushResult,\n} from '../../file/git.js';\nimport { resolveDataSyncDir, DATA_SYNC_DIR, WORKTREE_DIR } from '../../lib/paths.js';\nimport { join } from 'node:path';\nimport {\n type SyncSummary,\n type SyncTallies,\n emptySummary,\n emptyTallies,\n hasTallies,\n formatSyncSummary,\n parseGitStatus,\n parseGitDiff,\n} from '../../lib/sync-summary.js';\nimport { syncDocsWithDefaults, type SyncDocsResult } from '../../file/doc-sync.js';\nimport { ValidationError } from '../lib/errors.js';\n\ninterface SyncOptions {\n push?: boolean;\n pull?: boolean;\n status?: boolean;\n force?: boolean;\n fix?: boolean;\n issues?: boolean;\n docs?: boolean;\n}\n\ninterface SyncStatus {\n synced: boolean;\n localChanges: string[];\n remoteChanges: string[];\n syncBranch: string;\n remote: string;\n ahead: number;\n behind: number;\n}\n\nclass SyncHandler extends BaseCommand {\n private dataSyncDir = '';\n private tbdRoot = '';\n\n async run(options: SyncOptions): Promise<void> {\n const tbdRoot = await requireInit();\n this.tbdRoot = tbdRoot;\n\n // Validate mutually exclusive options\n // --push/--pull only apply to issues (network operations)\n if ((options.push \|\| options.pull) && options.docs) {\n throw new ValidationError('--push/--pull only work with issue sync, not --docs');\n }\n\n // Determine what to sync:\n // - If neither --issues nor --docs specified, sync both\n // - If --push or --pull specified (without --issues/--docs), sync only issues\n const hasExclusiveIssueFlag = Boolean(options.push) \|\| Boolean(options.pull);\n const hasSelectiveFlag = Boolean(options.issues) \|\| Boolean(options.docs);\n\n // Sync docs: explicit --docs, or default (no selective flags and no push/pull)\n const syncDocs = Boolean(options.docs) \|\| (!hasSelectiveFlag && !hasExclusiveIssueFlag);\n // Sync issues: explicit --issues, push/pull flags, or default (no selective flags)\n const syncIssues = Boolean(options.issues) \|\| hasExclusiveIssueFlag \|\| !hasSelectiveFlag;\n\n // STEP 1: Sync docs first (fast, local operations)\n // This ensures docs are updated even if issue sync fails\n if (syncDocs) {\n await this.syncDocs(options.status);\n\n // If only doing docs, return after doc sync\n if (!syncIssues) {\n return;\n }\n }\n\n // STEP 2: Sync issues (network operations)\n // Check worktree health before any issue sync operations\n // See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n let worktreeHealth = await checkWorktreeHealth(tbdRoot);\n if (!worktreeHealth.valid) {\n // Auto-create worktree if it's simply missing (normal for fresh clones)\n // Only require --fix for corrupted/prunable states that need repair\n if (worktreeHealth.status === 'missing') {\n // Auto-create worktree - this is the expected state on fresh clones\n await this.doRepairWorktree(tbdRoot, 'missing');\n worktreeHealth = await checkWorktreeHealth(tbdRoot);\n if (!worktreeHealth.valid) {\n throw new WorktreeCorruptedError(\n `Failed to create worktree. Status: ${worktreeHealth.status}. Run 'tbd doctor' for diagnostics.`,\n );\n }\n } else if (options.fix) {\n // Attempt repair when --fix is provided for corrupted/prunable states\n await this.doRepairWorktree(tbdRoot, worktreeHealth.status as 'prunable' \| 'corrupted');\n // Re-check health after repair\n worktreeHealth = await checkWorktreeHealth(tbdRoot);\n if (!worktreeHealth.valid) {\n throw new WorktreeCorruptedError(\n `Worktree repair failed. Status: ${worktreeHealth.status}. Run 'tbd doctor' for diagnostics.`,\n );\n }\n } else {\n // No --fix flag, throw appropriate error for corrupted/prunable states\n if (worktreeHealth.status === 'prunable') {\n throw new WorktreeMissingError(\n \"Worktree directory was deleted but git still tracks it. Run 'tbd sync --fix' or 'tbd doctor --fix' to repair.\",\n );\n }\n if (worktreeHealth.status === 'corrupted') {\n throw new WorktreeCorruptedError(\n `Worktree is corrupted: ${worktreeHealth.error ?? 'unknown error'}. Run 'tbd sync --fix' or 'tbd doctor --fix' to repair.`,\n );\n }\n }\n }\n\n this.dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load config to get sync branch\n let config;\n try {\n config = await readConfig(tbdRoot);\n } catch {\n throw new NotInitializedError('Not a tbd repository. Run `tbd init` first.');\n }\n\n const syncBranch = config.sync.branch;\n const remote = config.sync.remote;\n\n if (options.status) {\n await this.showIssueStatus(syncBranch, remote);\n return;\n }\n\n if (this.checkDryRun('Would sync repository', { syncBranch, remote })) {\n return;\n }\n\n if (options.pull) {\n await this.pullChanges(syncBranch, remote);\n } else if (options.push) {\n await this.pushChanges(syncBranch, remote);\n } else {\n // Full sync: pull then push\n await this.fullSync(syncBranch, remote, options.force);\n }\n }\n\n /\n Sync docs from bundled sources and config.\n * This is a fast, local operation (no network required).\n /\n private async syncDocs(statusOnly?: boolean): Promise<SyncDocsResult> {\n if (statusOnly) {\n // Show status without making changes\n const result = await syncDocsWithDefaults(this.tbdRoot, { dryRun: true });\n this.showDocStatus(result);\n return result;\n }\n\n const spinner = this.output.spinner('Syncing docs...');\n const result = await syncDocsWithDefaults(this.tbdRoot);\n spinner.stop();\n\n // Report results\n this.showDocSyncResult(result);\n return result;\n }\n\n /\n Show doc sync status (what would change).\n /\n private showDocStatus(result: SyncDocsResult): void {\n const colors = this.output.getColors();\n const hasChanges =\n result.added.length > 0 \|\|\n result.updated.length > 0 \|\|\n result.removed.length > 0 \|\|\n result.pruned.length > 0;\n\n if (!hasChanges) {\n this.output.success('Docs up to date');\n return;\n }\n\n console.log(colors.bold('Docs:'));\n if (result.added.length > 0) {\n console.log(` ${colors.success(`+${result.added.length}`)} new doc(s) available`);\n }\n if (result.updated.length > 0) {\n console.log(` ${colors.warn(`~${result.updated.length}`)} doc(s) to update`);\n }\n if (result.removed.length > 0) {\n console.log(` ${colors.error(`-${result.removed.length}`)} doc(s) to remove`);\n }\n if (result.pruned.length > 0) {\n console.log(` ${colors.dim(`${result.pruned.length}`)} stale config entry/entries`);\n }\n }\n\n /\n Show doc sync result after sync.\n /\n private showDocSyncResult(result: SyncDocsResult): void {\n const hasChanges =\n result.added.length > 0 \|\|\n result.updated.length > 0 \|\|\n result.removed.length > 0 \|\|\n result.pruned.length > 0;\n\n if (!hasChanges) {\n this.output.success('Docs up to date');\n return;\n }\n\n // Build summary string\n const parts: string[] = [];\n if (result.added.length > 0) {\n parts.push(`+${result.added.length}`);\n }\n if (result.updated.length > 0) {\n parts.push(`~${result.updated.length}`);\n }\n if (result.removed.length > 0) {\n parts.push(`-${result.removed.length}`);\n }\n\n if (parts.length > 0) {\n this.output.success(`Synced docs: ${parts.join(' ')} doc(s)`);\n }\n\n // Report pruned entries\n if (result.pruned.length > 0) {\n this.output.info(`Removed ${result.pruned.length} stale config entry/entries`);\n }\n\n // Report errors\n for (const err of result.errors) {\n this.output.warn(`Doc sync error: ${err.path}: ${err.error}`);\n }\n }\n\n /\n Attempt to repair an unhealthy worktree.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n /\n private async doRepairWorktree(\n tbdRoot: string,\n status: 'missing' \| 'prunable' \| 'corrupted',\n ): Promise<void> {\n const spinner = this.output.spinner(`Repairing worktree (${status})...`);\n\n try {\n // Use shared repairWorktree from git.ts\n const result = await repairWorktree(tbdRoot, status);\n\n spinner.stop();\n\n if (!result.success) {\n throw new WorktreeCorruptedError(`Failed to repair worktree: ${result.error}`);\n }\n\n if (result.backedUp) {\n this.output.info(`Corrupted worktree backed up to: ${result.backedUp}`);\n }\n this.output.success('Worktree repaired successfully');\n } catch (error) {\n spinner.stop();\n if (error instanceof WorktreeCorruptedError) throw error;\n throw new WorktreeCorruptedError(`Failed to repair worktree: ${(error as Error).message}`);\n }\n }\n\n private async showIssueStatus(syncBranch: string, remote: string): Promise<void> {\n const status = await this.getSyncStatus(syncBranch, remote);\n\n this.output.data(status, () => {\n const colors = this.output.getColors();\n\n if (status.synced) {\n this.output.success('Repository is in sync');\n return;\n }\n\n console.log(colors.bold(`Sync status: ${syncBranch} ↔ ${remote}/${syncBranch}`));\n console.log('');\n\n if (status.ahead > 0) {\n console.log(` ${colors.id(`↑ ${status.ahead}`)} commit(s) ahead (to push)`);\n }\n if (status.behind > 0) {\n console.log(` ${colors.dim(`↓ ${status.behind}`)} commit(s) behind (to pull)`);\n }\n\n if (status.localChanges.length > 0) {\n console.log('');\n console.log(colors.bold('Local changes (not yet pushed):'));\n for (const change of status.localChanges) {\n console.log(` ${change}`);\n }\n }\n\n if (status.remoteChanges.length > 0) {\n console.log('');\n console.log(colors.bold('Remote changes (not yet pulled):'));\n for (const change of status.remoteChanges) {\n console.log(` ${change}`);\n }\n }\n });\n }\n\n private async getSyncStatus(syncBranch: string, remote: string): Promise<SyncStatus> {\n const localChanges: string[] = [];\n const remoteChanges: string[] = [];\n let ahead = 0;\n let behind = 0;\n\n // Check for uncommitted changes in the worktree\n // FIX Bug 2: Previously ran git status on main branch where data-sync/ is gitignored.\n // Now check worktree status directly.\n // See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n try {\n const worktreePath = join(this.tbdRoot, WORKTREE_DIR);\n const status = await git('-C', worktreePath, 'status', '--porcelain');\n if (status) {\n for (const line of status.split('\\n')) {\n if (!line) continue;\n const statusCode = line.slice(0, 2).trim();\n const file = line.slice(3);\n if (statusCode === 'M') {\n localChanges.push(`modified: ${file}`);\n } else if (statusCode === 'A' \|\| statusCode === '??') {\n localChanges.push(`new: ${file}`);\n } else if (statusCode === 'D') {\n localChanges.push(`deleted: ${file}`);\n }\n }\n }\n } catch {\n this.output.debug('Git worktree not available');\n }\n\n // Check for remote changes\n try {\n await git('fetch', remote, syncBranch);\n\n // Count commits ahead/behind\n try {\n const aheadOutput = await git(\n 'rev-list',\n '--count',\n `${remote}/${syncBranch}..${syncBranch}`,\n );\n ahead = parseInt(aheadOutput, 10) \|\| 0;\n } catch {\n this.output.debug('Branch does not exist locally');\n }\n\n try {\n const behindOutput = await git(\n 'rev-list',\n '--count',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n behind = parseInt(behindOutput, 10) \|\| 0;\n } catch {\n this.output.debug('Remote branch does not exist');\n }\n\n // Get commit messages for remote changes\n if (behind > 0) {\n const logOutput = await git(\n 'log',\n '--oneline',\n `${syncBranch}..${remote}/${syncBranch}`,\n '--limit=10',\n );\n for (const line of logOutput.split('\\n')) {\n if (line) {\n remoteChanges.push(line);\n }\n }\n }\n } catch {\n this.output.debug('Remote not available or sync branch does not exist');\n }\n\n return {\n synced:\n localChanges.length === 0 && remoteChanges.length === 0 && ahead === 0 && behind === 0,\n localChanges,\n remoteChanges,\n syncBranch,\n remote,\n ahead,\n behind,\n };\n }\n\n private async pullChanges(syncBranch: string, remote: string): Promise<void> {\n const spinner = this.output.spinner('Pulling from remote...');\n try {\n await git('fetch', remote, syncBranch);\n\n // Get list of changed files\n let behind = 0;\n try {\n const behindOutput = await git(\n 'rev-list',\n '--count',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n behind = parseInt(behindOutput, 10) \|\| 0;\n } catch {\n this.output.debug('Branch does not exist');\n }\n\n spinner.stop();\n if (behind === 0) {\n this.output.success('Already up to date');\n return;\n }\n\n // Merge changes using isolated index\n await withIsolatedIndex(async () => {\n // Read the remote tree\n await git('read-tree', `${remote}/${syncBranch}`);\n\n // Update local branch to remote\n const remoteCommit = await git('rev-parse', `${remote}/${syncBranch}`);\n await git('update-ref', `refs/heads/${syncBranch}`, remoteCommit);\n });\n\n this.output.success(`Pulled ${behind} change(s) from ${remote}/${syncBranch}`);\n } catch (error) {\n spinner.stop();\n const msg = (error as Error).message;\n if (msg.includes('not found') \|\| msg.includes('does not exist')) {\n this.output.info(`Remote branch ${remote}/${syncBranch} does not exist yet`);\n } else {\n throw new SyncError(`Failed to pull: ${msg}`);\n }\n }\n }\n\n /\n Commit any uncommitted changes in the worktree to the sync branch.\n * This must be called before pushing to ensure changes are captured.\n \n @returns Tallies of new/updated/deleted files committed\n /\n private async commitWorktreeChanges(): Promise<SyncTallies> {\n // Use tbdRoot to derive worktree path consistently\n // FIX Bug 1: Previously used process.cwd() which fails if not in repo root\n // See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n const worktreePath = join(this.tbdRoot, WORKTREE_DIR);\n\n try {\n // Ensure worktree is attached to sync branch (repair old tbd repos)\n await ensureWorktreeAttached(worktreePath);\n\n // Check for uncommitted changes (untracked, modified, or deleted)\n const status = await git('-C', worktreePath, 'status', '--porcelain');\n if (!status \|\| status.trim() === '') {\n return emptyTallies(); // Nothing to commit\n }\n\n // Parse status to get tallies\n const tallies = parseGitStatus(status);\n const fileCount = tallies.new + tallies.updated + tallies.deleted;\n\n // Stage all changes\n await git('-C', worktreePath, 'add', '-A');\n\n // Commit the changes\n const timestamp = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 19);\n await git(\n '-C',\n worktreePath,\n 'commit',\n '-m',\n `tbd sync: ${timestamp} (${fileCount} file${fileCount === 1 ? '' : 's'})`,\n );\n\n return tallies;\n } catch (error) {\n // If commit fails (e.g., nothing to commit after staging), that's ok\n const msg = (error as Error).message;\n if (msg.includes('nothing to commit')) {\n return emptyTallies();\n }\n throw error;\n }\n }\n\n private async pushChanges(syncBranch: string, remote: string): Promise<void> {\n const spinner = this.output.spinner('Pushing to remote...');\n try {\n // Commit any uncommitted changes in the worktree before pushing\n const committedTallies = await this.commitWorktreeChanges();\n const committedCount =\n committedTallies.new + committedTallies.updated + committedTallies.deleted;\n if (committedCount > 0) {\n this.output.info(`Committed ${committedCount} file(s) to sync branch`);\n }\n\n // Check how many commits we're ahead of remote\n let ahead = 0;\n try {\n await git('fetch', remote, syncBranch);\n const aheadOutput = await git(\n 'rev-list',\n '--count',\n `${remote}/${syncBranch}..${syncBranch}`,\n );\n ahead = parseInt(aheadOutput, 10) \|\| 0;\n this.output.debug(`Ahead of remote by ${ahead} commit(s)`);\n } catch {\n // Remote branch doesn't exist - count all local commits\n try {\n const countOutput = await git('rev-list', '--count', syncBranch);\n ahead = parseInt(countOutput, 10) \|\| 0;\n this.output.debug(`Remote branch not found, ${ahead} local commit(s) to push`);\n } catch {\n ahead = 0;\n this.output.debug('Could not count local commits');\n }\n }\n\n if (ahead === 0) {\n spinner.stop();\n this.output.success('Already up to date');\n return;\n }\n\n // Use push with retry\n const result = await this.doPushWithRetry(syncBranch, remote);\n spinner.stop();\n\n if (result.success) {\n this.output.success(`Pushed ${ahead} commit(s) to ${remote}/${syncBranch}`);\n } else if (result.conflicts && result.conflicts.length > 0) {\n this.output.warn(\n `Push completed with ${result.conflicts.length} conflict(s) (see attic for details)`,\n );\n } else {\n throw new SyncError(`Failed to push: ${result.error}`);\n }\n } catch (error) {\n spinner.stop();\n if (error instanceof SyncError) throw error;\n throw new SyncError(`Failed to push: ${(error as Error).message}`);\n }\n }\n\n private async doPushWithRetry(syncBranch: string, remote: string): Promise<PushResult> {\n return pushWithRetry(syncBranch, remote, async () => {\n // Merge callback - called when we need to merge remote changes\n const conflicts: ConflictEntry[] = [];\n\n // Get list of issues that need merging\n const localIssues = await listIssues(this.dataSyncDir);\n\n for (const localIssue of localIssues) {\n try {\n // Try to get the remote version (use relative path for git show)\n const remoteContent = await git(\n 'show',\n `${remote}/${syncBranch}:${DATA_SYNC_DIR}/issues/${localIssue.id}.md`,\n );\n\n if (remoteContent) {\n // Parse remote issue and merge\n const remoteIssue = await readIssue(this.dataSyncDir, localIssue.id);\n const result = mergeIssues(null, localIssue, remoteIssue);\n\n // Write merged result\n await writeIssue(this.dataSyncDir, result.merged);\n conflicts.push(...result.conflicts);\n }\n } catch {\n // Issue doesn't exist remotely - no merge needed\n this.output.debug(`Issue ${localIssue.id} not on remote, no merge needed`);\n }\n }\n\n return conflicts;\n });\n }\n\n /\n Show git log --stat output in debug mode.\n * Used to display commits that were synced.\n /\n private async showGitLogDebug(range: string, label: string): Promise<void> {\n try {\n const logOutput = await git('log', '--stat', '--oneline', range);\n if (logOutput.trim()) {\n this.output.debug(`${label}:`);\n for (const line of logOutput.split('\\n')) {\n this.output.debug(` ${line}`);\n }\n }\n } catch {\n // Ignore errors - log is just for debugging\n }\n }\n\n private async fullSync(syncBranch: string, remote: string, _force?: boolean): Promise<void> {\n const spinner = this.output.spinner('Syncing with remote...');\n const summary: SyncSummary = emptySummary();\n const conflicts: ConflictEntry[] = [];\n // Use tbdRoot for consistent path resolution\n const worktreePath = join(this.tbdRoot, WORKTREE_DIR);\n\n try {\n // STEP 1: Commit local changes FIRST (before pulling)\n // This ensures local work is preserved before we incorporate remote changes.\n const committedTallies = await this.commitWorktreeChanges();\n // Add committed changes to sent tallies\n summary.sent.new += committedTallies.new;\n summary.sent.updated += committedTallies.updated;\n summary.sent.deleted += committedTallies.deleted;\n if (hasTallies(committedTallies)) {\n const count = committedTallies.new + committedTallies.updated + committedTallies.deleted;\n this.output.debug(`Committed ${count} file(s) to sync branch`);\n }\n\n // STEP 2: Fetch remote\n await git('fetch', remote, syncBranch);\n\n // Get file-level changes from remote using git diff\n let behindCommits = 0;\n try {\n const behindOutput = await git(\n 'rev-list',\n '--count',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n behindCommits = parseInt(behindOutput, 10) \|\| 0;\n this.output.debug(`Behind remote by ${behindCommits} commit(s)`);\n\n // Get file-level tallies for received changes\n if (behindCommits > 0) {\n try {\n const diffOutput = await git(\n 'diff',\n '--name-status',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n const receivedTallies = parseGitDiff(diffOutput);\n summary.received.new += receivedTallies.new;\n summary.received.updated += receivedTallies.updated;\n summary.received.deleted += receivedTallies.deleted;\n } catch {\n // If we can't get detailed diff, just track commit count\n this.output.debug('Could not get detailed diff for received changes');\n }\n }\n } catch {\n // Branch doesn't exist on remote\n this.output.debug('Remote sync branch does not exist yet');\n }\n\n // STEP 3: If remote has changes, merge them in\n if (behindCommits > 0) {\n // Track HEAD before merge for debug log\n let headBeforeMerge = '';\n try {\n headBeforeMerge = (await git('-C', worktreePath, 'rev-parse', 'HEAD')).trim();\n } catch {\n // Ignore - just won't show debug log\n }\n\n // Merge remote into local using worktree\n // This is a proper git merge that preserves both local and remote changes\n try {\n await git(\n '-C',\n worktreePath,\n 'merge',\n `${remote}/${syncBranch}`,\n '-m',\n 'tbd sync: merge remote changes',\n );\n this.output.debug(`Merged ${behindCommits} commit(s) from remote`);\n\n // Show received commits in debug mode\n if (headBeforeMerge) {\n await this.showGitLogDebug(`${headBeforeMerge}..HEAD`, 'Commits received');\n }\n } catch {\n // Merge conflict - try to resolve at file level\n this.output.info(`Merge conflict, attempting file-level resolution`);\n\n // For each conflicted issue, do field-level merge\n const localIssues = await listIssues(this.dataSyncDir);\n for (const localIssue of localIssues) {\n try {\n const remoteContent = await git(\n 'show',\n `${remote}/${syncBranch}:${DATA_SYNC_DIR}/issues/${localIssue.id}.md`,\n );\n if (remoteContent) {\n const remoteIssue = await readIssue(this.dataSyncDir, localIssue.id);\n const result = mergeIssues(null, localIssue, remoteIssue);\n await writeIssue(this.dataSyncDir, result.merged);\n conflicts.push(...result.conflicts);\n }\n } catch {\n // Issue doesn't exist remotely - keep local version\n this.output.debug(`Issue ${localIssue.id} not on remote, keeping local`);\n }\n }\n\n // Stage resolved files and complete merge\n // Use --no-verify to bypass parent repo hooks (lefthook, husky, etc.)\n await git('-C', worktreePath, 'add', '-A');\n\n try {\n await git(\n '-C',\n worktreePath,\n 'commit',\n '--no-verify',\n '-m',\n 'tbd sync: resolved merge conflicts',\n );\n } catch {\n // May fail if no conflicts needed resolving\n this.output.debug('No merge commit needed (conflicts already resolved)');\n }\n }\n }\n } catch (error) {\n // Remote not available - that's ok for first sync\n this.output.debug(`Fetch failed (may be first sync): ${(error as Error).message}`);\n }\n\n // Check how many commits we're ahead of remote (if any)\n let aheadCommits = 0;\n try {\n const aheadOutput = await git(\n 'rev-list',\n '--count',\n `${remote}/${syncBranch}..${syncBranch}`,\n );\n aheadCommits = parseInt(aheadOutput, 10) \|\| 0;\n this.output.debug(`Ahead of remote by ${aheadCommits} commit(s)`);\n } catch {\n // Remote branch doesn't exist - count all local commits on sync branch\n try {\n const countOutput = await git('rev-list', '--count', syncBranch);\n aheadCommits = parseInt(countOutput, 10) \|\| 0;\n this.output.debug(`Remote branch not found, ${aheadCommits} local commit(s) to push`);\n } catch {\n aheadCommits = 0;\n this.output.debug('Could not count local commits');\n }\n }\n\n // Push if we have commits ahead of remote\n let pushFailed = false;\n let pushError = '';\n if (aheadCommits > 0) {\n this.output.debug(`Pushing ${aheadCommits} commit(s) to remote`);\n const result = await this.doPushWithRetry(syncBranch, remote);\n if (result.conflicts) {\n conflicts.push(...result.conflicts);\n }\n if (!result.success) {\n pushFailed = true;\n pushError = result.error ?? 'Unknown push error';\n this.output.debug(`Push failed: ${pushError}`);\n } else {\n // Show pushed commits in debug mode\n await this.showGitLogDebug(`-${aheadCommits}`, 'Commits sent');\n }\n } else {\n this.output.debug('No commits to push');\n }\n\n summary.conflicts = conflicts.length;\n spinner.stop();\n\n // Report push failure - don't silently swallow it\n if (pushFailed) {\n this.output.data(\n {\n summary,\n conflicts: conflicts.length,\n pushFailed,\n pushError,\n unpushedCommits: aheadCommits,\n },\n () => {\n // Extract meaningful error from git output (look for HTTP errors, permission issues, etc.)\n let displayError = pushError;\n const httpMatch = /HTTP (\\d+)/.exec(pushError);\n const curlMatch = /curl \\d+ (.+?)(?:\\n\|$)/.exec(pushError);\n if (httpMatch) {\n displayError = `HTTP ${httpMatch[1]}${curlMatch ? ` - ${curlMatch[1]}` : ''}`;\n } else {\n // Fall back to first meaningful line (skip \"Command failed: git push...\")\n const lines = pushError.split('\\n').filter((l) => l && !l.startsWith('Command failed'));\n displayError = lines[0] ?? pushError;\n }\n this.output.error(`Push failed: ${displayError}`);\n console.log(` ${aheadCommits} commit(s) not pushed to remote.`);\n console.log(` Run 'tbd sync' to retry or 'tbd sync --status' to check status.`);\n console.log(` To preserve changes locally: tbd save --outbox`);\n },\n );\n return;\n }\n\n this.output.data({ summary, conflicts: conflicts.length }, () => {\n const summaryText = formatSyncSummary(summary);\n if (!summaryText) {\n this.output.success('Already in sync');\n } else {\n this.output.success(`Synced: ${summaryText}`);\n }\n });\n }\n}\n\nexport const syncCommand = new Command('sync')\n .description('Synchronize issues and docs (both by default)')\n .option('--issues', 'Sync only issues (not docs)')\n .option('--docs', 'Sync only docs (not issues)')\n .option('--push', 'Push local issue changes only')\n .option('--pull', 'Pull remote issue changes only')\n .option('--status', 'Show sync status')\n .option('--force', 'Force sync (overwrite conflicts)')\n .option('--fix', 'Attempt to repair unhealthy worktree before syncing')\n .action(async (options, command) => {\n const handler = new SyncHandler(command);\n await handler.run(options);\n });\n","/\n Human-readable formatting utilities for tbd CLI.\n \n Uses sindresorhus libraries for consistent, well-tested formatting:\n * - pretty-bytes: Byte sizes (1337 -> \"1.34 kB\")\n * - pretty-ms: Durations (3600000 -> \"1h\")\n /\n\nimport prettyBytes from 'pretty-bytes';\nimport prettyMs from 'pretty-ms';\n\nimport { CHARS_PER_TOKEN } from './paths.js';\n\n// Re-export for direct use when needed\nexport { prettyBytes, prettyMs };\n\n// =============================================================================\n// Token Estimation\n// =============================================================================\n\n/\n Estimate token count from text content.\n * Uses CHARS_PER_TOKEN (~3.5) for markdown/code content.\n /\nexport function estimateTokens(text: string): number {\n return Math.ceil(text.length / CHARS_PER_TOKEN);\n}\n\n/\n Format token count: \"~1.2k tok\" or \"~450 tok\"\n /\nexport function formatTokens(tokens: number): string {\n if (tokens >= 1000) {\n return `~${(tokens / 1000).toFixed(1)}k tok`;\n }\n return `~${tokens} tok`;\n}\n\n// =============================================================================\n// Size Formatting\n// =============================================================================\n\n/\n Format doc size for list display: \"(1.8 kB, ~450 tok)\"\n /\nexport function formatDocSize(sizeBytes: number, approxTokens: number): string {\n return `(${prettyBytes(sizeBytes)}, ${formatTokens(approxTokens)})`;\n}\n\n// =============================================================================\n// Time Formatting\n// =============================================================================\n\n/\n Format relative time from Date: \"2d ago\", \"3h ago\", \"5m ago\"\n * Uses compact format for concise display.\n /\nexport function formatTimeAgo(date: Date): string {\n const ms = Date.now() - date.getTime();\n if (ms < 0) return 'just now';\n if (ms < 60000) return 'just now'; // Less than 1 minute\n return `${prettyMs(ms, { compact: true })} ago`;\n}\n\n/\n Format relative time from ISO timestamp string.\n * Returns null if timestamp is invalid.\n /\nexport function formatTimestampAgo(timestamp: string \| undefined \| null): string \| null {\n if (!timestamp) return null;\n const date = new Date(timestamp);\n if (isNaN(date.getTime())) return null;\n return formatTimeAgo(date);\n}\n\n/\n Format duration in milliseconds: \"2h 15m\", \"3d 4h\"\n * Uses verbose format for clarity.\n /\nexport function formatDuration(ms: number): string {\n return prettyMs(ms, { verbose: true });\n}\n\n/\n Format duration compactly: \"2h\", \"3d\"\n * Uses compact format for tables and tight spaces.\n /\nexport function formatDurationCompact(ms: number): string {\n return prettyMs(ms, { compact: true });\n}\n","/\n `tbd search` - Search issues.\n \n See: tbd-design.md §4.8 Search Commands\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { parse as parseYaml, stringify as stringifyYaml } from 'yaml';\n\nimport { writeFile } from 'atomically';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { loadDataContext, type TbdDataContext } from '../lib/data-context.js';\nimport { requireInit, NotInitializedError, ValidationError } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport { IssueStatus } from '../../lib/schemas.js';\nimport type { Issue, IssueStatusType, LocalState } from '../../lib/types.js';\nimport { STATE_FILE } from '../../lib/paths.js';\nimport { formatTimestampAgo } from '../../lib/format-utils.js';\nimport { now } from '../../utils/time-utils.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { formatIssueCompact, type IssueForDisplay } from '../lib/issue-format.js';\n\n// Staleness threshold for worktree (5 minutes)\nconst STALE_THRESHOLD_MS = 5 60 * 1000;\n\ninterface SearchOptions {\n status?: string;\n limit?: string;\n noRefresh?: boolean;\n field?: string;\n caseSensitive?: boolean;\n}\n\ninterface SearchResult {\n issue: Issue;\n matchField: string;\n matchText: string;\n}\n\n/*\n Read local state file.\n /\nasync function readState(): Promise<LocalState> {\n try {\n const content = await readFile(STATE_FILE, 'utf-8');\n return parseYaml(content) as LocalState;\n } catch {\n return {};\n }\n}\n\n/\n Update local state file.\n /\nasync function updateState(updates: Partial<LocalState>): Promise<void> {\n const state = await readState();\n const newState = { ...state, ...updates };\n await writeFile(STATE_FILE, stringifyYaml(newState));\n}\n\n/\n Check if worktree is stale and needs refresh.\n /\nasync function isWorktreeStale(): Promise<boolean> {\n const state = await readState();\n if (!state.last_sync_at) {\n return true; // Never synced\n }\n\n const lastSync = new Date(state.last_sync_at).getTime();\n const now = Date.now();\n return now - lastSync > STALE_THRESHOLD_MS;\n}\n\nclass SearchHandler extends BaseCommand {\n async run(query: string, options: SearchOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Check worktree staleness and auto-refresh if needed\n if (!options.noRefresh) {\n const state = await readState();\n const stale = await isWorktreeStale();\n if (stale) {\n const lastSyncAgo = formatTimestampAgo(state.last_sync_at);\n const staleInfo = lastSyncAgo ? ` (last synced ${lastSyncAgo})` : '';\n this.output.info(`Refreshing worktree${staleInfo}...`);\n // Update state to mark as fresh (in a full implementation, would actually sync)\n await updateState({ last_sync_at: now() });\n }\n }\n\n // Load data context and issues\n let issues: Issue[];\n let dataCtx: TbdDataContext;\n try {\n dataCtx = await loadDataContext(tbdRoot);\n issues = await listIssues(dataCtx.dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Parse status filter\n let statusFilter: IssueStatusType \| null = null;\n if (options.status) {\n const result = IssueStatus.safeParse(options.status);\n if (!result.success) {\n throw new ValidationError(`Invalid status: ${options.status}`);\n }\n statusFilter = result.data;\n }\n\n // Search (case-insensitive by default)\n const caseSensitive = options.caseSensitive ?? false;\n const queryForMatch = caseSensitive ? query : query.toLowerCase();\n let results: SearchResult[] = [];\n\n for (const issue of issues) {\n // Apply status filter\n if (statusFilter && issue.status !== statusFilter) continue;\n\n // Determine which fields to search\n const searchFields = options.field\n ? [options.field]\n : ['title', 'description', 'notes', 'labels'];\n\n for (const field of searchFields) {\n const match = this.searchField(issue, field, queryForMatch, caseSensitive);\n if (match) {\n results.push(match);\n break; // Only one match per issue\n }\n }\n }\n\n // Apply limit\n results = applyLimit(results, options.limit);\n\n const { mapping, prefix } = dataCtx;\n const showDebug = this.ctx.debug;\n\n // Format output\n const output = results.map((r) => ({\n id: showDebug\n ? formatDebugId(r.issue.id, mapping, prefix)\n : formatDisplayId(r.issue.id, mapping, prefix),\n priority: r.issue.priority,\n status: r.issue.status,\n kind: r.issue.kind,\n title: r.issue.title,\n matchField: r.matchField,\n match: r.matchText,\n }));\n\n this.output.data(output, () => {\n if (output.length === 0) {\n this.output.info(`No issues matching \"${query}\"`);\n return;\n }\n\n const colors = this.output.getColors();\n console.log(`Found ${output.length} result${output.length === 1 ? '' : 's'}:\\n`);\n for (const result of output) {\n console.log(formatIssueCompact(result as IssueForDisplay, colors));\n console.log(` ${colors.dim(`[${result.matchField}]`)} ${result.match}`);\n console.log('');\n }\n });\n }\n\n private searchField(\n issue: Issue,\n field: string,\n query: string,\n caseSensitive: boolean,\n ): SearchResult \| null {\n switch (field) {\n case 'title': {\n const text = caseSensitive ? issue.title : issue.title.toLowerCase();\n if (text.includes(query)) {\n return { issue, matchField: 'title', matchText: issue.title };\n }\n break;\n }\n case 'description': {\n if (issue.description) {\n const text = caseSensitive ? issue.description : issue.description.toLowerCase();\n if (text.includes(query)) {\n const snippet = this.extractSnippet(issue.description, query, caseSensitive);\n return { issue, matchField: 'description', matchText: snippet };\n }\n }\n break;\n }\n case 'notes': {\n if (issue.notes) {\n const text = caseSensitive ? issue.notes : issue.notes.toLowerCase();\n if (text.includes(query)) {\n const snippet = this.extractSnippet(issue.notes, query, caseSensitive);\n return { issue, matchField: 'notes', matchText: snippet };\n }\n }\n break;\n }\n case 'labels': {\n for (const label of issue.labels) {\n const text = caseSensitive ? label : label.toLowerCase();\n if (text.includes(query)) {\n return { issue, matchField: 'labels', matchText: `label: ${label}` };\n }\n }\n break;\n }\n }\n return null;\n }\n\n private extractSnippet(text: string, query: string, caseSensitive: boolean): string {\n const searchText = caseSensitive ? text : text.toLowerCase();\n const index = searchText.indexOf(query);\n if (index === -1) return text.slice(0, 60);\n\n // Extract snippet around match\n const start = Math.max(0, index - 20);\n const end = Math.min(text.length, index + query.length + 40);\n let snippet = text.slice(start, end);\n\n if (start > 0) snippet = '...' + snippet;\n if (end < text.length) snippet = snippet + '...';\n\n return snippet.replace(/\\n/g, ' ');\n }\n}\n\nexport const searchCommand = new Command('search')\n .description('Search issues by text')\n .argument('<query>', 'Search query')\n .option('--status <status>', 'Filter by status')\n .option('--field <field>', 'Search specific field (title, description, notes, labels)')\n .option('--limit <n>', 'Limit results')\n .option('--no-refresh', 'Skip worktree refresh')\n .option('--case-sensitive', 'Case-sensitive search')\n .action(async (query, options, command) => {\n const handler = new SearchHandler(command);\n await handler.run(query, options);\n });\n","/\n Shared section rendering functions for CLI output.\n \n These functions ensure identical output formatting across commands that\n * share sections (status, doctor, stats). When doctor subsumes status,\n * it calls the same rendering functions to guarantee consistency.\n \n See: plan-2026-01-29-terminal-design-system.md\n /\n\nimport type { createColors } from './output.js';\nimport { ICONS, formatHeading } from './output.js';\nimport { MIN_GIT_VERSION } from '../../file/git.js';\n\n/\n Repository section data for rendering.\n /\nexport interface RepositorySectionData {\n version: string;\n workingDirectory: string;\n initialized: boolean;\n gitRepository: boolean;\n gitBranch: string \| null;\n gitVersion: string \| null;\n gitVersionSupported: boolean;\n}\n\n/\n Config section data for rendering.\n /\nexport interface ConfigSectionData {\n syncBranch: string \| null;\n remote: string \| null;\n displayPrefix: string \| null;\n}\n\n/\n Integration check result for rendering.\n /\nexport interface IntegrationCheck {\n name: string;\n installed: boolean;\n path: string;\n}\n\n/\n Statistics section data for rendering.\n /\nexport interface StatisticsSectionData {\n ready: number;\n inProgress: number;\n blocked: number;\n open: number;\n total: number;\n}\n\n/\n Render the REPOSITORY section.\n \n Used by: status, doctor\n \n Shows:\n * - tbd version\n * - Repository path\n * - Initialization status\n * - Git repository status and branch\n * - Git version (with support warning if needed)\n \n @param data - Repository data to render\n * @param colors - Color functions\n * @param options - Rendering options\n /\nexport function renderRepositorySection(\n data: RepositorySectionData,\n colors: ReturnType<typeof createColors>,\n options?: { showHeading?: boolean },\n): void {\n // Show heading if requested (doctor uses heading, status doesn't)\n if (options?.showHeading) {\n console.log(colors.bold(formatHeading('Repository')));\n }\n\n // Version line\n console.log(`${colors.bold('tbd')} v${data.version}`);\n\n // Repository path\n console.log(`Repository: ${data.workingDirectory}`);\n\n // Initialization status\n if (data.initialized) {\n console.log(` ${colors.success(ICONS.SUCCESS)} Initialized (.tbd/)`);\n } else {\n console.log(` ${colors.error(ICONS.ERROR)} Not initialized`);\n }\n\n // Git repository status\n if (data.gitRepository) {\n const branchInfo = data.gitBranch ? ` (${data.gitBranch})` : '';\n console.log(` ${colors.success(ICONS.SUCCESS)} Git repository${branchInfo}`);\n\n // Git version\n if (data.gitVersion) {\n const versionIcon = data.gitVersionSupported\n ? colors.success(ICONS.SUCCESS)\n : colors.warn(ICONS.WARN);\n const versionNote = data.gitVersionSupported\n ? ''\n : ` ${colors.dim(`(requires ${MIN_GIT_VERSION}+)`)}`;\n console.log(` ${versionIcon} Git ${data.gitVersion}${versionNote}`);\n }\n } else {\n console.log(` ${colors.error(ICONS.ERROR)} Git repository not found`);\n }\n}\n\n/\n Render the CONFIG section (sync branch, remote, prefix).\n \n Used by: status, doctor\n \n Shows key-value pairs with dim keys.\n \n @param data - Config data to render\n * @param colors - Color functions\n /\nexport function renderConfigSection(\n data: ConfigSectionData,\n colors: ReturnType<typeof createColors>,\n): void {\n if (!data.syncBranch && !data.remote && !data.displayPrefix) {\n return;\n }\n\n console.log('');\n\n if (data.syncBranch) {\n console.log(`${colors.dim('Sync branch:')} ${data.syncBranch}`);\n }\n if (data.remote) {\n console.log(`${colors.dim('Remote:')} ${data.remote}`);\n }\n if (data.displayPrefix) {\n console.log(`${colors.dim('ID prefix:')} ${data.displayPrefix}-`);\n }\n}\n\n/\n Render the INTEGRATIONS section.\n \n Used by: status, doctor\n \n Shows diagnostic lines for each integration check.\n \n @param checks - Array of integration checks\n * @param colors - Color functions\n * @returns Whether any integrations are missing (for follow-up suggestions)\n /\nexport function renderIntegrationsSection(\n checks: IntegrationCheck[],\n colors: ReturnType<typeof createColors>,\n): boolean {\n console.log('');\n console.log(colors.bold(formatHeading('Integrations')));\n\n let hasMissing = false;\n\n for (const check of checks) {\n const icon = check.installed ? colors.success(ICONS.SUCCESS) : colors.dim(ICONS.ERROR);\n const pathDim = colors.dim(`(${check.path})`);\n console.log(` ${icon} ${check.name} ${pathDim}`);\n\n if (!check.installed) {\n hasMissing = true;\n }\n }\n\n return hasMissing;\n}\n\n/\n Render the STATISTICS section.\n \n Used by: stats, doctor\n \n Shows aligned statistic block with labels and values.\n \n @param data - Statistics data to render\n * @param colors - Color functions\n * @param options - Rendering options\n /\nexport function renderStatisticsSection(\n data: StatisticsSectionData,\n colors: ReturnType<typeof createColors>,\n options?: { showHeading?: boolean },\n): void {\n if (options?.showHeading !== false) {\n console.log('');\n console.log(colors.bold(formatHeading('Statistics')));\n }\n\n // Calculate padding for alignment\n const labels = ['Ready', 'In progress', 'Blocked', 'Open', 'Total'];\n const maxLabelLen = Math.max(...labels.map((l) => l.length));\n\n const formatLine = (label: string, value: number): string => {\n const padding = ' '.repeat(maxLabelLen - label.length + 1);\n return ` ${label}:${padding}${value}`;\n };\n\n console.log(formatLine('Ready', data.ready));\n console.log(formatLine('In progress', data.inProgress));\n console.log(formatLine('Blocked', data.blocked));\n console.log(formatLine('Open', data.open));\n console.log(formatLine('Total', data.total));\n}\n\n/\n Render a warning block about beads coexistence.\n \n Used by: status\n \n @param colors - Color functions\n /\nexport function renderBeadsWarning(colors: ReturnType<typeof createColors>): void {\n console.log('');\n console.log(`${colors.warn(ICONS.WARN)} Beads directory detected alongside tbd`);\n console.log('This may cause confusion for AI agents.');\n console.log(`Run ${colors.bold('tbd setup beads --disable')} for migration options`);\n}\n\n/\n Render worktree status line.\n \n Used by: status\n \n @param path - Worktree path\n * @param healthy - Whether worktree is healthy\n * @param colors - Color functions\n /\nexport function renderWorktreeStatus(\n path: string,\n healthy: boolean,\n colors: ReturnType<typeof createColors>,\n): void {\n console.log('');\n if (healthy) {\n console.log(`${colors.dim('Worktree:')} ${path} (healthy)`);\n } else {\n console.log(`${colors.warn('Worktree:')} ${path} (${colors.error('unhealthy')})`);\n console.log(' Run: tbd doctor --fix');\n }\n}\n\n/\n Render footer with command suggestions.\n \n Used by: status, doctor, stats\n \n @param suggestions - Array of {command, description} pairs\n * @param colors - Color functions\n /\nexport function renderFooter(\n suggestions: { command: string; description: string }[],\n colors: ReturnType<typeof createColors>,\n): void {\n console.log('');\n\n if (suggestions.length === 0) {\n return;\n }\n\n const parts = suggestions.map((s) => `${colors.bold(`'${s.command}'`)} for ${s.description}`);\n\n if (parts.length === 1) {\n console.log(`Use ${parts[0]}.`);\n } else {\n console.log(`Use ${parts.join(', ')}.`);\n }\n}\n","/\n Centralized path constants and utilities for coding agent integrations.\n \n IMPORTANT: All tbd integration files (hooks, settings, skills) are installed\n * to PROJECT-LOCAL directories (.claude/, AGENTS.md) ONLY. We do NOT install to\n * global/user directories (~/.claude/).\n \n This file defines all path constants in one place to:\n * 1. Ensure consistency across the codebase\n * 2. Make the project-local policy explicit and auditable\n * 3. Simplify future changes to path conventions\n /\n\nimport { join } from 'node:path';\nimport { homedir } from 'node:os';\n\n// =============================================================================\n// Claude Code Integration Paths (project-local)\n// =============================================================================\n\n/\n Relative path to Claude Code settings file from project root.\n * This is where hooks are configured.\n /\nexport const CLAUDE_SETTINGS_REL = '.claude/settings.json';\n\n/\n Relative path to Claude Code directory from project root.\n /\nexport const CLAUDE_DIR_REL = '.claude';\n\n/\n Relative path to Claude Code scripts directory from project root.\n /\nexport const CLAUDE_SCRIPTS_DIR_REL = '.claude/scripts';\n\n/\n Relative path to Claude Code hooks directory from project root.\n /\nexport const CLAUDE_HOOKS_DIR_REL = '.claude/hooks';\n\n/\n Relative path to tbd skill file from project root.\n /\nexport const CLAUDE_SKILL_REL = '.claude/skills/tbd/SKILL.md';\n\n/\n Relative path to tbd session script from project root.\n /\nexport const TBD_SESSION_SCRIPT_REL = '.claude/scripts/tbd-session.sh';\n\n/\n Relative path to tbd closing reminder hook script from project root.\n /\nexport const TBD_CLOSING_REMINDER_REL = '.claude/hooks/tbd-closing-reminder.sh';\n\n/\n Relative path to gh CLI ensure script from project root.\n /\nexport const GH_CLI_SCRIPT_REL = '.claude/scripts/ensure-gh-cli.sh';\n\n// =============================================================================\n// Codex / AGENTS.md Integration Paths (project-local)\n// =============================================================================\n\n/\n Relative path to AGENTS.md file from project root.\n * Used by Codex, Factory.ai, Cursor (v1.6+), and other compatible tools.\n /\nexport const AGENTS_MD_REL = 'AGENTS.md';\n\n// =============================================================================\n// Global Paths (for detection only - NOT for installation)\n// =============================================================================\n\n/\n Global Claude Code directory in user's home.\n * Used ONLY for detecting if Claude Code is installed (for agent detection).\n * All installations are project-local.\n /\nexport const GLOBAL_CLAUDE_DIR = join(homedir(), '.claude');\n\n// =============================================================================\n// Path Resolution Utilities\n// =============================================================================\n\n/\n Get project-local Claude Code paths.\n \n @param projectRoot - The project root directory (containing .tbd/)\n * @returns Object with all Claude Code paths resolved to absolute paths\n /\nexport function getClaudePaths(projectRoot: string) {\n return {\n /* .claude/ directory /\n dir: join(projectRoot, CLAUDE_DIR_REL),\n /* .claude/settings.json /\n settings: join(projectRoot, CLAUDE_SETTINGS_REL),\n /* .claude/scripts/ directory /\n scriptsDir: join(projectRoot, CLAUDE_SCRIPTS_DIR_REL),\n /* .claude/hooks/ directory /\n hooksDir: join(projectRoot, CLAUDE_HOOKS_DIR_REL),\n /* .claude/skills/tbd/SKILL.md /\n skill: join(projectRoot, CLAUDE_SKILL_REL),\n /* .claude/scripts/tbd-session.sh /\n sessionScript: join(projectRoot, TBD_SESSION_SCRIPT_REL),\n /* .claude/hooks/tbd-closing-reminder.sh /\n closingReminder: join(projectRoot, TBD_CLOSING_REMINDER_REL),\n /* .claude/scripts/ensure-gh-cli.sh /\n ghCliScript: join(projectRoot, GH_CLI_SCRIPT_REL),\n };\n}\n\n/\n Get project-local Codex/AGENTS.md path.\n \n @param projectRoot - The project root directory\n * @returns Absolute path to AGENTS.md\n /\nexport function getAgentsMdPath(projectRoot: string): string {\n return join(projectRoot, AGENTS_MD_REL);\n}\n\n// =============================================================================\n// Display Paths (for user-facing output)\n// =============================================================================\n\n/\n Display path for Claude Code settings in status/doctor output.\n /\nexport const CLAUDE_SETTINGS_DISPLAY = './.claude/settings.json';\n\n/\n Display path for AGENTS.md in status/doctor output.\n /\nexport const AGENTS_MD_DISPLAY = './AGENTS.md';\n","/\n Workspace operations for sync failure recovery, backups, and bulk editing.\n \n Workspaces are directories under .tbd/workspaces/ that store issue data.\n * They mirror the data-sync directory structure:\n * .tbd/workspaces/{name}/\n * issues/\n * mappings/\n * attic/\n \n See: plan-2026-01-30-workspace-sync-alt.md\n /\n\nimport { mkdir, readdir, rm, stat } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport { stringify as stringifyYaml } from 'yaml';\nimport { writeFile } from 'atomically';\n\nimport { listIssues, writeIssue, readIssue } from './storage.js';\nimport { parseIssue } from './parser.js';\nimport { mergeIssues, deepEqual, git, type ConflictEntry } from './git.js';\nimport { loadIdMapping, saveIdMapping, addIdMapping } from './id-mapping.js';\nimport {\n WORKSPACES_DIR,\n getWorkspaceDir,\n isValidWorkspaceName,\n DATA_SYNC_DIR,\n} from '../lib/paths.js';\nimport { extractUlidFromInternalId } from '../lib/ids.js';\nimport { now } from '../utils/time-utils.js';\nimport type { AtticEntry, Issue } from '../lib/types.js';\n\n/\n Options for saveToWorkspace.\n * One of workspace, dir, or outbox must be specified.\n /\nexport interface SaveOptions {\n /* Named workspace under .tbd/workspaces/ /\n workspace?: string;\n /* Arbitrary directory path /\n dir?: string;\n /* Shortcut for --workspace=outbox --updates-only /\n outbox?: boolean;\n /* Only save issues modified since last sync /\n updatesOnly?: boolean;\n}\n\n/\n Result from saveToWorkspace operation.\n /\nexport interface SaveResult {\n /* Number of issues saved /\n saved: number;\n /* Number of conflicts (went to attic) /\n conflicts: number;\n /* Target directory where issues were saved /\n targetDir: string;\n /* Total issues in source before filtering (for informational messages) /\n totalSource: number;\n /* Whether filtering was applied (updatesOnly or outbox) /\n filtered: boolean;\n}\n\n/\n Options for importFromWorkspace.\n * One of workspace, dir, or outbox must be specified.\n /\nexport interface ImportOptions {\n /* Named workspace under .tbd/workspaces/ /\n workspace?: string;\n /* Arbitrary directory path /\n dir?: string;\n /* Shortcut for --workspace=outbox --clear-on-success /\n outbox?: boolean;\n /* Delete workspace after successful import /\n clearOnSuccess?: boolean;\n}\n\n/\n Result from importFromWorkspace operation.\n /\nexport interface ImportResult {\n /* Number of issues imported /\n imported: number;\n /* Number of conflicts (went to attic) /\n conflicts: number;\n /* Source directory where issues were imported from /\n sourceDir: string;\n /* Whether the source was deleted after import /\n cleared: boolean;\n}\n\n/\n Compare local issues with remote issues and return only those that are new or modified.\n \n An issue is considered \"updated\" if:\n * - It doesn't exist in the remote (new issue)\n * - Its content differs from the remote version (modified issue)\n \n @param localIssues - Issues from the local worktree\n * @param remoteIssues - Issues from the remote tbd-sync branch\n * @returns Issues that are new or modified compared to remote\n /\nexport function getUpdatedIssues(localIssues: Issue[], remoteIssues: Issue[]): Issue[] {\n // Build a map of remote issues by ID for quick lookup\n const remoteById = new Map<string, Issue>();\n for (const issue of remoteIssues) {\n remoteById.set(issue.id, issue);\n }\n\n // Filter local issues to only those that are new or different\n return localIssues.filter((local) => {\n const remote = remoteById.get(local.id);\n\n // New issue - not in remote\n if (!remote) {\n return true;\n }\n\n // Modified issue - content differs from remote\n return !deepEqual(local, remote);\n });\n}\n\n/\n Ensure a directory exists.\n /\nasync function ensureDir(dir: string): Promise<void> {\n await mkdir(dir, { recursive: true });\n}\n\n/\n Read issues from a git ref (e.g., origin/tbd-sync).\n \n @param baseDir - The base directory of the git repo\n * @param remote - The remote name (e.g., 'origin')\n * @param branch - The branch name (e.g., 'tbd-sync')\n * @returns Array of issues from the remote ref\n /\nasync function readRemoteIssues(baseDir: string, remote: string, branch: string): Promise<Issue[]> {\n const ref = `${remote}/${branch}`;\n const issuesPath = `${DATA_SYNC_DIR}/issues`;\n\n // List all issue files from the remote ref\n let fileList: string;\n try {\n fileList = await git('-C', baseDir, 'ls-tree', '-r', '--name-only', ref, issuesPath);\n } catch {\n // Remote branch doesn't exist or has no issues\n return [];\n }\n\n const issueFiles = fileList\n .trim()\n .split('\\n')\n .filter((f) => f.endsWith('.md'));\n const issues: Issue[] = [];\n\n for (const filepath of issueFiles) {\n try {\n // Read file content from the remote ref\n const content = await git('-C', baseDir, 'show', `${ref}:${filepath}`);\n const issue = parseIssue(content);\n issues.push(issue);\n } catch {\n // Skip files that can't be parsed\n }\n }\n\n return issues;\n}\n\n/\n Convert ConflictEntry to AtticEntry format and save to workspace attic.\n /\nasync function saveConflictToAttic(\n atticDir: string,\n conflict: ConflictEntry,\n winnerSource: 'local' \| 'remote',\n): Promise<void> {\n const timestamp = now();\n\n // Convert lost_value to string - handle objects, primitives, and nullish\n const lostValueStr =\n conflict.lost_value == null\n ? ''\n : typeof conflict.lost_value === 'object'\n ? JSON.stringify(conflict.lost_value)\n : JSON.stringify(conflict.lost_value);\n\n const entry: AtticEntry = {\n entity_id: conflict.issue_id,\n timestamp,\n field: conflict.field,\n lost_value: lostValueStr,\n winner_source: winnerSource,\n loser_source: winnerSource === 'local' ? 'remote' : 'local',\n context: {\n local_version: conflict.local_version,\n remote_version: conflict.remote_version,\n local_updated_at: timestamp,\n remote_updated_at: timestamp,\n },\n };\n\n // Create filename: {entity_id}_{timestamp}_{field}.yml\n const safeTimestamp = timestamp.replace(/:/g, '-');\n const filename = `${conflict.issue_id}_${safeTimestamp}_${conflict.field}.yml`;\n const filepath = join(atticDir, filename);\n\n const content = stringifyYaml(entry, { sortMapEntries: true });\n await writeFile(filepath, content);\n}\n\n/\n Get the target/source directory for workspace operations.\n /\nfunction resolveWorkspaceDir(\n tbdRoot: string,\n options: { workspace?: string; dir?: string; outbox?: boolean },\n): string {\n if (options.dir) {\n return options.dir;\n }\n\n const workspaceName = options.outbox ? 'outbox' : options.workspace;\n if (!workspaceName) {\n throw new Error('One of --workspace, --dir, or --outbox is required');\n }\n\n if (!isValidWorkspaceName(workspaceName)) {\n throw new Error(`Invalid workspace name: ${workspaceName}`);\n }\n\n return join(tbdRoot, getWorkspaceDir(workspaceName));\n}\n\n/\n Get the target directory for save operation.\n * @deprecated Use resolveWorkspaceDir instead\n /\nfunction getTargetDir(tbdRoot: string, options: SaveOptions): string {\n return resolveWorkspaceDir(tbdRoot, options);\n}\n\n/\n Save issues from data-sync directory to a workspace or directory.\n \n Uses mergeIssues() for proper conflict detection when an issue exists\n * in both source (worktree) and target (workspace). Conflicts are saved\n * to the workspace's attic.\n \n @param tbdRoot - The root directory of the tbd project\n * @param dataSyncDir - The data-sync directory containing source issues\n * @param options - Save options (workspace name, directory, or outbox)\n * @returns Save result with counts\n /\nexport async function saveToWorkspace(\n tbdRoot: string,\n dataSyncDir: string,\n options: SaveOptions,\n): Promise<SaveResult> {\n const targetDir = getTargetDir(tbdRoot, options);\n\n // Create target directory structure\n const atticDir = join(targetDir, 'attic');\n\n await ensureDir(join(targetDir, 'issues'));\n await ensureDir(join(targetDir, 'mappings'));\n await ensureDir(atticDir);\n\n // List all issues in source (worktree)\n const allSourceIssues = await listIssues(dataSyncDir);\n const totalSource = allSourceIssues.length;\n let sourceIssues = allSourceIssues;\n\n // Filter to only updated issues if requested\n const isUpdatesOnly = options.updatesOnly ?? options.outbox;\n if (isUpdatesOnly) {\n try {\n // Fetch and compare with remote tbd-sync\n await git('-C', tbdRoot, 'fetch', 'origin', 'tbd-sync');\n const remoteIssues = await readRemoteIssues(tbdRoot, 'origin', 'tbd-sync');\n sourceIssues = getUpdatedIssues(allSourceIssues, remoteIssues);\n } catch {\n // If fetch fails (offline, remote doesn't exist, etc.), save all issues\n // This is the fallback behavior mentioned in the spec\n }\n }\n\n let saved = 0;\n let conflicts = 0;\n\n // Save each issue to target, merging if needed\n for (const sourceIssue of sourceIssues) {\n // Check if issue already exists in workspace\n let targetIssue = null;\n try {\n targetIssue = await readIssue(targetDir, sourceIssue.id);\n } catch {\n // Issue doesn't exist in target - will be created\n }\n\n if (targetIssue) {\n // Issue exists in both - merge\n // Use null base since we don't track common ancestor\n // mergeIssues uses created_at as tiebreaker, so put newer version as \"local\" to win\n const sourceTime = new Date(sourceIssue.updated_at).getTime();\n const targetTime = new Date(targetIssue.updated_at).getTime();\n\n let result;\n let winnerSource: 'local' \| 'remote';\n if (sourceTime >= targetTime) {\n // Source (worktree) is newer - put as local so it wins\n result = mergeIssues(null, sourceIssue, targetIssue);\n winnerSource = 'local';\n } else {\n // Target (workspace) is newer - put as local so it wins\n result = mergeIssues(null, targetIssue, sourceIssue);\n winnerSource = 'remote';\n }\n\n // Save merged issue\n await writeIssue(targetDir, result.merged);\n saved++;\n\n // Save any conflicts to workspace attic\n for (const conflict of result.conflicts) {\n await saveConflictToAttic(atticDir, conflict, winnerSource);\n conflicts++;\n }\n } else {\n // New issue - just save\n await writeIssue(targetDir, sourceIssue);\n saved++;\n }\n }\n\n // Copy ID mappings from source to target (only for saved issues)\n // Build set of saved issue ULIDs (without prefix) to filter mappings\n const savedIssueUlids = new Set(sourceIssues.map((issue) => extractUlidFromInternalId(issue.id)));\n\n const sourceMapping = await loadIdMapping(dataSyncDir);\n const targetMapping = await loadIdMapping(targetDir);\n\n // Merge: add source mappings to target (only for saved issues, don't overwrite existing)\n for (const [shortId, ulid] of sourceMapping.shortToUlid) {\n // Only copy mapping if the ULID corresponds to a saved issue\n if (savedIssueUlids.has(ulid) && !targetMapping.shortToUlid.has(shortId)) {\n addIdMapping(targetMapping, ulid, shortId);\n }\n }\n await saveIdMapping(targetDir, targetMapping);\n\n return {\n saved,\n conflicts,\n targetDir,\n totalSource,\n filtered: isUpdatesOnly ?? false,\n };\n}\n\n/\n Import issues from a workspace or directory to the data-sync directory.\n \n Uses mergeIssues() for proper conflict detection when an issue exists\n * in both source (workspace) and target (worktree). Conflicts are saved\n * to the worktree's attic.\n \n @param tbdRoot - The root directory of the tbd project\n * @param dataSyncDir - The data-sync directory to import into\n * @param options - Import options (workspace name, directory, or outbox)\n * @returns Import result with counts\n /\nexport async function importFromWorkspace(\n tbdRoot: string,\n dataSyncDir: string,\n options: ImportOptions,\n): Promise<ImportResult> {\n const sourceDir = resolveWorkspaceDir(tbdRoot, options);\n\n // Determine if we should clear on success\n // --outbox implies --clear-on-success\n const shouldClear = options.clearOnSuccess ?? options.outbox ?? false;\n\n // Create attic directory in target (worktree)\n const atticDir = join(dataSyncDir, 'attic');\n await ensureDir(atticDir);\n\n // List all issues in source workspace\n const sourceIssues = await listIssues(sourceDir);\n\n let imported = 0;\n let conflicts = 0;\n\n // Import each issue to data-sync, merging if needed\n for (const sourceIssue of sourceIssues) {\n // Check if issue already exists in worktree\n let targetIssue = null;\n try {\n targetIssue = await readIssue(dataSyncDir, sourceIssue.id);\n } catch {\n // Issue doesn't exist in target - will be created\n }\n\n if (targetIssue) {\n // Issue exists in both - merge\n // Use null base since we don't track common ancestor\n // mergeIssues uses created_at as tiebreaker, so put newer version as \"local\" to win\n const sourceTime = new Date(sourceIssue.updated_at).getTime();\n const targetTime = new Date(targetIssue.updated_at).getTime();\n\n let result;\n let winnerSource: 'local' \| 'remote';\n if (sourceTime >= targetTime) {\n // Source (workspace) is newer - put as local so it wins\n result = mergeIssues(null, sourceIssue, targetIssue);\n winnerSource = 'local';\n } else {\n // Target (worktree) is newer - put as local so it wins\n result = mergeIssues(null, targetIssue, sourceIssue);\n winnerSource = 'remote';\n }\n\n // Save merged issue\n await writeIssue(dataSyncDir, result.merged);\n imported++;\n\n // Save any conflicts to worktree attic\n for (const conflict of result.conflicts) {\n await saveConflictToAttic(atticDir, conflict, winnerSource);\n conflicts++;\n }\n } else {\n // New issue - just save\n await writeIssue(dataSyncDir, sourceIssue);\n imported++;\n }\n }\n\n // Merge ID mappings from source (workspace) to target (worktree) - union operation\n const sourceMapping = await loadIdMapping(sourceDir);\n const targetMapping = await loadIdMapping(dataSyncDir);\n\n // Merge: add source mappings to target (don't overwrite existing)\n for (const [shortId, ulid] of sourceMapping.shortToUlid) {\n if (!targetMapping.shortToUlid.has(shortId)) {\n addIdMapping(targetMapping, ulid, shortId);\n }\n }\n await saveIdMapping(dataSyncDir, targetMapping);\n\n // Clear source workspace if requested\n let cleared = false;\n if (shouldClear && imported > 0) {\n const workspaceName = options.outbox ? 'outbox' : options.workspace;\n if (workspaceName) {\n await deleteWorkspace(tbdRoot, workspaceName);\n cleared = true;\n }\n }\n\n return {\n imported,\n conflicts,\n sourceDir,\n cleared,\n };\n}\n\n/\n Issue counts by status for a workspace.\n /\nexport interface WorkspaceIssueCounts {\n open: number;\n in_progress: number;\n closed: number;\n total: number;\n}\n\n/\n Information about a workspace including issue counts.\n /\nexport interface WorkspaceInfo {\n name: string;\n counts: WorkspaceIssueCounts;\n}\n\n/\n List all workspaces in .tbd/workspaces/.\n \n @param tbdRoot - The root directory of the tbd project\n * @returns Array of workspace names\n /\nexport async function listWorkspaces(tbdRoot: string): Promise<string[]> {\n const workspacesDir = join(tbdRoot, WORKSPACES_DIR);\n\n let entries: string[];\n try {\n entries = await readdir(workspacesDir);\n } catch {\n // Directory doesn't exist\n return [];\n }\n\n // Filter to directories only\n const workspaces: string[] = [];\n for (const entry of entries) {\n try {\n const entryPath = join(workspacesDir, entry);\n const entryStat = await stat(entryPath);\n if (entryStat.isDirectory()) {\n workspaces.push(entry);\n }\n } catch {\n // Skip entries we can't stat\n }\n }\n\n return workspaces;\n}\n\n/\n List all workspaces with issue counts by status.\n \n @param tbdRoot - The root directory of the tbd project\n * @returns Array of workspace info with names and counts\n /\nexport async function listWorkspacesWithCounts(tbdRoot: string): Promise<WorkspaceInfo[]> {\n const workspaceNames = await listWorkspaces(tbdRoot);\n const result: WorkspaceInfo[] = [];\n\n for (const name of workspaceNames) {\n const workspaceDir = join(tbdRoot, getWorkspaceDir(name));\n let issues: Issue[] = [];\n\n try {\n issues = await listIssues(workspaceDir);\n } catch {\n // No issues or can't read - counts will be 0\n }\n\n // Count by status\n const counts: WorkspaceIssueCounts = {\n open: 0,\n in_progress: 0,\n closed: 0,\n total: issues.length,\n };\n\n for (const issue of issues) {\n if (issue.status === 'open' \|\| issue.status === 'blocked' \|\| issue.status === 'deferred') {\n counts.open++;\n } else if (issue.status === 'in_progress') {\n counts.in_progress++;\n } else if (issue.status === 'closed') {\n counts.closed++;\n }\n }\n\n result.push({ name, counts });\n }\n\n return result;\n}\n\n/\n Delete a workspace.\n \n @param tbdRoot - The root directory of the tbd project\n * @param name - Workspace name\n /\nexport async function deleteWorkspace(tbdRoot: string, name: string): Promise<void> {\n const workspaceDir = join(tbdRoot, getWorkspaceDir(name));\n\n try {\n await rm(workspaceDir, { recursive: true, force: true });\n } catch {\n // Ignore errors if workspace doesn't exist\n }\n}\n\n/\n Check if a workspace exists.\n \n @param tbdRoot - The root directory of the tbd project\n * @param name - Workspace name\n * @returns true if the workspace directory exists\n /\nexport async function workspaceExists(tbdRoot: string, name: string): Promise<boolean> {\n const workspaceDir = join(tbdRoot, getWorkspaceDir(name));\n\n try {\n const s = await stat(workspaceDir);\n return s.isDirectory();\n } catch {\n return false;\n }\n}\n","/\n `tbd status` - Show repository status and orientation.\n \n This is the \"orientation\" command—like `git status`, it works regardless of\n * initialization state and helps users understand where they are.\n \n Unlike Beads where `bd status` is just an alias for `bd stats`, `tbd status`\n * is a distinct command that provides system orientation, not issue statistics.\n \n See: tbd-design.md §4.9 Status\n /\n\nimport { Command } from 'commander';\nimport { access, readFile } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nimport { VERSION } from '../lib/version.js';\nimport { BaseCommand } from '../lib/base-command.js';\nimport { ICONS } from '../lib/output.js';\nimport {\n renderRepositorySection,\n renderConfigSection,\n renderIntegrationsSection,\n renderBeadsWarning,\n renderWorktreeStatus,\n renderFooter,\n type IntegrationCheck,\n} from '../lib/sections.js';\nimport { readConfig, findTbdRoot } from '../../file/config.js';\nimport { WORKTREE_DIR } from '../../lib/paths.js';\nimport {\n getClaudePaths,\n getAgentsMdPath,\n CLAUDE_SETTINGS_DISPLAY,\n AGENTS_MD_DISPLAY,\n} from '../../lib/integration-paths.js';\nimport {\n git,\n getCurrentBranch,\n checkWorktreeHealth,\n checkGitVersion,\n findGitRoot,\n MIN_GIT_VERSION,\n} from '../../file/git.js';\nimport { listWorkspaces } from '../../file/workspace.js';\n\ninterface StatusData {\n initialized: boolean;\n tbd_version: string;\n working_directory: string;\n\n // Git info (always available)\n git_repository: boolean;\n git_branch: string \| null;\n git_version: string \| null;\n git_version_supported: boolean;\n\n // Beads detection (pre-init only)\n beads_detected: boolean;\n beads_issue_count: number \| null;\n\n // Post-init only\n sync_branch: string \| null;\n remote: string \| null;\n display_prefix: string \| null;\n worktree_path: string \| null;\n worktree_healthy: boolean \| null;\n workspaces: string[];\n\n // Integrations\n integrations: {\n claude_code: boolean;\n claude_code_path: string;\n codex: boolean;\n codex_path: string;\n };\n}\n\nclass StatusHandler extends BaseCommand {\n async run(): Promise<void> {\n const cwd = process.cwd();\n\n // Find tbd root (may be in parent directory)\n const tbdRoot = await findTbdRoot(cwd);\n\n // Find git root for checking integrations (.claude/, .beads/ are at git root)\n const gitRoot = await findGitRoot(cwd);\n\n // Use tbdRoot if available, otherwise gitRoot, otherwise cwd\n // .tbd/, .claude/, .beads/ are all at the project root (adjacent to .git/)\n const projectRoot = tbdRoot ?? gitRoot ?? cwd;\n\n const statusData: StatusData = {\n initialized: tbdRoot !== null,\n tbd_version: VERSION,\n working_directory: cwd,\n git_repository: false,\n git_branch: null,\n git_version: null,\n git_version_supported: false,\n beads_detected: false,\n beads_issue_count: null,\n sync_branch: null,\n remote: null,\n display_prefix: null,\n worktree_path: null,\n worktree_healthy: null,\n workspaces: [],\n integrations: {\n claude_code: false,\n claude_code_path: CLAUDE_SETTINGS_DISPLAY,\n codex: false,\n codex_path: AGENTS_MD_DISPLAY,\n },\n };\n\n // Check git repository\n const gitInfo = await this.checkGitRepo();\n statusData.git_repository = gitInfo.isRepo;\n statusData.git_branch = gitInfo.branch;\n\n // Check git version (only if git is available)\n if (gitInfo.isRepo) {\n try {\n const { version, supported } = await checkGitVersion();\n statusData.git_version = `${version.major}.${version.minor}.${version.patch}`;\n statusData.git_version_supported = supported;\n } catch {\n // Git version check failed - leave as null/false\n }\n }\n\n // Check for beads (at project root, not cwd)\n const beadsInfo = await this.checkBeads(projectRoot);\n statusData.beads_detected = beadsInfo.detected;\n statusData.beads_issue_count = beadsInfo.issueCount;\n\n // Check integrations at project root (not cwd)\n statusData.integrations = await this.checkIntegrations(projectRoot);\n\n if (statusData.initialized && tbdRoot) {\n // Load config and issue info\n await this.loadPostInitInfo(tbdRoot, statusData);\n }\n\n this.output.data(statusData, () => {\n this.renderText(statusData);\n });\n }\n\n private async checkGitRepo(): Promise<{ isRepo: boolean; branch: string \| null }> {\n try {\n const branch = await getCurrentBranch();\n return { isRepo: true, branch };\n } catch {\n // getCurrentBranch may fail in repos with no commits\n // Fall back to checking if we're in a git repo using git rev-parse --git-dir\n try {\n await git('rev-parse', '--git-dir');\n // We're in a git repo but can't get branch (maybe no commits)\n return { isRepo: true, branch: null };\n } catch {\n return { isRepo: false, branch: null };\n }\n }\n }\n\n private async checkBeads(\n projectRoot: string,\n ): Promise<{ detected: boolean; issueCount: number \| null }> {\n const beadsDir = join(projectRoot, '.beads');\n try {\n await access(beadsDir);\n // Count issues in beads\n const issuesFile = join(beadsDir, 'issues.jsonl');\n try {\n const content = await readFile(issuesFile, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l.trim());\n return { detected: true, issueCount: lines.length };\n } catch {\n return { detected: true, issueCount: null };\n }\n } catch {\n return { detected: false, issueCount: null };\n }\n }\n\n private async checkIntegrations(projectRoot: string): Promise<StatusData['integrations']> {\n // All integrations use project-local paths (relative to git/project root)\n const claudePaths = getClaudePaths(projectRoot);\n const agentsPath = getAgentsMdPath(projectRoot);\n\n const result: StatusData['integrations'] = {\n claude_code: false,\n claude_code_path: CLAUDE_SETTINGS_DISPLAY,\n codex: false,\n codex_path: AGENTS_MD_DISPLAY,\n };\n\n // Check Claude Code hooks in project-local settings\n try {\n await access(claudePaths.settings);\n const content = await readFile(claudePaths.settings, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n const hooks = settings.hooks as Record<string, unknown> \| undefined;\n if (hooks) {\n const sessionStart = hooks.SessionStart as { hooks?: { command?: string }[] }[];\n result.claude_code =\n sessionStart?.some((h) => h.hooks?.some((hook) => hook.command?.includes('tbd'))) ??\n false;\n }\n } catch {\n // Not installed\n }\n\n // Check Codex AGENTS.md (also used by Cursor since v1.6)\n try {\n await access(agentsPath);\n const content = await readFile(agentsPath, 'utf-8');\n result.codex = content.includes('BEGIN TBD INTEGRATION');\n } catch {\n // Not installed\n }\n\n return result;\n }\n\n private async loadPostInitInfo(cwd: string, data: StatusData): Promise<void> {\n // Load config\n try {\n const config = await readConfig(cwd);\n data.sync_branch = config.sync.branch;\n data.remote = config.sync.remote;\n data.display_prefix = config.display.id_prefix;\n } catch {\n // Config read failed\n }\n\n // Check worktree health\n const worktreePath = join(cwd, WORKTREE_DIR);\n const worktreeHealth = await checkWorktreeHealth(cwd);\n data.worktree_path = worktreePath;\n data.worktree_healthy = worktreeHealth.valid;\n\n // Check workspaces\n try {\n data.workspaces = await listWorkspaces(cwd);\n } catch {\n // Workspace check failed - leave as empty\n }\n }\n\n private renderText(data: StatusData): void {\n const colors = this.output.getColors();\n\n if (!data.initialized) {\n // Pre-init output - unique to status, not shared with doctor\n this.renderPreInitText(data, colors);\n return;\n }\n\n // Post-init output - uses shared section renderers\n // REPOSITORY section (shared with doctor)\n renderRepositorySection(\n {\n version: data.tbd_version,\n workingDirectory: data.working_directory,\n initialized: data.initialized,\n gitRepository: data.git_repository,\n gitBranch: data.git_branch,\n gitVersion: data.git_version,\n gitVersionSupported: data.git_version_supported,\n },\n colors,\n );\n\n // Beads coexistence warning\n if (data.beads_detected) {\n renderBeadsWarning(colors);\n }\n\n // CONFIG section (shared with doctor)\n renderConfigSection(\n {\n syncBranch: data.sync_branch,\n remote: data.remote,\n displayPrefix: data.display_prefix,\n },\n colors,\n );\n\n // INTEGRATIONS section (shared with doctor)\n const integrationChecks: IntegrationCheck[] = [\n {\n name: 'Claude Code hooks',\n installed: data.integrations.claude_code,\n path: data.integrations.claude_code_path,\n },\n {\n name: 'Codex AGENTS.md',\n installed: data.integrations.codex,\n path: data.integrations.codex_path,\n },\n ];\n const hasMissingIntegrations = renderIntegrationsSection(integrationChecks, colors);\n\n if (hasMissingIntegrations) {\n console.log('');\n console.log(`Run ${colors.bold('tbd setup auto')} to configure detected agents`);\n }\n\n // Worktree health\n if (data.worktree_healthy !== null && data.worktree_path) {\n renderWorktreeStatus(data.worktree_path, data.worktree_healthy, colors);\n }\n\n // Workspaces (only show if there are any)\n if (data.workspaces.length > 0) {\n console.log('');\n console.log(colors.bold('WORKSPACES'));\n for (const ws of data.workspaces) {\n console.log(` ${ws}`);\n }\n }\n\n // Footer (shared format)\n renderFooter(\n [\n { command: 'tbd stats', description: 'issue statistics' },\n { command: 'tbd doctor', description: 'health checks' },\n ],\n colors,\n );\n }\n\n /\n Render pre-init text (unique to status command).\n * This is not shared with doctor since doctor requires initialization.\n /\n private renderPreInitText(\n data: StatusData,\n colors: ReturnType<typeof this.output.getColors>,\n ): void {\n console.log(`${colors.warn('Not a tbd repository.')}`);\n console.log('');\n console.log('Detected:');\n\n // Git status\n if (data.git_repository) {\n const branchInfo = data.git_branch ? ` (${data.git_branch} branch)` : '';\n console.log(` ${colors.success(ICONS.SUCCESS)} Git repository${branchInfo}`);\n // Show git version\n if (data.git_version) {\n const versionStatus = data.git_version_supported\n ? colors.success(ICONS.SUCCESS)\n : colors.warn(ICONS.WARN);\n const versionNote = data.git_version_supported\n ? ''\n : ` ${colors.dim(`(requires ${MIN_GIT_VERSION}+)`)}`;\n console.log(` ${versionStatus} Git ${data.git_version}${versionNote}`);\n }\n } else {\n console.log(` ${colors.error(ICONS.ERROR)} Git repository not found`);\n }\n\n // Beads status\n if (data.beads_detected) {\n const countInfo =\n data.beads_issue_count !== null ? ` (.beads/ with ${data.beads_issue_count} issues)` : '';\n console.log(` ${colors.success(ICONS.SUCCESS)} Beads repository${countInfo}`);\n } else {\n console.log(` ${colors.dim(ICONS.ERROR)} Beads not detected`);\n }\n\n // tbd status\n console.log(` ${colors.error(ICONS.ERROR)} tbd not initialized`);\n\n console.log('');\n console.log('To get started:');\n if (data.beads_detected) {\n console.log(\n ` ${colors.bold('tbd setup --auto')} # Migrate from Beads (recommended)`,\n );\n } else {\n console.log(\n ` ${colors.bold('tbd setup --auto --prefix=<name>')} # Full setup with prefix`,\n );\n }\n console.log(` ${colors.bold('tbd init --prefix=X')} # Surgical init only`);\n }\n}\n\nexport const statusCommand = new Command('status')\n .description('Show repository status and orientation')\n .action(async (_options, command) => {\n const handler = new StatusHandler(command);\n await handler.run();\n });\n","/\n `tbd stats` - Show repository statistics.\n \n See: tbd-design.md §4.9 Stats\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotInitializedError } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport type { Issue, IssueStatusType, IssueKindType } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { formatPriority } from '../../lib/priority.js';\nimport { renderFooter } from '../lib/sections.js';\nimport { getStatusIcon, getStatusColor } from '../../lib/status.js';\n\n/\n Active statuses (non-closed).\n /\nconst ACTIVE_STATUSES: IssueStatusType[] = ['open', 'in_progress', 'blocked', 'deferred'];\n\n/\n All statuses in display order.\n /\nconst STATUS_ORDER: IssueStatusType[] = ['open', 'in_progress', 'blocked', 'deferred', 'closed'];\n\n/\n All kinds in display order.\n /\nconst KIND_ORDER: IssueKindType[] = ['bug', 'feature', 'task', 'epic', 'chore'];\n\n/\n Priority labels for display.\n /\nconst PRIORITY_LABELS = ['Critical', 'High', 'Medium', 'Low', 'Lowest'];\n\nclass StatsHandler extends BaseCommand {\n async run(): Promise<void> {\n await requireInit();\n\n // Load all issues\n let issues: Issue[];\n try {\n const dataSyncDir = await resolveDataSyncDir();\n issues = await listIssues(dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Count by status\n const byStatus: Record<IssueStatusType, number> = {\n open: 0,\n in_progress: 0,\n blocked: 0,\n deferred: 0,\n closed: 0,\n };\n\n // Count by kind (active vs closed)\n const byKindActive: Record<IssueKindType, number> = {\n bug: 0,\n feature: 0,\n task: 0,\n epic: 0,\n chore: 0,\n };\n const byKindClosed: Record<IssueKindType, number> = {\n bug: 0,\n feature: 0,\n task: 0,\n epic: 0,\n chore: 0,\n };\n\n // Count by priority (active vs closed)\n const byPriorityActive: Record<number, number> = { 0: 0, 1: 0, 2: 0, 3: 0, 4: 0 };\n const byPriorityClosed: Record<number, number> = { 0: 0, 1: 0, 2: 0, 3: 0, 4: 0 };\n\n // Accumulate counts\n for (const issue of issues) {\n byStatus[issue.status]++;\n\n const isActive = issue.status !== 'closed';\n if (isActive) {\n byKindActive[issue.kind]++;\n if (issue.priority >= 0 && issue.priority <= 4) {\n byPriorityActive[issue.priority]!++;\n }\n } else {\n byKindClosed[issue.kind]++;\n if (issue.priority >= 0 && issue.priority <= 4) {\n byPriorityClosed[issue.priority]!++;\n }\n }\n }\n\n // Calculate totals\n const activeTotal = ACTIVE_STATUSES.reduce((sum, s) => sum + byStatus[s], 0);\n const closedTotal = byStatus.closed;\n const total = issues.length;\n\n const stats = {\n total,\n active: activeTotal,\n closed: closedTotal,\n byStatus,\n byKindActive,\n byKindClosed,\n byPriorityActive,\n byPriorityClosed,\n };\n\n this.output.data(stats, () => {\n const colors = this.output.getColors();\n\n if (stats.total === 0) {\n console.log(colors.dim('No issues found.'));\n renderFooter(\n [\n { command: 'tbd status', description: 'setup info' },\n { command: 'tbd doctor', description: 'health checks' },\n ],\n colors,\n );\n return;\n }\n\n // Column width for counts (right-aligned)\n const countWidth = 6;\n\n // === BY STATUS SECTION ===\n console.log(colors.bold('By status:'));\n\n // Find max count for determining column alignment\n const maxStatusCount = Math.max(...Object.values(stats.byStatus), activeTotal, total);\n const statusCountWidth = Math.max(countWidth, String(maxStatusCount).length + 2);\n\n // Show each status with icon and color\n for (const status of STATUS_ORDER) {\n const count = stats.byStatus[status];\n if (status === 'closed') continue; // Show closed after subtotal\n const icon = getStatusIcon(status);\n const colorFn = getStatusColor(status, colors);\n const countStr = String(count).padStart(statusCountWidth);\n console.log(` ${colorFn(icon)} ${status.padEnd(14)}${countStr}`);\n }\n\n // Subtotal separator and active total\n console.log(` ${'─'.repeat(16 + statusCountWidth)}`);\n console.log(` ${'active'.padEnd(14)}${String(activeTotal).padStart(statusCountWidth)}`);\n\n // Closed with icon\n const closedIcon = getStatusIcon('closed');\n const closedColorFn = getStatusColor('closed', colors);\n console.log(\n ` ${closedColorFn(closedIcon)} ${'closed'.padEnd(14)}${String(closedTotal).padStart(statusCountWidth)}`,\n );\n\n // Total separator and total\n console.log(` ${'═'.repeat(16 + statusCountWidth)}`);\n console.log(` ${'total'.padEnd(14)}${String(total).padStart(statusCountWidth)}`);\n\n // === BY KIND SECTION ===\n console.log('');\n const kindHeader = `${'By kind:'.padEnd(18)}${'active'.padStart(countWidth + 2)}${'closed'.padStart(countWidth + 2)}${'total'.padStart(countWidth + 2)}`;\n console.log(colors.bold(kindHeader));\n\n for (const kind of KIND_ORDER) {\n const active = stats.byKindActive[kind];\n const closed = stats.byKindClosed[kind];\n const kindTotal = active + closed;\n if (kindTotal === 0) continue;\n\n const line = ` ${kind.padEnd(16)}${String(active).padStart(countWidth + 2)}${String(closed).padStart(countWidth + 2)}${String(kindTotal).padStart(countWidth + 2)}`;\n console.log(line);\n }\n\n // === BY PRIORITY SECTION ===\n console.log('');\n const priorityHeader = `${'By priority:'.padEnd(18)}${'active'.padStart(countWidth + 2)}${'closed'.padStart(countWidth + 2)}${'total'.padStart(countWidth + 2)}`;\n console.log(colors.bold(priorityHeader));\n\n for (let i = 0; i <= 4; i++) {\n const active = stats.byPriorityActive[i] ?? 0;\n const closed = stats.byPriorityClosed[i] ?? 0;\n const priorityTotal = active + closed;\n if (priorityTotal === 0) continue;\n\n const label = `${formatPriority(i)} (${PRIORITY_LABELS[i]})`;\n const line = ` ${label.padEnd(16)}${String(active).padStart(countWidth + 2)}${String(closed).padStart(countWidth + 2)}${String(priorityTotal).padStart(countWidth + 2)}`;\n console.log(line);\n }\n\n // Footer (shared format)\n renderFooter(\n [\n { command: 'tbd status', description: 'setup info' },\n { command: 'tbd doctor', description: 'health checks' },\n ],\n colors,\n );\n });\n }\n}\n\nexport const statsCommand = new Command('stats')\n .description('Show repository statistics')\n .action(async (_options, command) => {\n const handler = new StatsHandler(command);\n await handler.run();\n });\n","/\n Shared diagnostic output utilities for consistent diagnostic messages\n * across doctor, setup --check, and status commands.\n \n See: plan-2026-01-17-cli-output-design-system.md\n /\n\nimport { ICONS } from './output.js';\n\n/\n Result of a diagnostic check. Used by doctor, setup --check, and status commands\n * to report configuration and health status.\n \n @property name - Display name of the check (e.g., \"Config file\", \"Git version\")\n * @property status - Check result: ok (pass), warn (non-blocking issue), error (failure)\n * @property message - Optional message with additional context (e.g., version number, count)\n * @property path - Optional file/directory path being checked\n * @property details - Optional list of specific items when issues found (e.g., orphaned deps)\n * @property fixable - Whether the issue can be auto-fixed (shown as [fixable] suffix)\n * @property suggestion - Optional actionable fix suggestion (e.g., \"Run: tbd setup claude\")\n /\nexport interface DiagnosticResult {\n name: string;\n status: 'ok' \| 'warn' \| 'error';\n message?: string;\n path?: string;\n details?: string[];\n fixable?: boolean;\n suggestion?: string;\n}\n\n/\n Color function type for consistent coloring across the module.\n /\ntype ColorFn = (text: string) => string;\n\n/\n Colors interface matching createColors() return type.\n /\ninterface Colors {\n success: ColorFn;\n error: ColorFn;\n warn: ColorFn;\n dim: ColorFn;\n}\n\n/\n Render a single diagnostic result to console.\n \n Format examples:\n * - ✓ Config file (.tbd/config.yml)\n * - ⚠ Dependencies - 2 orphaned reference(s) [fixable]\n * tbd-abc1 -> tbd-xyz9 (missing)\n * tbd-def2 -> tbd-uvw8 (missing)\n * - ✗ Issue validity - 2 invalid issue(s) (.tbd/issues)\n * tbd-aaa1: missing required field 'title'\n * Run: tbd doctor --fix\n \n @param result - The diagnostic result to render\n * @param colors - Color functions from createColors()\n /\nexport function renderDiagnostic(result: DiagnosticResult, colors: Colors): void {\n // Build the main line\n let line = '';\n\n // Icon based on status\n const icon =\n result.status === 'ok'\n ? colors.success(ICONS.SUCCESS)\n : result.status === 'warn'\n ? colors.warn(ICONS.WARN)\n : colors.error(ICONS.ERROR);\n\n line += `${icon} ${result.name}`;\n\n // Message after dash\n if (result.message) {\n line += ` - ${result.message}`;\n }\n\n // Path in parentheses\n if (result.path) {\n line += ` ${colors.dim(`(${result.path})`)}`;\n }\n\n // Fixable suffix (only for non-ok)\n if (result.fixable && result.status !== 'ok') {\n line += ` ${colors.dim('[fixable]')}`;\n }\n\n console.log(line);\n\n // Details (only for non-ok status)\n if (result.details && result.details.length > 0 && result.status !== 'ok') {\n for (const detail of result.details) {\n console.log(` ${colors.dim(detail)}`);\n }\n }\n\n // Suggestion (only for non-ok status)\n if (result.suggestion && result.status !== 'ok') {\n console.log(` ${colors.dim(result.suggestion)}`);\n }\n}\n\n/\n Render multiple diagnostic results.\n \n @param results - Array of diagnostic results to render\n * @param colors - Color functions from createColors()\n /\nexport function renderDiagnostics(results: DiagnosticResult[], colors: Colors): void {\n for (const result of results) {\n renderDiagnostic(result, colors);\n }\n}\n","/\n `tbd doctor` - Diagnose and repair repository.\n \n A comprehensive health check that includes status, stats, and health checks.\n \n See: tbd-design.md §4.9 Doctor\n /\n\nimport { Command } from 'commander';\nimport { access, readdir, readFile, unlink } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport { readConfig } from '../../file/config.js';\nimport type { Config, Issue, IssueStatusType } from '../../lib/types.js';\nimport { resolveDataSyncDir, TBD_DIR, WORKTREE_DIR, DATA_SYNC_DIR } from '../../lib/paths.js';\nimport {\n getClaudePaths,\n getAgentsMdPath,\n CLAUDE_SKILL_REL,\n AGENTS_MD_REL,\n} from '../../lib/integration-paths.js';\nimport { validateIssueId } from '../../lib/ids.js';\nimport {\n checkGitVersion,\n MIN_GIT_VERSION,\n getCurrentBranch,\n checkWorktreeHealth,\n checkLocalBranchHealth,\n checkRemoteBranchHealth,\n checkSyncConsistency,\n repairWorktree,\n migrateDataToWorktree,\n initWorktree,\n} from '../../file/git.js';\nimport { type DiagnosticResult, renderDiagnostics } from '../lib/diagnostics.js';\nimport { VERSION } from '../lib/version.js';\nimport { formatHeading } from '../lib/output.js';\nimport {\n renderRepositorySection,\n renderConfigSection,\n renderStatisticsSection,\n} from '../lib/sections.js';\n\nconst CONFIG_DIR = TBD_DIR;\n\ninterface DoctorOptions {\n fix?: boolean;\n}\n\nclass DoctorHandler extends BaseCommand {\n private dataSyncDir = '';\n private cwd = '';\n private config: Config \| null = null;\n private issues: Issue[] = [];\n\n async run(options: DoctorOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n this.cwd = tbdRoot;\n this.dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load config\n try {\n this.config = await readConfig(this.cwd);\n } catch {\n // Config may be invalid - will be caught by health checks\n }\n\n // Load issues\n try {\n this.issues = await listIssues(this.dataSyncDir);\n } catch {\n // May fail if no issues yet\n }\n\n // Gather status info\n const statusInfo = await this.gatherStatusInfo();\n\n // Gather stats info\n const statsInfo = this.gatherStatsInfo();\n\n // Run health checks (core system checks)\n const healthChecks: DiagnosticResult[] = [];\n\n // Check 1: Git version\n healthChecks.push(await this.checkGitVersion());\n\n // Check 2: Config directory and file\n healthChecks.push(await this.checkConfig());\n\n // Check 3: Issues directory\n healthChecks.push(await this.checkIssuesDirectory());\n\n // Check 4: Orphaned dependencies\n healthChecks.push(this.checkOrphanedDependencies(this.issues));\n\n // Check 5: Duplicate IDs\n healthChecks.push(this.checkDuplicateIds(this.issues));\n\n // Check 6: Orphaned temp files\n healthChecks.push(await this.checkTempFiles(options.fix));\n\n // Check 7: Issue validity\n healthChecks.push(this.checkIssueValidity(this.issues));\n\n // Check 8: Worktree health (with fix support)\n healthChecks.push(await this.checkWorktree(options.fix));\n\n // Check 9: Data location (issues in wrong path, with fix support)\n healthChecks.push(await this.checkDataLocation(options.fix));\n\n // Check 10: Local sync branch health\n healthChecks.push(await this.checkLocalSyncBranch());\n\n // Check 11: Remote sync branch health\n healthChecks.push(await this.checkRemoteSyncBranch());\n\n // Check 12: Local has data but remote empty (ai-trade-arena bug detection)\n healthChecks.push(await this.checkLocalVsRemoteData());\n\n // Check 13: Multi-user/clone scenario detection\n healthChecks.push(await this.checkCloneScenarios());\n\n // Check 14: Sync consistency (worktree matches local, ahead/behind counts)\n healthChecks.push(await this.checkSyncConsistency());\n\n // Run integration checks (optional IDE/agent integrations)\n const integrationChecks: DiagnosticResult[] = [];\n\n // Integration 1: Claude Code skill file\n integrationChecks.push(await this.checkClaudeSkill());\n\n // Integration 2: Codex AGENTS.md (also used by Cursor since v1.6)\n integrationChecks.push(await this.checkCodexAgents());\n\n // Combine for overall status\n const allChecks = [...healthChecks, ...integrationChecks];\n const allOk = allChecks.every((c) => c.status === 'ok');\n const hasFixable = allChecks.some((c) => c.fixable && c.status !== 'ok');\n\n this.output.data(\n { statusInfo, statsInfo, healthChecks, integrationChecks, healthy: allOk },\n () => {\n const colors = this.output.getColors();\n\n // REPOSITORY section (shared with status command)\n renderRepositorySection(\n {\n version: VERSION,\n workingDirectory: this.cwd,\n initialized: true, // doctor requires init\n gitRepository: !!statusInfo.gitBranch,\n gitBranch: statusInfo.gitBranch,\n gitVersion: null, // Git version is shown in health checks\n gitVersionSupported: true,\n },\n colors,\n { showHeading: true },\n );\n\n // CONFIG section (shared with status command)\n if (this.config) {\n renderConfigSection(\n {\n syncBranch: this.config.sync.branch,\n remote: this.config.sync.remote,\n displayPrefix: this.config.display.id_prefix,\n },\n colors,\n );\n }\n\n // STATISTICS section (shared with stats command)\n renderStatisticsSection(statsInfo, colors);\n\n // INTEGRATIONS section\n console.log('');\n console.log(colors.bold(formatHeading('Integrations')));\n renderDiagnostics(integrationChecks, colors);\n\n // HEALTH CHECKS section (doctor-only)\n console.log('');\n console.log(colors.bold(formatHeading('Health Checks')));\n renderDiagnostics(healthChecks, colors);\n\n // Final summary\n console.log('');\n if (allOk) {\n this.output.success('Repository is healthy');\n } else if (hasFixable && !options.fix) {\n this.output.warn('Issues found. Run with --fix to repair.');\n } else {\n this.output.warn('Issues found that may require manual intervention.');\n }\n },\n );\n }\n\n private async gatherStatusInfo(): Promise<{\n gitBranch: string \| null;\n worktreeHealthy: boolean;\n }> {\n let gitBranch: string \| null = null;\n try {\n gitBranch = await getCurrentBranch();\n } catch {\n // Not in a git repo or no commits\n }\n\n const worktreeHealth = await checkWorktreeHealth(this.cwd);\n\n return {\n gitBranch,\n worktreeHealthy: worktreeHealth.valid,\n };\n }\n\n private gatherStatsInfo(): {\n total: number;\n ready: number;\n inProgress: number;\n blocked: number;\n open: number;\n } {\n // Count by status\n const byStatus: Record<IssueStatusType, number> = {\n open: 0,\n in_progress: 0,\n blocked: 0,\n deferred: 0,\n closed: 0,\n };\n\n // Build set of blocked issue IDs\n const blockedIds = new Set<string>();\n for (const issue of this.issues) {\n for (const dep of issue.dependencies) {\n if (dep.type === 'blocks') {\n const blockedIssue = this.issues.find((i) => i.id === dep.target);\n if (blockedIssue && blockedIssue.status !== 'closed') {\n blockedIds.add(dep.target);\n }\n }\n }\n }\n\n // Count ready issues (open and not blocked)\n let readyCount = 0;\n\n for (const issue of this.issues) {\n byStatus[issue.status]++;\n if (issue.status === 'open' && !blockedIds.has(issue.id)) {\n readyCount++;\n }\n }\n\n return {\n total: this.issues.length,\n ready: readyCount,\n inProgress: byStatus.in_progress,\n blocked: blockedIds.size,\n open: byStatus.open,\n };\n }\n\n private async checkGitVersion(): Promise<DiagnosticResult> {\n try {\n const { version, supported } = await checkGitVersion();\n const versionStr = `${version.major}.${version.minor}.${version.patch}`;\n\n if (supported) {\n return {\n name: 'Git version',\n status: 'ok',\n message: versionStr,\n };\n }\n\n return {\n name: 'Git version',\n status: 'error',\n message: `${versionStr} (requires ${MIN_GIT_VERSION}+)`,\n suggestion: 'Upgrade Git: https://git-scm.com/downloads',\n };\n } catch (error) {\n const msg = error instanceof Error ? error.message : String(error);\n if (msg.includes('git') \|\| msg.includes('not found') \|\| msg.includes('ENOENT')) {\n return {\n name: 'Git version',\n status: 'error',\n message: 'Git not found',\n suggestion: 'Install Git: https://git-scm.com/downloads',\n };\n }\n return {\n name: 'Git version',\n status: 'warn',\n message: `Unable to check: ${msg}`,\n };\n }\n }\n\n private async checkConfig(): Promise<DiagnosticResult> {\n const configPath = join(CONFIG_DIR, 'config.yml');\n try {\n await access(join(this.cwd, configPath));\n await readConfig(this.cwd);\n return { name: 'Config file', status: 'ok', path: configPath };\n } catch (error) {\n const msg = (error as Error).message;\n if (msg.includes('ENOENT')) {\n return {\n name: 'Config file',\n status: 'error',\n message: 'not found',\n path: configPath,\n suggestion: 'Run: tbd init',\n };\n }\n return {\n name: 'Config file',\n status: 'error',\n message: 'Invalid config file',\n path: configPath,\n };\n }\n }\n\n private async checkIssuesDirectory(): Promise<DiagnosticResult> {\n const issuesPath = join(CONFIG_DIR, 'issues');\n try {\n await access(join(this.dataSyncDir, 'issues'));\n return { name: 'Issues directory', status: 'ok', path: issuesPath };\n } catch {\n // No issues directory is normal for a fresh/empty repo\n return {\n name: 'Issues directory',\n status: 'ok',\n message: 'empty (no issues yet)',\n path: issuesPath,\n };\n }\n }\n\n private checkOrphanedDependencies(issues: Issue[]): DiagnosticResult {\n const issueIds = new Set(issues.map((i) => i.id));\n const orphans: string[] = [];\n\n for (const issue of issues) {\n for (const dep of issue.dependencies) {\n if (!issueIds.has(dep.target)) {\n orphans.push(`${issue.id} -> ${dep.target} (missing)`);\n }\n }\n }\n\n if (orphans.length === 0) {\n return { name: 'Dependencies', status: 'ok' };\n }\n\n return {\n name: 'Dependencies',\n status: 'warn',\n message: `${orphans.length} orphaned reference(s)`,\n details: orphans,\n fixable: true,\n suggestion: 'Run: tbd doctor --fix',\n };\n }\n\n private checkDuplicateIds(issues: Issue[]): DiagnosticResult {\n const seen = new Set<string>();\n const duplicates: string[] = [];\n\n for (const issue of issues) {\n if (seen.has(issue.id)) {\n duplicates.push(issue.id);\n }\n seen.add(issue.id);\n }\n\n if (duplicates.length === 0) {\n return { name: 'Unique IDs', status: 'ok' };\n }\n\n return {\n name: 'Unique IDs',\n status: 'error',\n message: `${duplicates.length} duplicate ID(s)`,\n details: duplicates.map((id) => `${id} (duplicate)`),\n suggestion: 'Manually remove duplicate issue files',\n };\n }\n\n private async checkTempFiles(fix?: boolean): Promise<DiagnosticResult> {\n const issuesPath = join(CONFIG_DIR, 'issues');\n const issuesDir = join(this.dataSyncDir, 'issues');\n let tempFiles: string[] = [];\n\n try {\n const files = await readdir(issuesDir);\n tempFiles = files.filter((f) => f.endsWith('.tmp'));\n } catch {\n // Directory doesn't exist - no temp files\n return { name: 'Temp files', status: 'ok', path: issuesPath };\n }\n\n if (tempFiles.length === 0) {\n return { name: 'Temp files', status: 'ok', path: issuesPath };\n }\n\n if (fix && !this.checkDryRun('Clean temp files')) {\n // Clean up temp files\n for (const file of tempFiles) {\n try {\n await unlink(join(issuesDir, file));\n } catch {\n // Ignore errors\n }\n }\n return {\n name: 'Temp files',\n status: 'ok',\n message: `Cleaned ${tempFiles.length} temp file(s)`,\n path: issuesPath,\n };\n }\n\n return {\n name: 'Temp files',\n status: 'warn',\n message: `${tempFiles.length} orphaned temp file(s)`,\n path: issuesPath,\n details: tempFiles,\n fixable: true,\n suggestion: 'Run: tbd doctor --fix',\n };\n }\n\n private checkIssueValidity(issues: Issue[]): DiagnosticResult {\n const invalid: { id: string; reason: string }[] = [];\n\n for (const issue of issues) {\n const issueId = issue.id ?? 'unknown';\n // Check required fields\n if (!issue.id) {\n invalid.push({ id: issueId, reason: 'missing required field: id' });\n continue;\n }\n if (!issue.title) {\n invalid.push({ id: issueId, reason: 'missing required field: title' });\n continue;\n }\n if (!issue.status) {\n invalid.push({ id: issueId, reason: 'missing required field: status' });\n continue;\n }\n if (!issue.kind) {\n invalid.push({ id: issueId, reason: 'missing required field: kind' });\n continue;\n }\n // Check ID format\n if (!validateIssueId(issue.id)) {\n invalid.push({ id: issueId, reason: 'invalid ID format' });\n continue;\n }\n // Check priority range\n if (issue.priority < 0 \|\| issue.priority > 4) {\n invalid.push({ id: issueId, reason: `invalid priority ${issue.priority} (must be 0-4)` });\n }\n }\n\n if (invalid.length === 0) {\n return { name: 'Issue validity', status: 'ok' };\n }\n\n return {\n name: 'Issue validity',\n status: 'error',\n message: `${invalid.length} invalid issue(s)`,\n details: invalid.map((i) => `${i.id}: ${i.reason}`),\n suggestion: 'Manually fix or delete invalid issue files',\n };\n }\n\n private async checkClaudeSkill(): Promise<DiagnosticResult> {\n const claudePaths = getClaudePaths(this.cwd);\n try {\n await access(claudePaths.skill);\n return { name: 'Claude Code skill', status: 'ok', path: CLAUDE_SKILL_REL };\n } catch {\n return {\n name: 'Claude Code skill',\n status: 'warn',\n message: 'not installed',\n path: CLAUDE_SKILL_REL,\n suggestion: 'Run: tbd setup --auto',\n };\n }\n }\n\n private async checkCodexAgents(): Promise<DiagnosticResult> {\n const agentsPath = getAgentsMdPath(this.cwd);\n try {\n await access(agentsPath);\n const content = await readFile(agentsPath, 'utf-8');\n if (content.includes('BEGIN TBD INTEGRATION')) {\n return { name: 'Codex AGENTS.md', status: 'ok', path: AGENTS_MD_REL };\n }\n return {\n name: 'Codex AGENTS.md',\n status: 'warn',\n message: 'exists but missing tbd integration',\n path: AGENTS_MD_REL,\n suggestion: 'Run: tbd setup --auto',\n };\n } catch {\n return {\n name: 'Codex AGENTS.md',\n status: 'warn',\n message: 'not installed',\n path: AGENTS_MD_REL,\n suggestion: 'Run: tbd setup --auto',\n };\n }\n }\n\n /\n Check worktree health with enhanced status detection.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4\n /\n private async checkWorktree(fix?: boolean): Promise<DiagnosticResult> {\n const worktreePath = WORKTREE_DIR;\n const worktreeHealth = await checkWorktreeHealth(this.cwd);\n\n switch (worktreeHealth.status) {\n case 'valid':\n return { name: 'Worktree', status: 'ok', path: worktreePath };\n\n case 'missing':\n // Worktree not existing is OK - it's created on demand\n return { name: 'Worktree', status: 'ok', message: 'not created yet', path: worktreePath };\n\n case 'prunable':\n case 'corrupted': {\n // Attempt repair if --fix is provided and not in dry-run mode\n if (fix && !this.checkDryRun('Repair worktree')) {\n const result = await repairWorktree(this.cwd, worktreeHealth.status);\n\n if (result.success) {\n const message = result.backedUp\n ? `repaired (backed up to ${result.backedUp})`\n : 'repaired successfully';\n return { name: 'Worktree', status: 'ok', message, path: worktreePath };\n }\n\n return {\n name: 'Worktree',\n status: 'error',\n message: `repair failed: ${result.error}`,\n path: worktreePath,\n };\n }\n\n // No --fix flag, report the issue\n if (worktreeHealth.status === 'prunable') {\n return {\n name: 'Worktree',\n status: 'error',\n message: 'prunable (directory deleted)',\n path: worktreePath,\n details: [\n 'The worktree directory was deleted but git still tracks it.',\n 'This can cause data to be written to the wrong location.',\n ],\n fixable: true,\n suggestion: 'Run: tbd doctor --fix to recreate worktree',\n };\n }\n\n return {\n name: 'Worktree',\n status: 'error',\n message: worktreeHealth.error ?? 'corrupted',\n path: worktreePath,\n details: ['The worktree exists but is not a valid git worktree.'],\n fixable: true,\n suggestion: 'Run: tbd doctor --fix to repair',\n };\n }\n\n default:\n return {\n name: 'Worktree',\n status: 'warn',\n message: worktreeHealth.error ?? 'unknown status',\n path: worktreePath,\n fixable: true,\n suggestion: 'Run: tbd doctor --fix',\n };\n }\n }\n\n /\n Check for issues in wrong location.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §5\n \n Issues should be in .tbd/data-sync-worktree/.tbd/data-sync/issues/\n * If they're in .tbd/data-sync/issues/ on main branch, the worktree was missing\n * and data was written to the fallback path - this is a bug requiring migration.\n /\n private async checkDataLocation(fix?: boolean): Promise<DiagnosticResult> {\n const wrongPath = join(this.cwd, DATA_SYNC_DIR);\n const wrongIssuesPath = join(wrongPath, 'issues');\n\n // Try to list issues in the wrong location\n let wrongPathIssues: Issue[] = [];\n try {\n wrongPathIssues = await listIssues(wrongPath);\n } catch {\n // No issues in wrong path - this is expected\n }\n\n if (wrongPathIssues.length === 0) {\n return { name: 'Data location', status: 'ok' };\n }\n\n // Issues found in wrong location - attempt migration if --fix and not dry-run\n if (fix && !this.checkDryRun('Migrate data to worktree')) {\n // First ensure worktree exists - create it if missing\n let worktreeHealth = await checkWorktreeHealth(this.cwd);\n if (worktreeHealth.status === 'missing') {\n // Worktree doesn't exist yet - create it for migration\n const initResult = await initWorktree(this.cwd);\n if (!initResult.success) {\n return {\n name: 'Data location',\n status: 'error',\n message: `${wrongPathIssues.length} issue(s) in wrong location, failed to create worktree: ${initResult.error}`,\n path: wrongIssuesPath,\n };\n }\n worktreeHealth = await checkWorktreeHealth(this.cwd);\n }\n\n if (worktreeHealth.status !== 'valid') {\n return {\n name: 'Data location',\n status: 'error',\n message: `${wrongPathIssues.length} issue(s) in wrong location, worktree not ready`,\n path: wrongIssuesPath,\n details: [\n 'Cannot migrate: worktree must be repaired first.',\n 'The worktree repair should have run before this check.',\n ],\n };\n }\n\n // Migrate data to worktree\n const result = await migrateDataToWorktree(this.cwd);\n\n if (result.success) {\n const message = result.backupPath\n ? `migrated ${result.migratedCount} file(s), backed up to ${result.backupPath}`\n : `migrated ${result.migratedCount} file(s)`;\n return { name: 'Data location', status: 'ok', message, path: wrongIssuesPath };\n }\n\n return {\n name: 'Data location',\n status: 'error',\n message: `migration failed: ${result.error}`,\n path: wrongIssuesPath,\n };\n }\n\n // No --fix flag, report the issue\n return {\n name: 'Data location',\n status: 'error',\n message: `${wrongPathIssues.length} issue(s) in wrong location`,\n path: wrongIssuesPath,\n details: [\n `Found ${wrongPathIssues.length} issues in .tbd/data-sync/ (wrong)`,\n 'Issues should be in .tbd/data-sync-worktree/.tbd/data-sync/',\n 'This indicates the worktree was missing when issues were created',\n ],\n fixable: true,\n suggestion: 'Run: tbd doctor --fix to migrate issues to worktree',\n };\n }\n\n /\n Check local sync branch health.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n /\n private async checkLocalSyncBranch(): Promise<DiagnosticResult> {\n const syncBranch = this.config?.sync.branch ?? 'tbd-sync';\n const localHealth = await checkLocalBranchHealth(syncBranch);\n\n if (localHealth.exists && !localHealth.orphaned) {\n return { name: 'Local sync branch', status: 'ok', message: syncBranch };\n }\n\n if (!localHealth.exists) {\n // Local branch doesn't exist - check if remote exists\n const remote = this.config?.sync.remote ?? 'origin';\n const remoteHealth = await checkRemoteBranchHealth(remote, syncBranch);\n\n if (remoteHealth.exists) {\n // Remote exists but local doesn't - can be created from remote\n return {\n name: 'Local sync branch',\n status: 'warn',\n message: `${syncBranch} not found (remote exists)`,\n suggestion: 'Run: tbd sync to create from remote',\n };\n }\n\n // Neither local nor remote - new repo, this is OK\n return {\n name: 'Local sync branch',\n status: 'ok',\n message: 'not created yet',\n };\n }\n\n // Branch exists but is orphaned (no commits)\n return {\n name: 'Local sync branch',\n status: 'warn',\n message: `${syncBranch} exists but has no commits`,\n suggestion: 'Run: tbd sync to push data',\n };\n }\n\n /\n Check remote sync branch health.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n /\n private async checkRemoteSyncBranch(): Promise<DiagnosticResult> {\n const syncBranch = this.config?.sync.branch ?? 'tbd-sync';\n const remote = this.config?.sync.remote ?? 'origin';\n const remoteHealth = await checkRemoteBranchHealth(remote, syncBranch);\n\n if (remoteHealth.exists) {\n if (remoteHealth.diverged) {\n return {\n name: 'Remote sync branch',\n status: 'warn',\n message: `${remote}/${syncBranch} has diverged`,\n suggestion: 'Run: tbd sync to reconcile changes',\n };\n }\n return { name: 'Remote sync branch', status: 'ok', message: `${remote}/${syncBranch}` };\n }\n\n // Remote branch doesn't exist\n const localHealth = await checkLocalBranchHealth(syncBranch);\n if (localHealth.exists) {\n // Local exists but remote doesn't - needs push\n return {\n name: 'Remote sync branch',\n status: 'warn',\n message: `${remote}/${syncBranch} not found`,\n suggestion: 'Run: tbd sync to push local branch',\n };\n }\n\n // Neither exists - new repo, this is OK\n return {\n name: 'Remote sync branch',\n status: 'ok',\n message: 'not created yet',\n };\n }\n\n /\n Check for local data that hasn't been synced to remote.\n * This detects the ai-trade-arena bug scenario.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4\n /\n private async checkLocalVsRemoteData(): Promise<DiagnosticResult> {\n // Only check if worktree exists and has issues\n const worktreeHealth = await checkWorktreeHealth(this.cwd);\n if (worktreeHealth.status !== 'valid') {\n // Worktree not valid - can't compare\n return { name: 'Sync status', status: 'ok', message: 'worktree not active' };\n }\n\n // Count local issues in worktree\n const localIssueCount = this.issues.length;\n if (localIssueCount === 0) {\n return { name: 'Sync status', status: 'ok' };\n }\n\n // Check if remote branch exists and has commits\n const syncBranch = this.config?.sync.branch ?? 'tbd-sync';\n const remote = this.config?.sync.remote ?? 'origin';\n const remoteHealth = await checkRemoteBranchHealth(remote, syncBranch);\n\n if (!remoteHealth.exists) {\n // Remote doesn't exist - issues haven't been pushed\n return {\n name: 'Sync status',\n status: 'warn',\n message: `${localIssueCount} local issues, remote branch not found`,\n suggestion: 'Run: tbd sync to push issues to remote',\n };\n }\n\n // Note: Full remote issue count comparison would require fetching the remote\n // For now, we flag if local has issues but remote branch exists but is empty\n // This is detected by comparing commit counts or checking issue files\n // A simpler check: if worktree has uncommitted changes, we know they aren't synced\n\n return { name: 'Sync status', status: 'ok' };\n }\n\n /\n Check for multi-user/clone scenarios that indicate lost data.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §6\n /\n private async checkCloneScenarios(): Promise<DiagnosticResult> {\n // Only relevant if we have no issues\n const localIssueCount = this.issues.length;\n if (localIssueCount > 0) {\n return { name: 'Clone status', status: 'ok' };\n }\n\n // Check 1: Beads migration evidence exists but tbd has no issues\n const beadsDisabledPath = join(this.cwd, '.beads-disabled');\n let beadsMigrationExists = false;\n try {\n await access(beadsDisabledPath);\n beadsMigrationExists = true;\n } catch {\n // No beads migration - that's fine\n }\n\n if (beadsMigrationExists) {\n // Check if beads had issues\n const beadsJsonl = join(beadsDisabledPath, '.beads', 'issues.jsonl');\n let beadsIssueCount = 0;\n try {\n const content = await readFile(beadsJsonl, 'utf-8');\n beadsIssueCount = content.trim().split('\\n').filter(Boolean).length;\n } catch {\n // Can't read beads file - ignore\n }\n\n if (beadsIssueCount > 0) {\n return {\n name: 'Clone status',\n status: 'error',\n message: `Beads migration has ${beadsIssueCount} issues, tbd has none`,\n details: [\n 'This repo was migrated from beads but issues were never synced.',\n 'Another user may have the issues locally but they were not pushed.',\n ],\n suggestion: 'Contact the repo owner to run: tbd sync',\n };\n }\n }\n\n // Check 2: Config has id_prefix but no issues (suggests prior usage)\n if (!beadsMigrationExists && this.config?.display?.id_prefix) {\n return {\n name: 'Clone status',\n status: 'warn',\n message: `Config has prefix '${this.config.display.id_prefix}' but no issues`,\n details: [\n 'This suggests issues may have been created but not synced,',\n 'or were lost due to sync issues on another machine.',\n ],\n suggestion: 'If you expect issues to exist, contact the repo owner',\n };\n }\n\n // Check 3: Active beads directory exists (not migrated yet)\n const beadsPath = join(this.cwd, '.beads');\n let beadsActiveExists = false;\n try {\n await access(beadsPath);\n beadsActiveExists = true;\n } catch {\n // No active beads - that's fine\n }\n\n if (beadsActiveExists) {\n return {\n name: 'Clone status',\n status: 'ok',\n message: 'beads directory exists (migration available)',\n };\n }\n\n return { name: 'Clone status', status: 'ok' };\n }\n\n /\n Check sync consistency - worktree matches local, ahead/behind counts.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4\n /\n private async checkSyncConsistency(): Promise<DiagnosticResult> {\n const syncBranch = this.config?.sync.branch ?? 'tbd-sync';\n const remote = this.config?.sync.remote ?? 'origin';\n\n // Only check if worktree is valid\n const worktreeHealth = await checkWorktreeHealth(this.cwd);\n if (worktreeHealth.status !== 'valid') {\n return { name: 'Sync consistency', status: 'ok', message: 'worktree not active' };\n }\n\n try {\n const consistency = await checkSyncConsistency(this.cwd, syncBranch, remote);\n\n // Check if worktree matches local\n if (!consistency.worktreeMatchesLocal) {\n return {\n name: 'Sync consistency',\n status: 'error',\n message: 'worktree HEAD does not match local branch',\n details: [\n `Worktree HEAD: ${consistency.worktreeHead.slice(0, 7)}`,\n `Local ${syncBranch}: ${consistency.localHead.slice(0, 7)}`,\n ],\n fixable: true,\n suggestion: 'Run: tbd doctor --fix to synchronize',\n };\n }\n\n // Check ahead/behind status\n if (consistency.localAhead > 0 && consistency.localBehind > 0) {\n return {\n name: 'Sync consistency',\n status: 'warn',\n message: `diverged (${consistency.localAhead} ahead, ${consistency.localBehind} behind)`,\n suggestion: 'Run: tbd sync to reconcile',\n };\n }\n\n if (consistency.localAhead > 0) {\n return {\n name: 'Sync consistency',\n status: 'warn',\n message: `${consistency.localAhead} commit(s) ahead of remote`,\n suggestion: 'Run: tbd sync to push changes',\n };\n }\n\n if (consistency.localBehind > 0) {\n return {\n name: 'Sync consistency',\n status: 'warn',\n message: `${consistency.localBehind} commit(s) behind remote`,\n suggestion: 'Run: tbd sync to pull changes',\n };\n }\n\n return { name: 'Sync consistency', status: 'ok' };\n } catch (error) {\n // Sync consistency check failed - may be normal if branches don't exist yet\n const msg = error instanceof Error ? error.message : String(error);\n if (msg.includes('not found') \|\| msg.includes('no commits')) {\n return { name: 'Sync consistency', status: 'ok', message: 'branches not yet established' };\n }\n return {\n name: 'Sync consistency',\n status: 'warn',\n message: `Unable to check: ${msg}`,\n };\n }\n }\n}\n\nexport const doctorCommand = new Command('doctor')\n .description('Diagnose and repair repository')\n .option('--fix', 'Attempt to fix issues')\n .action(async (options, command) => {\n const handler = new DoctorHandler(command);\n await handler.run(options);\n });\n","/\n `tbd config` - Configuration management.\n \n See: tbd-design.md §4.9 Config\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotInitializedError, ValidationError } from '../lib/errors.js';\nimport { readConfig, writeConfig } from '../../file/config.js';\nimport type { Config } from '../../lib/types.js';\n\n// Show config\nclass ConfigShowHandler extends BaseCommand {\n async run(): Promise<void> {\n await requireInit();\n\n let config: Config;\n try {\n config = await readConfig('.');\n } catch {\n throw new NotInitializedError('No configuration found. Run `tbd init` first.');\n }\n\n this.output.data(config, () => {\n // Output as YAML format\n const colors = this.output.getColors();\n console.log(`${colors.dim('tbd_version:')} ${config.tbd_version}`);\n console.log(`${colors.dim('sync:')}`);\n console.log(` ${colors.dim('branch:')} ${config.sync.branch}`);\n console.log(` ${colors.dim('remote:')} ${config.sync.remote}`);\n console.log(`${colors.dim('display:')}`);\n console.log(` ${colors.dim('id_prefix:')} ${config.display.id_prefix}`);\n console.log(`${colors.dim('settings:')}`);\n console.log(` ${colors.dim('auto_sync:')} ${config.settings.auto_sync}`);\n });\n }\n}\n\n// Set config value\nclass ConfigSetHandler extends BaseCommand {\n async run(key: string, value: string): Promise<void> {\n await requireInit();\n\n let config: Config;\n try {\n config = await readConfig('.');\n } catch {\n throw new NotInitializedError('No configuration found. Run `tbd init` first.');\n }\n\n if (this.checkDryRun('Would set config', { key, value })) {\n return;\n }\n\n // Parse the key path and set value\n const keys = key.split('.');\n const parsedValue = this.parseValue(value);\n\n try {\n this.setNestedValue(config, keys, parsedValue);\n } catch {\n throw new ValidationError(`Invalid key: ${key}`);\n }\n\n await this.execute(async () => {\n await writeConfig('.', config);\n }, 'Failed to write config');\n\n this.output.success(`Set ${key} = ${value}`);\n }\n\n private parseValue(value: string): unknown {\n // Parse boolean\n if (value === 'true') return true;\n if (value === 'false') return false;\n // Parse number\n const num = Number(value);\n if (!isNaN(num)) return num;\n // Return as string\n return value;\n }\n\n private setNestedValue(obj: Record<string, unknown>, keys: string[], value: unknown): void {\n let current = obj;\n for (let i = 0; i < keys.length - 1; i++) {\n const key = keys[i]!;\n if (typeof current[key] !== 'object' \|\| current[key] === null) {\n throw new Error(`Invalid path: ${keys.slice(0, i + 1).join('.')}`);\n }\n current = current[key] as Record<string, unknown>;\n }\n const lastKey = keys[keys.length - 1]!;\n if (!(lastKey in current)) {\n throw new Error(`Unknown key: ${keys.join('.')}`);\n }\n current[lastKey] = value;\n }\n}\n\n// Get config value\nclass ConfigGetHandler extends BaseCommand {\n async run(key: string): Promise<void> {\n await requireInit();\n\n let config: Config;\n try {\n config = await readConfig('.');\n } catch {\n throw new NotInitializedError('No configuration found. Run `tbd init` first.');\n }\n\n const keys = key.split('.');\n let value: unknown = config;\n\n for (const k of keys) {\n if (typeof value !== 'object' \|\| value === null \|\| !(k in value)) {\n throw new ValidationError(`Unknown key: ${key}`);\n }\n value = (value as Record<string, unknown>)[k];\n }\n\n this.output.data({ key, value }, () => {\n console.log(String(value));\n });\n }\n}\n\nconst showConfigCommand = new Command('show')\n .description('Show all configuration')\n .action(async (_options, command) => {\n const handler = new ConfigShowHandler(command);\n await handler.run();\n });\n\nconst setConfigCommand = new Command('set')\n .description('Set a configuration value')\n .argument('<key>', 'Configuration key (e.g., sync.branch)')\n .argument('<value>', 'Value to set')\n .action(async (key, value, _options, command) => {\n const handler = new ConfigSetHandler(command);\n await handler.run(key, value);\n });\n\nconst getConfigCommand = new Command('get')\n .description('Get a configuration value')\n .argument('<key>', 'Configuration key')\n .action(async (key, _options, command) => {\n const handler = new ConfigGetHandler(command);\n await handler.run(key);\n });\n\nexport const configCommand = new Command('config')\n .description('Manage configuration')\n .addCommand(showConfigCommand)\n .addCommand(setConfigCommand)\n .addCommand(getConfigCommand);\n","/\n `tbd attic` - Attic (conflict archive) commands.\n \n See: tbd-design.md §4.11 Attic Commands\n /\n\nimport { Command } from 'commander';\nimport { readdir, readFile, mkdir } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport { parse as parseYaml, stringify as stringifyYaml } from 'yaml';\n\nimport { writeFile } from 'atomically';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, ValidationError } from '../lib/errors.js';\nimport { readIssue, writeIssue } from '../../file/storage.js';\nimport { normalizeIssueId, formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { resolveDataSyncDir, resolveAtticDir } from '../../lib/paths.js';\nimport { formatTimestampAgo } from '../../lib/format-utils.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\nimport type { AtticEntry } from '../../lib/types.js';\n\n/\n Get attic entry filename from components.\n /\nfunction getAtticFilename(entityId: string, timestamp: string, field: string): string {\n // Convert timestamp colons to hyphens for filesystem safety\n const safeTimestamp = timestamp.replace(/:/g, '-');\n return `${entityId}_${safeTimestamp}_${field}.yml`;\n}\n\n/\n Parse attic entry filename to components.\n /\nfunction parseAtticFilename(\n filename: string,\n): { entityId: string; timestamp: string; field: string } \| null {\n // Format: is-abc123_2025-01-07T10-30-00Z_description.yml\n const match = /^(is-[a-f0-9]+)_(.+)_([^_]+)\\.yml$/.exec(filename);\n if (!match) return null;\n const [, entityId, timestamp, field] = match;\n // Convert hyphens back to colons in timestamp\n const isoTimestamp = timestamp!.replace(/T(\\d{2})-(\\d{2})-(\\d{2})/, 'T$1:$2:$3');\n return { entityId: entityId!, timestamp: isoTimestamp, field: field! };\n}\n\n/\n List all attic entries.\n /\nasync function listAtticEntries(filterById?: string): Promise<AtticEntry[]> {\n const atticPath = await resolveAtticDir();\n let files: string[];\n\n try {\n files = await readdir(atticPath);\n } catch {\n // Attic directory doesn't exist - return empty\n return [];\n }\n\n const entries: AtticEntry[] = [];\n\n for (const file of files) {\n if (!file.endsWith('.yml')) continue;\n\n const parsed = parseAtticFilename(file);\n if (!parsed) continue;\n\n // Filter by ID if specified\n if (filterById && parsed.entityId !== filterById) continue;\n\n try {\n const content = await readFile(join(atticPath, file), 'utf-8');\n const entry = parseYaml(content) as AtticEntry;\n entries.push(entry);\n } catch {\n // Skip invalid files\n }\n }\n\n // Sort by timestamp descending (most recent first)\n entries.sort((a, b) => b.timestamp.localeCompare(a.timestamp));\n\n return entries;\n}\n\n/\n Save an attic entry.\n /\nexport async function saveAtticEntry(entry: AtticEntry): Promise<void> {\n const atticPath = await resolveAtticDir();\n await mkdir(atticPath, { recursive: true });\n\n const filename = getAtticFilename(entry.entity_id, entry.timestamp, entry.field);\n const filepath = join(atticPath, filename);\n const content = stringifyYaml(entry, { sortMapEntries: true });\n\n await writeFile(filepath, content);\n}\n\n// List attic entries\nclass AtticListHandler extends BaseCommand {\n async run(id?: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const filterId = id ? normalizeIssueId(id) : undefined;\n const entries = await listAtticEntries(filterId);\n\n // Load ID mapping and config for display\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n const mapping = await loadIdMapping(dataSyncDir);\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const showDebug = this.ctx.debug;\n\n const output = entries.map((e) => ({\n id: showDebug\n ? formatDebugId(e.entity_id, mapping, prefix)\n : formatDisplayId(e.entity_id, mapping, prefix),\n timestamp: e.timestamp,\n field: e.field,\n winner: e.winner_source,\n }));\n\n this.output.data(output, () => {\n const colors = this.output.getColors();\n if (output.length === 0) {\n console.log('No attic entries');\n return;\n }\n console.log(\n `${colors.dim('ID'.padEnd(12))}${colors.dim('WHEN'.padEnd(14))}${colors.dim('FIELD'.padEnd(14))}${colors.dim('WINNER')}`,\n );\n for (const entry of output) {\n const when = formatTimestampAgo(entry.timestamp) ?? entry.timestamp;\n console.log(\n `${colors.id(entry.id.padEnd(12))}${when.padEnd(14)}${entry.field.padEnd(14)}${entry.winner}`,\n );\n }\n });\n }\n}\n\n// Show attic entry\nclass AtticShowHandler extends BaseCommand {\n async run(id: string, timestamp: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const normalizedId = normalizeIssueId(id);\n const entries = await listAtticEntries(normalizedId);\n\n // Find entry matching timestamp (approximate match for different formats)\n const entry = entries.find(\n (e) => e.timestamp === timestamp \|\| e.timestamp.replace(/:/g, '-') === timestamp,\n );\n\n if (!entry) {\n throw new NotFoundError('Attic entry', `${id} at ${timestamp}`);\n }\n\n // Load ID mapping and config for display\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n const mapping = await loadIdMapping(dataSyncDir);\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const showDebug = this.ctx.debug;\n const displayId = showDebug\n ? formatDebugId(entry.entity_id, mapping, prefix)\n : formatDisplayId(entry.entity_id, mapping, prefix);\n\n this.output.data(entry, () => {\n const colors = this.output.getColors();\n console.log(`${colors.bold('Entity:')} ${displayId}`);\n console.log(`${colors.bold('Timestamp:')} ${entry.timestamp}`);\n console.log(`${colors.bold('Field:')} ${entry.field}`);\n console.log(`${colors.bold('Winner:')} ${entry.winner_source}`);\n console.log(`${colors.bold('Loser:')} ${entry.loser_source}`);\n console.log('');\n console.log(`${colors.bold('Lost value:')}`);\n console.log(entry.lost_value);\n console.log('');\n console.log(`${colors.bold('Context:')}`);\n console.log(` Local version: ${entry.context.local_version}`);\n console.log(` Remote version: ${entry.context.remote_version}`);\n const localAgo = formatTimestampAgo(entry.context.local_updated_at);\n const remoteAgo = formatTimestampAgo(entry.context.remote_updated_at);\n console.log(` Local updated: ${localAgo ?? entry.context.local_updated_at}`);\n console.log(` Remote updated: ${remoteAgo ?? entry.context.remote_updated_at}`);\n });\n }\n}\n\n// Restore from attic\nclass AtticRestoreHandler extends BaseCommand {\n async run(id: string, timestamp: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const normalizedId = normalizeIssueId(id);\n const entries = await listAtticEntries(normalizedId);\n\n // Find entry matching timestamp\n const entry = entries.find(\n (e) => e.timestamp === timestamp \|\| e.timestamp.replace(/:/g, '-') === timestamp,\n );\n\n if (!entry) {\n throw new NotFoundError('Attic entry', `${id} at ${timestamp}`);\n }\n\n if (this.checkDryRun('Would restore from attic', { id: normalizedId, field: entry.field })) {\n return;\n }\n\n // Load the current issue\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n let issue;\n try {\n issue = await readIssue(dataSyncDir, normalizedId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Restore the field value\n const field = entry.field as keyof typeof issue;\n if (field === 'description' \|\| field === 'notes' \|\| field === 'title') {\n (issue as Record<string, unknown>)[field] = entry.lost_value;\n } else {\n throw new ValidationError(`Cannot restore field: ${entry.field}`);\n }\n\n issue.version += 1;\n issue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to restore from attic');\n\n // Load ID mapping and config for display\n const mapping = await loadIdMapping(dataSyncDir);\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const showDebug = this.ctx.debug;\n const displayId = showDebug\n ? formatDebugId(normalizedId, mapping, prefix)\n : formatDisplayId(normalizedId, mapping, prefix);\n\n this.output.success(`Restored ${entry.field} for ${displayId} from attic entry ${timestamp}`);\n }\n}\n\ninterface AtticListOptions {\n since?: string;\n limit?: string;\n}\n\nconst listAtticCommand = new Command('list')\n .description('List attic entries')\n .argument('[id]', 'Filter by issue ID')\n .option('--since <date>', 'Entries since date')\n .option('--limit <n>', 'Limit results')\n .action(async (id, options: AtticListOptions, command) => {\n const handler = new AtticListHandler(command);\n await handler.run(id);\n });\n\nconst showAtticCommand = new Command('show')\n .description('Show attic entry details')\n .argument('<id>', 'Issue ID')\n .argument('<timestamp>', 'Entry timestamp')\n .action(async (id, timestamp, _options, command) => {\n const handler = new AtticShowHandler(command);\n await handler.run(id, timestamp);\n });\n\nconst restoreAtticCommand = new Command('restore')\n .description('Restore lost value from attic')\n .argument('<id>', 'Issue ID')\n .argument('<timestamp>', 'Entry timestamp')\n .action(async (id, timestamp, _options, command) => {\n const handler = new AtticRestoreHandler(command);\n await handler.run(id, timestamp);\n });\n\nexport const atticCommand = new Command('attic')\n .description('Manage conflict archive (attic)')\n .addCommand(listAtticCommand)\n .addCommand(showAtticCommand)\n .addCommand(restoreAtticCommand);\n","/\n `tbd import` - Import from Beads or other sources.\n \n See: tbd-design.md §5.1 Import Strategy\n /\n\nimport { Command } from 'commander';\nimport { readFile, access } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, ValidationError, NotFoundError } from '../lib/errors.js';\nimport { writeIssue, listIssues } from '../../file/storage.js';\nimport {\n generateInternalId,\n extractShortId,\n extractUlidFromInternalId,\n makeInternalId,\n extractPrefix,\n} from '../../lib/ids.js';\nimport {\n loadIdMapping,\n saveIdMapping,\n addIdMapping,\n hasShortId,\n generateUniqueShortId,\n} from '../../file/id-mapping.js';\nimport { IssueStatus, IssueKind } from '../../lib/schemas.js';\nimport type { Issue, IssueStatusType, IssueKindType, DependencyType } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now, normalizeTimestamp } from '../../utils/time-utils.js';\nimport { readConfig, writeConfig } from '../../file/config.js';\nimport {\n importFromWorkspace,\n type ImportOptions as WorkspaceImportOptions,\n} from '../../file/workspace.js';\n\ninterface ImportOptions {\n beadsDir?: string;\n merge?: boolean;\n verbose?: boolean;\n validate?: boolean;\n // Workspace import options\n workspace?: string;\n dir?: string;\n outbox?: boolean;\n clearOnSuccess?: boolean;\n}\n\ninterface ValidationIssue {\n beadsId: string;\n tbdId?: string;\n issue: string;\n severity: 'error' \| 'warning';\n}\n\n/\n Beads issue structure (from JSONL export).\n /\ninterface BeadsIssue {\n id: string;\n title: string;\n description?: string;\n notes?: string;\n type?: string;\n issue_type?: string;\n status: string;\n priority?: number;\n assignee?: string;\n labels?: string[];\n dependencies?: { type: string; target: string }[];\n created_at: string;\n updated_at: string;\n closed_at?: string;\n close_reason?: string;\n due?: string;\n defer?: string;\n parent?: string;\n}\n\n/\n BeadsTotbd mapping: maps beads external ID to tbd internal ID.\n * This is a local structure used during import processing.\n /\ntype BeadsTotbdMapping = Record<string, string>;\n\n/\n Map Beads status to tbd status.\n /\nfunction mapStatus(beadsStatus: string): IssueStatusType {\n const statusMap: Record<string, IssueStatusType> = {\n open: 'open',\n in_progress: 'in_progress',\n blocked: 'blocked',\n deferred: 'deferred',\n done: 'closed', // Beads uses 'done' for completed items\n closed: 'closed',\n tombstone: 'closed',\n };\n const result = IssueStatus.safeParse(statusMap[beadsStatus] ?? beadsStatus);\n return result.success ? result.data : 'open';\n}\n\n/\n Map Beads issue type to tbd kind.\n /\nfunction mapKind(beadsType?: string): IssueKindType {\n const kindMap: Record<string, IssueKindType> = {\n bug: 'bug',\n feature: 'feature',\n task: 'task',\n epic: 'epic',\n chore: 'chore',\n };\n if (!beadsType) return 'task';\n const result = IssueKind.safeParse(kindMap[beadsType] ?? beadsType);\n return result.success ? result.data : 'task';\n}\n\n/\n Convert Beads issue to tbd issue.\n /\nfunction convertIssue(beads: BeadsIssue, tbdId: string, depMapping: BeadsTotbdMapping): Issue {\n // Convert dependencies, translating IDs\n const dependencies: DependencyType[] = [];\n if (beads.dependencies) {\n for (const dep of beads.dependencies) {\n if (dep.type === 'blocks' \|\| dep.type === 'blocked_by') {\n const targetId = depMapping[dep.target];\n if (targetId) {\n // \"blocked_by\" in Beads means the target blocks this issue\n // In tbd, we only have \"blocks\", so we need to handle this carefully\n // For now, we store \"blocks\" dependencies directly\n if (dep.type === 'blocks') {\n dependencies.push({ type: 'blocks', target: targetId });\n }\n // Note: blocked_by would need to be added to the target issue's dependencies\n }\n }\n }\n }\n\n return {\n type: 'is',\n id: tbdId,\n version: 1,\n kind: mapKind(beads.type ?? beads.issue_type),\n title: beads.title,\n description: beads.description,\n notes: beads.notes,\n status: mapStatus(beads.status),\n priority: beads.priority ?? 2,\n assignee: beads.assignee,\n labels: beads.labels ?? [],\n dependencies,\n created_at: normalizeTimestamp(beads.created_at) ?? now(),\n updated_at: normalizeTimestamp(beads.updated_at) ?? now(),\n closed_at: normalizeTimestamp(beads.closed_at),\n close_reason: beads.close_reason ?? null,\n due_date: normalizeTimestamp(beads.due),\n deferred_until: normalizeTimestamp(beads.defer),\n parent_id: beads.parent ? depMapping[beads.parent] : null,\n extensions: {\n beads: {\n original_id: beads.id,\n imported_at: now(),\n },\n },\n };\n}\n\nclass ImportHandler extends BaseCommand {\n private dataSyncDir = '';\n\n async run(file: string \| undefined, options: ImportOptions): Promise<void> {\n // Check if this is a workspace import\n const isWorkspaceImport =\n options.workspace != null \|\| options.dir != null \|\| options.outbox === true;\n\n if (isWorkspaceImport) {\n await this.importFromWorkspaceCmd(options);\n return;\n }\n\n // Validate input first\n if (!file && !options.validate) {\n throw new ValidationError(\n 'Provide a JSONL file path to import.\\n\\n' +\n 'For Beads migration, use: tbd setup --from-beads\\n' +\n 'For workspace import, use: tbd import --workspace=<name> or --outbox',\n );\n }\n\n // Handle validation mode - requires init\n if (options.validate) {\n await requireInit();\n this.dataSyncDir = await resolveDataSyncDir();\n await this.validateImport(options);\n return;\n }\n\n // File import requires initialization\n if (file) {\n await requireInit();\n this.dataSyncDir = await resolveDataSyncDir();\n await this.importFromFile(file, options);\n }\n }\n\n /\n Import issues from a workspace.\n /\n private async importFromWorkspaceCmd(options: ImportOptions): Promise<void> {\n const tbdRoot = await requireInit();\n this.dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n const wsOptions: WorkspaceImportOptions = {\n workspace: options.workspace,\n dir: options.dir,\n outbox: options.outbox,\n clearOnSuccess: options.clearOnSuccess,\n };\n\n if (this.checkDryRun('Would import from workspace', wsOptions)) {\n return;\n }\n\n const spinner = this.output.spinner('Importing from workspace...');\n\n const result = await this.execute(async () => {\n return await importFromWorkspace(tbdRoot, this.dataSyncDir, wsOptions);\n }, 'Failed to import from workspace');\n\n spinner.stop();\n\n if (!result) {\n return;\n }\n\n // Format output\n const sourceName = options.outbox ? 'outbox' : (options.workspace ?? options.dir ?? 'unknown');\n\n this.output.data(\n {\n imported: result.imported,\n conflicts: result.conflicts,\n source: sourceName,\n cleared: result.cleared,\n },\n () => {\n if (result.imported === 0) {\n this.output.info('No issues to import');\n } else {\n this.output.success(`Imported ${result.imported} issue(s) from ${sourceName}`);\n if (result.conflicts > 0) {\n this.output.warn(`${result.conflicts} conflict(s) moved to attic`);\n }\n if (result.cleared) {\n this.output.info(`Workspace \"${sourceName}\" cleared`);\n }\n // Suggest next step\n this.output.info('Run `tbd sync` to commit and push imported issues');\n }\n },\n );\n }\n\n /\n Validate import by comparing Beads source with imported tbd issues.\n * Reports any discrepancies or missing issues.\n /\n private async validateImport(options: ImportOptions): Promise<void> {\n const beadsDir = options.beadsDir ?? '.beads';\n const jsonlPath = join(beadsDir, 'issues.jsonl');\n\n try {\n await access(jsonlPath);\n } catch {\n throw new NotFoundError('Beads database', `${beadsDir} (use --beads-dir to specify)`);\n }\n\n console.log('Validating import...\\n');\n\n // Load Beads issues\n const content = await readFile(jsonlPath, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l);\n const beadsIssues: BeadsIssue[] = [];\n\n for (const line of lines) {\n try {\n const issue = JSON.parse(line) as BeadsIssue;\n if (issue.id && issue.title) {\n beadsIssues.push(issue);\n }\n } catch {\n // Skip invalid lines\n }\n }\n\n // Load tbd issues and short ID mapping\n const tbdIssues = await this.loadExistingIssues();\n const shortIdMapping = await loadIdMapping(this.dataSyncDir);\n\n // Build mapping from beads ID to tbd internal ID using preserved short IDs\n // e.g., \"tbd-100\" -> extract \"100\" -> lookup in shortIdMapping -> \"is-{ulid}\"\n const beadsTotbd: BeadsTotbdMapping = {};\n const reverseMapping: Record<string, string> = {};\n\n for (const beads of beadsIssues) {\n const shortId = extractShortId(beads.id);\n const ulid = shortIdMapping.shortToUlid.get(shortId);\n if (ulid) {\n const internalId = makeInternalId(ulid);\n beadsTotbd[beads.id] = internalId;\n reverseMapping[internalId] = beads.id;\n }\n }\n\n // Build lookup by tbd ID\n const tbdById = new Map<string, Issue>();\n for (const issue of tbdIssues) {\n tbdById.set(issue.id, issue);\n }\n\n // Validate each Beads issue\n const issues: ValidationIssue[] = [];\n let validCount = 0;\n\n for (const beads of beadsIssues) {\n const tbdId = beadsTotbd[beads.id];\n\n if (!tbdId) {\n issues.push({\n beadsId: beads.id,\n issue: 'Not imported - no ID mapping exists',\n severity: 'error',\n });\n continue;\n }\n\n const tbdIssue = tbdById.get(tbdId);\n if (!tbdIssue) {\n issues.push({\n beadsId: beads.id,\n tbdId,\n issue: 'ID mapping exists but issue file not found',\n severity: 'error',\n });\n continue;\n }\n\n // Validate fields\n const fieldIssues: string[] = [];\n\n if (tbdIssue.title !== beads.title) {\n fieldIssues.push(`title mismatch: \"${tbdIssue.title}\" vs \"${beads.title}\"`);\n }\n\n const expectedStatus = mapStatus(beads.status);\n if (tbdIssue.status !== expectedStatus) {\n fieldIssues.push(`status mismatch: \"${tbdIssue.status}\" vs expected \"${expectedStatus}\"`);\n }\n\n const expectedKind = mapKind(beads.type ?? beads.issue_type);\n if (tbdIssue.kind !== expectedKind) {\n fieldIssues.push(`kind mismatch: \"${tbdIssue.kind}\" vs expected \"${expectedKind}\"`);\n }\n\n if ((beads.priority ?? 2) !== tbdIssue.priority) {\n fieldIssues.push(`priority mismatch: ${tbdIssue.priority} vs ${beads.priority ?? 2}`);\n }\n\n // Check labels\n const beadsLabels = new Set(beads.labels ?? []);\n const tbdLabels = new Set(tbdIssue.labels ?? []);\n const missingLabels = [...beadsLabels].filter((l) => !tbdLabels.has(l));\n if (missingLabels.length > 0) {\n fieldIssues.push(`missing labels: ${missingLabels.join(', ')}`);\n }\n\n if (fieldIssues.length > 0) {\n issues.push({\n beadsId: beads.id,\n tbdId,\n issue: fieldIssues.join('; '),\n severity: 'warning',\n });\n } else {\n validCount++;\n }\n }\n\n // Check for orphaned tbd issues (not in Beads)\n const beadsIds = new Set(beadsIssues.map((b) => b.id));\n for (const tbdIssue of tbdIssues) {\n const beadsId = reverseMapping[tbdIssue.id];\n if (beadsId && !beadsIds.has(beadsId)) {\n issues.push({\n beadsId,\n tbdId: tbdIssue.id,\n issue: 'tbd issue has mapping but Beads issue no longer exists',\n severity: 'warning',\n });\n }\n }\n\n // Report results\n const errors = issues.filter((i) => i.severity === 'error');\n const warnings = issues.filter((i) => i.severity === 'warning');\n\n console.log('Validation Results');\n console.log('─'.repeat(60));\n console.log(`Total Beads issues: ${beadsIssues.length}`);\n console.log(`Total tbd issues: ${tbdIssues.length}`);\n console.log(`Valid imports: ${validCount}`);\n console.log(`Errors: ${errors.length}`);\n console.log(`Warnings: ${warnings.length}`);\n console.log('─'.repeat(60));\n\n if (errors.length > 0) {\n console.log('\\nErrors:');\n for (const err of errors) {\n console.log(` ✗ ${err.beadsId}: ${err.issue}`);\n }\n }\n\n if (warnings.length > 0 && options.verbose) {\n console.log('\\nWarnings:');\n for (const warn of warnings) {\n console.log(` ⚠ ${warn.beadsId}: ${warn.issue}`);\n }\n }\n\n console.log();\n if (errors.length === 0 && warnings.length === 0) {\n this.output.success('All imports validated successfully!');\n } else if (errors.length === 0) {\n this.output.warn(`Validation complete with ${warnings.length} warnings`);\n if (!options.verbose) {\n console.log(' Use --verbose to see warning details');\n }\n } else {\n this.output.error(`Validation failed with ${errors.length} errors`);\n }\n\n // Output JSON for programmatic use\n this.output.data({\n valid: validCount,\n errors: errors.length,\n warnings: warnings.length,\n total: beadsIssues.length,\n issues: options.verbose ? issues : undefined,\n });\n }\n\n private async importFromFile(filePath: string, options: ImportOptions): Promise<void> {\n // Check file exists\n try {\n await access(filePath);\n } catch {\n throw new NotFoundError('File', filePath);\n }\n\n if (this.checkDryRun('Would import issues', { file: filePath })) {\n // For dry run, still parse and show what would happen\n const content = await readFile(filePath, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l);\n this.output.info(`Would import ${lines.length} issues from ${filePath}`);\n return;\n }\n\n // Load file content\n const content = await readFile(filePath, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l);\n\n // Parse JSONL\n const beadsIssues: BeadsIssue[] = [];\n for (const line of lines) {\n try {\n const issue = JSON.parse(line) as BeadsIssue;\n if (issue.id && issue.title) {\n beadsIssues.push(issue);\n }\n } catch {\n if (options.verbose) {\n this.output.warn(`Skipping invalid JSON line`);\n }\n }\n }\n\n if (beadsIssues.length === 0) {\n this.output.info('No valid issues found in file');\n return;\n }\n\n // Auto-detect prefix from imported issues and update config if needed\n const detectedPrefix = this.detectPrefixFromIssues(beadsIssues);\n await this.updateConfigPrefixIfNeeded(detectedPrefix);\n\n // Load existing issues and short ID mapping\n const existingIssues = await this.loadExistingIssues();\n const shortIdMapping = await loadIdMapping(this.dataSyncDir);\n\n // Build lookup maps\n const existingByBeadsId = new Map<string, Issue>();\n const existingByShortId = new Map<string, Issue>();\n\n // Build reverse lookup from extensions and from short ID mapping\n for (const issue of existingIssues) {\n const beadsExt = issue.extensions?.beads as { original_id?: string } \| undefined;\n if (beadsExt?.original_id) {\n existingByBeadsId.set(beadsExt.original_id, issue);\n }\n // Also track by short ID\n const ulid = extractUlidFromInternalId(issue.id);\n const shortId = shortIdMapping.ulidToShort.get(ulid);\n if (shortId) {\n existingByShortId.set(shortId, issue);\n }\n }\n\n // Build beads-to-tbd mapping, preserving original short IDs\n // e.g., \"tbd-100\" preserves \"100\" as the short ID\n const beadsTotbd: BeadsTotbdMapping = {};\n\n // First pass: assign IDs to all issues (needed for dependency translation)\n for (const beads of beadsIssues) {\n // Extract the short ID from beads ID (e.g., \"tbd-100\" -> \"100\")\n const shortId = extractShortId(beads.id);\n\n // Check if we already have this issue by beads ID (from previous import)\n const existingByBeads = existingByBeadsId.get(beads.id);\n if (existingByBeads) {\n beadsTotbd[beads.id] = existingByBeads.id;\n continue;\n }\n\n // Check if we already have a mapping for this short ID\n const existingByShort = existingByShortId.get(shortId);\n if (existingByShort) {\n beadsTotbd[beads.id] = existingByShort.id;\n continue;\n }\n\n // Check if the short ID is already in the mapping (collision check)\n if (hasShortId(shortIdMapping, shortId)) {\n // Short ID already exists but for a different issue - generate a new one\n if (options.verbose) {\n this.output.warn(\n `Short ID \"${shortId}\" already exists, generating new ID for ${beads.id}`,\n );\n }\n const internalId = generateInternalId();\n beadsTotbd[beads.id] = internalId;\n // Generate a random short ID since the original is taken\n const ulid = extractUlidFromInternalId(internalId);\n const newShortId = generateUniqueShortId(shortIdMapping);\n addIdMapping(shortIdMapping, ulid, newShortId);\n } else {\n // Create new mapping, preserving the original short ID\n const internalId = generateInternalId();\n beadsTotbd[beads.id] = internalId;\n const ulid = extractUlidFromInternalId(internalId);\n addIdMapping(shortIdMapping, ulid, shortId);\n }\n }\n\n // Second pass: convert and save issues\n let imported = 0;\n let skipped = 0;\n let merged = 0;\n\n for (const beads of beadsIssues) {\n const tbdId = beadsTotbd[beads.id]!;\n const existing = existingByBeadsId.get(beads.id);\n\n if (existing && !options.merge) {\n // Check if Beads is newer\n if (new Date(beads.updated_at) <= new Date(existing.updated_at)) {\n skipped++;\n continue;\n }\n }\n\n const issue = convertIssue(beads, tbdId, beadsTotbd);\n\n if (existing) {\n // Merge: keep higher version, update fields\n issue.version = existing.version + 1;\n merged++;\n } else {\n imported++;\n }\n\n try {\n await writeIssue(this.dataSyncDir, issue);\n } catch (error) {\n if (options.verbose) {\n this.output.warn(`Failed to write issue ${beads.id}: ${(error as Error).message}`);\n }\n }\n }\n\n // Save updated short ID mapping (no separate beads.yml needed - IDs are preserved)\n await saveIdMapping(this.dataSyncDir, shortIdMapping);\n\n const result = { imported, skipped, merged, total: beadsIssues.length };\n\n this.output.data(result, () => {\n this.output.success(`Import complete from ${filePath}`);\n console.log(` New issues: ${imported}`);\n console.log(` Merged: ${merged}`);\n console.log(` Skipped: ${skipped}`);\n });\n }\n\n private async loadExistingIssues(): Promise<Issue[]> {\n try {\n return await listIssues(this.dataSyncDir);\n } catch {\n return [];\n }\n }\n\n /\n Detect the prefix used by beads issues from a file path.\n * Reads the first few issues and extracts the common prefix pattern.\n * Falls back to 'tbd' if no consistent prefix is found.\n /\n private async detectBeadsPrefix(jsonlPath: string): Promise<string> {\n try {\n const content = await readFile(jsonlPath, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l)\n .slice(0, 10); // Sample first 10 issues\n\n const issues: BeadsIssue[] = [];\n for (const line of lines) {\n try {\n const issue = JSON.parse(line) as BeadsIssue;\n if (issue.id) {\n issues.push(issue);\n }\n } catch {\n // Skip invalid lines\n }\n }\n\n return this.detectPrefixFromIssues(issues);\n } catch {\n return 'tbd'; // Default fallback\n }\n }\n\n /\n Detect the prefix used by a list of beads issues.\n * Extracts the common prefix pattern from issue IDs.\n * Falls back to 'tbd' if no consistent prefix is found.\n /\n private detectPrefixFromIssues(issues: BeadsIssue[]): string {\n const prefixes = new Map<string, number>();\n\n for (const issue of issues.slice(0, 10)) {\n // Sample first 10\n if (issue.id) {\n const prefix = extractPrefix(issue.id);\n if (prefix) {\n prefixes.set(prefix, (prefixes.get(prefix) ?? 0) + 1);\n }\n }\n }\n\n // Find the most common prefix\n let maxCount = 0;\n let mostCommonPrefix = 'tbd';\n for (const [prefix, count] of prefixes) {\n if (count > maxCount) {\n maxCount = count;\n mostCommonPrefix = prefix;\n }\n }\n\n return mostCommonPrefix;\n }\n\n /\n Update config prefix if it differs from the detected prefix.\n * Returns true if prefix was updated.\n /\n private async updateConfigPrefixIfNeeded(detectedPrefix: string): Promise<boolean> {\n const cwd = process.cwd();\n try {\n const config = await readConfig(cwd);\n if (config.display.id_prefix !== detectedPrefix) {\n const oldPrefix = config.display.id_prefix;\n config.display.id_prefix = detectedPrefix;\n await writeConfig(cwd, config);\n this.output.info(`Updated ID prefix: ${oldPrefix} → ${detectedPrefix}`);\n return true;\n }\n return false;\n } catch {\n // Config doesn't exist or can't be read - skip update\n return false;\n }\n }\n}\n\nexport const importCommand = new Command('import')\n .description(\n 'Import issues from JSONL file or workspace.\\n' +\n 'For Beads migration, use: tbd setup --from-beads\\n' +\n 'For workspace import, use: tbd import --workspace=<name> or --outbox',\n )\n .argument('[file]', 'JSONL file to import')\n .option('--beads-dir <path>', 'Beads data directory (for --validate)')\n .option('--merge', 'Merge with existing issues instead of skipping duplicates')\n .option('--verbose', 'Show detailed import progress')\n .option('--validate', 'Validate existing import against Beads source')\n // Workspace import options\n .option('--workspace <name>', 'Import from named workspace under .tbd/workspaces/')\n .option('--dir <path>', 'Import from arbitrary directory')\n .option('--outbox', 'Shortcut for --workspace=outbox --clear-on-success')\n .option('--clear-on-success', 'Delete workspace after successful import')\n .action(async (file, options, command) => {\n const handler = new ImportHandler(command);\n await handler.run(file, options);\n });\n","/\n `tbd docs` - Display CLI documentation.\n \n Shows the bundled documentation for tbd CLI.\n * Documentation can be filtered by section.\n \n Note: Doc cache sync functionality has moved to `tbd sync --docs`.\n * See: docs/project/specs/active/plan-2026-01-29-unified-sync-command.md\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { fileURLToPath } from 'node:url';\nimport { dirname, join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError, NotFoundError } from '../lib/errors.js';\nimport { renderMarkdown } from '../lib/output.js';\nimport type { DocSection } from '../../lib/types.js';\nimport GithubSlugger from 'github-slugger';\n\n/\n Get the path to the bundled docs file.\n * The docs file is copied to dist/docs/ during build.\n /\nfunction getDocsPath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // Docs are at dist/docs/tbd-docs.md (same level as the bundle)\n return join(__dirname, 'docs', 'tbd-docs.md');\n}\n\ninterface DocsOptions {\n section?: string;\n list?: boolean;\n all?: boolean;\n}\n\nclass DocsHandler extends BaseCommand {\n async run(topic: string \| undefined, options: DocsOptions): Promise<void> {\n let content: string;\n try {\n content = await readFile(getDocsPath(), 'utf-8');\n } catch {\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // During development: src/cli/commands -> packages/tbd/docs\n const devPath = join(__dirname, '..', '..', '..', 'docs', 'tbd-docs.md');\n content = await readFile(devPath, 'utf-8');\n } catch {\n throw new CLIError('Documentation file not found. Please rebuild the CLI.');\n }\n }\n\n const sections = this.extractSections(content);\n\n // Show comprehensive documentation listing\n if (options.all) {\n await this.showComprehensiveListing();\n return;\n }\n\n // List available sections\n if (options.list) {\n this.output.data(sections, () => {\n const colors = this.output.getColors();\n console.log(colors.bold('Available documentation sections:'));\n console.log('');\n // Calculate max slug length for alignment\n const maxSlugLen = Math.max(...sections.map((s) => s.slug.length));\n for (const section of sections) {\n const paddedSlug = section.slug.padEnd(maxSlugLen);\n console.log(` ${colors.id(paddedSlug)} ${section.title}`);\n }\n console.log('');\n console.log(`Use ${colors.dim('tbd docs <topic>')} to view a specific section.`);\n });\n return;\n }\n\n // Determine which section to show (positional topic takes precedence)\n const sectionQuery = topic ?? options.section;\n\n // Filter by section if specified\n if (sectionQuery) {\n const sectionContent = this.extractSection(content, sections, sectionQuery);\n if (!sectionContent) {\n throw new NotFoundError(\n 'Section',\n `\"${sectionQuery}\" (use --list to see available sections)`,\n );\n }\n content = sectionContent;\n }\n\n // Output the documentation with Markdown colorization\n console.log(renderMarkdown(content, this.ctx.color));\n }\n\n /\n Extract section metadata from the documentation.\n * Sections are top-level headers (## ).\n * Returns title and slugified ID for each section.\n /\n private extractSections(content: string): DocSection[] {\n const sections: DocSection[] = [];\n const lines = content.split('\\n');\n const slugger = new GithubSlugger();\n\n for (const line of lines) {\n if (line.startsWith('## ')) {\n const title = line.slice(3).trim();\n const slug = slugger.slug(title);\n sections.push({ title, slug });\n }\n }\n\n return sections;\n }\n\n /\n Extract a specific section from the documentation.\n * Matches by slug or partial title match.\n * Returns content from the section header to the next section header.\n /\n private extractSection(content: string, sections: DocSection[], query: string): string \| null {\n const lowerQuery = query.toLowerCase();\n\n // Find matching section - first try exact slug match, then partial title match\n const matchedSection =\n sections.find((s) => s.slug === lowerQuery) ??\n sections.find((s) => s.title.toLowerCase().includes(lowerQuery));\n\n if (!matchedSection) {\n return null;\n }\n\n const lines = content.split('\\n');\n let inSection = false;\n const sectionLines: string[] = [];\n\n for (const line of lines) {\n if (line.startsWith('## ')) {\n if (inSection) {\n // End of our section\n break;\n }\n const currentTitle = line.slice(3).trim();\n if (currentTitle === matchedSection.title) {\n inSection = true;\n sectionLines.push(line);\n }\n } else if (inSection) {\n sectionLines.push(line);\n }\n }\n\n if (sectionLines.length === 0) {\n return null;\n }\n\n // Trim trailing empty lines\n while (sectionLines.length > 0) {\n const lastLine = sectionLines[sectionLines.length - 1];\n if (lastLine?.trim() === '') {\n sectionLines.pop();\n } else {\n break;\n }\n }\n\n return sectionLines.join('\\n');\n }\n\n /\n Show a comprehensive listing of all documentation resources organized by purpose.\n /\n private async showComprehensiveListing(): Promise<void> {\n const colors = this.output.getColors();\n\n console.log(colors.bold('=== tbd Documentation Resources ==='));\n console.log('');\n\n // Getting Started\n console.log(colors.bold('Getting Started:'));\n console.log(' tbd Full orientation and project status');\n console.log(' tbd prime Workflow context and guidance');\n console.log(' tbd prime --brief Quick reference (~35 lines)');\n console.log(' tbd --help CLI command reference');\n console.log('');\n\n // Workflows (Shortcuts)\n console.log(colors.bold('Workflows (Shortcuts):'));\n console.log(' tbd shortcut --list List all available shortcuts');\n console.log(' tbd shortcut new-plan-spec Plan a new feature');\n console.log(' tbd shortcut commit-code Commit code properly');\n console.log(' tbd shortcut create-or-update-pr-simple Create a pull request');\n console.log('');\n\n // Guidelines\n console.log(colors.bold('Guidelines (Coding Standards):'));\n console.log(' tbd guidelines --list List all available guidelines');\n console.log(' tbd guidelines typescript-rules TypeScript best practices');\n console.log(' tbd guidelines general-tdd-guidelines Test-driven development');\n console.log(' tbd guidelines golden-testing-guidelines Snapshot/golden testing');\n console.log('');\n\n // Templates\n console.log(colors.bold('Templates:'));\n console.log(' tbd template --list List all available templates');\n console.log(' tbd template plan-spec Feature planning template');\n console.log(' tbd template architecture-doc Architecture document template');\n console.log('');\n\n // Design & Reference\n console.log(colors.bold('Design & Reference:'));\n console.log(' tbd docs --list List documentation sections');\n console.log(' tbd design tbd design document');\n console.log(' tbd closing Session closing protocol');\n console.log('');\n\n // Quick Tips\n console.log(colors.bold('Quick Tips:'));\n console.log(' - Run tbd ready to see what issues are available to work on');\n console.log(' - Run tbd shortcut <name> to get step-by-step instructions');\n console.log(' - Run tbd guidelines <name> to get coding standards');\n console.log(' - Always run tbd sync at the end of a session');\n }\n}\n\nexport const docsCommand = new Command('docs')\n .description('Display CLI documentation (use tbd sync --docs for doc cache sync)')\n .argument('[topic]', 'Topic to display (e.g., \"commands\", \"id-system\")')\n .option('--section <name>', 'Show specific section (e.g., \"commands\", \"workflows\")')\n .option('--list', 'List available sections')\n .option('--all', 'Show comprehensive listing of all documentation resources')\n .action(async (topic: string \| undefined, options: DocsOptions, command: Command) => {\n const handler = new DocsHandler(command);\n await handler.run(topic, options);\n });\n","/\n `tbd closing` - Display the session closing protocol reminder.\n \n Shows the close protocol checklist for completing work.\n * Used by the Claude Code PostToolUse hook after git push.\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { fileURLToPath } from 'node:url';\nimport { dirname, join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError } from '../lib/errors.js';\nimport { renderMarkdown } from '../lib/output.js';\n\n/\n Get the path to the bundled closing file.\n * The file is copied to dist/docs/ during build.\n /\nfunction getCloseProtocolPath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n return join(__dirname, 'docs', 'tbd-closing.md');\n}\n\nclass CloseProtocolHandler extends BaseCommand {\n async run(): Promise<void> {\n let content: string;\n try {\n content = await readFile(getCloseProtocolPath(), 'utf-8');\n } catch {\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n const devPath = join(__dirname, '..', '..', 'docs', 'tbd-closing.md');\n content = await readFile(devPath, 'utf-8');\n } catch {\n // Last fallback: repo-level docs\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n const repoPath = join(__dirname, '..', '..', '..', 'docs', 'tbd-closing.md');\n content = await readFile(repoPath, 'utf-8');\n } catch {\n throw new CLIError('Close protocol file not found. Please rebuild the CLI.');\n }\n }\n }\n\n console.log(renderMarkdown(content, this.ctx.color));\n }\n}\n\nexport const closeProtocolCommand = new Command('closing')\n .description('Display the session closing protocol reminder')\n .action(async (_options: unknown, command: Command) => {\n const handler = new CloseProtocolHandler(command);\n await handler.run();\n });\n","/\n `tbd design` - Display design documentation.\n \n Shows the bundled design documentation for tbd,\n * including architecture, design decisions, and Beads comparison.\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { fileURLToPath } from 'node:url';\nimport { dirname, join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError, NotFoundError } from '../lib/errors.js';\nimport { renderMarkdown } from '../lib/output.js';\nimport type { DocSection } from '../../lib/types.js';\nimport GithubSlugger from 'github-slugger';\n\n/\n Get the path to the bundled design doc file.\n * The design doc is copied to dist/docs/ during build.\n /\nfunction getDesignPath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // Docs are at dist/docs/tbd-design.md (same level as the bundle)\n return join(__dirname, 'docs', 'tbd-design.md');\n}\n\ninterface DesignOptions {\n section?: string;\n list?: boolean;\n}\n\nclass DesignHandler extends BaseCommand {\n async run(topic: string \| undefined, options: DesignOptions): Promise<void> {\n let content: string;\n try {\n content = await readFile(getDesignPath(), 'utf-8');\n } catch {\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // During development: src/cli/commands -> packages/tbd/docs\n const devPath = join(__dirname, '..', '..', '..', 'docs', 'tbd-design.md');\n content = await readFile(devPath, 'utf-8');\n } catch {\n throw new CLIError('Design documentation file not found. Please rebuild the CLI.');\n }\n }\n\n const sections = this.extractSections(content);\n\n // List available sections\n if (options.list) {\n this.output.data(sections, () => {\n const colors = this.output.getColors();\n console.log(colors.bold('Available design documentation sections:'));\n console.log('');\n // Calculate max slug length for alignment\n const maxSlugLen = Math.max(...sections.map((s) => s.slug.length));\n for (const section of sections) {\n const paddedSlug = section.slug.padEnd(maxSlugLen);\n console.log(` ${colors.id(paddedSlug)} ${section.title}`);\n }\n console.log('');\n console.log(`Use ${colors.dim('tbd design <topic>')} to view a specific section.`);\n });\n return;\n }\n\n // Determine which section to show (positional topic takes precedence)\n const sectionQuery = topic ?? options.section;\n\n // Filter by section if specified\n if (sectionQuery) {\n const sectionContent = this.extractSection(content, sections, sectionQuery);\n if (!sectionContent) {\n throw new NotFoundError(\n 'Section',\n `\"${sectionQuery}\" (use --list to see available sections)`,\n );\n }\n content = sectionContent;\n }\n\n // Output the documentation with Markdown colorization\n console.log(renderMarkdown(content, this.ctx.color));\n }\n\n /\n Extract section metadata from the documentation.\n * Sections are top-level headers (## ).\n * Returns title and slugified ID for each section.\n /\n private extractSections(content: string): DocSection[] {\n const sections: DocSection[] = [];\n const lines = content.split('\\n');\n const slugger = new GithubSlugger();\n\n for (const line of lines) {\n if (line.startsWith('## ')) {\n const title = line.slice(3).trim();\n const slug = slugger.slug(title);\n sections.push({ title, slug });\n }\n }\n\n return sections;\n }\n\n /\n Extract a specific section from the documentation.\n * Matches by slug or partial title match.\n * Returns content from the section header to the next section header.\n /\n private extractSection(content: string, sections: DocSection[], query: string): string \| null {\n const lowerQuery = query.toLowerCase();\n\n // Find matching section - first try exact slug match, then partial title match\n const matchedSection =\n sections.find((s) => s.slug === lowerQuery) ??\n sections.find((s) => s.title.toLowerCase().includes(lowerQuery));\n\n if (!matchedSection) {\n return null;\n }\n\n const lines = content.split('\\n');\n let inSection = false;\n const sectionLines: string[] = [];\n\n for (const line of lines) {\n if (line.startsWith('## ')) {\n if (inSection) {\n // End of our section\n break;\n }\n const currentTitle = line.slice(3).trim();\n if (currentTitle === matchedSection.title) {\n inSection = true;\n sectionLines.push(line);\n }\n } else if (inSection) {\n sectionLines.push(line);\n }\n }\n\n if (sectionLines.length === 0) {\n return null;\n }\n\n // Trim trailing empty lines\n while (sectionLines.length > 0) {\n const lastLine = sectionLines[sectionLines.length - 1];\n if (lastLine?.trim() === '') {\n sectionLines.pop();\n } else {\n break;\n }\n }\n\n return sectionLines.join('\\n');\n }\n}\n\nexport const designCommand = new Command('design')\n .description('Display design documentation and Beads comparison')\n .argument('[topic]', 'Topic to display (e.g., \"architecture\", \"tbd-vs-beads\")')\n .option('--section <name>', 'Show specific section')\n .option('--list', 'List available sections')\n .action(async (topic: string \| undefined, options: DesignOptions, command: Command) => {\n const handler = new DesignHandler(command);\n await handler.run(topic, options);\n });\n","/\n `tbd readme` - Display the README.\n \n Shows the bundled README (same as the GitHub landing page).\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { fileURLToPath } from 'node:url';\nimport { dirname, join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError } from '../lib/errors.js';\nimport { renderMarkdown } from '../lib/output.js';\n\n/\n Get the path to the bundled README file.\n * The README is copied to dist/docs/ during build.\n /\nfunction getReadmePath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // README is at dist/docs/README.md (same level as the bundle)\n return join(__dirname, 'docs', 'README.md');\n}\n\nclass ReadmeHandler extends BaseCommand {\n async run(): Promise<void> {\n let content: string;\n try {\n content = await readFile(getReadmePath(), 'utf-8');\n } catch {\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // During development without bundle: src/cli/commands -> repo root\n const devPath = join(__dirname, '..', '..', '..', '..', '..', 'README.md');\n content = await readFile(devPath, 'utf-8');\n } catch {\n // Last fallback: try package-level README\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // From packages/tbd/src/cli/commands -> packages/tbd/README.md\n const pkgPath = join(__dirname, '..', '..', '..', 'README.md');\n content = await readFile(pkgPath, 'utf-8');\n } catch {\n throw new CLIError('README file not found. Please rebuild the CLI.');\n }\n }\n }\n\n // Output the README with Markdown colorization\n console.log(renderMarkdown(content, this.ctx.color));\n }\n}\n\nexport const readmeCommand = new Command('readme')\n .description('Display the README (same as GitHub landing page)')\n .action(async (_options: object, command: Command) => {\n const handler = new ReadmeHandler(command);\n await handler.run();\n });\n","/\n `tbd uninstall` - Remove tbd from a repository.\n \n Removes the .tbd directory, worktree, and optionally the sync branch.\n /\n\nimport { Command } from 'commander';\nimport { rm, access, readdir, stat } from 'node:fs/promises';\nimport { execSync } from 'node:child_process';\nimport { join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { NotInitializedError, CLIError } from '../lib/errors.js';\nimport { readConfig } from '../../file/config.js';\nimport { SYNC_BRANCH } from '../../lib/paths.js';\n\ninterface UninstallOptions {\n confirm?: boolean;\n keepBranch?: boolean;\n removeRemote?: boolean;\n}\n\nclass UninstallHandler extends BaseCommand {\n async run(options: UninstallOptions): Promise<void> {\n const colors = this.output.getColors();\n\n // Check if tbd is initialized\n try {\n await access('.tbd');\n } catch {\n throw new NotInitializedError('No .tbd directory found. Nothing to uninstall.');\n }\n\n // Read config to get branch info\n let config;\n try {\n config = await readConfig('.');\n } catch {\n config = null;\n }\n\n const syncBranch = config?.sync.branch ?? SYNC_BRANCH;\n const remote = config?.sync.remote ?? 'origin';\n const worktreePath = join('.tbd', 'data-sync-worktree');\n\n // Check what exists\n const items: string[] = [];\n\n // Check worktree\n let worktreeExists = false;\n try {\n await access(worktreePath);\n worktreeExists = true;\n const worktreeStats = await this.getDirectoryStats(worktreePath);\n items.push(` - Worktree: ${worktreePath} (${worktreeStats.files} files)`);\n } catch {\n // Worktree doesn't exist\n }\n\n // Check local sync branch\n let localBranchExists = false;\n try {\n execSync(`git rev-parse --verify ${syncBranch}`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n localBranchExists = true;\n if (!options.keepBranch) {\n items.push(` - Local branch: ${syncBranch}`);\n }\n } catch {\n // Branch doesn't exist\n }\n\n // Check remote sync branch\n let remoteBranchExists = false;\n if (options.removeRemote) {\n try {\n execSync(`git rev-parse --verify ${remote}/${syncBranch}`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n remoteBranchExists = true;\n items.push(` - Remote branch: ${remote}/${syncBranch}`);\n } catch {\n // Remote branch doesn't exist\n }\n }\n\n // Count .tbd contents\n const tbdStats = await this.getDirectoryStats('.tbd');\n items.push(` - Directory: .tbd/ (${tbdStats.files} files)`);\n\n // Show what will be removed\n console.log(colors.bold('The following will be removed:'));\n console.log('');\n for (const item of items) {\n console.log(colors.warn(item));\n }\n console.log('');\n\n if (!options.confirm) {\n console.log(`This action is ${colors.bold('irreversible')}.`);\n console.log('');\n console.log(`To confirm, run: ${colors.dim('tbd uninstall --confirm')}`);\n if (!options.keepBranch && localBranchExists) {\n console.log(\n `To keep the sync branch: ${colors.dim('tbd uninstall --confirm --keep-branch')}`,\n );\n }\n if (!options.removeRemote) {\n console.log(\n `To also remove from remote: ${colors.dim('tbd uninstall --confirm --remove-remote')}`,\n );\n }\n return;\n }\n\n // Check dry-run\n if (this.checkDryRun('Would remove tbd from repository', { items })) {\n return;\n }\n\n // Perform uninstall\n this.output.info('Uninstalling tbd...');\n\n // 1. Remove worktree first (git worktree remove)\n if (worktreeExists) {\n try {\n // First try to remove the worktree through git\n execSync(`git worktree remove --force \"${worktreePath}\"`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n console.log(` ${colors.success('✓')} Removed git worktree`);\n } catch {\n // If git worktree remove fails, force delete the directory\n try {\n await rm(worktreePath, { recursive: true, force: true });\n console.log(` ${colors.success('✓')} Removed worktree directory`);\n } catch {\n console.log(` ${colors.warn('⚠')} Could not remove worktree directory`);\n }\n }\n }\n\n // 2. Remove local sync branch\n if (localBranchExists && !options.keepBranch) {\n try {\n execSync(`git branch -D ${syncBranch}`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n console.log(` ${colors.success('✓')} Removed local branch: ${syncBranch}`);\n } catch {\n console.log(` ${colors.warn('⚠')} Could not remove local branch: ${syncBranch}`);\n }\n }\n\n // 3. Remove remote sync branch\n if (remoteBranchExists && options.removeRemote) {\n try {\n execSync(`git push ${remote} --delete ${syncBranch}`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n console.log(` ${colors.success('✓')} Removed remote branch: ${remote}/${syncBranch}`);\n } catch {\n console.log(\n ` ${colors.warn('⚠')} Could not remove remote branch: ${remote}/${syncBranch}`,\n );\n }\n }\n\n // 4. Clean up orphaned worktree references\n try {\n execSync('git worktree prune', {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n } catch {\n // Ignore errors\n }\n\n // 5. Remove .tbd directory\n try {\n await rm('.tbd', { recursive: true, force: true });\n console.log(` ${colors.success('✓')} Removed .tbd directory`);\n } catch {\n throw new CLIError('Failed to remove .tbd directory');\n }\n\n console.log('');\n this.output.success('tbd has been uninstalled from this repository.');\n\n if (options.keepBranch && localBranchExists) {\n console.log('');\n console.log(colors.dim(`Note: The ${syncBranch} branch was preserved. Delete it with:`));\n console.log(colors.dim(` git branch -D ${syncBranch}`));\n }\n\n if (!options.removeRemote && remoteBranchExists) {\n console.log('');\n console.log(\n colors.dim(\n `Note: The remote ${remote}/${syncBranch} branch was preserved. Delete it with:`,\n ),\n );\n console.log(colors.dim(` git push ${remote} --delete ${syncBranch}`));\n }\n }\n\n /\n Get stats about a directory (file count, size).\n /\n private async getDirectoryStats(dirPath: string): Promise<{ files: number; size: number }> {\n let files = 0;\n let size = 0;\n\n const walk = async (dir: string): Promise<void> => {\n try {\n const entries = await readdir(dir, { withFileTypes: true });\n for (const entry of entries) {\n const fullPath = join(dir, entry.name);\n if (entry.isDirectory()) {\n await walk(fullPath);\n } else {\n files++;\n try {\n const stats = await stat(fullPath);\n size += stats.size;\n } catch {\n // Ignore stat errors\n }\n }\n }\n } catch {\n // Ignore errors\n }\n };\n\n await walk(dirPath);\n return { files, size };\n }\n}\n\nexport const uninstallCommand = new Command('uninstall')\n .description('Remove tbd from this repository')\n .option('--confirm', 'Confirm removal (required to proceed)')\n .option('--keep-branch', 'Keep the local sync branch')\n .option('--remove-remote', 'Also remove the remote sync branch')\n .action(async (options, command) => {\n const handler = new UninstallHandler(command);\n await handler.run(options);\n });\n","/\n DocCache - Path-ordered markdown document cache with lookup.\n \n Provides document lookups for the `tbd shortcut` command, supporting\n * both exact matching by filename and fuzzy matching against metadata.\n \n Also provides auto-sync functionality when docs are stale (per spec).\n \n See: docs/project/specs/active/plan-2026-01-22-doc-cache-abstraction.md\n * See: docs/project/specs/active/plan-2026-01-26-configurable-doc-cache-sync.md\n /\n\nimport { readdir, readFile } from 'node:fs/promises';\nimport { join, basename } from 'node:path';\nimport matter from 'gray-matter';\n\nimport { readConfig, readLocalState, findTbdRoot } from './config.js';\nimport { isDocsStale, syncDocsWithDefaults } from './doc-sync.js';\nimport { estimateTokens } from '../lib/format-utils.js';\n\n// =============================================================================\n// Scoring Constants\n// =============================================================================\n\n/* Score for exact filename match (with or without .md extension) /\nexport const SCORE_EXACT_MATCH = 1.0;\n\n/* Score when query is a prefix of the filename /\nexport const SCORE_PREFIX_MATCH = 0.9;\n\n/* Score when filename contains all query words /\nexport const SCORE_CONTAINS_ALL = 0.8;\n\n/* Base score for partial word matches (multiplied by matched/total ratio) /\nexport const SCORE_PARTIAL_BASE = 0.7;\n\n/* Minimum score threshold to return a fuzzy match result /\nexport const SCORE_MIN_THRESHOLD = 0.5;\n\n// =============================================================================\n// Types\n// =============================================================================\n\n/\n Frontmatter fields used for shortcut documents.\n * These are the expected fields in YAML frontmatter for searchability.\n /\nexport interface DocFrontmatter {\n /* Display title for the shortcut /\n title?: string;\n /* Brief description for fuzzy matching and listing /\n description?: string;\n /* Optional categorization tags /\n tags?: string[];\n}\n\n/\n A cached document loaded from the doc path.\n /\nexport interface CachedDoc {\n /* Full filesystem path to the document /\n path: string;\n /* Filename without extension (used for lookups) /\n name: string;\n /* Parsed YAML frontmatter, if present /\n frontmatter?: DocFrontmatter;\n /* Full file content (including frontmatter for output) /\n content: string;\n /* Which directory in the path this doc came from /\n sourceDir: string;\n /* File size in bytes /\n sizeBytes: number;\n /* Estimated token count (based on ~3.5 chars/token) /\n approxTokens: number;\n}\n\n/\n A document match with relevance score.\n /\nexport interface DocMatch {\n /* The matched document /\n doc: CachedDoc;\n /* Match score: 1.0 = exact, lower = fuzzier /\n score: number;\n}\n\n// =============================================================================\n// DocCache Class\n// =============================================================================\n\n/\n Options for loading the doc cache.\n /\nexport interface DocCacheLoadOptions {\n /* If true, suppress auto-sync output (default: false) /\n quiet?: boolean;\n}\n\n/\n Path-ordered markdown document cache.\n \n Loads all .md files from configured paths in order, with earlier paths\n * taking precedence (like shell $PATH). Supports exact lookup by filename\n * and fuzzy search across filename + frontmatter metadata.\n /\nexport class DocCache {\n /* Active docs (first occurrence of each name) /\n private docs: CachedDoc[] = [];\n\n /* All docs including shadowed ones /\n private allDocs: CachedDoc[] = [];\n\n /* Track names we've seen for shadow detection /\n private seenNames = new Set<string>();\n\n /* Whether the cache has been loaded /\n private loaded = false;\n\n /\n Create a new DocCache.\n \n @param paths - Ordered array of directory paths to search (relative to baseDir)\n * @param baseDir - Base directory for resolving relative paths (default: cwd)\n /\n constructor(\n private readonly paths: string[],\n private readonly baseDir: string = process.cwd(),\n ) {}\n\n /\n Load all documents from configured paths.\n \n Reads all .md files from each path in order. Documents with the same\n * name in later paths are shadowed (tracked but not returned by default).\n \n If auto-sync is enabled and docs are stale, triggers a sync first.\n \n @param options - Load options (quiet: suppress auto-sync output)\n /\n async load(options?: DocCacheLoadOptions): Promise<void> {\n if (this.loaded) return;\n\n // Check for auto-sync before loading\n await this.checkAutoSync(options?.quiet ?? false);\n\n for (const relativePath of this.paths) {\n const dirPath = join(this.baseDir, relativePath);\n await this.loadDirectory(dirPath, relativePath);\n }\n\n this.loaded = true;\n }\n\n /\n Check if docs are stale and auto-sync if needed.\n * Respects the quiet option - only silent when explicitly requested.\n \n Uses syncDocsWithDefaults() to ensure auto-sync also picks up new bundled\n * docs from tbd upgrades, not just existing config entries.\n \n @param quiet - If true, suppress sync output\n /\n private async checkAutoSync(quiet: boolean): Promise<void> {\n try {\n // Find tbd root\n const tbdRoot = await findTbdRoot(this.baseDir);\n if (!tbdRoot) return;\n\n // Read config and state\n const config = await readConfig(tbdRoot);\n const state = await readLocalState(tbdRoot);\n\n // Check if auto-sync is enabled and docs are stale\n const autoSyncHours = config.settings?.doc_auto_sync_hours ?? 24;\n if (!isDocsStale(state.last_doc_sync_at, autoSyncHours)) {\n return;\n }\n\n // Use syncDocsWithDefaults to merge bundled defaults with user config\n // This ensures new bundled docs from tbd upgrades are picked up by auto-sync\n await syncDocsWithDefaults(tbdRoot, { quiet });\n } catch {\n // Auto-sync errors are silent - don't interrupt the user\n }\n }\n\n /\n Load documents from a single directory.\n /\n private async loadDirectory(dirPath: string, sourceDir: string): Promise<void> {\n let entries: string[];\n\n try {\n entries = await readdir(dirPath);\n } catch {\n // Directory doesn't exist or isn't readable - skip silently\n // This is expected when paths haven't been initialized yet\n return;\n }\n\n for (const entry of entries) {\n if (!entry.endsWith('.md')) continue;\n\n const filePath = join(dirPath, entry);\n const name = basename(entry, '.md');\n\n try {\n const content = await readFile(filePath, 'utf-8');\n const frontmatter = this.parseFrontmatterData(content);\n const sizeBytes = Buffer.byteLength(content, 'utf-8');\n const approxTokens = estimateTokens(content);\n\n const doc: CachedDoc = {\n path: filePath,\n name,\n frontmatter,\n content,\n sourceDir,\n sizeBytes,\n approxTokens,\n };\n\n // Track all docs\n this.allDocs.push(doc);\n\n // Only add to active docs if not shadowed\n if (!this.seenNames.has(name)) {\n this.docs.push(doc);\n this.seenNames.add(name);\n }\n } catch (error) {\n // Failed to read or parse file - skip with warning context\n console.warn(`Failed to load shortcut ${filePath}: ${(error as Error).message}`);\n }\n }\n }\n\n /\n Parse YAML frontmatter from content and return typed data.\n * Uses gray-matter for consistent frontmatter parsing.\n /\n private parseFrontmatterData(content: string): DocFrontmatter \| undefined {\n if (!matter.test(content)) {\n return undefined;\n }\n\n try {\n const parsed = matter(content).data as Record<string, unknown>;\n return {\n title: typeof parsed.title === 'string' ? parsed.title : undefined,\n description: typeof parsed.description === 'string' ? parsed.description : undefined,\n tags: Array.isArray(parsed.tags)\n ? parsed.tags.filter((t) => typeof t === 'string')\n : undefined,\n };\n } catch {\n // Invalid YAML in frontmatter - return undefined\n return undefined;\n }\n }\n\n /\n Get a document by exact name match.\n \n @param name - Filename to match (with or without .md extension)\n * @returns Match with score SCORE_EXACT_MATCH, or null if not found\n /\n get(name: string): DocMatch \| null {\n // Strip .md extension if present\n const lookupName = name.endsWith('.md') ? name.slice(0, -3) : name;\n\n const doc = this.docs.find((d) => d.name === lookupName);\n if (!doc) return null;\n\n return { doc, score: SCORE_EXACT_MATCH };\n }\n\n /\n Search for documents matching a query.\n \n Performs fuzzy matching against filename, title, and description.\n * Returns matches sorted by score descending.\n \n @param query - Search query string\n * @param limit - Maximum number of results (default: 10)\n * @returns Array of matches sorted by score descending\n /\n search(query: string, limit = 10): DocMatch[] {\n const matches: DocMatch[] = [];\n\n for (const doc of this.docs) {\n const score = this.calculateScore(doc, query);\n if (score >= SCORE_MIN_THRESHOLD) {\n matches.push({ doc, score });\n }\n }\n\n // Sort by score descending, then by name for stability\n matches.sort((a, b) => {\n if (b.score !== a.score) return b.score - a.score;\n return a.doc.name.localeCompare(b.doc.name);\n });\n\n return matches.slice(0, limit);\n }\n\n /\n Calculate relevance score for a document against a query.\n /\n private calculateScore(doc: CachedDoc, query: string): number {\n const queryLower = query.toLowerCase().trim();\n\n // Empty query matches nothing\n if (queryLower.length === 0) {\n return 0;\n }\n\n const nameLower = doc.name.toLowerCase();\n const titleLower = doc.frontmatter?.title?.toLowerCase() ?? '';\n const descLower = doc.frontmatter?.description?.toLowerCase() ?? '';\n\n // Exact match on name\n if (nameLower === queryLower) {\n return SCORE_EXACT_MATCH;\n }\n\n // Prefix match on name\n if (nameLower.startsWith(queryLower)) {\n return SCORE_PREFIX_MATCH;\n }\n\n // Split query into words for multi-word matching\n const queryWords = queryLower.split(/\\s+/).filter((w) => w.length > 0);\n const searchableText = `${nameLower} ${titleLower} ${descLower}`;\n\n // Check if all query words are contained\n const allWordsMatch = queryWords.every((word) => searchableText.includes(word));\n if (allWordsMatch && queryWords.length > 0) {\n return SCORE_CONTAINS_ALL;\n }\n\n // Partial match - count how many words match\n const matchedWords = queryWords.filter((word) => searchableText.includes(word));\n if (matchedWords.length > 0) {\n const ratio = matchedWords.length / queryWords.length;\n return SCORE_PARTIAL_BASE ratio;\n }\n\n return 0;\n }\n\n /*\n List all documents.\n \n @param includeAll - If true, include shadowed documents\n * @returns Array of cached documents\n /\n list(includeAll = false): CachedDoc[] {\n return includeAll ? this.allDocs : this.docs;\n }\n\n /\n Check if a document is shadowed by an earlier path.\n \n @param doc - Document to check\n * @returns True if this doc is shadowed (not the first with this name)\n /\n isShadowed(doc: CachedDoc): boolean {\n const firstDoc = this.docs.find((d) => d.name === doc.name);\n return firstDoc !== doc;\n }\n\n /\n Check if the cache has been loaded.\n /\n isLoaded(): boolean {\n return this.loaded;\n }\n}\n\n// =============================================================================\n// Shortcut Directory Generation\n// =============================================================================\n\n/\n Marker comments for shortcut directory section in skill files.\n * Used for incremental updates without overwriting user content.\n /\nconst SHORTCUT_DIRECTORY_BEGIN = '<!-- BEGIN SHORTCUT DIRECTORY -->';\nconst SHORTCUT_DIRECTORY_END = '<!-- END SHORTCUT DIRECTORY -->';\n\n/\n Build table rows from docs (shared helper for shortcuts and guidelines).\n /\nfunction buildTableRows(docs: CachedDoc[], skipNames: string[] = []): string[] {\n const sortedDocs = [...docs].sort((a, b) => a.name.localeCompare(b.name));\n const rows: string[] = [];\n\n for (const doc of sortedDocs) {\n if (skipNames.includes(doc.name)) {\n continue;\n }\n\n const name = doc.name;\n const description = doc.frontmatter?.description ?? '';\n const escapedDescription = description.replace(/\\\|/g, '\\\\\|');\n\n rows.push(`\| ${name} \| ${escapedDescription} \|`);\n }\n\n return rows;\n}\n\n/\n Generate a formatted markdown directory of shortcuts and guidelines.\n \n The output includes:\n * 1. Marker comments for incremental updates\n * 2. Available Shortcuts section with name and description\n * 3. Available Guidelines section with name and description (if provided)\n \n @param shortcuts - Array of shortcut CachedDoc objects\n * @param guidelines - Optional array of guideline CachedDoc objects\n * @returns Formatted markdown string with shortcuts and guidelines directory\n \n @example\n * const directory = generateShortcutDirectory(shortcutDocs, guidelineDocs);\n * // Returns:\n * // <!-- BEGIN SHORTCUT DIRECTORY -->\n * // ## Available Shortcuts\n * // \| Name \| Description \|\n * // \| --- \| --- \|\n * // \| commit-code \| Run pre-commit checks, review changes, and commit code \|\n * // ...\n * // ## Available Guidelines\n * // \| Name \| Description \|\n * // \| --- \| --- \|\n * // \| typescript-rules \| TypeScript coding rules and best practices \|\n * // ...\n * // <!-- END SHORTCUT DIRECTORY -->\n /\nexport function generateShortcutDirectory(\n shortcuts: CachedDoc[],\n guidelines: CachedDoc[] = [],\n): string {\n const lines: string[] = [SHORTCUT_DIRECTORY_BEGIN];\n\n // Shortcuts section\n const shortcutRows = buildTableRows(shortcuts, ['skill', 'skill-brief', 'shortcut-explanation']);\n\n lines.push('## Available Shortcuts');\n lines.push('');\n lines.push('Run `tbd shortcut <name>` to use any of these shortcuts:');\n lines.push('');\n\n if (shortcutRows.length === 0) {\n lines.push('No shortcuts available. Create shortcuts in `.tbd/docs/shortcuts/standard/`.');\n } else {\n lines.push('\| Name \| Description \|');\n lines.push('\| --- \| --- \|');\n lines.push(...shortcutRows);\n }\n\n // Guidelines section (if provided)\n if (guidelines.length > 0) {\n const guidelineRows = buildTableRows(guidelines);\n\n if (guidelineRows.length > 0) {\n lines.push('');\n lines.push('## Available Guidelines');\n lines.push('');\n lines.push('Run `tbd guidelines <name>` to apply any of these guidelines:');\n lines.push('');\n lines.push('\| Name \| Description \|');\n lines.push('\| --- \| --- \|');\n lines.push(...guidelineRows);\n }\n }\n\n lines.push('');\n lines.push(SHORTCUT_DIRECTORY_END);\n\n return lines.join('\\n');\n}\n","/\n `tbd prime` - Output dashboard and workflow context for AI agents.\n \n Designed to be called by hooks at session start and before context compaction\n * to ensure agents remember the tbd workflow.\n \n See: tbd-design.md §6.4.3 The tbd prime Command\n /\n\nimport { Command } from 'commander';\nimport { readFile, access } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport { fileURLToPath } from 'node:url';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { findTbdRoot, readConfig, hasSeenWelcome, markWelcomeSeen } from '../../file/config.js';\nimport { stripFrontmatter } from '../../utils/markdown-utils.js';\nimport { VERSION } from '../lib/version.js';\nimport { listIssues } from '../../file/storage.js';\nimport {\n resolveDataSyncDir,\n DEFAULT_SHORTCUT_PATHS,\n DEFAULT_GUIDELINES_PATHS,\n} from '../../lib/paths.js';\nimport { getClaudePaths } from '../../lib/integration-paths.js';\nimport type { Issue } from '../../lib/types.js';\nimport { DocCache, generateShortcutDirectory } from '../../file/doc-cache.js';\n\ninterface PrimeOptions {\n export?: boolean;\n brief?: boolean;\n}\n\n/\n Get the path to the bundled SKILL.md file.\n /\nfunction getSkillPath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // Docs are at dist/docs/SKILL.md (same level as the bundle)\n return join(__dirname, 'docs', 'SKILL.md');\n}\n\n/\n Load the skill content from the bundled SKILL.md file with fallbacks.\n * This is exported for use by setup.ts for skill installation.\n /\nexport async function loadSkillContent(): Promise<string> {\n // Try bundled location first (dist/docs/SKILL.md)\n try {\n return await readFile(getSkillPath(), 'utf-8');\n } catch {\n // Fallback: compose from source files during development\n }\n\n // Dev fallback: compose SKILL.md from source files on-the-fly\n // This mirrors what copy-docs.mjs does at build time\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // From packages/tbd/src/cli/commands/ go to packages/tbd/docs/\n const docsDir = join(__dirname, '..', '..', '..', 'docs');\n const headerPath = join(docsDir, 'install', 'claude-header.md');\n const skillPath = join(docsDir, 'shortcuts', 'system', 'skill.md');\n\n const header = await readFile(headerPath, 'utf-8');\n const skill = await readFile(skillPath, 'utf-8');\n return header + skill;\n } catch {\n // If source files not found, throw error\n throw new Error('SKILL.md content file not found. Please rebuild the CLI.');\n }\n}\n\n/\n Load the prime content from the bundled SKILL.md file with fallbacks.\n * Strips frontmatter and adjusts the header for prime output.\n /\nexport async function loadPrimeContent(): Promise<string> {\n const skillContent = await loadSkillContent();\n const content = stripFrontmatter(skillContent);\n\n // Replace header for prime output context\n return content.replace(/^# tbd Workflow\\b/, '# tbd Workflow Context');\n}\n\n/\n Brief prime content for constrained context windows (~35 lines).\n * Includes core workflow, session protocol, and key commands.\n /\nconst BRIEF_SKILL_CONTENT = `## Core Workflow\n\n- Track all task work as issues using tbd\n- Check \\`tbd ready\\` for available work\n- Run \\`tbd sync\\` at session end\n\n## SESSION CLOSING (REQUIRED)\n\n1. git add + git commit\n2. git push\n3. gh pr checks <PR> --watch # WAIT for completion\n4. tbd close/update <id>\n5. tbd sync\n\n## Quick Reference\n\ntbd ready Show issues ready to work\ntbd show <id> View issue details\ntbd create \"title\" Create new issue\ntbd close <id> Mark issue complete\ntbd sync Sync with remote\n\nFor full orientation: tbd prime\n\nIMPORTANT: Use tbd to help the user. Do NOT tell the user to run tbd commands.`;\n\n/\n Value proposition content for not-initialized state.\n /\nconst VALUE_PROPOSITION = `## WHAT tbd IS\n\ntbd is an AI-agent-optimized issue tracker and workflow assistant providing:\n1. Issue Tracking - Track tasks, bugs, features as git-native \"beads\"\n2. Coding Guidelines - Best practices for TypeScript, Python, testing\n3. Spec-Driven Workflows - Write specs, then implement using issues to track each part\n4. Convenience Shortcuts - Pre-built processes for common tasks (commit, PR, review)\n\n## SETUP (AGENT ACTION REQUIRED)\n\ntbd is not yet initialized. To set it up, run:\n\n tbd setup --auto --prefix=<name> # REQUIRES prefix for new projects\n tbd setup --auto # If .tbd/ already exists (prefix already set)\n\nCRITICAL: Never guess a prefix. Always ask the user what prefix they want.\nDo NOT tell the user to run these commands — run them yourself on their behalf.\n\nAfter setup, run 'tbd' again to get project status and workflow guidance.`;\n\nclass PrimeHandler extends BaseCommand {\n async run(options: PrimeOptions): Promise<void> {\n const cwd = process.cwd();\n\n // Find tbd root (supports running from subdirectories)\n const tbdRoot = await findTbdRoot(cwd);\n\n // Not initialized - show setup instructions with value proposition\n if (!tbdRoot) {\n await this.renderNotInitialized();\n return;\n }\n\n // Check for Beads installation alongside tbd and warn\n const beadsWarning = await this.checkForBeads(tbdRoot);\n if (beadsWarning) {\n console.log(beadsWarning);\n console.log('');\n }\n\n // Brief mode: dynamic status + abbreviated skill content\n if (options.brief) {\n await this.renderBriefOrientation(tbdRoot);\n return;\n }\n\n // Check for custom override file\n const customPrimePath = join(tbdRoot, '.tbd', 'PRIME.md');\n\n // If --export, always show default content\n if (!options.export) {\n try {\n await access(customPrimePath);\n const customContent = await readFile(customPrimePath, 'utf-8');\n console.log(customContent);\n return;\n } catch {\n // No custom file, use default full orientation\n }\n }\n\n // Default: full orientation (dynamic status + full skill content)\n await this.renderFullOrientation(tbdRoot);\n }\n\n /\n Render dynamic status section (installation + project status).\n /\n private async renderDynamicStatus(tbdRoot: string): Promise<void> {\n const colors = this.output.getColors();\n\n console.log(`${colors.bold('tbd')} v${VERSION}`);\n console.log('');\n\n // === INSTALLATION ===\n console.log(colors.bold('=== INSTALLATION ==='));\n console.log(`${colors.success('✓')} tbd installed (v${VERSION})`);\n console.log(`${colors.success('✓')} Initialized in this repo`);\n\n // Check if hooks are installed\n const hooksInstalled = await this.checkHooksInstalled(tbdRoot);\n if (hooksInstalled) {\n console.log(`${colors.success('✓')} Hooks installed`);\n } else {\n console.log(`${colors.dim('✗')} Hooks not installed (run: tbd setup --auto)`);\n }\n console.log('');\n\n // === PROJECT STATUS ===\n console.log(colors.bold('=== PROJECT STATUS ==='));\n try {\n const config = await readConfig(tbdRoot);\n console.log(`Repository: ${config.display.id_prefix \|\| 'unknown'}`);\n } catch {\n console.log('Repository: unknown');\n }\n\n // Get issue stats\n const stats = await this.getIssueStats(tbdRoot);\n if (stats) {\n const statusInfo = `${stats.open} open (${stats.inProgress} in_progress)`;\n const blockedInfo = stats.blocked > 0 ? ` \| ${stats.blocked} blocked` : '';\n console.log(`Issues: ${statusInfo}${blockedInfo}`);\n } else {\n console.log('Issues: (none)');\n }\n console.log('');\n }\n\n /\n Render full orientation: dynamic status + full skill content.\n * If the user hasn't seen the welcome message, add a welcome banner.\n /\n private async renderFullOrientation(tbdRoot: string): Promise<void> {\n // Dynamic status\n await this.renderDynamicStatus(tbdRoot);\n\n // Check if this is the user's first time\n const isNewUser = !(await hasSeenWelcome(tbdRoot));\n if (isNewUser) {\n await this.renderWelcomeBanner(tbdRoot);\n }\n\n // Full skill content\n const primeContent = await loadPrimeContent();\n console.log(primeContent);\n\n // Shortcut directory\n const shortcutDir = await this.getShortcutDirectory(tbdRoot);\n if (shortcutDir) {\n console.log('');\n console.log(shortcutDir);\n }\n\n console.log('');\n console.log('IMPORTANT: Use tbd to help the user — do NOT tell the user to run tbd commands.');\n console.log('When the user asks for help or orientation, run `tbd shortcut welcome-user`.');\n }\n\n /\n Render brief orientation: dynamic status + abbreviated skill content.\n /\n private async renderBriefOrientation(tbdRoot: string): Promise<void> {\n // Dynamic status\n await this.renderDynamicStatus(tbdRoot);\n\n // Abbreviated skill content\n console.log(BRIEF_SKILL_CONTENT);\n }\n\n /\n Render output for not initialized state with value proposition.\n /\n private async renderNotInitialized(): Promise<void> {\n const colors = this.output.getColors();\n\n console.log(`${colors.bold('tbd')} v${VERSION}`);\n console.log('');\n console.log(colors.bold('=== NOT INITIALIZED ==='));\n console.log(`${colors.warn('✗')} tbd not initialized in this repository`);\n console.log('');\n\n // Value proposition\n console.log(VALUE_PROPOSITION);\n }\n\n /\n Render a welcome banner for first-time users.\n * Instructs the agent to show the welcome message.\n /\n private async renderWelcomeBanner(tbdRoot: string): Promise<void> {\n const colors = this.output.getColors();\n\n console.log(colors.bold('=== WELCOME (FIRST TIME) ==='));\n console.log('');\n console.log('AGENT INSTRUCTION:');\n console.log('1. Welcome the user! Run `tbd shortcut welcome-user` and follow its');\n console.log(' instructions to give the user a warm orientation.');\n console.log('2. Show the user examples of what THEY can say (e.g. \"there\\'s a bug\",');\n console.log(' \"let\\'s plan a feature\") — do NOT show them tbd CLI commands.');\n console.log(\"3. You use tbd on the user's behalf. The user talks to you naturally;\");\n console.log(' you translate their requests into tbd actions.');\n console.log('');\n\n // Mark welcome as seen\n try {\n await markWelcomeSeen(tbdRoot);\n } catch {\n // Non-critical\n }\n }\n\n /\n Check if Claude Code hooks are installed in project-local .claude/settings.json.\n /\n private async checkHooksInstalled(projectRoot: string): Promise<boolean> {\n const { settings } = getClaudePaths(projectRoot);\n try {\n const content = await readFile(settings, 'utf-8');\n return content.includes('tbd');\n } catch {\n return false;\n }\n }\n\n /\n Get issue statistics.\n /\n private async getIssueStats(tbdRoot: string): Promise<{\n open: number;\n inProgress: number;\n blocked: number;\n } \| null> {\n try {\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n const issues: Issue[] = await listIssues(dataSyncDir);\n\n let open = 0;\n let inProgress = 0;\n const blockedIds = new Set<string>();\n\n // Find blocked issues\n // \"blocks\" dependency: issue A with {type: 'blocks', target: B} means A blocks B\n // B is blocked only if A (the blocker) is not closed\n for (const issue of issues) {\n for (const dep of issue.dependencies) {\n if (dep.type === 'blocks') {\n // Only count target as blocked if the blocker (this issue) is not closed\n if (issue.status !== 'closed') {\n blockedIds.add(dep.target);\n }\n }\n }\n }\n\n // Count by status\n for (const issue of issues) {\n if (issue.status === 'open') {\n open++;\n } else if (issue.status === 'in_progress') {\n inProgress++;\n }\n }\n\n return { open, inProgress, blocked: blockedIds.size };\n } catch {\n return null;\n }\n }\n\n /\n Check if Beads is installed alongside tbd and return a warning message.\n * This helps users who are migrating from Beads to tbd.\n /\n private async checkForBeads(cwd: string): Promise<string \| null> {\n const beadsDir = join(cwd, '.beads');\n try {\n await access(beadsDir);\n // .beads/ exists - warn the agent\n return `⚠️ WARNING: A .beads/ directory was detected alongside .tbd/\n When asked to use beads, use \\`tbd\\` commands, NOT \\`bd\\` commands.\n To complete migration: tbd setup beads --disable --confirm`;\n } catch {\n // No .beads/ directory, no warning needed\n return null;\n }\n }\n\n /\n Generate the shortcut and guidelines directory on-the-fly.\n /\n private async getShortcutDirectory(tbdRoot: string): Promise<string \| null> {\n // Load shortcuts\n const shortcutCache = new DocCache(DEFAULT_SHORTCUT_PATHS, tbdRoot);\n await shortcutCache.load({ quiet: this.ctx.quiet });\n const shortcuts = shortcutCache.list();\n\n // Load guidelines\n const guidelinesCache = new DocCache(DEFAULT_GUIDELINES_PATHS, tbdRoot);\n await guidelinesCache.load({ quiet: this.ctx.quiet });\n const guidelines = guidelinesCache.list();\n\n // If no docs loaded, skip directory\n if (shortcuts.length === 0 && guidelines.length === 0) {\n return null;\n }\n\n return generateShortcutDirectory(shortcuts, guidelines);\n }\n}\n\nexport const primeCommand = new Command('prime')\n .description('Show full orientation with workflow context (default when running `tbd`)')\n .option('--export', 'Output default content (ignores PRIME.md override)')\n .option('--brief', 'Output abbreviated orientation (~35 lines) for constrained contexts')\n .action(async (options: PrimeOptions, command) => {\n const handler = new PrimeHandler(command);\n await handler.run(options);\n });\n","/\n `tbd skill` - Output AI agent skill file content.\n \n See: tbd-design.md §Prime-First Design\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport { fileURLToPath } from 'node:url';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { findTbdRoot } from '../../file/config.js';\nimport { DocCache, generateShortcutDirectory } from '../../file/doc-cache.js';\nimport { DEFAULT_SHORTCUT_PATHS, DEFAULT_GUIDELINES_PATHS } from '../../lib/paths.js';\n\ninterface SkillOptions {\n brief?: boolean;\n}\n\n/\n Get the path to a bundled doc file.\n /\nfunction getDocPath(filename: string): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // Docs are at dist/docs/ (same level as the bundle)\n return join(__dirname, 'docs', filename);\n}\n\n/\n Load a doc file content.\n /\nasync function loadDocContent(filename: string): Promise<string> {\n // Try bundled location first\n try {\n return await readFile(getDocPath(filename), 'utf-8');\n } catch {\n // Fallback for development\n }\n\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // During development: src/cli/commands -> packages/tbd/docs\n const devPath = join(__dirname, '..', '..', '..', 'docs', filename);\n return await readFile(devPath, 'utf-8');\n } catch {\n throw new Error(`${filename} not found. Please rebuild the CLI.`);\n }\n}\n\nclass SkillHandler extends BaseCommand {\n async run(options: SkillOptions): Promise<void> {\n await this.execute(async () => {\n if (options.brief) {\n // Brief mode: just output skill-brief.md\n const content = await loadDocContent('skill-brief.md');\n console.log(content);\n return;\n }\n\n // Full mode: compose header + skill.md + shortcut directory\n const content = await this.composeFullSkill();\n console.log(content);\n }, 'Failed to output skill content');\n }\n\n /\n Compose the full skill output by combining:\n * 1. Claude header (YAML frontmatter)\n * 2. Base skill content (skill.md from shortcuts/system)\n * 3. Shortcut directory (from cache or generated on-the-fly)\n /\n private async composeFullSkill(): Promise<string> {\n // Load header (YAML frontmatter for Claude)\n const header = await loadDocContent('install/claude-header.md');\n\n // Load base skill content\n const baseSkill = await loadDocContent('shortcuts/system/skill.md');\n\n // Get shortcut directory\n const directory = await this.getShortcutDirectory();\n\n // Compose: header + base skill + (optional) shortcut directory\n let result = header + baseSkill;\n if (directory) {\n result = result.trimEnd() + '\\n\\n' + directory;\n }\n\n return result;\n }\n\n /\n Generate the shortcut directory on-the-fly.\n /\n private async getShortcutDirectory(): Promise<string \| null> {\n // Try to find tbd root (may not be initialized)\n const tbdRoot = await findTbdRoot(process.cwd());\n if (!tbdRoot) {\n return null;\n }\n\n // Load shortcuts\n const shortcutCache = new DocCache(DEFAULT_SHORTCUT_PATHS, tbdRoot);\n await shortcutCache.load({ quiet: this.ctx.quiet });\n const shortcuts = shortcutCache.list();\n\n // Load guidelines\n const guidelinesCache = new DocCache(DEFAULT_GUIDELINES_PATHS, tbdRoot);\n await guidelinesCache.load({ quiet: this.ctx.quiet });\n const guidelines = guidelinesCache.list();\n\n // If no docs loaded, skip directory\n if (shortcuts.length === 0 && guidelines.length === 0) {\n return null;\n }\n\n return generateShortcutDirectory(shortcuts, guidelines);\n }\n}\n\nexport const skillCommand = new Command('skill')\n .description('Output AI agent skill file content')\n .option('--brief', 'Output condensed workflow rules only')\n .action(async (options: SkillOptions, command) => {\n const handler = new SkillHandler(command);\n await handler.run(options);\n });\n","/\n Agent instruction prompts for document commands.\n \n These prompts are displayed when tbd outputs a document to help\n * the agent understand how to use the content.\n /\n\n/\n Header shown when outputting a shortcut document.\n /\nexport const SHORTCUT_AGENT_HEADER =\n 'Agent instructions: You have activated a shortcut with task instructions. If a user has asked you to do a task that requires this work, follow the instructions below carefully.';\n\n/\n Header shown when outputting a guidelines document.\n /\nexport const GUIDELINES_AGENT_HEADER =\n 'Agent instructions: You have activated a guidelines document. If a user has asked you to apply these rules, read them carefully and apply them. Use beads to track each step.';\n","/\n Add external documentation to the tbd doc cache.\n \n Uses the shared github-fetch utility for URL conversion and fetching.\n * Handles doc-specific concerns: content validation, file writing, and\n * atomic config updates.\n /\n\nimport { join, dirname } from 'node:path';\nimport { mkdir } from 'node:fs/promises';\nimport { writeFile } from 'atomically';\n\nimport { readConfig, writeConfig } from './config.js';\nimport { githubBlobToRawUrl, fetchWithGhFallback } from './github-fetch.js';\nimport { TBD_DOCS_DIR } from '../lib/paths.js';\n\n// =============================================================================\n// Types\n// =============================================================================\n\n/\n The type of document being added.\n /\nexport type DocType = 'guideline' \| 'shortcut' \| 'template';\n\n/\n Options for adding a document.\n /\nexport interface AddDocOptions {\n /* URL to fetch the document from /\n url: string;\n /* Name for the document (without .md extension) /\n name: string;\n /* Type of document /\n docType: DocType;\n}\n\n/\n Result of adding a document.\n /\nexport interface AddDocResult {\n /* The destination path relative to .tbd/docs/ /\n destPath: string;\n /* The raw URL used to fetch the content /\n rawUrl: string;\n /* Whether gh CLI was used as fallback /\n usedGhCli: boolean;\n}\n\n// =============================================================================\n// Content Validation\n// =============================================================================\n\n/\n Validate that fetched content looks like a reasonable markdown document.\n \n @throws If content fails sanity checks\n /\nexport function validateDocContent(content: string, name: string): void {\n if (!content \|\| content.trim().length === 0) {\n throw new Error(`Fetched content for \"${name}\" is empty`);\n }\n\n if (content.length < 10) {\n throw new Error(`Fetched content for \"${name}\" is too short (${content.length} chars)`);\n }\n\n // Check for HTML error pages\n if (content.trimStart().startsWith('<!DOCTYPE') \|\| content.trimStart().startsWith('<html')) {\n throw new Error(\n `Fetched content for \"${name}\" appears to be an HTML page, not a markdown document`,\n );\n }\n\n // Check for binary content (high ratio of non-printable characters)\n const nonPrintable = content.split('').filter((c) => {\n const code = c.charCodeAt(0);\n return code < 32 && code !== 9 && code !== 10 && code !== 13;\n }).length;\n if (nonPrintable / content.length > 0.1) {\n throw new Error(`Fetched content for \"${name}\" appears to be binary, not a text document`);\n }\n}\n\n// =============================================================================\n// Doc Type to Path Mapping\n// =============================================================================\n\n/\n Get the destination subdirectory for a doc type.\n /\nexport function getDocTypeSubdir(docType: DocType): string {\n switch (docType) {\n case 'guideline':\n return 'guidelines';\n case 'shortcut':\n return 'shortcuts/custom';\n case 'template':\n return 'templates';\n }\n}\n\n// =============================================================================\n// Main Add Function\n// =============================================================================\n\n/\n Add an external document to the tbd doc cache.\n \n This function:\n * 1. Converts GitHub blob URLs to raw URLs\n * 2. Fetches the content (with gh CLI fallback on 403)\n * 3. Validates the content looks like markdown\n * 4. Writes the file to .tbd/docs/{type}/{name}.md\n * 5. Atomically updates the config to include the new source\n \n @throws If fetching, validation, or config update fails\n /\nexport async function addDoc(tbdRoot: string, options: AddDocOptions): Promise<AddDocResult> {\n const { url, name, docType } = options;\n\n // Normalize name (strip .md if provided)\n const cleanName = name.endsWith('.md') ? name.slice(0, -3) : name;\n const filename = `${cleanName}.md`;\n const subdir = getDocTypeSubdir(docType);\n const destPath = `${subdir}/${filename}`;\n const rawUrl = githubBlobToRawUrl(url);\n\n // Fetch content\n const { content, usedGhCli } = await fetchWithGhFallback(url);\n\n // Validate content\n validateDocContent(content, cleanName);\n\n // Write file to .tbd/docs/{subdir}/{name}.md\n const fullPath = join(tbdRoot, TBD_DOCS_DIR, destPath);\n await mkdir(dirname(fullPath), { recursive: true });\n await writeFile(fullPath, content);\n\n // Atomically update config\n const config = await readConfig(tbdRoot);\n config.docs_cache ??= { files: {}, lookup_path: [] };\n config.docs_cache.files ??= {};\n config.docs_cache.files[destPath] = rawUrl;\n\n // Ensure the lookup_path includes the subdir\n const lookupDir = `.tbd/docs/${subdir}`;\n if (!config.docs_cache.lookup_path.includes(lookupDir)) {\n config.docs_cache.lookup_path.push(lookupDir);\n }\n\n await writeConfig(tbdRoot, config);\n\n return { destPath, rawUrl, usedGhCli };\n}\n","/\n `tbd shortcut` - Find and output documentation shortcuts.\n \n Shortcuts are reusable instruction templates for common tasks.\n * Give a name or description and tbd will find the matching shortcut.\n \n See: docs/project/specs/active/plan-2026-01-22-doc-cache-abstraction.md\n /\n\nimport { Command } from 'commander';\nimport pc from 'picocolors';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { SHORTCUT_AGENT_HEADER } from '../lib/doc-prompts.js';\nimport { requireInit, CLIError } from '../lib/errors.js';\nimport { DocCache, SCORE_PREFIX_MATCH } from '../../file/doc-cache.js';\nimport { addDoc } from '../../file/doc-add.js';\nimport { readConfig } from '../../file/config.js';\nimport { DEFAULT_SHORTCUT_PATHS } from '../../lib/paths.js';\nimport { truncate } from '../../lib/truncate.js';\nimport { formatDocSize } from '../../lib/format-utils.js';\nimport { getTerminalWidth } from '../lib/output.js';\n\ninterface ShortcutOptions {\n list?: boolean;\n all?: boolean;\n refresh?: boolean;\n quiet?: boolean;\n category?: string;\n add?: string;\n name?: string;\n}\n\n/\n Shortcut categories for filtering.\n * Categories are inferred from shortcut names.\n /\ntype ShortcutCategory = 'planning' \| 'implementation' \| 'quality' \| 'shipping';\n\n/\n Infer category from shortcut name.\n * Returns undefined if no category matches.\n /\nfunction inferCategory(name: string): ShortcutCategory \| undefined {\n // Planning: specs, architecture, research, planning docs\n if (\n name.includes('plan-spec') \|\|\n name.includes('architecture') \|\|\n name.includes('research') \|\|\n name.includes('validation-spec') \|\|\n name.includes('implementation-spec') \|\|\n name.includes('beads-from-spec') \|\|\n name.includes('update-spec') \|\|\n name.includes('refine-spec') \|\|\n name.includes('revise-')\n ) {\n return 'planning';\n }\n\n // Implementation: coding, implementing\n if (name.includes('implement-') \|\| name.includes('coding-spike')) {\n return 'implementation';\n }\n\n // Quality: review, testing, precommit, cleanup\n if (\n name.includes('review-') \|\|\n name.includes('precommit') \|\|\n name.includes('cleanup-') \|\|\n name.includes('validation-plan')\n ) {\n return 'quality';\n }\n\n // Shipping: commit, PR, merge\n if (name.includes('commit-') \|\| name.includes('pr-') \|\| name.includes('merge-')) {\n return 'shipping';\n }\n\n return undefined;\n}\n\nclass ShortcutHandler extends BaseCommand {\n async run(query: string \| undefined, options: ShortcutOptions): Promise<void> {\n await this.execute(async () => {\n // Add mode\n if (options.add) {\n if (!options.name) {\n throw new CLIError('--name is required when using --add');\n }\n const tbdRoot = await requireInit();\n console.log(`Adding shortcut: ${options.name}`);\n console.log(` URL: ${options.add}`);\n const result = await addDoc(tbdRoot, {\n url: options.add,\n name: options.name,\n docType: 'shortcut',\n });\n if (result.usedGhCli) {\n console.log(pc.dim(' (fetched via gh CLI due to direct access restriction)'));\n }\n console.log(pc.green(` Added to ${result.destPath}`));\n console.log(pc.green(` Config updated with source: ${result.rawUrl}`));\n console.log('');\n console.log('Run `tbd shortcut --list` to verify.');\n return;\n }\n\n // Get tbd root (supports running from subdirectories)\n const tbdRoot = await requireInit();\n\n // Read config to get lookup paths (fall back to defaults)\n const config = await readConfig(tbdRoot);\n const lookupPaths = config.docs_cache?.lookup_path ?? DEFAULT_SHORTCUT_PATHS;\n\n // Create and load the doc cache with proper base directory\n const cache = new DocCache(lookupPaths, tbdRoot);\n await cache.load({ quiet: this.ctx.quiet });\n\n // Refresh mode: regenerate cache and update skill files\n if (options.refresh) {\n await this.handleRefresh(cache, tbdRoot, options.quiet);\n return;\n }\n\n // List mode\n if (options.list \|\| options.category) {\n await this.handleList(cache, options.all, options.category);\n return;\n }\n\n // No query: show explanation + help\n if (!query) {\n await this.handleNoQuery(cache);\n return;\n }\n\n // Query provided: try exact match first, then fuzzy\n await this.handleQuery(cache, query);\n }, 'Failed to find shortcut');\n }\n\n /\n Handle --refresh mode: no-op since shortcuts are now generated on-the-fly.\n * Kept for backward compatibility.\n /\n private async handleRefresh(cache: DocCache, _tbdRoot: string, quiet?: boolean): Promise<void> {\n const docs = cache.list();\n\n // Count shortcuts (excluding system docs)\n const shortcutCount = docs.filter(\n (d) => d.name !== 'skill' && d.name !== 'skill-brief' && d.name !== 'shortcut-explanation',\n ).length;\n\n if (!quiet) {\n if (this.ctx.json) {\n this.output.data({\n refreshed: true,\n shortcutCount,\n message: 'Shortcuts are now generated on-the-fly (no cache)',\n });\n } else {\n console.log(`${shortcutCount} shortcut(s) available (generated on-the-fly)`);\n }\n }\n }\n\n /\n Handle --list mode: show all available shortcuts.\n /\n private async handleList(\n cache: DocCache,\n includeAll?: boolean,\n category?: string,\n ): Promise<void> {\n let docs = cache.list(includeAll);\n\n // Filter by category if specified\n if (category) {\n docs = docs.filter((d) => {\n const docCategory = inferCategory(d.name);\n return docCategory === category;\n });\n }\n\n if (this.ctx.json) {\n this.output.data(\n docs.map((d) => ({\n name: d.name,\n title: d.frontmatter?.title,\n description: d.frontmatter?.description,\n path: d.path,\n sourceDir: d.sourceDir,\n sizeBytes: d.sizeBytes,\n approxTokens: d.approxTokens,\n shadowed: cache.isShadowed(d),\n })),\n );\n return;\n }\n\n if (docs.length === 0) {\n console.log('No shortcuts found.');\n console.log('Run `tbd setup --auto` to install built-in shortcuts.');\n return;\n }\n\n const maxWidth = getTerminalWidth();\n\n for (const doc of docs) {\n const shadowed = cache.isShadowed(doc);\n const name = doc.name;\n const title = doc.frontmatter?.title;\n const description = doc.frontmatter?.description ?? this.extractFallbackText(doc.content);\n\n if (shadowed) {\n // Muted style for shadowed entries\n const line = `${name} (${doc.sourceDir}) [shadowed]`;\n console.log(pc.dim(truncate(line, maxWidth)));\n } else {\n // Line 1: name (bold) + size/token info (dimmed)\n const sizeInfo = formatDocSize(doc.sizeBytes, doc.approxTokens);\n console.log(`${pc.bold(name)} ${pc.dim(sizeInfo)}`);\n\n // Line 2+: Indented \"Title: Description\"\n // Only truncate fallback body text; never truncate actual title/description\n const hasFrontmatter = title ?? doc.frontmatter?.description;\n const content =\n title && description ? `${title}: ${description}` : (title ?? description ?? '');\n if (content) {\n this.printWrappedDescription(content, maxWidth, !hasFrontmatter);\n }\n }\n }\n }\n\n /\n Extract fallback text from content when no frontmatter description exists.\n * Strips frontmatter and markdown syntax, takes first text, condenses whitespace.\n /\n private extractFallbackText(content: string): string \| undefined {\n // Strip YAML frontmatter if present\n let text = content;\n if (text.startsWith('---')) {\n const endIndex = text.indexOf('---', 3);\n if (endIndex !== -1) {\n text = text.slice(endIndex + 3);\n }\n }\n\n // Strip markdown headers (# Title -> Title)\n text = text.replace(/^#+\\s/gm, '');\n // Strip bold/italic markers\n text = text.replace(/\\\\\|__\|\\\|_/g, '');\n // Strip code blocks\n text = text.replace(/```[\\s\\S]?```/g, '');\n // Strip inline code\n text = text.replace(/`[^`]+`/g, '');\n // Strip blockquotes\n text = text.replace(/^>\\s/gm, '');\n\n // Condense all whitespace to single spaces and trim\n text = text.replace(/\\s+/g, ' ').trim();\n\n // Return first chunk of text (up to ~200 chars for reasonable fallback)\n if (text.length === 0) return undefined;\n return text.slice(0, 200);\n }\n\n /\n Print description indented, wrapped across lines.\n * @param text - Text to print\n * @param maxWidth - Terminal width\n * @param shouldTruncate - If true, truncate to two lines; if false, wrap all lines\n /\n private printWrappedDescription(text: string, maxWidth: number, shouldTruncate: boolean): void {\n const indent = ' ';\n const availableWidth = maxWidth - indent.length;\n\n if (text.length <= availableWidth) {\n // Fits on one line\n console.log(`${indent}${text}`);\n return;\n }\n\n if (shouldTruncate) {\n // Truncate to two lines max (for fallback body text)\n const firstLine = this.wrapAtWord(text, availableWidth);\n const remainder = text.slice(firstLine.length).trimStart();\n console.log(`${indent}${firstLine}`);\n if (remainder) {\n console.log(`${indent}${truncate(remainder, availableWidth)}`);\n }\n } else {\n // Wrap all lines without truncation (for title/description)\n let remaining = text;\n while (remaining.length > 0) {\n if (remaining.length <= availableWidth) {\n console.log(`${indent}${remaining}`);\n break;\n }\n const line = this.wrapAtWord(remaining, availableWidth);\n console.log(`${indent}${line}`);\n remaining = remaining.slice(line.length).trimStart();\n }\n }\n }\n\n /\n Wrap text at word boundary to fit within maxWidth.\n /\n private wrapAtWord(text: string, maxWidth: number): string {\n if (text.length <= maxWidth) return text;\n const lastSpace = text.lastIndexOf(' ', maxWidth);\n if (lastSpace > 0) {\n return text.slice(0, lastSpace);\n }\n return text.slice(0, maxWidth);\n }\n\n /\n Handle no query: show explanation + help.\n /\n private async handleNoQuery(cache: DocCache): Promise<void> {\n // Try to find the shortcut-explanation.md\n const explanation = cache.get('shortcut-explanation');\n if (explanation) {\n console.log(explanation.doc.content);\n } else {\n // Fallback explanation\n console.log('tbd shortcut - Find and output documentation shortcuts');\n console.log('');\n console.log('Usage:');\n console.log(' tbd shortcut <name> Find shortcut by exact name');\n console.log(' tbd shortcut <description> Find shortcut by fuzzy match');\n console.log(' tbd shortcut --list List all available shortcuts');\n console.log(' tbd shortcut --list --all Include shadowed shortcuts');\n console.log('');\n console.log('No shortcuts found. Run `tbd setup --auto` to install built-in shortcuts.');\n }\n }\n\n /\n Handle query: exact match first, then fuzzy.\n /\n private async handleQuery(cache: DocCache, query: string): Promise<void> {\n // Try exact match first\n const exactMatch = cache.get(query);\n if (exactMatch) {\n if (this.ctx.json) {\n this.output.data({\n name: exactMatch.doc.name,\n title: exactMatch.doc.frontmatter?.title,\n score: exactMatch.score,\n content: exactMatch.doc.content,\n });\n } else {\n console.log(SHORTCUT_AGENT_HEADER + '\\n');\n console.log(exactMatch.doc.content);\n }\n return;\n }\n\n // Fuzzy match\n const matches = cache.search(query, 5);\n if (matches.length === 0) {\n console.log(`No shortcut found matching: ${query}`);\n console.log('Run `tbd shortcut --list` to see available shortcuts.');\n return;\n }\n\n const best = matches[0]!;\n // Use PREFIX_MATCH (0.9) as threshold for high confidence\n // Below this, show suggestions instead of auto-selecting\n if (best.score < SCORE_PREFIX_MATCH) {\n // Low confidence - show suggestions instead\n console.log(`No exact match for \"${query}\". Did you mean:`);\n for (const m of matches) {\n const name = m.doc.frontmatter?.title ?? m.doc.name;\n console.log(` ${name} ${pc.dim(`(score: ${m.score.toFixed(2)})`)}`);\n }\n return;\n }\n\n // Good fuzzy match - output it\n if (this.ctx.json) {\n this.output.data({\n name: best.doc.name,\n title: best.doc.frontmatter?.title,\n score: best.score,\n content: best.doc.content,\n });\n } else {\n console.log(SHORTCUT_AGENT_HEADER + '\\n');\n console.log(best.doc.content);\n }\n }\n}\n\nexport const shortcutCommand = new Command('shortcut')\n .description('Find and output documentation shortcuts')\n .argument('[query]', 'Shortcut name or description to search for')\n .option('--list', 'List all available shortcuts')\n .option('--all', 'Include shadowed shortcuts (use with --list)')\n .option(\n '--category <category>',\n 'Filter by category: planning, implementation, quality, shipping',\n )\n .option('--refresh', 'Refresh the cached shortcut directory')\n .option('--quiet', 'Suppress output (use with --refresh)')\n .option('--add <url>', 'Add a shortcut from a URL')\n .option('--name <name>', 'Name for the added shortcut (required with --add)')\n .action(async (query: string \| undefined, options: ShortcutOptions, command) => {\n const handler = new ShortcutHandler(command);\n await handler.run(query, options);\n });\n","/\n Shared base class for document listing/lookup commands.\n \n Used by shortcuts, guidelines, and templates commands to provide\n * consistent behavior for --list, fuzzy search, and exact match.\n /\n\nimport type { Command } from 'commander';\nimport pc from 'picocolors';\n\nimport { BaseCommand } from './base-command.js';\nimport { GUIDELINES_AGENT_HEADER } from './doc-prompts.js';\nimport { requireInit } from './errors.js';\nimport { DocCache, SCORE_PREFIX_MATCH } from '../../file/doc-cache.js';\nimport { addDoc, type DocType } from '../../file/doc-add.js';\nimport { truncate } from '../../lib/truncate.js';\nimport { formatDocSize } from '../../lib/format-utils.js';\nimport { getTerminalWidth } from './output.js';\n\n/\n Configuration for a doc command handler.\n /\nexport interface DocCommandConfig {\n /* Display name for the doc type (e.g., \"shortcut\", \"guideline\", \"template\") /\n typeName: string;\n /* Plural display name (e.g., \"shortcuts\", \"guidelines\", \"templates\") /\n typeNamePlural: string;\n /* Paths to search for documents (relative to tbd root) /\n paths: string[];\n /* Names to exclude from listings (e.g., system docs) /\n excludeFromList?: string[];\n /* Content to show when no query is provided (optional) /\n noQueryDocName?: string;\n /* The doc type for --add operations /\n docType: DocType;\n}\n\n/\n Common options for doc commands.\n /\nexport interface DocCommandOptions {\n list?: boolean;\n all?: boolean;\n refresh?: boolean;\n quiet?: boolean;\n add?: string;\n name?: string;\n}\n\n/\n Base handler for document commands (shortcuts, guidelines, templates).\n \n Provides shared functionality for:\n * - Listing documents with --list\n * - Exact name lookup\n * - Fuzzy search\n * - Wrapped description output\n /\nexport abstract class DocCommandHandler extends BaseCommand {\n protected cache: DocCache \| null = null;\n protected tbdRoot = '';\n\n constructor(\n command: Command,\n protected readonly config: DocCommandConfig,\n ) {\n super(command);\n }\n\n /\n Initialize the doc cache. Must be called before other operations.\n /\n protected async initCache(): Promise<void> {\n this.tbdRoot = await requireInit();\n this.cache = new DocCache(this.config.paths, this.tbdRoot);\n await this.cache.load({ quiet: this.ctx.quiet });\n }\n\n /\n Handle --list mode: show all available documents.\n /\n protected async handleList(includeAll?: boolean): Promise<void> {\n if (!this.cache) throw new Error('Cache not initialized');\n\n const docs = this.cache.list(includeAll);\n\n if (this.ctx.json) {\n this.output.data(\n docs.map((d) => ({\n name: d.name,\n title: d.frontmatter?.title,\n description: d.frontmatter?.description,\n path: d.path,\n sourceDir: d.sourceDir,\n sizeBytes: d.sizeBytes,\n approxTokens: d.approxTokens,\n shadowed: this.cache!.isShadowed(d),\n })),\n );\n return;\n }\n\n if (docs.length === 0) {\n console.log(`No ${this.config.typeNamePlural} found.`);\n console.log(`Run \\`tbd setup --auto\\` to install built-in ${this.config.typeNamePlural}.`);\n return;\n }\n\n const maxWidth = getTerminalWidth();\n\n for (const doc of docs) {\n const shadowed = this.cache.isShadowed(doc);\n const name = doc.name;\n const title = doc.frontmatter?.title;\n const description = doc.frontmatter?.description ?? this.extractFallbackText(doc.content);\n\n if (shadowed) {\n // Muted style for shadowed entries\n const line = `${name} (${doc.sourceDir}) [shadowed]`;\n console.log(pc.dim(truncate(line, maxWidth)));\n } else {\n // Line 1: name (bold) + size/token info (dimmed)\n const sizeInfo = formatDocSize(doc.sizeBytes, doc.approxTokens);\n console.log(`${pc.bold(name)} ${pc.dim(sizeInfo)}`);\n\n // Line 2+: Indented \"Title: Description\"\n const hasFrontmatter = title ?? doc.frontmatter?.description;\n const content =\n title && description ? `${title}: ${description}` : (title ?? description ?? '');\n if (content) {\n this.printWrappedDescription(content, maxWidth, !hasFrontmatter);\n }\n }\n }\n }\n\n /\n Handle no query: show explanation + help.\n /\n protected async handleNoQuery(): Promise<void> {\n if (!this.cache) throw new Error('Cache not initialized');\n\n // Try to find the explanation doc if configured\n if (this.config.noQueryDocName) {\n const explanation = this.cache.get(this.config.noQueryDocName);\n if (explanation) {\n console.log(explanation.doc.content);\n return;\n }\n }\n\n // Fallback explanation\n const { typeName, typeNamePlural } = this.config;\n console.log(`tbd ${typeNamePlural} - Find and output ${typeNamePlural}`);\n console.log('');\n console.log('Usage:');\n console.log(` tbd ${typeNamePlural} <name> Find ${typeName} by exact name`);\n console.log(` tbd ${typeNamePlural} <description> Find ${typeName} by fuzzy match`);\n console.log(` tbd ${typeNamePlural} --list List all available ${typeNamePlural}`);\n console.log(` tbd ${typeNamePlural} --list --all Include shadowed ${typeNamePlural}`);\n console.log('');\n console.log(\n `No ${typeNamePlural} found. Run \\`tbd setup --auto\\` to install built-in ${typeNamePlural}.`,\n );\n }\n\n /\n Get the agent instruction header for the doc type.\n * Returns undefined if no header should be shown.\n /\n protected getAgentHeader(): string \| undefined {\n if (this.config.typeName === 'guideline') {\n return GUIDELINES_AGENT_HEADER;\n }\n // Templates and other types don't need a header\n return undefined;\n }\n\n /\n Handle query: exact match first, then fuzzy.\n /\n protected async handleQuery(query: string): Promise<void> {\n if (!this.cache) throw new Error('Cache not initialized');\n\n // Try exact match first\n const exactMatch = this.cache.get(query);\n if (exactMatch) {\n if (this.ctx.json) {\n this.output.data({\n name: exactMatch.doc.name,\n title: exactMatch.doc.frontmatter?.title,\n score: exactMatch.score,\n content: exactMatch.doc.content,\n });\n } else {\n const header = this.getAgentHeader();\n if (header) {\n console.log(header + '\\n');\n }\n console.log(exactMatch.doc.content);\n }\n return;\n }\n\n // Fuzzy match\n const matches = this.cache.search(query, 5);\n if (matches.length === 0) {\n console.log(`No ${this.config.typeName} found matching: ${query}`);\n console.log(\n `Run \\`tbd ${this.config.typeNamePlural} --list\\` to see available ${this.config.typeNamePlural}.`,\n );\n return;\n }\n\n const best = matches[0]!;\n // Use PREFIX_MATCH (0.9) as threshold for high confidence\n if (best.score < SCORE_PREFIX_MATCH) {\n // Low confidence - show suggestions instead\n console.log(`No exact match for \"${query}\". Did you mean:`);\n for (const m of matches) {\n const name = m.doc.frontmatter?.title ?? m.doc.name;\n console.log(` ${name} ${pc.dim(`(score: ${m.score.toFixed(2)})`)}`);\n }\n return;\n }\n\n // Good fuzzy match - output it\n if (this.ctx.json) {\n this.output.data({\n name: best.doc.name,\n title: best.doc.frontmatter?.title,\n score: best.score,\n content: best.doc.content,\n });\n } else {\n const header = this.getAgentHeader();\n if (header) {\n console.log(header + '\\n');\n }\n console.log(best.doc.content);\n }\n }\n\n /\n Handle --add mode: add an external document by URL.\n /\n protected async handleAdd(url: string, name: string): Promise<void> {\n if (!this.tbdRoot) {\n this.tbdRoot = await requireInit();\n }\n\n const { typeName, docType } = this.config;\n\n console.log(`Adding ${typeName}: ${name}`);\n console.log(` URL: ${url}`);\n\n const result = await addDoc(this.tbdRoot, { url, name, docType });\n\n if (result.usedGhCli) {\n console.log(pc.dim(' (fetched via gh CLI due to direct access restriction)'));\n }\n\n console.log(pc.green(` Added to ${result.destPath}`));\n console.log(pc.green(` Config updated with source: ${result.rawUrl}`));\n console.log('');\n console.log(`Run \\`tbd ${this.config.typeNamePlural} --list\\` to verify.`);\n }\n\n /\n Extract fallback text from content when no frontmatter description exists.\n /\n protected extractFallbackText(content: string): string \| undefined {\n // Strip YAML frontmatter if present\n let text = content;\n if (text.startsWith('---')) {\n const endIndex = text.indexOf('---', 3);\n if (endIndex !== -1) {\n text = text.slice(endIndex + 3);\n }\n }\n\n // Strip markdown headers (# Title -> Title)\n text = text.replace(/^#+\\s/gm, '');\n // Strip bold/italic markers\n text = text.replace(/\\\\\|__\|\\\|_/g, '');\n // Strip code blocks\n text = text.replace(/```[\\s\\S]?```/g, '');\n // Strip inline code\n text = text.replace(/`[^`]+`/g, '');\n // Strip blockquotes\n text = text.replace(/^>\\s/gm, '');\n\n // Condense all whitespace to single spaces and trim\n text = text.replace(/\\s+/g, ' ').trim();\n\n // Return first chunk of text (up to ~200 chars for reasonable fallback)\n if (text.length === 0) return undefined;\n return text.slice(0, 200);\n }\n\n /\n Print description indented, wrapped across lines.\n /\n protected printWrappedDescription(text: string, maxWidth: number, shouldTruncate: boolean): void {\n const indent = ' ';\n const availableWidth = maxWidth - indent.length;\n\n if (text.length <= availableWidth) {\n console.log(`${indent}${text}`);\n return;\n }\n\n if (shouldTruncate) {\n // Truncate to two lines max (for fallback body text)\n const firstLine = this.wrapAtWord(text, availableWidth);\n const remainder = text.slice(firstLine.length).trimStart();\n console.log(`${indent}${firstLine}`);\n if (remainder) {\n console.log(`${indent}${truncate(remainder, availableWidth)}`);\n }\n } else {\n // Wrap all lines without truncation (for title/description)\n let remaining = text;\n while (remaining.length > 0) {\n if (remaining.length <= availableWidth) {\n console.log(`${indent}${remaining}`);\n break;\n }\n const line = this.wrapAtWord(remaining, availableWidth);\n console.log(`${indent}${line}`);\n remaining = remaining.slice(line.length).trimStart();\n }\n }\n }\n\n /\n Wrap text at word boundary to fit within maxWidth.\n /\n protected wrapAtWord(text: string, maxWidth: number): string {\n if (text.length <= maxWidth) return text;\n const lastSpace = text.lastIndexOf(' ', maxWidth);\n if (lastSpace > 0) {\n return text.slice(0, lastSpace);\n }\n return text.slice(0, maxWidth);\n }\n}\n","/\n `tbd guidelines` - Find and output coding guidelines.\n \n Guidelines are reusable coding rules and best practices documents.\n * Give a name or description and tbd will find the matching guideline.\n /\n\nimport { Command } from 'commander';\nimport pc from 'picocolors';\n\nimport { DocCommandHandler, type DocCommandOptions } from '../lib/doc-command-handler.js';\nimport { CLIError } from '../lib/errors.js';\nimport { DEFAULT_GUIDELINES_PATHS } from '../../lib/paths.js';\nimport { truncate } from '../../lib/truncate.js';\nimport { formatDocSize } from '../../lib/format-utils.js';\nimport { getTerminalWidth } from '../lib/output.js';\n\n/\n Guideline categories for filtering.\n /\ntype GuidelineCategory = 'typescript' \| 'python' \| 'testing' \| 'general';\n\n/\n Infer category from guideline name.\n /\nfunction inferGuidelineCategory(name: string): GuidelineCategory \| undefined {\n // TypeScript guidelines\n if (name.startsWith('typescript-')) {\n return 'typescript';\n }\n\n // Python guidelines\n if (name.startsWith('python-')) {\n return 'python';\n }\n\n // Testing guidelines\n if (name.includes('tdd') \|\| name.includes('testing') \|\| name.includes('golden')) {\n return 'testing';\n }\n\n // General guidelines (everything else starting with general- or other general rules)\n if (\n name.startsWith('general-') \|\|\n name.includes('rules') \|\|\n name.includes('patterns') \|\|\n name.startsWith('backward-') \|\|\n name.startsWith('convex-') \|\|\n name.startsWith('release-')\n ) {\n return 'general';\n }\n\n return undefined;\n}\n\ninterface GuidelinesOptions extends DocCommandOptions {\n category?: string;\n add?: string;\n name?: string;\n}\n\nclass GuidelinesHandler extends DocCommandHandler {\n constructor(command: Command) {\n super(command, {\n typeName: 'guideline',\n typeNamePlural: 'guidelines',\n paths: DEFAULT_GUIDELINES_PATHS,\n docType: 'guideline',\n });\n }\n\n async run(query: string \| undefined, options: GuidelinesOptions): Promise<void> {\n await this.execute(async () => {\n // Add mode\n if (options.add) {\n if (!options.name) {\n throw new CLIError('--name is required when using --add');\n }\n await this.handleAdd(options.add, options.name);\n return;\n }\n\n await this.initCache();\n\n // List mode (also triggered by --category)\n if (options.list \|\| options.category) {\n await this.handleListWithCategory(options.all, options.category);\n return;\n }\n\n // No query: show help\n if (!query) {\n await this.handleNoQuery();\n return;\n }\n\n // Query provided: try exact match first, then fuzzy\n await this.handleQuery(query);\n }, 'Failed to find guideline');\n }\n\n /\n Handle --list mode with optional category filtering.\n /\n private async handleListWithCategory(includeAll?: boolean, category?: string): Promise<void> {\n if (!this.cache) throw new Error('Cache not initialized');\n\n let docs = this.cache.list(includeAll);\n\n // Filter by category if specified\n if (category) {\n docs = docs.filter((d) => {\n const docCategory = inferGuidelineCategory(d.name);\n return docCategory === category;\n });\n }\n\n if (this.ctx.json) {\n this.output.data(\n docs.map((d) => ({\n name: d.name,\n title: d.frontmatter?.title,\n description: d.frontmatter?.description,\n category: inferGuidelineCategory(d.name),\n path: d.path,\n sourceDir: d.sourceDir,\n sizeBytes: d.sizeBytes,\n approxTokens: d.approxTokens,\n shadowed: this.cache!.isShadowed(d),\n })),\n );\n return;\n }\n\n if (docs.length === 0) {\n if (category) {\n console.log(`No guidelines found in category: ${category}`);\n console.log('Valid categories: typescript, python, testing, general');\n } else {\n console.log('No guidelines found.');\n console.log('Run `tbd setup --auto` to install built-in guidelines.');\n }\n return;\n }\n\n const maxWidth = getTerminalWidth();\n\n for (const doc of docs) {\n const shadowed = this.cache.isShadowed(doc);\n const name = doc.name;\n const title = doc.frontmatter?.title;\n const description = doc.frontmatter?.description ?? this.extractFallbackText(doc.content);\n\n if (shadowed) {\n const line = `${name} (${doc.sourceDir}) [shadowed]`;\n console.log(pc.dim(truncate(line, maxWidth)));\n } else {\n const sizeInfo = formatDocSize(doc.sizeBytes, doc.approxTokens);\n console.log(`${pc.bold(name)} ${pc.dim(sizeInfo)}`);\n const hasFrontmatter = title ?? doc.frontmatter?.description;\n const content =\n title && description ? `${title}: ${description}` : (title ?? description ?? '');\n if (content) {\n this.printWrappedDescription(content, maxWidth, !hasFrontmatter);\n }\n }\n }\n }\n}\n\nexport const guidelinesCommand = new Command('guidelines')\n .description('Find and output coding guidelines')\n .argument('[query]', 'Guideline name or description to search for')\n .option('--list', 'List all available guidelines')\n .option('--all', 'Include shadowed guidelines (use with --list)')\n .option('--category <category>', 'Filter by category: typescript, python, testing, general')\n .option('--add <url>', 'Add a guideline from a URL')\n .option('--name <name>', 'Name for the added guideline (required with --add)')\n .action(async (query: string \| undefined, options: GuidelinesOptions, command) => {\n const handler = new GuidelinesHandler(command);\n await handler.run(query, options);\n });\n","/\n `tbd template` - Find and output document templates.\n \n Templates are reusable document templates for specs, research briefs, etc.\n * Give a name or description and tbd will find the matching template.\n /\n\nimport { Command } from 'commander';\n\nimport { DocCommandHandler, type DocCommandOptions } from '../lib/doc-command-handler.js';\nimport { CLIError } from '../lib/errors.js';\nimport { DEFAULT_TEMPLATE_PATHS } from '../../lib/paths.js';\n\nclass TemplateHandler extends DocCommandHandler {\n constructor(command: Command) {\n super(command, {\n typeName: 'template',\n typeNamePlural: 'templates',\n paths: DEFAULT_TEMPLATE_PATHS,\n docType: 'template',\n });\n }\n\n async run(query: string \| undefined, options: DocCommandOptions): Promise<void> {\n await this.execute(async () => {\n // Add mode\n if (options.add) {\n if (!options.name) {\n throw new CLIError('--name is required when using --add');\n }\n await this.handleAdd(options.add, options.name);\n return;\n }\n\n await this.initCache();\n\n // List mode\n if (options.list) {\n await this.handleList(options.all);\n return;\n }\n\n // No query: show help\n if (!query) {\n await this.handleNoQuery();\n return;\n }\n\n // Query provided: try exact match first, then fuzzy\n await this.handleQuery(query);\n }, 'Failed to find template');\n }\n}\n\nexport const templateCommand = new Command('template')\n .description('Find and output document templates')\n .argument('[query]', 'Template name or description to search for')\n .option('--list', 'List all available templates')\n .option('--all', 'Include shadowed templates (use with --list)')\n .option('--add <url>', 'Add a template from a URL')\n .option('--name <name>', 'Name for the added template (required with --add)')\n .action(async (query: string \| undefined, options: DocCommandOptions, command) => {\n const handler = new TemplateHandler(command);\n await handler.run(query, options);\n });\n","/\n Prefix validation and beads prefix extraction module.\n \n Provides functions to validate prefixes and extract prefix from beads config.\n * Used by setup commands to validate user-provided prefixes and migrate from beads.\n /\n\nimport { readFile } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport { parse as parseYaml } from 'yaml';\n\n/* Maximum length for a valid prefix /\nconst MAX_PREFIX_LENGTH = 10;\n\n/* Minimum length for a valid prefix /\nconst MIN_PREFIX_LENGTH = 1;\n\n/\n Normalize a prefix string.\n * - Lowercases\n * - Removes invalid characters (keeps only alphanumeric)\n * - Truncates to max length\n /\nexport function normalizePrefix(s: string): string {\n if (!s) return '';\n\n // Lowercase and remove non-alphanumeric characters\n const normalized = s.toLowerCase().replace(/[^a-z0-9]/g, '');\n\n // Truncate to max length\n return normalized.slice(0, MAX_PREFIX_LENGTH);\n}\n\n/\n Check if a prefix is valid.\n * - Must be 1-10 characters\n * - Must start with a letter\n * - Must be alphanumeric only (lowercase)\n /\nexport function isValidPrefix(s: string): boolean {\n if (!s) return false;\n if (s.length < MIN_PREFIX_LENGTH \|\| s.length > MAX_PREFIX_LENGTH) return false;\n\n // Must match: starts with letter, followed by alphanumeric (lowercase)\n return /^[a-z][a-z0-9]$/.test(s);\n}\n\n/*\n Get prefix from existing beads config.\n \n Looks for .beads/config.yaml and extracts display.id_prefix\n \n @param cwd Current working directory\n * @returns The beads prefix, or null if not found\n /\nexport async function getBeadsPrefix(cwd: string): Promise<string \| null> {\n try {\n const configPath = join(cwd, '.beads', 'config.yaml');\n const content = await readFile(configPath, 'utf-8');\n const config = parseYaml(content) as Record<string, unknown>;\n\n const display = config?.display as Record<string, unknown> \| undefined;\n const prefix = display?.id_prefix;\n\n if (typeof prefix === 'string' && isValidPrefix(prefix)) {\n return prefix;\n }\n\n return null;\n } catch {\n return null;\n }\n}\n","/\n `tbd setup` - Configure tbd integration with editors and tools.\n \n Requires a git repository. All setup artifacts (.tbd/, .claude/) are placed\n * at the git root, adjacent to .git/. Installation is always project-local —\n * there is no global/user-level install.\n \n Options:\n * - `tbd setup --auto` - Non-interactive setup (for agents/scripts)\n * - `tbd setup --interactive` - Interactive setup with prompts (for humans)\n * - `tbd setup --from-beads` - Migrate from Beads to tbd\n \n See: tbd-design.md §6.4.2 Claude Code Integration\n /\n\nimport { Command } from 'commander';\nimport { readFile, mkdir, access, rm, rename, chmod, readdir } from 'node:fs/promises';\nimport { spawnSync } from 'node:child_process';\nimport { join, dirname } from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { writeFile } from 'atomically';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError } from '../lib/errors.js';\nimport { loadSkillContent } from './prime.js';\nimport { stripFrontmatter, insertAfterFrontmatter } from '../../utils/markdown-utils.js';\nimport { pathExists } from '../../utils/file-utils.js';\nimport { ensureGitignorePatterns } from '../../utils/gitignore-utils.js';\nimport { type DiagnosticResult, renderDiagnostics } from '../lib/diagnostics.js';\nimport { isValidPrefix, getBeadsPrefix } from '../lib/prefix-detection.js';\nimport {\n initConfig,\n isInitialized,\n readConfig,\n readConfigWithMigration,\n findTbdRoot,\n writeConfig,\n markWelcomeSeen,\n} from '../../file/config.js';\nimport { syncDocsWithDefaults } from '../../file/doc-sync.js';\nimport { VERSION } from '../lib/version.js';\nimport {\n TBD_DIR,\n TBD_DOCS_DIR,\n WORKTREE_DIR_NAME,\n DATA_SYNC_DIR_NAME,\n DEFAULT_SHORTCUT_PATHS,\n DEFAULT_GUIDELINES_PATHS,\n TBD_SHORTCUTS_SYSTEM,\n TBD_SHORTCUTS_STANDARD,\n TBD_GUIDELINES_DIR,\n TBD_TEMPLATES_DIR,\n} from '../../lib/paths.js';\nimport { getClaudePaths, getAgentsMdPath, GLOBAL_CLAUDE_DIR } from '../../lib/integration-paths.js';\nimport { initWorktree, isInGitRepo, findGitRoot, checkWorktreeHealth } from '../../file/git.js';\nimport { DocCache, generateShortcutDirectory } from '../../file/doc-cache.js';\n\n/\n Get the shortcut and guidelines directory content for appending to installed skill files.\n * Always generates on-the-fly from installed shortcuts and guidelines.\n \n @param quiet - If true, suppress auto-sync output (default: false)\n /\nasync function getShortcutDirectory(quiet = false): Promise<string \| null> {\n const cwd = process.cwd();\n\n // Try to find tbd root (may not be initialized)\n const tbdRoot = await findTbdRoot(cwd);\n if (!tbdRoot) {\n return null;\n }\n\n // Load shortcuts\n const shortcutCache = new DocCache(DEFAULT_SHORTCUT_PATHS, tbdRoot);\n await shortcutCache.load({ quiet });\n const shortcuts = shortcutCache.list();\n\n // Load guidelines\n const guidelinesCache = new DocCache(DEFAULT_GUIDELINES_PATHS, tbdRoot);\n await guidelinesCache.load({ quiet });\n const guidelines = guidelinesCache.list();\n\n // If no docs loaded, skip directory\n if (shortcuts.length === 0 && guidelines.length === 0) {\n return null;\n }\n\n return generateShortcutDirectory(shortcuts, guidelines);\n}\n\n/\n Get the tbd section content for AGENTS.md (Codex integration).\n * Loads from SKILL.md, strips frontmatter, and wraps in TBD INTEGRATION markers.\n \n @param quiet - If true, suppress auto-sync output (default: false)\n /\nasync function getCodexTbdSection(quiet = false): Promise<string> {\n const skillContent = await loadSkillContent();\n let content = stripFrontmatter(skillContent);\n const directory = await getShortcutDirectory(quiet);\n if (directory) {\n content = content.trimEnd() + '\\n\\n' + directory + '\\n';\n }\n return `<!-- BEGIN TBD INTEGRATION -->\\n${content}<!-- END TBD INTEGRATION -->\\n`;\n}\n\ninterface SetupClaudeOptions {\n check?: boolean;\n remove?: boolean;\n}\n\ninterface SetupCodexOptions {\n check?: boolean;\n remove?: boolean;\n}\n\n/\n Script to ensure tbd CLI is installed and run tbd prime.\n * Installed to project .claude/scripts/tbd-session.sh.\n * Runs on SessionStart and PreCompact to ensure tbd is available and provide orientation.\n \n Usage:\n * tbd-session.sh # Ensure tbd + run tbd prime\n * tbd-session.sh --brief # Ensure tbd + run tbd prime --brief (for PreCompact)\n /\nconst TBD_SESSION_SCRIPT = `#!/bin/bash\n# Ensure tbd CLI is installed and run tbd prime for Claude Code sessions\n# Installed by: tbd setup --auto\n# This script runs on SessionStart and PreCompact\n\n# Get npm global bin directory (if npm is available)\nNPM_GLOBAL_BIN=\"\"\nif command -v npm &> /dev/null; then\n NPM_PREFIX=$(npm config get prefix 2>/dev/null)\n if [ -n \"$NPM_PREFIX\" ] && [ -d \"$NPM_PREFIX/bin\" ]; then\n NPM_GLOBAL_BIN=\"$NPM_PREFIX/bin\"\n fi\nfi\n\n# Add common binary locations to PATH (persists for entire script)\n# Include npm global bin if found\nexport PATH=\"$NPM_GLOBAL_BIN:$HOME/.local/bin:$HOME/bin:/usr/local/bin:$PATH\"\n\n# Function to ensure tbd is available\nensure_tbd() {\n # Check if tbd is already installed\n if command -v tbd &> /dev/null; then\n return 0\n fi\n\n echo \"[tbd] CLI not found, installing...\"\n\n # Try npm first (most common for Node.js tools)\n if command -v npm &> /dev/null; then\n echo \"[tbd] Installing via npm...\"\n npm install -g get-tbd 2>/dev/null \|\| {\n # If global install fails (permissions), try local install\n echo \"[tbd] Global npm install failed, trying user install...\"\n mkdir -p ~/.local/bin\n npm install --prefix ~/.local get-tbd\n # Create symlink if needed\n if [ -f ~/.local/node_modules/.bin/tbd ]; then\n ln -sf ~/.local/node_modules/.bin/tbd ~/.local/bin/tbd\n fi\n }\n elif command -v pnpm &> /dev/null; then\n echo \"[tbd] Installing via pnpm...\"\n pnpm add -g get-tbd\n elif command -v yarn &> /dev/null; then\n echo \"[tbd] Installing via yarn...\"\n yarn global add get-tbd\n else\n echo \"[tbd] ERROR: No package manager found (npm, pnpm, or yarn required)\"\n echo \"[tbd] Please install Node.js and npm, then run: npm install -g get-tbd\"\n return 1\n fi\n\n # Verify installation\n if command -v tbd &> /dev/null; then\n echo \"[tbd] Successfully installed to $(which tbd)\"\n return 0\n else\n echo \"[tbd] WARNING: tbd installed but not found in PATH\"\n echo \"[tbd] Checking common locations...\"\n # Try to find and add to path (include npm global bin)\n for dir in \"$NPM_GLOBAL_BIN\" ~/.local/bin ~/.local/node_modules/.bin /usr/local/bin; do\n if [ -n \"$dir\" ] && [ -x \"$dir/tbd\" ]; then\n export PATH=\"$dir:$PATH\"\n echo \"[tbd] Found at $dir/tbd\"\n return 0\n fi\n done\n echo \"[tbd] Could not locate tbd after installation\"\n return 1\n fi\n}\n\n# Main\nensure_tbd \|\| exit 1\n\n# Run tbd prime with any passed arguments (e.g., --brief for PreCompact)\ntbd prime \"$@\"\n`;\n\n/\n Claude Code session hooks configuration.\n * Always uses project-relative paths so hooks work in any environment\n * (local dev, Claude Code Cloud, etc.).\n /\nconst CLAUDE_SESSION_HOOKS = {\n hooks: {\n SessionStart: [\n {\n matcher: '',\n hooks: [{ type: 'command', command: 'bash .claude/scripts/tbd-session.sh' }],\n },\n ],\n PreCompact: [\n {\n matcher: '',\n hooks: [{ type: 'command', command: 'bash .claude/scripts/tbd-session.sh --brief' }],\n },\n ],\n },\n};\n\n/\n Claude Code project-local hooks configuration (installed to .claude/settings.json)\n * PostToolUse hook reminds about tbd sync after git push\n /\nconst CLAUDE_PROJECT_HOOKS = {\n hooks: {\n PostToolUse: [\n {\n matcher: 'Bash',\n hooks: [\n {\n type: 'command',\n command: '\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/tbd-closing-reminder.sh',\n },\n ],\n },\n ],\n },\n};\n\n/\n Script to remind about close protocol after git push\n /\nconst TBD_CLOSE_PROTOCOL_SCRIPT = `#!/bin/bash\n# Remind about close protocol after git push\n# Installed by: tbd setup claude\n\ninput=$(cat)\ncommand=$(echo \"$input\" \| jq -r '.tool_input.command // empty')\n\n# Check if this is a git push command and .tbd exists\nif [[ \"$command\" == git\\\\ push ]] \|\| [[ \"$command\" == \"&& git push\" ]] \|\| [[ \"$command\" == \"; git push\" ]]; then\n if [ -d \".tbd\" ]; then\n tbd closing\n fi\nfi\n\nexit 0\n`;\n\n/*\n SessionStart hook entry for the gh CLI ensure script.\n * Installed to project-local .claude/settings.json when use_gh_cli is true.\n /\nconst GH_CLI_HOOK_ENTRY = {\n matcher: '',\n hooks: [{ type: 'command', command: 'bash .claude/scripts/ensure-gh-cli.sh', timeout: 120 }],\n};\n\n/\n Command string used to identify the gh CLI hook entry in settings.json.\n /\nconst GH_CLI_HOOK_COMMAND_PATTERN = 'ensure-gh-cli';\n\n/\n Load a bundled script from dist/docs/install/ (or dev fallback).\n * Used to read real .sh files that are copied into the npm package at build time.\n /\nasync function loadBundledScript(name: string): Promise<string> {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // Flat bundle: dist/docs/install/<name> (tsdown produces flat dist/)\n const flatBundlePath = join(__dirname, 'docs', 'install', name);\n // Nested bundle: dist/cli/commands/../../docs/install/<name>\n const nestedBundlePath = join(__dirname, '..', 'docs', 'install', name);\n // Dev fallback: packages/tbd/docs/install/<name>\n const devPath = join(__dirname, '..', '..', '..', 'docs', 'install', name);\n for (const p of [flatBundlePath, nestedBundlePath, devPath]) {\n try {\n return await readFile(p, 'utf-8');\n } catch {\n continue;\n }\n }\n throw new Error(`Bundled script not found: ${name}`);\n}\n\n/\n AGENTS.md integration markers for Codex/Factory.ai\n * Content is now generated dynamically from SKILL.md via getCodexTbdSection()\n /\nconst CODEX_BEGIN_MARKER = '<!-- BEGIN TBD INTEGRATION -->';\nconst CODEX_END_MARKER = '<!-- END TBD INTEGRATION -->';\n\n/\n Generate a new AGENTS.md file with tbd integration.\n \n @param quiet - If true, suppress auto-sync output (default: false)\n /\nasync function getCodexNewAgentsFile(quiet = false): Promise<string> {\n const tbdSection = await getCodexTbdSection(quiet);\n return `# Project Instructions for AI Agents\n\nThis file provides instructions and context for AI coding agents working on this project.\n\n${tbdSection}\n## Build & Test\n\n_Add your build and test commands here_\n\n\\`\\`\\`bash\n# Example:\n# npm install\n# npm test\n\\`\\`\\`\n\n## Architecture Overview\n\n_Add a brief overview of your project architecture_\n\n## Conventions & Patterns\n\n_Add your project-specific conventions here_\n`;\n}\n\n/\n Legacy script patterns to clean up from .claude/scripts/\n * These were used in older versions of tbd before hooks moved to `tbd prime`\n /\nconst LEGACY_TBD_SCRIPTS = ['setup-tbd.sh', 'ensure-tbd-cli.sh', 'ensure-tbd.sh', 'tbd-setup.sh'];\n\n/\n Patterns to identify legacy tbd hooks that should be removed.\n * These patterns match old-style commands that are no longer used.\n /\nconst LEGACY_TBD_HOOK_PATTERNS = [\n /\\.claude\\/scripts\\/.tbd/i, // Any tbd-related script in .claude/scripts/\n /tbd\\s+setup\\s+claude/i, // Old command: tbd setup claude\n /setup-tbd\\.sh/i, // Old script name\n /ensure-tbd/i, // Old script names\n];\n\nclass SetupClaudeHandler extends BaseCommand {\n private projectDir: string \| undefined;\n\n setProjectDir(dir: string): void {\n this.projectDir = dir;\n }\n\n async run(options: SetupClaudeOptions): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n const claudePaths = getClaudePaths(cwd);\n\n if (options.check) {\n await this.checkClaudeSetup(claudePaths.skill);\n return;\n }\n\n if (options.remove) {\n await this.removeClaudeSetup(claudePaths.skill);\n return;\n }\n\n await this.installClaudeSetup(claudePaths.skill);\n }\n\n private async checkClaudeSetup(skillPath: string): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n let sessionScriptInstalled = false;\n let sessionStartHook = false;\n let preCompactHook = false;\n let postToolUseHook = false;\n let hookScriptInstalled = false;\n let skillInstalled = false;\n\n // All hooks and scripts are project-local in .claude/\n const projectSettingsPath = join(cwd, '.claude', 'settings.json');\n const sessionScript = join(cwd, '.claude', 'scripts', 'tbd-session.sh');\n const hookScriptPath = join(cwd, '.claude', 'hooks', 'tbd-closing-reminder.sh');\n\n // Check for tbd-session.sh script\n try {\n await access(sessionScript);\n sessionScriptInstalled = true;\n } catch {\n // Script doesn't exist\n }\n\n // Check hooks in project settings\n try {\n await access(projectSettingsPath);\n const content = await readFile(projectSettingsPath, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n const hooks = settings.hooks as Record<string, unknown> \| undefined;\n\n if (hooks) {\n const sessionStart = hooks.SessionStart as { hooks?: { command?: string }[] }[];\n const preCompact = hooks.PreCompact as { hooks?: { command?: string }[] }[];\n const postToolUse = hooks.PostToolUse as { hooks?: { command?: string }[] }[];\n\n sessionStartHook =\n sessionStart?.some((h) =>\n h.hooks?.some(\n (hook) =>\n (hook.command?.includes('tbd prime') ?? false) \|\|\n (hook.command?.includes('tbd-session.sh') ?? false),\n ),\n ) ?? false;\n\n preCompactHook =\n preCompact?.some((h) =>\n h.hooks?.some(\n (hook) =>\n (hook.command?.includes('tbd prime') ?? false) \|\|\n (hook.command?.includes('tbd-session.sh') ?? false),\n ),\n ) ?? false;\n\n postToolUseHook =\n postToolUse?.some((h) =>\n h.hooks?.some((hook) => hook.command?.includes('tbd-closing-reminder')),\n ) ?? false;\n }\n } catch {\n // Project settings file doesn't exist\n }\n\n try {\n await access(hookScriptPath);\n hookScriptInstalled = true;\n } catch {\n // Hook script doesn't exist\n }\n\n const sessionHooksInstalled = sessionStartHook && preCompactHook && sessionScriptInstalled;\n const projectHooksInstalled = postToolUseHook && hookScriptInstalled;\n\n // Check skill file in project\n try {\n await access(skillPath);\n skillInstalled = true;\n } catch {\n // Skill file doesn't exist\n }\n\n const fullyInstalled = sessionHooksInstalled && projectHooksInstalled && skillInstalled;\n\n // Build diagnostic results for text output\n const diagnostics: DiagnosticResult[] = [];\n const settingsRelPath = '.claude/settings.json';\n\n // Session hooks diagnostic\n if (sessionHooksInstalled) {\n diagnostics.push({\n name: 'Session hooks',\n status: 'ok',\n message: 'SessionStart, PreCompact',\n path: settingsRelPath,\n });\n } else if (sessionStartHook \|\| preCompactHook) {\n diagnostics.push({\n name: 'Session hooks',\n status: 'warn',\n message: 'partially configured',\n path: settingsRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n } else {\n diagnostics.push({\n name: 'Session hooks',\n status: 'warn',\n message: 'not configured',\n path: settingsRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n }\n\n // Project hooks diagnostic\n if (projectHooksInstalled) {\n diagnostics.push({\n name: 'Project hooks',\n status: 'ok',\n message: 'PostToolUse sync reminder',\n path: settingsRelPath,\n });\n } else if (postToolUseHook \|\| hookScriptInstalled) {\n diagnostics.push({\n name: 'Project hooks',\n status: 'warn',\n message: 'partially configured',\n path: settingsRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n } else {\n diagnostics.push({\n name: 'Project hooks',\n status: 'warn',\n message: 'not configured',\n path: settingsRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n }\n\n // Skill file diagnostic\n const skillRelPath = '.claude/skills/tbd/SKILL.md';\n if (skillInstalled) {\n diagnostics.push({\n name: 'Skill file',\n status: 'ok',\n path: skillRelPath,\n });\n } else {\n diagnostics.push({\n name: 'Skill file',\n status: 'warn',\n message: 'not found',\n path: skillRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n }\n\n this.output.data(\n {\n installed: fullyInstalled,\n sessionHooks: {\n installed: sessionHooksInstalled,\n sessionStart: sessionStartHook,\n preCompact: preCompactHook,\n script: sessionScriptInstalled,\n path: projectSettingsPath,\n },\n projectHooks: {\n installed: projectHooksInstalled,\n postToolUse: postToolUseHook,\n hookScript: hookScriptInstalled,\n path: projectSettingsPath,\n },\n skill: { installed: skillInstalled, path: skillPath },\n },\n () => {\n const colors = this.output.getColors();\n renderDiagnostics(diagnostics, colors);\n },\n );\n }\n\n private async removeClaudeSetup(skillPath: string): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n const claudePaths = getClaudePaths(cwd);\n let removedHooks = false;\n let removedScripts = false;\n let removedSkill = false;\n\n // Remove hooks from project .claude/settings.json\n try {\n await access(claudePaths.settings);\n const content = await readFile(claudePaths.settings, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n\n if (settings.hooks) {\n const hooks = settings.hooks as Record<string, unknown>;\n\n // Remove all tbd hooks (SessionStart, PreCompact, PostToolUse)\n const filterTbdHooks = (arr: { hooks?: { command?: string }[] }[] \| undefined) => {\n if (!arr) return undefined;\n return arr.filter(\n (h) =>\n !h.hooks?.some(\n (hook) =>\n (hook.command?.includes('tbd-closing-reminder') ?? false) \|\|\n (hook.command?.includes('tbd-session.sh') ?? false) \|\|\n (hook.command?.includes('tbd prime') ?? false),\n ),\n );\n };\n\n for (const hookType of ['PostToolUse', 'SessionStart', 'PreCompact'] as const) {\n const filtered = filterTbdHooks(hooks[hookType] as { hooks?: { command?: string }[] }[]);\n if (filtered?.length === 0) delete hooks[hookType];\n else if (filtered) hooks[hookType] = filtered;\n }\n\n if (Object.keys(hooks).length === 0) {\n delete settings.hooks;\n }\n\n await writeFile(claudePaths.settings, JSON.stringify(settings, null, 2) + '\\n');\n removedHooks = true;\n }\n } catch {\n // Project settings file doesn't exist\n }\n\n // Remove hook script\n try {\n await rm(claudePaths.closingReminder);\n removedHooks = true;\n } catch {\n // Hook script doesn't exist\n }\n\n // Remove tbd scripts from project\n try {\n await rm(claudePaths.sessionScript);\n removedScripts = true;\n } catch {\n // Script doesn't exist\n }\n\n // Remove skill file from project\n try {\n await rm(skillPath);\n removedSkill = true;\n } catch {\n // Skill file doesn't exist\n }\n\n // Report what was removed\n if (removedHooks \|\| removedScripts) {\n this.output.success('Removed hooks and scripts');\n } else {\n this.output.info('No hooks to remove');\n }\n\n if (removedSkill) {\n this.output.success('Removed skill file');\n } else {\n this.output.info('No skill file to remove');\n }\n }\n\n private async installClaudeSetup(skillPath: string): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n const claudePaths = getClaudePaths(cwd);\n\n if (\n this.checkDryRun('Would install Claude Code hooks and skill file', {\n settingsPath: claudePaths.settings,\n skillPath,\n })\n ) {\n return;\n }\n\n try {\n // Always install to project .claude/ directory (create if needed).\n // This avoids confusion between global vs project-level settings and\n // ensures hooks work in any environment (local dev, Claude Code Cloud, etc.).\n await mkdir(claudePaths.dir, { recursive: true });\n\n // Read existing project settings\n let settings: Record<string, unknown> = {};\n try {\n await access(claudePaths.settings);\n const content = await readFile(claudePaths.settings, 'utf-8');\n settings = JSON.parse(content) as Record<string, unknown>;\n } catch {\n // File doesn't exist, start fresh\n }\n\n // Merge session hooks (SessionStart, PreCompact) - append without overwriting\n const existingHooks = (settings.hooks as Record<string, unknown[]>) \|\| {};\n const newHooks = CLAUDE_SESSION_HOOKS.hooks as Record<string, unknown[]>;\n const mergedHooks: Record<string, unknown[]> = { ...existingHooks };\n\n for (const [hookType, hookEntries] of Object.entries(newHooks)) {\n if (mergedHooks[hookType]) {\n // Filter out any existing tbd-session.sh hooks before adding new ones\n const filtered = (mergedHooks[hookType] as { hooks?: { command?: string }[] }[]).filter(\n (entry) => !entry.hooks?.some((h) => h.command?.includes('tbd-session.sh')),\n );\n mergedHooks[hookType] = [...filtered, ...hookEntries];\n } else {\n mergedHooks[hookType] = hookEntries;\n }\n }\n\n // Merge PostToolUse hooks\n const projectHooks = CLAUDE_PROJECT_HOOKS.hooks as Record<string, unknown[]>;\n for (const [hookType, hookEntries] of Object.entries(projectHooks)) {\n mergedHooks[hookType] ??= hookEntries;\n }\n\n settings.hooks = mergedHooks;\n\n // Manage gh CLI SessionStart hook based on use_gh_cli config setting\n const useGhCli = await this.getUseGhCliSetting();\n const finalHooks = settings.hooks as Record<string, unknown>;\n let sessionStartEntries = (finalHooks.SessionStart as Record<string, unknown>[]) \|\| [];\n\n if (useGhCli) {\n // Add gh CLI hook if not already present\n const hasGhCliHook = sessionStartEntries.some((h: Record<string, unknown>) =>\n (h.hooks as { command?: string }[])?.some((hook) =>\n hook.command?.includes(GH_CLI_HOOK_COMMAND_PATTERN),\n ),\n );\n if (!hasGhCliHook) {\n sessionStartEntries = [...sessionStartEntries, GH_CLI_HOOK_ENTRY];\n }\n\n // Install the script file\n await mkdir(claudePaths.scriptsDir, { recursive: true });\n const ghScriptContent = await loadBundledScript('ensure-gh-cli.sh');\n await writeFile(claudePaths.ghCliScript, ghScriptContent);\n await chmod(claudePaths.ghCliScript, 0o755);\n this.output.success('Installed gh CLI setup script');\n } else {\n // Remove gh CLI hook entries\n sessionStartEntries = sessionStartEntries.filter(\n (h: Record<string, unknown>) =>\n !(h.hooks as { command?: string }[])?.some((hook) =>\n hook.command?.includes(GH_CLI_HOOK_COMMAND_PATTERN),\n ),\n );\n\n // Remove the script file\n try {\n await rm(claudePaths.ghCliScript);\n this.output.success('Removed gh CLI setup script');\n } catch {\n // Script doesn't exist, ignore\n }\n }\n\n if (sessionStartEntries.length > 0) {\n finalHooks.SessionStart = sessionStartEntries;\n } else {\n delete finalHooks.SessionStart;\n }\n\n // Write all hooks to project settings in a single write\n await writeFile(claudePaths.settings, JSON.stringify(settings, null, 2) + '\\n');\n this.output.success('Installed hooks to .claude/settings.json');\n\n // Install tbd-session.sh script\n await mkdir(claudePaths.scriptsDir, { recursive: true });\n await writeFile(claudePaths.sessionScript, TBD_SESSION_SCRIPT);\n await chmod(claudePaths.sessionScript, 0o755);\n\n // Clean up legacy scripts in project\n const legacyScripts = ['ensure-tbd-cli.sh', 'setup-tbd.sh', 'ensure-tbd.sh'];\n for (const script of legacyScripts) {\n try {\n await rm(join(claudePaths.scriptsDir, script));\n } catch {\n // Script doesn't exist, ignore\n }\n }\n\n this.output.success('Installed tbd session script to .claude/scripts/');\n\n // Add .claude/.gitignore to ignore backup files\n // NOTE: Pattern re-addition is intentional - see comment in initializeTbd\n const claudeGitignorePath = join(claudePaths.dir, '.gitignore');\n const claudeGitignoreResult = await ensureGitignorePatterns(claudeGitignorePath, [\n '# Backup files',\n '.bak',\n ]);\n if (claudeGitignoreResult.created) {\n this.output.success('Created .claude/.gitignore');\n } else if (claudeGitignoreResult.added.length > 0) {\n this.output.success('Updated .claude/.gitignore');\n }\n // else: file is up-to-date, no message needed\n\n // Install hook script\n await mkdir(claudePaths.hooksDir, { recursive: true });\n await writeFile(claudePaths.closingReminder, TBD_CLOSE_PROTOCOL_SCRIPT);\n await chmod(claudePaths.closingReminder, 0o755);\n this.output.success('Installed sync reminder hook script');\n\n // Install skill file in project (with shortcut directory appended)\n await mkdir(dirname(skillPath), { recursive: true });\n let skillContent = await loadSkillContent();\n const directory = await getShortcutDirectory(this.ctx.quiet);\n if (directory) {\n skillContent = skillContent.trimEnd() + '\\n\\n' + directory;\n }\n // Insert DO NOT EDIT marker after frontmatter (formatted to match flowmark output)\n const markerComment =\n \"<!-- DO NOT EDIT: Generated by tbd setup.\\nRun 'tbd setup' to update.\\n-->\";\n skillContent = insertAfterFrontmatter(skillContent, markerComment);\n // Ensure file ends with newline\n skillContent = skillContent.trimEnd() + '\\n';\n await writeFile(skillPath, skillContent);\n this.output.success('Installed skill file');\n this.output.info(` ${skillPath}`);\n\n this.output.info('');\n this.output.info('What was installed:');\n this.output.info(' - Session hooks: SessionStart and PreCompact run `tbd prime`');\n this.output.info(' - Session script: .claude/scripts/tbd-session.sh');\n this.output.info(' - Project hooks: PostToolUse reminds about `tbd sync` after git push');\n this.output.info(' - Project skill: .claude/skills/tbd/SKILL.md');\n } catch (error) {\n throw new CLIError(`Failed to install: ${(error as Error).message}`);\n }\n }\n\n /\n Read the use_gh_cli setting from config. Defaults to true if not set or if\n * tbd is not yet initialized (so fresh setup installs gh CLI by default).\n /\n private async getUseGhCliSetting(): Promise<boolean> {\n try {\n const tbdRoot = await findTbdRoot(process.cwd());\n if (!tbdRoot) return true;\n const config = await readConfig(tbdRoot);\n return config.settings.use_gh_cli ?? true;\n } catch {\n return true;\n }\n }\n}\n\nclass SetupCodexHandler extends BaseCommand {\n private projectDir: string \| undefined;\n\n setProjectDir(dir: string): void {\n this.projectDir = dir;\n }\n\n async run(options: SetupCodexOptions): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n const agentsPath = join(cwd, 'AGENTS.md');\n\n if (options.check) {\n await this.checkCodexSetup(agentsPath);\n return;\n }\n\n if (options.remove) {\n await this.removeCodexSection(agentsPath);\n return;\n }\n\n await this.installCodexSection(agentsPath);\n }\n\n private async checkCodexSetup(agentsPath: string): Promise<void> {\n const agentsRelPath = './AGENTS.md';\n try {\n await access(agentsPath);\n const content = await readFile(agentsPath, 'utf-8');\n\n if (content.includes(CODEX_BEGIN_MARKER)) {\n const diagnostic: DiagnosticResult = {\n name: 'AGENTS.md',\n status: 'ok',\n message: 'tbd section found',\n path: agentsRelPath,\n };\n this.output.data({ installed: true, path: agentsPath, hastbdSection: true }, () => {\n const colors = this.output.getColors();\n renderDiagnostics([diagnostic], colors);\n });\n } else {\n const diagnostic: DiagnosticResult = {\n name: 'AGENTS.md',\n status: 'warn',\n message: 'exists but no tbd section',\n path: agentsRelPath,\n suggestion: 'Run: tbd setup --auto',\n };\n this.output.data({ installed: false, path: agentsPath, hastbdSection: false }, () => {\n const colors = this.output.getColors();\n renderDiagnostics([diagnostic], colors);\n });\n }\n } catch {\n const diagnostic: DiagnosticResult = {\n name: 'AGENTS.md',\n status: 'warn',\n message: 'not found',\n path: agentsRelPath,\n suggestion: 'Run: tbd setup --auto',\n };\n this.output.data({ installed: false, expectedPath: agentsPath }, () => {\n const colors = this.output.getColors();\n renderDiagnostics([diagnostic], colors);\n });\n }\n }\n\n private async removeCodexSection(agentsPath: string): Promise<void> {\n try {\n await access(agentsPath);\n const content = await readFile(agentsPath, 'utf-8');\n\n if (!content.includes(CODEX_BEGIN_MARKER)) {\n this.output.info('No tbd section found in AGENTS.md');\n return;\n }\n\n const newContent = this.removetbdSection(content);\n const trimmed = newContent.trim();\n\n if (trimmed === '' \|\| trimmed === '# Project Instructions for AI Agents') {\n // File is empty or only has the default header, remove it\n await rm(agentsPath);\n this.output.success('Removed AGENTS.md (file was empty after removing tbd section)');\n } else {\n await writeFile(agentsPath, newContent);\n this.output.success('Removed tbd section from AGENTS.md');\n }\n } catch {\n this.output.info('AGENTS.md not found');\n }\n }\n\n private async installCodexSection(agentsPath: string): Promise<void> {\n if (this.checkDryRun('Would create/update AGENTS.md', { path: agentsPath })) {\n return;\n }\n\n try {\n let existingContent = '';\n try {\n await access(agentsPath);\n existingContent = await readFile(agentsPath, 'utf-8');\n } catch {\n // File doesn't exist\n }\n\n let newContent: string;\n\n const tbdSection = await getCodexTbdSection(this.ctx.quiet);\n\n if (existingContent) {\n if (existingContent.includes(CODEX_BEGIN_MARKER)) {\n // Update existing section\n newContent = this.updatetbdSection(existingContent, tbdSection);\n await writeFile(agentsPath, newContent);\n this.output.success('Updated existing tbd section in AGENTS.md');\n } else {\n // Append section to existing file\n newContent = existingContent + '\\n\\n' + tbdSection;\n await writeFile(agentsPath, newContent);\n this.output.success('Added tbd section to existing AGENTS.md');\n }\n } else {\n // Create new file\n const newAgentsFile = await getCodexNewAgentsFile(this.ctx.quiet);\n await writeFile(agentsPath, newAgentsFile);\n this.output.success('Created new AGENTS.md with tbd integration');\n }\n\n this.output.info(` File: ${agentsPath}`);\n this.output.info('');\n this.output.info('Codex and other AGENTS.md-compatible tools will automatically');\n this.output.info('read this file on session start.');\n } catch (error) {\n throw new CLIError(`Failed to update AGENTS.md: ${(error as Error).message}`);\n }\n }\n\n private updatetbdSection(content: string, tbdSection: string): string {\n const startIdx = content.indexOf(CODEX_BEGIN_MARKER);\n const endIdx = content.indexOf(CODEX_END_MARKER);\n\n if (startIdx === -1 \|\| endIdx === -1 \|\| startIdx > endIdx) {\n // Markers not found or invalid, append instead\n return content + '\\n\\n' + tbdSection;\n }\n\n // Find the end of the end marker line\n let endOfEndMarker = endIdx + CODEX_END_MARKER.length;\n const nextNewline = content.indexOf('\\n', endOfEndMarker);\n if (nextNewline !== -1) {\n endOfEndMarker = nextNewline + 1;\n }\n\n return content.slice(0, startIdx) + tbdSection + content.slice(endOfEndMarker);\n }\n\n private removetbdSection(content: string): string {\n const startIdx = content.indexOf(CODEX_BEGIN_MARKER);\n const endIdx = content.indexOf(CODEX_END_MARKER);\n\n if (startIdx === -1 \|\| endIdx === -1 \|\| startIdx > endIdx) {\n return content;\n }\n\n // Find the end of the end marker line\n let endOfEndMarker = endIdx + CODEX_END_MARKER.length;\n const nextNewline = content.indexOf('\\n', endOfEndMarker);\n if (nextNewline !== -1) {\n endOfEndMarker = nextNewline + 1;\n }\n\n // Also remove leading blank lines before the section\n let trimStart = startIdx;\n while (trimStart > 0 && (content[trimStart - 1] === '\\n' \|\| content[trimStart - 1] === '\\r')) {\n trimStart--;\n }\n\n return content.slice(0, trimStart) + content.slice(endOfEndMarker);\n }\n}\n\n// ============================================================================\n// Setup Default Handler (for --auto and --interactive modes)\n// ============================================================================\n\ninterface SetupDefaultOptions {\n auto?: boolean;\n interactive?: boolean;\n fromBeads?: boolean;\n prefix?: string;\n ghCli?: boolean; // Commander sets to false when --no-gh-cli is passed\n}\n\n/\n Default handler for `tbd setup` with --auto or --interactive flags.\n \n This implements the unified onboarding flow:\n * - `tbd setup --auto`: Non-interactive setup with smart defaults (for agents)\n * - `tbd setup --interactive`: Interactive setup with prompts (for humans)\n \n Decision tree:\n * 1. Not in git repo → Error (git init first)\n * 2. Resolve to git root → All paths relative to .git/ parent\n * 3. Has .tbd/ → Already initialized, check/update integrations\n * 4. Has .beads/ → Beads migration flow\n * 5. Fresh repo → Initialize + configure integrations\n /\nclass SetupDefaultHandler extends BaseCommand {\n private cmd: Command;\n\n constructor(command: Command) {\n super(command);\n this.cmd = command;\n }\n\n async run(options: SetupDefaultOptions): Promise<void> {\n const colors = this.output.getColors();\n const cwd = process.cwd();\n\n // Determine mode\n const isAutoMode = options.auto === true;\n // Note: options.interactive will be used when we add interactive prompts\n\n // Header\n console.log(colors.bold('tbd: Git-native issue tracking for AI agents and humans'));\n console.log('');\n\n // Check if in git repo and resolve to git root\n const inGitRepo = await isInGitRepo(cwd);\n if (!inGitRepo) {\n throw new CLIError('Not a git repository. Run `git init` first.');\n }\n\n // Resolve to git root so .tbd/ and .claude/ are always adjacent to .git/\n const gitRoot = await findGitRoot(cwd);\n if (!gitRoot) {\n throw new CLIError('Could not determine git repository root.');\n }\n\n // Use git root as the working directory for all setup operations\n const projectDir = gitRoot;\n\n // Check current state\n const hasTbd = await isInitialized(projectDir);\n const hasBeads = await pathExists(join(projectDir, '.beads'));\n\n // Validate --from-beads flag requires .beads/ directory\n if (options.fromBeads && !hasBeads) {\n throw new CLIError(\n 'The --from-beads flag requires a .beads/ directory to migrate from.\\n' +\n 'For fresh setup, use: tbd setup --auto --prefix=<name>',\n );\n }\n\n console.log('Checking repository...');\n console.log(` ${colors.success('✓')} Git repository detected`);\n\n if (hasTbd) {\n // Already initialized flow - check for migrations\n const { config, migrated, changes } = await readConfigWithMigration(projectDir);\n console.log(` ${colors.success('✓')} tbd initialized (prefix: ${config.display.id_prefix})`);\n\n // Apply --no-gh-cli flag to config if specified\n let needsConfigWrite = migrated;\n if (options.ghCli === false && config.settings.use_gh_cli !== false) {\n config.settings.use_gh_cli = false;\n needsConfigWrite = true;\n }\n\n // Persist config if migrated or --no-gh-cli was applied\n if (needsConfigWrite) {\n await writeConfig(projectDir, config);\n if (migrated) {\n console.log(` ${colors.success('✓')} Config migrated to latest format`);\n for (const change of changes) {\n console.log(` ${colors.dim(change)}`);\n }\n }\n if (options.ghCli === false) {\n console.log(` ${colors.success('✓')} Disabled gh CLI auto-setup`);\n }\n }\n\n console.log('');\n await this.handleAlreadyInitialized(projectDir, isAutoMode);\n } else if ((hasBeads \|\| options.fromBeads) && !options.prefix) {\n // Beads migration flow (unless prefix override given)\n console.log(` ${colors.dim('✗')} tbd not initialized`);\n console.log(` ${colors.warn('!')} Beads detected (.beads/ directory found)`);\n console.log('');\n await this.handleBeadsMigration(projectDir, isAutoMode, options);\n } else {\n // Fresh setup flow\n console.log(` ${colors.dim('✗')} tbd not initialized`);\n console.log('');\n await this.handleFreshSetup(projectDir, isAutoMode, options);\n }\n }\n\n private async handleAlreadyInitialized(projectDir: string, _isAutoMode: boolean): Promise<void> {\n const colors = this.output.getColors();\n\n // Ensure .tbd/.gitignore is up-to-date (may have new patterns from newer versions)\n const tbdGitignoreResult = await ensureGitignorePatterns(\n join(projectDir, TBD_DIR, '.gitignore'),\n [\n '# Synced documentation cache (regenerated by tbd sync --docs)',\n 'docs/',\n '',\n '# Hidden worktree for tbd-sync branch',\n `${WORKTREE_DIR_NAME}/`,\n '',\n '# Data sync directory (only exists in worktree)',\n `${DATA_SYNC_DIR_NAME}/`,\n '',\n '# Local state',\n 'state.yml',\n '',\n '# Migration backups (local only, not synced)',\n 'backups/',\n '',\n '# Temporary files',\n '.tmp',\n '.temp',\n ],\n );\n if (tbdGitignoreResult.created) {\n console.log(` ${colors.success('✓')} Created .tbd/.gitignore`);\n } else if (tbdGitignoreResult.added.length > 0) {\n console.log(` ${colors.success('✓')} Updated .tbd/.gitignore with new patterns`);\n }\n\n console.log('Checking integrations...');\n\n // Use SetupAutoHandler to configure integrations\n const autoHandler = new SetupAutoHandler(this.cmd);\n await autoHandler.run(projectDir);\n\n console.log('');\n console.log(colors.success('All set!'));\n }\n\n private async handleBeadsMigration(\n cwd: string,\n isAutoMode: boolean,\n options: SetupDefaultOptions,\n ): Promise<void> {\n const colors = this.output.getColors();\n\n if (isAutoMode) {\n console.log(` ${colors.warn('!')} Beads detected - auto-migrating`);\n console.log('');\n }\n\n // Get prefix from beads config or use provided --prefix\n const beadsPrefix = await getBeadsPrefix(cwd);\n const prefix = options.prefix ?? beadsPrefix;\n\n if (!prefix) {\n throw new CLIError(\n 'Could not read prefix from beads config.\\n' +\n 'Please specify a prefix (2-4 letters recommended):\\n' +\n ' tbd setup --auto --prefix=tbd',\n );\n }\n\n if (!isValidPrefix(prefix)) {\n throw new CLIError(\n 'Invalid prefix format.\\n' +\n 'Prefix must be 1-10 lowercase alphanumeric characters, starting with a letter.\\n' +\n 'Recommended: 2-4 letters for clear, readable issue IDs.\\n' +\n 'Please specify a valid prefix:\\n' +\n ' tbd setup --auto --prefix=tbd',\n );\n }\n\n // Initialize tbd first\n await this.initializeTbd(cwd, prefix);\n\n // Apply --no-gh-cli flag to newly created config\n if (options.ghCli === false) {\n const config = await readConfig(cwd);\n config.settings.use_gh_cli = false;\n await writeConfig(cwd, config);\n console.log(` ${colors.success('✓')} Disabled gh CLI auto-setup`);\n }\n\n // Import beads issues from the JSONL file\n console.log('Importing from Beads...');\n const beadsDir = join(cwd, '.beads');\n const jsonlPath = join(beadsDir, 'issues.jsonl');\n\n try {\n await access(jsonlPath);\n // Import directly from the JSONL file (tbd is already initialized)\n const result = spawnSync('tbd', ['import', jsonlPath, '--verbose'], {\n cwd,\n stdio: 'inherit',\n });\n if (result.status !== 0) {\n console.log(colors.warn('Warning: Some issues may not have imported correctly'));\n }\n } catch {\n console.log(colors.dim(' No issues.jsonl found - skipping import'));\n }\n\n // Disable beads\n await this.disableBeads(cwd);\n\n console.log('');\n console.log('Configuring integrations...');\n\n // Configure integrations\n const autoHandler = new SetupAutoHandler(this.cmd);\n await autoHandler.run(cwd);\n\n console.log('');\n console.log(colors.success('Setup complete!'));\n\n this.showWhatsNext(colors);\n\n // Show dashboard after setup\n spawnSync('tbd', ['prime'], { stdio: 'inherit' });\n\n // Mark welcome as seen since the user got the full onboarding experience\n try {\n await markWelcomeSeen(cwd);\n } catch {\n // Non-critical: don't fail setup if state write fails\n }\n }\n\n private async handleFreshSetup(\n cwd: string,\n isAutoMode: boolean,\n options: SetupDefaultOptions,\n ): Promise<void> {\n const colors = this.output.getColors();\n\n // Require --prefix for fresh setup (no auto-detection)\n const prefix = options.prefix;\n\n if (!prefix) {\n throw new CLIError(\n '--prefix is required for tbd setup --auto\\n\\n' +\n 'The --prefix flag specifies your project name for issue IDs.\\n' +\n 'Use a short 2-4 letter prefix so issue IDs stand out clearly.\\n\\n' +\n 'Example:\\n' +\n ' tbd setup --auto --prefix=tbd # Issues: tbd-a1b2\\n' +\n ' tbd setup --auto --prefix=myp # Issues: myp-c3d4\\n\\n' +\n 'Note: If migrating from beads, the prefix is automatically read from your beads config.',\n );\n }\n\n if (!isValidPrefix(prefix)) {\n throw new CLIError(\n 'Invalid prefix format.\\n' +\n 'Prefix must be 1-10 lowercase alphanumeric characters, starting with a letter.\\n' +\n 'Recommended: 2-4 letters for clear, readable issue IDs.\\n\\n' +\n 'Example:\\n' +\n ' tbd setup --auto --prefix=tbd',\n );\n }\n\n console.log(`Initializing with prefix \"${prefix}\"...`);\n\n await this.initializeTbd(cwd, prefix);\n\n // Apply --no-gh-cli flag to newly created config\n if (options.ghCli === false) {\n const config = await readConfig(cwd);\n config.settings.use_gh_cli = false;\n await writeConfig(cwd, config);\n console.log(` ${colors.success('✓')} Disabled gh CLI auto-setup`);\n }\n\n console.log('');\n console.log('Configuring integrations...');\n\n // Configure integrations\n const autoHandler = new SetupAutoHandler(this.cmd);\n await autoHandler.run(cwd);\n\n console.log('');\n console.log(colors.success('Setup complete!'));\n\n this.showWhatsNext(colors);\n\n // Show dashboard after setup\n spawnSync('tbd', ['prime'], { stdio: 'inherit' });\n\n // Mark welcome as seen since the user got the full onboarding experience\n try {\n await markWelcomeSeen(cwd);\n } catch {\n // Non-critical: don't fail setup if state write fails\n }\n }\n\n /\n Show \"What's Next\" guidance after setup completion.\n * Framed as what users can SAY to get help, not as CLI commands to run.\n /\n private showWhatsNext(colors: ReturnType<typeof this.output.getColors>): void {\n console.log('');\n console.log(colors.bold(\"WHAT'S NEXT\"));\n console.log('');\n console.log(' Try saying things like:');\n console.log(' \"There\\'s a bug where ...\" → Creates and tracks a bug');\n console.log(' \"Let\\'s plan a new feature\" → Walks through a planning spec');\n console.log(' \"Let\\'s work on current issues\" → Shows ready issues to tackle');\n console.log(' \"Commit this code\" → Reviews and commits properly');\n console.log(' \"Review for best practices\" → Code review with guidelines');\n console.log('');\n }\n\n private async initializeTbd(cwd: string, prefix: string): Promise<void> {\n const colors = this.output.getColors();\n\n // 1. Create .tbd/ directory with config.yml\n await initConfig(cwd, VERSION, prefix);\n console.log(` ${colors.success('✓')} Created .tbd/config.yml`);\n\n // 2. Create/update .tbd/.gitignore (idempotent)\n // NOTE: Pattern re-addition is intentional - these are tool-managed files\n // that are regenerated from the npm package on every setup. If a user removes\n // a pattern, we re-add it because tracking these directories in git would\n // cause noise on every tbd upgrade.\n const tbdGitignoreResult = await ensureGitignorePatterns(join(cwd, TBD_DIR, '.gitignore'), [\n '# Synced documentation cache (regenerated by tbd sync --docs)',\n 'docs/',\n '',\n '# Hidden worktree for tbd-sync branch',\n `${WORKTREE_DIR_NAME}/`,\n '',\n '# Data sync directory (only exists in worktree)',\n `${DATA_SYNC_DIR_NAME}/`,\n '',\n '# Local state',\n 'state.yml',\n '',\n '# Migration backups (local only, not synced)',\n 'backups/',\n '',\n '# Temporary files',\n '.tmp',\n '.temp',\n ]);\n if (tbdGitignoreResult.created) {\n console.log(` ${colors.success('✓')} Created .tbd/.gitignore`);\n } else if (tbdGitignoreResult.added.length > 0) {\n console.log(` ${colors.success('✓')} Updated .tbd/.gitignore`);\n }\n // else: file is up-to-date, no message needed\n\n // 3. Initialize worktree for sync branch\n try {\n await initWorktree(cwd);\n\n // Verify worktree health after creation (prevents silent failures)\n const health = await checkWorktreeHealth(cwd);\n if (health.valid) {\n console.log(` ${colors.success('✓')} Initialized sync branch`);\n } else {\n console.log(\n ` ${colors.warn('!')} Sync branch created but verification failed (status: ${health.status})`,\n );\n console.log(` Run 'tbd doctor' to diagnose`);\n }\n } catch {\n // Non-fatal - sync will work, just not optimally\n console.log(` ${colors.dim('○')} Sync branch will be created on first sync`);\n }\n }\n\n private async disableBeads(cwd: string): Promise<void> {\n const colors = this.output.getColors();\n\n // Move .beads to .beads-disabled\n const beadsDir = join(cwd, '.beads');\n const disabledDir = join(cwd, '.beads-disabled');\n\n try {\n await rename(beadsDir, disabledDir);\n console.log(` ${colors.success('✓')} Disabled beads (moved to .beads-disabled/)`);\n } catch {\n console.log(` ${colors.dim('○')} Could not move .beads directory`);\n }\n }\n}\n\n// ============================================================================\n// Auto Setup Command\n// ============================================================================\n\ninterface AutoSetupResult {\n name: string;\n detected: boolean;\n installed: boolean;\n alreadyInstalled: boolean;\n error?: string;\n}\n\nclass SetupAutoHandler extends BaseCommand {\n private cmd: Command;\n\n constructor(command: Command) {\n super(command);\n this.cmd = command;\n }\n\n /\n Clean up legacy scripts from project .claude/scripts/ directory.\n * This runs during any setup, regardless of whether Claude Code is detected,\n * since we want to clean up old project-level scripts that are no longer needed.\n /\n private async cleanupLegacyProjectScripts(cwd: string): Promise<string[]> {\n const scriptsDir = join(cwd, '.claude', 'scripts');\n const scriptsRemoved: string[] = [];\n\n try {\n await access(scriptsDir);\n const entries = await readdir(scriptsDir, { withFileTypes: true });\n\n for (const entry of entries) {\n if (entry.isFile()) {\n const filename = entry.name;\n // Check against known legacy script names\n if (LEGACY_TBD_SCRIPTS.includes(filename)) {\n try {\n await rm(join(scriptsDir, filename));\n scriptsRemoved.push(filename);\n } catch {\n // Ignore removal errors\n }\n }\n }\n }\n } catch {\n // Scripts directory doesn't exist, nothing to clean\n }\n\n return scriptsRemoved;\n }\n\n /\n Filter out hook entries that match legacy tbd patterns from project settings.\n /\n private filterLegacyHooks(\n hookList: { hooks?: { command?: string }[] }[],\n ): { hooks?: { command?: string }[] }[] {\n return hookList.filter((entry) => {\n // Check if any hook command matches legacy patterns\n const hasLegacyCommand = entry.hooks?.some((hook) => {\n if (!hook.command) return false;\n return LEGACY_TBD_HOOK_PATTERNS.some((pattern) => pattern.test(hook.command!));\n });\n // Keep entries that DON'T have legacy commands\n return !hasLegacyCommand;\n });\n }\n\n /\n Clean up legacy hooks from project .claude/settings.json.\n * This runs during any setup, regardless of whether Claude Code is detected.\n /\n private async cleanupLegacyProjectHooks(cwd: string): Promise<number> {\n const projectSettingsPath = join(cwd, '.claude', 'settings.json');\n let hooksRemoved = 0;\n\n try {\n await access(projectSettingsPath);\n const content = await readFile(projectSettingsPath, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n\n if (settings.hooks) {\n const hooks = settings.hooks as Record<string, unknown>;\n let modified = false;\n\n for (const hookType of ['SessionStart', 'PreCompact', 'PostToolUse']) {\n if (hooks[hookType]) {\n const hookList = hooks[hookType] as { hooks?: { command?: string }[] }[];\n const filtered = this.filterLegacyHooks(hookList);\n if (filtered.length !== hookList.length) {\n hooksRemoved += hookList.length - filtered.length;\n hooks[hookType] = filtered.length > 0 ? filtered : undefined;\n if (!hooks[hookType]) delete hooks[hookType];\n modified = true;\n }\n }\n }\n\n if (modified) {\n if (Object.keys(hooks).length === 0) {\n delete settings.hooks;\n }\n await writeFile(projectSettingsPath, JSON.stringify(settings, null, 2) + '\\n');\n }\n }\n } catch {\n // Project settings file doesn't exist, nothing to clean\n }\n\n return hooksRemoved;\n }\n\n async run(projectDir?: string): Promise<void> {\n const colors = this.output.getColors();\n const cwd = projectDir ?? process.cwd();\n const results: AutoSetupResult[] = [];\n\n // Clean up legacy project-level scripts and hooks FIRST,\n // regardless of whether any coding agent is detected.\n // This ensures old tbd scripts are removed even if user switches tools.\n const scriptsRemoved = await this.cleanupLegacyProjectScripts(cwd);\n const hooksRemoved = await this.cleanupLegacyProjectHooks(cwd);\n if (scriptsRemoved.length > 0 \|\| hooksRemoved > 0) {\n const parts = [];\n if (scriptsRemoved.length > 0) parts.push(`${scriptsRemoved.length} script(s)`);\n if (hooksRemoved > 0) parts.push(`${hooksRemoved} hook(s)`);\n console.log(colors.dim(`Cleaned up legacy ${parts.join(' and ')}`));\n }\n\n // Sync docs using DocSync\n await this.syncDocs(cwd);\n\n // Detect and set up Claude Code\n const claudeResult = await this.setupClaudeIfDetected(cwd);\n results.push(claudeResult);\n\n // Detect and set up Codex/AGENTS.md (also used by Cursor since v1.6)\n const codexResult = await this.setupCodexIfDetected(cwd);\n results.push(codexResult);\n\n // Report results\n const installed = results.filter((r) => r.installed && !r.alreadyInstalled);\n const alreadyInstalled = results.filter((r) => r.alreadyInstalled);\n const skipped = results.filter((r) => !r.detected);\n\n if (installed.length > 0) {\n console.log(colors.bold('Configured integrations:'));\n for (const r of installed) {\n console.log(` ${colors.success('✓')} ${r.name}`);\n }\n }\n\n if (alreadyInstalled.length > 0) {\n console.log(colors.dim('Already configured:'));\n for (const r of alreadyInstalled) {\n console.log(` ${colors.dim('✓')} ${r.name}`);\n }\n }\n\n if (skipped.length > 0 && (installed.length > 0 \|\| alreadyInstalled.length > 0)) {\n console.log(colors.dim('Not detected (skipped):'));\n for (const r of skipped) {\n console.log(` ${colors.dim('-')} ${r.name}`);\n }\n }\n\n if (installed.length === 0 && alreadyInstalled.length === 0) {\n console.log(colors.dim('No coding agents detected.'));\n console.log('');\n console.log(\n 'Install a coding agent (Claude Code, Codex, or any AGENTS.md-compatible tool) and re-run:',\n );\n console.log(' tbd setup --auto');\n }\n }\n\n /\n Sync docs using syncDocsWithDefaults.\n * Uses the shared function that merges bundled defaults, prunes stale entries,\n * syncs files, and updates config.\n /\n private async syncDocs(cwd: string): Promise<void> {\n const colors = this.output.getColors();\n\n // Ensure docs directories exist\n await mkdir(join(cwd, TBD_SHORTCUTS_SYSTEM), { recursive: true });\n await mkdir(join(cwd, TBD_SHORTCUTS_STANDARD), { recursive: true });\n await mkdir(join(cwd, TBD_GUIDELINES_DIR), { recursive: true });\n await mkdir(join(cwd, TBD_TEMPLATES_DIR), { recursive: true });\n\n // Use shared sync function that handles:\n // - Merging bundled defaults with user config\n // - Pruning stale internal entries\n // - Syncing files to .tbd/docs/\n // - Writing config if changed\n // - Updating last_doc_sync_at in state\n const result = await syncDocsWithDefaults(cwd);\n\n // Report sync results\n if (result.configChanged) {\n console.log(colors.dim('Updated docs_cache config'));\n }\n\n const total = result.added.length + result.updated.length;\n if (total > 0) {\n console.log(colors.dim(`Synced ${total} doc(s) to ${TBD_DOCS_DIR}/`));\n }\n if (result.removed.length > 0) {\n console.log(colors.dim(`Removed ${result.removed.length} outdated doc(s)`));\n }\n if (result.pruned.length > 0) {\n console.log(colors.dim(`Pruned ${result.pruned.length} stale config entry/entries`));\n }\n if (result.errors.length > 0) {\n for (const { path, error } of result.errors) {\n console.log(colors.warn(`Warning: ${path}: ${error}`));\n }\n }\n }\n\n private async setupClaudeIfDetected(cwd: string): Promise<AutoSetupResult> {\n const result: AutoSetupResult = {\n name: 'Claude Code',\n detected: false,\n installed: false,\n alreadyInstalled: false,\n };\n\n // Detect Claude Code: check for ~/.claude/ directory or CLAUDE_ env vars\n // Note: We check global dir for DETECTION only, not for installation\n const hasClaudeDir = await pathExists(GLOBAL_CLAUDE_DIR);\n const hasClaudeEnv = Object.keys(process.env).some((k) => k.startsWith('CLAUDE_'));\n\n if (!hasClaudeDir && !hasClaudeEnv) {\n return result;\n }\n\n result.detected = true;\n\n // Check if already installed (project-local settings - all installs are project-local)\n const claudePaths = getClaudePaths(cwd);\n\n try {\n if (await pathExists(claudePaths.settings)) {\n const content = await readFile(claudePaths.settings, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n const hooks = settings.hooks as Record<string, unknown> \| undefined;\n if (hooks) {\n const sessionStart = hooks.SessionStart as { hooks?: { command?: string }[] }[];\n const hasTbdHook = sessionStart?.some((h) =>\n h.hooks?.some(\n (hook) =>\n (hook.command?.includes('tbd prime') ?? false) \|\|\n (hook.command?.includes('tbd-session.sh') ?? false),\n ),\n );\n if (hasTbdHook && (await pathExists(claudePaths.skill))) {\n result.alreadyInstalled = true;\n // Note: We still run the handler to update the skill file content\n // even if hooks are already installed. This ensures users get the\n // latest skill file when running `tbd setup --auto`.\n }\n }\n }\n\n // Install/update Claude Code setup (always runs to update skill file)\n const handler = new SetupClaudeHandler(this.cmd);\n handler.setProjectDir(cwd);\n await handler.run({});\n result.installed = true;\n } catch (error) {\n result.error = (error as Error).message;\n }\n\n return result;\n }\n\n private async setupCodexIfDetected(cwd: string): Promise<AutoSetupResult> {\n const result: AutoSetupResult = {\n name: 'Codex/AGENTS.md',\n detected: false,\n installed: false,\n alreadyInstalled: false,\n };\n\n // Detect Codex: check for existing AGENTS.md or CODEX_* env vars\n const agentsPath = getAgentsMdPath(cwd);\n const hasAgentsMd = await pathExists(agentsPath);\n const hasCodexEnv = Object.keys(process.env).some((k) => k.startsWith('CODEX_'));\n\n if (!hasAgentsMd && !hasCodexEnv) {\n return result;\n }\n\n result.detected = true;\n\n // Check if already has tbd section\n if (hasAgentsMd) {\n const content = await readFile(agentsPath, 'utf-8');\n if (content.includes('BEGIN TBD INTEGRATION')) {\n result.alreadyInstalled = true;\n // Note: We still run the handler to update the AGENTS.md content\n // even if tbd section exists. This ensures users get the latest\n // content when running `tbd setup --auto`.\n }\n }\n\n try {\n // Install/update Codex AGENTS.md (always runs to update content)\n const handler = new SetupCodexHandler(this.cmd);\n handler.setProjectDir(cwd);\n await handler.run({});\n result.installed = true;\n } catch (error) {\n result.error = (error as Error).message;\n }\n\n return result;\n }\n}\n\n// Main setup command\nexport const setupCommand = new Command('setup')\n .description('Configure tbd integration with editors and tools')\n .option('--auto', 'Non-interactive mode with smart defaults (for agents/scripts)')\n .option('--interactive', 'Interactive mode with prompts (for humans)')\n .option('--from-beads', 'Migrate from Beads to tbd')\n .option('--prefix <name>', 'Project prefix for issue IDs (required for fresh setup)')\n .option('--no-gh-cli', 'Disable automatic GitHub CLI installation hook')\n .action(async (options: SetupDefaultOptions, command) => {\n // If --auto or --interactive flag is set, run the default handler\n if (options.auto \|\| options.interactive) {\n const handler = new SetupDefaultHandler(command);\n await handler.run(options);\n return;\n }\n\n // If --from-beads is set without --auto/--interactive, treat as --auto\n if (options.fromBeads) {\n const handler = new SetupDefaultHandler(command);\n await handler.run({ ...options, auto: true });\n return;\n }\n\n // No flags provided - show help\n console.log('Usage: tbd setup [options]');\n console.log('');\n console.log('Initialize tbd and configure agent integrations.');\n console.log('Must be run inside a git repository. Installs .tbd/ and .claude/');\n console.log('at the git root (adjacent to .git/).');\n console.log('');\n console.log('Modes (one required):');\n console.log(\n ' --auto Non-interactive mode with smart defaults (for agents/scripts)',\n );\n console.log(' --interactive Interactive mode with prompts (for humans)');\n console.log(' --from-beads Migrate from Beads to tbd (implies --auto)');\n console.log('');\n console.log('Options:');\n console.log(' --prefix <name> Project prefix for issue IDs (e.g., \"tbd\", \"myapp\")');\n console.log(' --no-gh-cli Disable automatic GitHub CLI installation hook');\n console.log('');\n console.log('Examples:');\n console.log(' tbd setup --auto --prefix=tbd # Full automatic setup with prefix');\n console.log(' tbd setup --from-beads # Migrate from Beads (uses beads prefix)');\n console.log(' tbd setup --interactive # Interactive setup with prompts');\n console.log('');\n console.log('For surgical initialization without integrations, see: tbd init --help');\n });\n","/*\n `tbd save` - Save issues to a workspace or directory.\n \n Saves issues from the data-sync worktree to a named workspace or directory.\n * Used for sync failure recovery, backups, and bulk editing workflows.\n \n See: plan-2026-01-30-workspace-sync-alt.md\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, ValidationError } from '../lib/errors.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { saveToWorkspace, type SaveOptions } from '../../file/workspace.js';\n\ninterface SaveCommandOptions {\n workspace?: string;\n dir?: string;\n outbox?: boolean;\n updatesOnly?: boolean;\n}\n\nclass SaveHandler extends BaseCommand {\n async run(options: SaveCommandOptions): Promise<void> {\n const tbdRoot = await requireInit();\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Validate that at least one target is specified\n if (!options.workspace && !options.dir && !options.outbox) {\n throw new ValidationError('One of --workspace, --dir, or --outbox is required');\n }\n\n // Build save options\n const saveOptions: SaveOptions = {\n workspace: options.workspace,\n dir: options.dir,\n outbox: options.outbox,\n updatesOnly: options.updatesOnly,\n };\n\n if (this.checkDryRun('Would save issues to workspace', saveOptions)) {\n return;\n }\n\n const spinner = this.output.spinner('Saving issues...');\n\n const result = await this.execute(async () => {\n return await saveToWorkspace(tbdRoot, dataSyncDir, saveOptions);\n }, 'Failed to save issues');\n\n spinner.stop();\n\n if (!result) {\n return;\n }\n\n // Format output\n const targetName = options.outbox ? 'outbox' : (options.workspace ?? options.dir ?? 'unknown');\n\n this.output.data(\n {\n saved: result.saved,\n conflicts: result.conflicts,\n target: targetName,\n totalSource: result.totalSource,\n filtered: result.filtered,\n },\n () => {\n if (result.saved === 0) {\n if (result.filtered) {\n this.output.info(`No issues to save (0 of ${result.totalSource} issues have updates)`);\n } else {\n this.output.info('No issues to save');\n }\n } else {\n if (result.filtered) {\n this.output.success(\n `Saved ${result.saved} issue(s) to ${targetName} (${result.saved} of ${result.totalSource} filtered)`,\n );\n } else {\n this.output.success(`Saved ${result.saved} issue(s) to ${targetName}`);\n }\n if (result.conflicts > 0) {\n this.output.warn(`${result.conflicts} conflict(s) moved to attic`);\n }\n }\n },\n );\n\n // Remind user to commit if saving to workspace\n if (options.workspace \|\| options.outbox) {\n const colors = this.output.getColors();\n console.log(\n colors.dim(\n `\\nRemember to commit: git add .tbd/workspaces && git commit -m \"tbd: save workspace\"`,\n ),\n );\n }\n }\n}\n\nexport const saveCommand = new Command('save')\n .description('Save issues to a workspace or directory')\n .option('--workspace <name>', 'Save to named workspace under .tbd/workspaces/')\n .option('--dir <path>', 'Save to arbitrary directory')\n .option('--outbox', 'Shortcut for --workspace=outbox --updates-only')\n .option('--updates-only', 'Only save issues modified since last sync')\n .action(async (options, command) => {\n const handler = new SaveHandler(command);\n await handler.run(options);\n });\n","/\n `tbd workspace` - Workspace management commands.\n \n Workspaces are named directories for sync failure recovery, backups,\n * and bulk editing. Issues can be saved to a workspace and imported back.\n \n See: plan-2026-01-30-workspace-sync-alt.md\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, ValidationError } from '../lib/errors.js';\nimport {\n listWorkspacesWithCounts,\n deleteWorkspace,\n workspaceExists,\n} from '../../file/workspace.js';\nimport { isValidWorkspaceName } from '../../lib/paths.js';\n\n/\n List all workspaces with issue counts.\n /\nclass WorkspaceListHandler extends BaseCommand {\n async run(): Promise<void> {\n const tbdRoot = await requireInit();\n\n const workspaces = await listWorkspacesWithCounts(tbdRoot);\n\n this.output.data(workspaces, () => {\n const colors = this.output.getColors();\n if (workspaces.length === 0) {\n console.log('No workspaces');\n return;\n }\n\n // Calculate column widths\n const maxNameLen = Math.max(9, ...workspaces.map((ws) => ws.name.length)); // 9 = \"WORKSPACE\".length\n const countWidth = 6;\n\n // Header\n const header = `${colors.dim('WORKSPACE'.padEnd(maxNameLen))} ${colors.dim('open'.padStart(countWidth))} ${colors.dim('in_progress'.padStart(11))} ${colors.dim('closed'.padStart(countWidth))} ${colors.dim('total'.padStart(countWidth))}`;\n console.log(header);\n\n // Rows\n for (const ws of workspaces) {\n const { name, counts } = ws;\n const row = `${name.padEnd(maxNameLen)} ${String(counts.open).padStart(countWidth)} ${String(counts.in_progress).padStart(11)} ${String(counts.closed).padStart(countWidth)} ${String(counts.total).padStart(countWidth)}`;\n console.log(row);\n }\n });\n }\n}\n\n/\n Delete a workspace.\n /\nclass WorkspaceDeleteHandler extends BaseCommand {\n async run(name: string, options: { force?: boolean }): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Validate workspace name\n if (!isValidWorkspaceName(name)) {\n throw new ValidationError(\n `Invalid workspace name: \"${name}\". Use lowercase alphanumeric characters, hyphens, and underscores.`,\n );\n }\n\n // Check if workspace exists\n const exists = await workspaceExists(tbdRoot, name);\n if (!exists && !options.force) {\n throw new NotFoundError('Workspace', name);\n }\n\n if (this.checkDryRun('Would delete workspace', { name })) {\n return;\n }\n\n await this.execute(async () => {\n await deleteWorkspace(tbdRoot, name);\n }, 'Failed to delete workspace');\n\n this.output.success(`Deleted workspace \"${name}\"`);\n }\n}\n\nconst listWorkspaceCommand = new Command('list')\n .description('List all workspaces')\n .action(async (_options, command) => {\n const handler = new WorkspaceListHandler(command);\n await handler.run();\n });\n\nconst deleteWorkspaceCommand = new Command('delete')\n .description('Delete a workspace')\n .argument('<name>', 'Workspace name to delete')\n .option('--force', 'Delete without error if workspace does not exist')\n .action(async (name, options, command) => {\n const handler = new WorkspaceDeleteHandler(command);\n await handler.run(name, options);\n });\n\nexport const workspaceCommand = new Command('workspace')\n .description('Manage workspaces for sync recovery and backups')\n .addCommand(listWorkspaceCommand)\n .addCommand(deleteWorkspaceCommand);\n","/\n CLI program setup using Commander.js\n \n See: research-modern-typescript-cli-patterns.md\n /\n\nimport { Command } from 'commander';\n\nimport { VERSION } from './lib/version.js';\nimport {\n configureColoredHelp,\n createColoredHelpConfig,\n createHelpEpilog,\n getColorOptionFromArgv,\n} from './lib/output.js';\nimport { initCommand } from './commands/init.js';\nimport { createCommand } from './commands/create.js';\nimport { listCommand } from './commands/list.js';\nimport { showCommand } from './commands/show.js';\nimport { updateCommand } from './commands/update.js';\nimport { closeCommand } from './commands/close.js';\nimport { reopenCommand } from './commands/reopen.js';\nimport { readyCommand } from './commands/ready.js';\nimport { blockedCommand } from './commands/blocked.js';\nimport { staleCommand } from './commands/stale.js';\nimport { labelCommand } from './commands/label.js';\nimport { depCommand } from './commands/dep.js';\nimport { syncCommand } from './commands/sync.js';\nimport { searchCommand } from './commands/search.js';\nimport { statusCommand } from './commands/status.js';\nimport { statsCommand } from './commands/stats.js';\nimport { doctorCommand } from './commands/doctor.js';\nimport { configCommand } from './commands/config.js';\nimport { atticCommand } from './commands/attic.js';\nimport { importCommand } from './commands/import.js';\nimport { docsCommand } from './commands/docs.js';\nimport { closeProtocolCommand } from './commands/closing.js';\nimport { designCommand } from './commands/design.js';\nimport { readmeCommand } from './commands/readme.js';\nimport { uninstallCommand } from './commands/uninstall.js';\nimport { primeCommand } from './commands/prime.js';\nimport { skillCommand } from './commands/skill.js';\nimport { shortcutCommand } from './commands/shortcut.js';\nimport { guidelinesCommand } from './commands/guidelines.js';\nimport { templateCommand } from './commands/template.js';\nimport { setupCommand } from './commands/setup.js';\nimport { saveCommand } from './commands/save.js';\nimport { workspaceCommand } from './commands/workspace.js';\nimport { CLIError } from './lib/errors.js';\n\n/\n Create and configure the CLI program.\n /\nfunction createProgram(): Command {\n const program = new Command()\n .name('tbd')\n .description('Git-native issue tracking for AI agents and humans')\n .version(VERSION, '--version', 'Show version number')\n .helpOption('--help', 'Display help for command')\n .showHelpAfterError('(add --help for additional information)');\n\n // Configure colored help output (respects --color option)\n configureColoredHelp(program);\n\n // Global options\n program\n .option('--dry-run', 'Show what would be done without making changes')\n .option('--verbose', 'Enable verbose output')\n .option('--quiet', 'Suppress non-essential output')\n .option('--json', 'Output as JSON')\n .option('--color <when>', 'Colorize output: auto, always, never', 'auto')\n .option('--non-interactive', 'Disable all prompts, fail if input required')\n .option('--yes', 'Assume yes to confirmation prompts')\n .option('--no-sync', 'Skip automatic sync after write operations')\n .option('--debug', 'Show internal IDs alongside public IDs for debugging');\n\n // Add commands in logical groups\n // Note: commandsGroup() sets the heading for all following addCommand() calls\n\n program.commandsGroup('Documentation:');\n program.addCommand(readmeCommand);\n program.addCommand(primeCommand);\n program.addCommand(skillCommand);\n program.addCommand(shortcutCommand);\n program.addCommand(guidelinesCommand);\n program.addCommand(templateCommand);\n program.addCommand(closeProtocolCommand);\n program.addCommand(docsCommand);\n program.addCommand(designCommand);\n\n program.commandsGroup('Setup & Configuration:');\n program.addCommand(initCommand);\n program.addCommand(configCommand);\n program.addCommand(setupCommand);\n\n program.commandsGroup('Working With Issues:');\n\n program.addCommand(createCommand);\n program.addCommand(showCommand);\n program.addCommand(updateCommand);\n program.addCommand(closeCommand);\n program.addCommand(reopenCommand);\n program.addCommand(searchCommand);\n\n program.commandsGroup('Views and Filtering:');\n program.addCommand(readyCommand);\n program.addCommand(listCommand);\n program.addCommand(blockedCommand);\n program.addCommand(staleCommand);\n\n program.commandsGroup('Labels and Dependencies:');\n program.addCommand(depCommand);\n program.addCommand(labelCommand);\n\n program.commandsGroup('Sync and Status:');\n program.addCommand(syncCommand);\n program.addCommand(saveCommand);\n program.addCommand(statusCommand);\n program.addCommand(statsCommand);\n\n program.commandsGroup('Maintenance:');\n program.addCommand(doctorCommand);\n program.addCommand(atticCommand);\n program.addCommand(workspaceCommand);\n program.addCommand(importCommand);\n program.addCommand(uninstallCommand);\n\n // Apply colored help to all commands recursively\n // Note: addCommand() does NOT inherit parent's configureHelp settings,\n // unlike command() which does inherit. 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console.error('\\nInterrupted');\n process.exit(130); // 128 + 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Build-time injected __TBD_VERSION__ (production builds)\n * 2. TBD_DEV_VERSION env var (dev mode, set by pnpm tbd script)\n * 3. package.json version (fallback)\n \n No git dependency at runtime - git version is computed at build time\n * or by the dev script wrapper.\n /\n\nimport { createRequire } from 'node:module';\n\nimport { VERSION as BUILD_VERSION } from '../../index.js';\n\n/\n Get the CLI version.\n /\nfunction getVersion(): string {\n // 1. Build-time injected version (production)\n if (BUILD_VERSION !== 'development') {\n return BUILD_VERSION;\n }\n\n // 2. Dev mode env var (set by pnpm tbd script)\n if (process.env.TBD_DEV_VERSION) {\n return process.env.TBD_DEV_VERSION;\n }\n\n // 3. Fallback to package.json version\n const require = createRequire(import.meta.url);\n const pkg = require('../../../package.json') as { version: string };\n return pkg.version;\n}\n\n/\n CLI version - use this instead of importing VERSION directly from index.ts\n /\nexport const VERSION = getVersion();\n","/\n Command context and global options management.\n \n See: research-modern-typescript-cli-patterns.md#9-global-options\n /\n\nimport type { Command } from 'commander';\n\n/\n Output format options.\n /\nexport type OutputFormat = 'text' \| 'json';\n\n/\n Color output options.\n /\nexport type ColorOption = 'auto' \| 'always' \| 'never';\n\n/\n Global command context extracted from Commander options.\n /\nexport interface CommandContext {\n dryRun: boolean;\n verbose: boolean;\n quiet: boolean;\n json: boolean;\n color: ColorOption;\n nonInteractive: boolean;\n yes: boolean;\n sync: boolean;\n /* Debug mode: shows internal IDs alongside public IDs /\n debug: boolean;\n}\n\n/\n Extract command context from a Commander command.\n * Handles inheritance of global options through the command hierarchy.\n /\nexport function getCommandContext(command: Command): CommandContext {\n const opts = command.optsWithGlobals();\n const isCI = Boolean(process.env.CI);\n\n return {\n dryRun: opts.dryRun ?? false,\n verbose: opts.verbose ?? false,\n quiet: opts.quiet ?? false,\n json: opts.json ?? false,\n color: (opts.color as ColorOption) ?? 'auto',\n nonInteractive: opts.nonInteractive ?? (!process.stdin.isTTY \|\| isCI),\n yes: opts.yes ?? false,\n sync: opts.sync !== false, // --no-sync sets this to false\n debug: opts.debug ?? false,\n };\n}\n\n/\n Determine if output should be colorized based on options and environment.\n /\nexport function shouldColorize(colorOption: ColorOption): boolean {\n // NO_COLOR takes precedence (unless --color=always explicitly set)\n if (process.env.NO_COLOR && colorOption !== 'always') {\n return false;\n }\n if (colorOption === 'always') {\n return true;\n }\n if (colorOption === 'never') {\n return false;\n }\n return process.stdout.isTTY ?? false;\n}\n\n/\n Check if running in interactive mode.\n /\nexport function isInteractive(ctx: CommandContext): boolean {\n return !ctx.nonInteractive && process.stdin.isTTY === true && !process.env.CI;\n}\n","/\n OutputManager for dual-mode output (text + JSON).\n \n See: research-modern-typescript-cli-patterns.md#4-dual-output-mode-text--json\n /\n\nimport pc from 'picocolors';\nimport type { Command } from 'commander';\nimport { marked } from 'marked';\nimport { markedTerminal } from 'marked-terminal';\n\nimport type { CommandContext, ColorOption } from './context.js';\nimport { shouldColorize } from './context.js';\n\n/\n Standard icons for CLI output. Use these constants instead of hardcoded characters.\n \n Message icons (prefix messages with these):\n * - SUCCESS_ICON: ✓ for completed operations\n * - ERROR_ICON: ✗ for failures\n * - WARN_ICON: ⚠ for warnings\n * - NOTICE_ICON: • for notices/bullets\n \n Status icons (show issue status):\n * - OPEN_ICON: ○ for open issues\n * - IN_PROGRESS_ICON: ◐ for in-progress issues\n * - BLOCKED_ICON: ● for blocked issues\n * - CLOSED_ICON: ✓ for closed issues (same as SUCCESS_ICON)\n /\n\n/\n Format a section heading - ALL CAPS for consistent CLI output.\n * Per arch-cli-interface-design-system.md, section headings should be\n * ALL CAPS, bold, followed by blank line before content.\n \n @param text - The heading text to format\n * @returns Uppercase heading string\n /\nexport function formatHeading(text: string): string {\n return text.toUpperCase();\n}\n\nexport const ICONS = {\n // Message icons\n SUCCESS: '✓', // U+2713\n ERROR: '✗', // U+2717\n WARN: '⚠', // U+26A0\n NOTICE: '•', // U+2022\n\n // Status icons\n OPEN: '○', // U+25CB\n IN_PROGRESS: '◐', // U+25D0\n BLOCKED: '●', // U+25CF\n CLOSED: '✓', // U+2713 (same as SUCCESS)\n DEFERRED: '○', // U+25CB (same as OPEN)\n} as const;\n\n/\n Pre-parse argv to determine color setting before Commander parses options.\n * This is needed because help output happens before full option parsing.\n /\nexport function getColorOptionFromArgv(): ColorOption {\n const colorArg = process.argv.find((arg) => arg.startsWith('--color='));\n if (colorArg) {\n const value = colorArg.split('=')[1];\n if (value === 'always' \|\| value === 'never' \|\| value === 'auto') {\n return value;\n }\n }\n // Check for --color followed by value\n const colorIdx = process.argv.indexOf('--color');\n if (colorIdx !== -1 && process.argv[colorIdx + 1]) {\n const value = process.argv[colorIdx + 1];\n if (value === 'always' \|\| value === 'never' \|\| value === 'auto') {\n return value;\n }\n }\n return 'auto';\n}\n\n/\n Maximum width for help text and formatted output. We cap at 88 characters\n * for readability, but use narrower if the terminal is smaller.\n /\nexport const MAX_HELP_WIDTH = 88;\n\n/\n Get terminal width capped at MAX_HELP_WIDTH.\n * Use this for all formatted CLI output to ensure consistent width handling.\n /\nexport function getTerminalWidth(): number {\n return Math.min(MAX_HELP_WIDTH, process.stdout.columns ?? 80);\n}\n\n/\n Create colored help configuration for Commander.js.\n * Uses Commander's built-in configureHelp() style functions (requires v14+).\n \n @param colorOption - Color option to determine if colors should be enabled\n * @returns Help configuration object for program.configureHelp()\n /\nexport function createColoredHelpConfig(colorOption: ColorOption = 'auto') {\n const colors = pc.createColors(shouldColorize(colorOption));\n\n return {\n helpWidth: getTerminalWidth(),\n styleTitle: (str: string) => colors.bold(colors.cyan(str)),\n styleCommandText: (str: string) => colors.green(str),\n styleOptionText: (str: string) => colors.yellow(str),\n showGlobalOptions: true,\n };\n}\n\n/\n Create the help epilog text with color.\n * Includes \"Getting Started\" section per spec.\n \n @param colorOption - Color option to determine if colors should be enabled\n * @returns Colored epilog string\n /\nexport function createHelpEpilog(colorOption: ColorOption = 'auto'): string {\n const colors = pc.createColors(shouldColorize(colorOption));\n const lines = [\n colors.bold('Getting Started:'),\n ` ${colors.green('npm install -g get-tbd@latest && tbd setup --auto --prefix=<name>')}`,\n '',\n ' This initializes tbd and configures your coding agents automatically.',\n ` For interactive setup: ${colors.dim('tbd setup --interactive')}`,\n ` For manual control: ${colors.dim('tbd init --help')}`,\n '',\n colors.bold('Orientation:'),\n ` For workflow guidance, run: ${colors.green('tbd prime')}`,\n '',\n colors.blue('For more on tbd, see: https://github.com/jlevy/tbd'),\n ];\n return lines.join('\\n');\n}\n\n/\n Configure Commander.js with colored help text.\n * Call this on the program before adding commands.\n /\nexport function configureColoredHelp(program: Command): Command {\n const colorOption = getColorOptionFromArgv();\n return program.configureHelp(createColoredHelpConfig(colorOption));\n}\n\n/\n Color utilities with conditional colorization.\n \n Uses picocolors' createColors() for manual color support control,\n * which is the recommended approach per picocolors documentation.\n * This allows --color=always to work even when stdout is not a TTY.\n /\nexport function createColors(colorOption: ColorOption) {\n const enabled = shouldColorize(colorOption);\n\n // Use picocolors' createColors() for proper manual control\n // This overrides picocolors' automatic TTY detection\n const colors = pc.createColors(enabled);\n\n return {\n // Status colors\n success: colors.green,\n error: colors.red,\n warn: colors.yellow,\n info: colors.blue,\n\n // Text formatting\n bold: colors.bold,\n dim: colors.dim,\n italic: colors.italic,\n underline: colors.underline,\n\n // Semantic colors\n id: colors.cyan,\n label: colors.magenta,\n path: colors.blue,\n };\n}\n\n/\n Render Markdown to colorized terminal output.\n \n Uses marked-terminal for colorized output when colors are enabled,\n * falls back to plain Markdown when colors are disabled or piped.\n * Respects the --color option and TTY detection.\n \n @param content - Markdown string to render\n * @param colorOption - Color option to determine if colors should be enabled\n * @returns Rendered string (colorized or plain)\n /\nexport function renderMarkdown(content: string, colorOption: ColorOption = 'auto'): string {\n const useColors = shouldColorize(colorOption);\n\n if (!useColors) {\n // Return plain markdown when colors are disabled\n return content;\n }\n\n // Configure marked with terminal renderer for this parse\n // Note: @types/marked-terminal is outdated; markedTerminal returns MarkedExtension in v7+\n // but types still claim it returns TerminalRenderer. Cast to work around this.\n marked.use(\n markedTerminal({\n width: getTerminalWidth(),\n reflowText: true,\n }) as unknown as Parameters<typeof marked.use>[0],\n );\n\n // marked.parse returns string with sync renderer\n return marked.parse(content) as string;\n}\n\n/\n Spinner interface for progress indication.\n /\nexport interface Spinner {\n message(msg: string): void;\n stop(msg?: string): void;\n}\n\n/\n No-op spinner for non-TTY or quiet mode.\n /\nconst noopSpinner: Spinner = {\n message: () => {},\n stop: () => {},\n};\n\n/\n OutputManager handles all CLI output with format switching.\n /\nexport class OutputManager {\n private ctx: CommandContext;\n private colors: ReturnType<typeof createColors>;\n\n constructor(ctx: CommandContext) {\n this.ctx = ctx;\n this.colors = createColors(ctx.color);\n }\n\n /\n Output structured data - always goes to stdout.\n * In JSON mode, outputs JSON. In text mode, calls the formatter.\n /\n data<T>(data: T, textFormatter?: (data: T) => void): void {\n if (this.ctx.json) {\n console.log(JSON.stringify(data, null, 2));\n } else if (textFormatter) {\n textFormatter(data);\n }\n }\n\n /\n Output success message - text mode only, stdout.\n * Suppressed by --quiet and --json.\n /\n success(message: string): void {\n if (!this.ctx.json && !this.ctx.quiet) {\n console.log(this.colors.success(`${ICONS.SUCCESS} ${message}`));\n }\n }\n\n /\n Output notice message - noteworthy events during normal operation.\n * Blue bullet, shown at default level. Suppressed by --quiet and --json.\n /\n notice(message: string): void {\n if (!this.ctx.json && !this.ctx.quiet) {\n console.log(this.colors.info(`${ICONS.NOTICE} ${message}`));\n }\n }\n\n /\n Output info message - operational progress.\n * Requires --verbose or --debug. Suppressed by --json.\n /\n info(message: string): void {\n if (!this.ctx.json && (this.ctx.verbose \|\| this.ctx.debug)) {\n console.error(this.colors.dim(message));\n }\n }\n\n /\n Output warning - issues that didn't stop operation.\n * Yellow warning icon, stderr. Suppressed by --quiet.\n /\n warn(message: string): void {\n if (this.ctx.json) {\n console.error(JSON.stringify({ warning: message }));\n } else if (!this.ctx.quiet) {\n console.error(this.colors.warn(`${ICONS.WARN} ${message}`));\n }\n }\n\n /\n Output error - failures that stop operation.\n * Red X icon, always shown (even in --quiet), stderr.\n /\n error(message: string, err?: Error): void {\n if (this.ctx.json) {\n console.error(JSON.stringify({ error: message, details: err?.message }));\n } else {\n console.error(this.colors.error(`${ICONS.ERROR} ${message}`));\n if (this.ctx.verbose && err?.stack) {\n console.error(this.colors.dim(err.stack));\n }\n }\n }\n\n /\n Output command being executed - shows external commands.\n * Requires --verbose or --debug. Suppressed by --json.\n /\n command(cmd: string, args?: string[]): void {\n if (!this.ctx.json && (this.ctx.verbose \|\| this.ctx.debug)) {\n const fullCmd = args ? `${cmd} ${args.join(' ')}` : cmd;\n console.error(this.colors.dim(`> ${fullCmd}`));\n }\n }\n\n /\n Output debug message - internal state for troubleshooting.\n * Requires --debug only (not --verbose). Suppressed by --json.\n /\n debug(message: string): void {\n if (this.ctx.debug && !this.ctx.json) {\n console.error(this.colors.dim(`[debug] ${message}`));\n }\n }\n\n /\n Output dry-run indication.\n /\n dryRun(message: string, details?: object): void {\n if (this.ctx.json) {\n console.log(JSON.stringify({ dryRun: true, action: message, ...details }));\n } else {\n console.log(this.colors.warn(`[DRY-RUN] ${message}`));\n if (details && (this.ctx.verbose \|\| this.ctx.debug)) {\n console.log(this.colors.dim(JSON.stringify(details, null, 2)));\n }\n }\n }\n\n /\n Output a table with headers and rows.\n * Headers are dimmed. Rows are formatted with consistent column widths.\n * Suppressed in JSON mode.\n \n @param headers - Array of column headers with widths\n * @param rows - Array of row data arrays (each row = array of strings)\n /\n table(\n headers: { label: string; width: number }[],\n rows: (string \| { value: string; color?: (s: string) => string })[][],\n ): void {\n if (this.ctx.json) return;\n\n // Output header row\n const headerLine = headers.map((h) => h.label.padEnd(h.width)).join('');\n console.log(this.colors.dim(headerLine));\n\n // Output data rows\n for (const row of rows) {\n const cells = row.map((cell, i) => {\n const width = headers[i]?.width ?? 0;\n if (typeof cell === 'string') {\n return cell.padEnd(width);\n }\n // Cell with custom color\n const paddedValue = cell.value.padEnd(width);\n return cell.color ? cell.color(paddedValue) : paddedValue;\n });\n console.log(cells.join(''));\n }\n }\n\n /\n Output a bulleted list.\n * Uses NOTICE icon (•) as bullet. Suppressed in JSON mode.\n \n @param items - Array of items to list\n * @param options - Optional indent level (default 0)\n /\n list(items: string[], options?: { indent?: number }): void {\n if (this.ctx.json) return;\n\n const indent = ' '.repeat(options?.indent ?? 0);\n for (const item of items) {\n console.log(`${indent}${ICONS.NOTICE} ${item}`);\n }\n }\n\n /\n Output a count summary in standard format.\n * Format: \"N item(s)\" with dim color. Suppressed in JSON mode.\n \n @param count - The count to display\n * @param singular - Singular form of the item (e.g., \"issue\")\n * @param plural - Optional plural form (defaults to singular + \"s\")\n /\n count(count: number, singular: string, plural?: string): void {\n if (this.ctx.json) return;\n\n const pluralForm = plural ?? `${singular}s`;\n const label = count === 1 ? singular : pluralForm;\n console.log(this.colors.dim(`${count} ${label}`));\n }\n\n /\n Create a spinner for progress indication.\n * Returns no-op in JSON/quiet mode or non-TTY.\n /\n spinner(message: string): Spinner {\n // Never show spinners in JSON mode, quiet mode, or non-TTY\n if (this.ctx.json \|\| this.ctx.quiet \|\| !process.stderr.isTTY) {\n return noopSpinner;\n }\n\n // Simple inline spinner (no external dependency for now)\n let frame = 0;\n const frames = ['⠋', '⠙', '⠹', '⠸', '⠼', '⠴', '⠦', '⠧', '⠇', '⠏'];\n let currentMessage = message;\n\n const spinnerColor = this.colors.info;\n const write = () => {\n process.stderr.write(`\\r${spinnerColor(frames[frame] ?? '⠋')} ${currentMessage}`);\n frame = (frame + 1) % frames.length;\n };\n\n write();\n const interval = setInterval(write, 80);\n\n return {\n message: (msg: string) => {\n currentMessage = msg;\n },\n stop: (msg?: string) => {\n clearInterval(interval);\n process.stderr.write('\\r' + ' '.repeat(currentMessage.length + 3) + '\\r');\n if (msg) {\n console.error(msg);\n }\n },\n };\n }\n\n /\n Get colors instance for direct use.\n /\n getColors() {\n return this.colors;\n }\n\n /\n Check if quiet mode is enabled.\n /\n isQuiet(): boolean {\n return this.ctx.quiet;\n }\n}\n\n// ============================================================================\n// Component Helper Functions\n// ============================================================================\n\n/\n Format command header with version.\n * Used at start of orientation commands (status, doctor, stats).\n \n @example formatCommandHeader('tbd', '0.1.9', colors) → \"tbd v0.1.9\" (bold name)\n /\nexport function formatCommandHeader(\n name: string,\n version: string,\n colors: ReturnType<typeof createColors>,\n): string {\n return `${colors.bold(name)} v${version}`;\n}\n\n/\n Format key-value line with dim key.\n * Used for configuration display.\n \n @example formatKeyValue('Sync branch', 'tbd-sync', colors) → \"Sync branch: tbd-sync\"\n /\nexport function formatKeyValue(\n key: string,\n value: string,\n colors: ReturnType<typeof createColors>,\n): string {\n return `${colors.dim(key + ':')} ${value}`;\n}\n\n/\n Format aligned statistic block.\n * Returns array of formatted lines with aligned values.\n \n @param stats - Array of {label, value} pairs\n * @param colors - Color functions (unused but kept for consistency)\n * @returns Array of formatted lines\n \n @example\n * formatStatBlock([{label: 'Ready', value: 12}, {label: 'In progress', value: 4}], colors)\n * → [' Ready: 12', ' In progress: 4']\n /\nexport function formatStatBlock(\n stats: { label: string; value: number \| string }[],\n _colors: ReturnType<typeof createColors>,\n): string[] {\n const maxLabelLen = Math.max(...stats.map((s) => s.label.length));\n\n return stats.map((stat) => {\n const padding = ' '.repeat(maxLabelLen - stat.label.length + 1);\n return ` ${stat.label}:${padding}${stat.value}`;\n });\n}\n\n/\n Format multi-line warning block.\n * Returns array of lines for a warning with headline, details, and suggestion.\n \n @param headline - Warning headline (shown with ⚠ icon)\n * @param details - Detail lines\n * @param suggestion - Optional suggestion with command (bolded)\n * @param colors - Color functions\n * @returns Array of formatted lines\n /\nexport function formatWarningBlock(\n headline: string,\n details: string[],\n suggestion: { text: string; command: string } \| undefined,\n colors: ReturnType<typeof createColors>,\n): string[] {\n const lines: string[] = [];\n\n // Headline with warning icon\n lines.push(`${colors.warn(ICONS.WARN)} ${headline}`);\n\n // Detail lines\n for (const detail of details) {\n lines.push(detail);\n }\n\n // Suggestion with bolded command\n if (suggestion) {\n lines.push(`${suggestion.text} ${colors.bold(suggestion.command)}`);\n }\n\n return lines;\n}\n\n/\n Format footer with command suggestions.\n * Returns a formatted string like \"Use 'tbd stats' for statistics, 'tbd doctor' for health checks.\"\n \n @param suggestions - Array of {command, description} pairs\n * @param colors - Color functions\n * @returns Formatted footer string\n /\nexport function formatFooter(\n suggestions: { command: string; description: string }[],\n colors: ReturnType<typeof createColors>,\n): string {\n if (suggestions.length === 0) {\n return '';\n }\n\n const parts = suggestions.map((s) => `${colors.bold(`'${s.command}'`)} for ${s.description}`);\n\n if (parts.length === 1) {\n return `Use ${parts[0]}.`;\n }\n\n return `Use ${parts.join(', ')}.`;\n}\n","/\n Centralized path constants for tbd.\n \n Directory structure (per spec):\n \n On main/dev branches:\n * .tbd/\n * config.yml - Project configuration (tracked)\n * state.yml - Local state (gitignored)\n * .gitignore - Ignores docs/, data-sync-worktree/, data-sync/\n * docs/ - Installed documentation (gitignored, regenerated on setup)\n * data-sync-worktree/ - Hidden worktree checkout of tbd-sync branch\n * .tbd/\n * data-sync/\n * issues/\n * mappings/\n * attic/\n * meta.yml\n \n On tbd-sync branch:\n * .tbd/\n * data-sync/\n * issues/\n * mappings/\n * attic/\n * meta.yml\n /\n\nimport { join } from 'node:path';\n\n/* The tbd configuration directory on main branch /\nexport const TBD_DIR = '.tbd';\n\n/* The config file path /\nexport const CONFIG_FILE = join(TBD_DIR, 'config.yml');\n\n/* The local state file (gitignored) /\nexport const STATE_FILE = join(TBD_DIR, 'state.yml');\n\n/* The worktree directory name /\nexport const WORKTREE_DIR_NAME = 'data-sync-worktree';\n\n/* The worktree path (gitignored) /\nexport const WORKTREE_DIR = join(TBD_DIR, WORKTREE_DIR_NAME);\n\n/* The data directory name on the sync branch /\nexport const DATA_SYNC_DIR_NAME = 'data-sync';\n\n/\n The base directory for synced data.\n \n NOTE: This is currently pointing directly to .tbd/data-sync/ which is WRONG\n * per the spec. The correct path should be via the worktree:\n * .tbd/data-sync-worktree/.tbd/data-sync/\n \n TODO(tbd-208): Update this to use the worktree path once worktree\n * management is implemented.\n /\nexport const DATA_SYNC_DIR = join(TBD_DIR, DATA_SYNC_DIR_NAME);\n\n/\n The correct path for synced data via worktree (per spec).\n * Use this once worktree management is implemented.\n /\nexport const DATA_SYNC_DIR_VIA_WORKTREE = join(WORKTREE_DIR, TBD_DIR, DATA_SYNC_DIR_NAME);\n\n/* Issues directory /\nexport const ISSUES_DIR = join(DATA_SYNC_DIR, 'issues');\n\n/* Mappings directory /\nexport const MAPPINGS_DIR = join(DATA_SYNC_DIR, 'mappings');\n\n/* Attic directory for conflict resolution /\nexport const ATTIC_DIR = join(DATA_SYNC_DIR, 'attic');\n\n/* Meta file for schema version /\nexport const META_FILE = join(DATA_SYNC_DIR, 'meta.yml');\n\n/* The sync branch name /\nexport const SYNC_BRANCH = 'tbd-sync';\n\n// =============================================================================\n// Workspace Paths (for sync failure recovery, backups, bulk editing)\n// =============================================================================\n\n/* The workspaces directory name within .tbd/ /\nexport const WORKSPACES_DIR_NAME = 'workspaces';\n\n/* Full path to workspaces directory: .tbd/workspaces/ /\nexport const WORKSPACES_DIR = join(TBD_DIR, WORKSPACES_DIR_NAME);\n\n/\n Get the path to a named workspace directory.\n \n Workspaces are stored at: .tbd/workspaces/{name}/\n \n @param workspaceName - The name of the workspace (e.g., 'outbox', 'my-feature')\n * @returns Path to the workspace directory\n /\nexport function getWorkspaceDir(workspaceName: string): string {\n return join(WORKSPACES_DIR, workspaceName);\n}\n\n/\n Get the path to a workspace's issues directory.\n \n @param workspaceName - The name of the workspace\n * @returns Path to the workspace's issues directory\n /\nexport function getWorkspaceIssuesDir(workspaceName: string): string {\n return join(getWorkspaceDir(workspaceName), 'issues');\n}\n\n/\n Get the path to a workspace's mappings directory.\n \n @param workspaceName - The name of the workspace\n * @returns Path to the workspace's mappings directory\n /\nexport function getWorkspaceMappingsDir(workspaceName: string): string {\n return join(getWorkspaceDir(workspaceName), 'mappings');\n}\n\n/\n Get the path to a workspace's attic directory.\n \n The attic stores conflict backups during workspace save operations.\n \n @param workspaceName - The name of the workspace\n * @returns Path to the workspace's attic directory\n /\nexport function getWorkspaceAtticDir(workspaceName: string): string {\n return join(getWorkspaceDir(workspaceName), 'attic');\n}\n\n/\n Validate a workspace name.\n \n Valid workspace names:\n * - Lowercase alphanumeric characters\n * - Hyphens and underscores allowed\n * - Must not be empty\n * - Must not contain path separators or dots at start\n \n @param name - The workspace name to validate\n * @returns true if the name is valid\n /\nexport function isValidWorkspaceName(name: string): boolean {\n if (!name \|\| name.length === 0) {\n return false;\n }\n\n // Must not start with dot (hidden files)\n if (name.startsWith('.')) {\n return false;\n }\n\n // Only allow lowercase alphanumeric, hyphens, and underscores\n // No spaces, path separators, or special characters\n const validPattern = /^[a-z0-9][a-z0-9_-]$/;\n return validPattern.test(name);\n}\n\n// =============================================================================\n// Documentation/Shortcuts Paths\n// =============================================================================\n\n/** Docs directory name within .tbd/ /\nexport const DOCS_DIR = 'docs';\n\n/* Shortcuts directory name within docs/ /\nexport const SHORTCUTS_DIR = 'shortcuts';\n\n/* System shortcuts directory name (core docs like skill.md) /\nexport const SYSTEM_DIR = 'system';\n\n/* Standard shortcuts directory name (workflow shortcuts) /\nexport const STANDARD_DIR = 'standard';\n\n/* Guidelines directory name (coding rules and best practices) /\nexport const GUIDELINES_DIR = 'guidelines';\n\n/* Templates directory name (document templates) /\nexport const TEMPLATES_DIR = 'templates';\n\n/* Full path to docs directory: .tbd/docs/ /\nexport const TBD_DOCS_DIR = join(TBD_DIR, DOCS_DIR);\n\n/* Full path to shortcuts directory: .tbd/docs/shortcuts/ /\nexport const TBD_SHORTCUTS_DIR = join(TBD_DOCS_DIR, SHORTCUTS_DIR);\n\n/* Full path to system shortcuts: .tbd/docs/shortcuts/system/ /\nexport const TBD_SHORTCUTS_SYSTEM = join(TBD_SHORTCUTS_DIR, SYSTEM_DIR);\n\n/* Full path to standard shortcuts: .tbd/docs/shortcuts/standard/ /\nexport const TBD_SHORTCUTS_STANDARD = join(TBD_SHORTCUTS_DIR, STANDARD_DIR);\n\n/* Full path to guidelines: .tbd/docs/guidelines/ (top-level, not under shortcuts) /\nexport const TBD_GUIDELINES_DIR = join(TBD_DOCS_DIR, GUIDELINES_DIR);\n\n/* Full path to templates: .tbd/docs/templates/ (top-level, not under shortcuts) /\nexport const TBD_TEMPLATES_DIR = join(TBD_DOCS_DIR, TEMPLATES_DIR);\n\n/* @deprecated Use TBD_GUIDELINES_DIR instead /\nexport const TBD_SHORTCUTS_GUIDELINES = TBD_GUIDELINES_DIR;\n\n/* @deprecated Use TBD_TEMPLATES_DIR instead /\nexport const TBD_SHORTCUTS_TEMPLATES = TBD_TEMPLATES_DIR;\n\n/* Built-in docs source paths (relative to package docs/) /\nexport const BUILTIN_SHORTCUTS_SYSTEM = join(SHORTCUTS_DIR, SYSTEM_DIR);\nexport const BUILTIN_SHORTCUTS_STANDARD = join(SHORTCUTS_DIR, STANDARD_DIR);\n\n/* Built-in guidelines source path (relative to package docs/) /\nexport const BUILTIN_GUIDELINES_DIR = GUIDELINES_DIR;\n\n/* Built-in templates source path (relative to package docs/) /\nexport const BUILTIN_TEMPLATES_DIR = TEMPLATES_DIR;\n\n/* Install directory name (header files for tool-specific installation) /\nexport const INSTALL_DIR = 'install';\n\n/* Built-in install source path (relative to package docs/) /\nexport const BUILTIN_INSTALL_DIR = INSTALL_DIR;\n\n/\n Default shortcut lookup paths (searched in order, relative to tbd root).\n * Earlier paths take precedence over later paths.\n * Note: Guidelines and templates are now separate top-level directories.\n /\nexport const DEFAULT_SHORTCUT_PATHS = [\n TBD_SHORTCUTS_SYSTEM, // .tbd/docs/shortcuts/system/\n TBD_SHORTCUTS_STANDARD, // .tbd/docs/shortcuts/standard/\n];\n\n/\n Default guidelines lookup paths (relative to tbd root).\n /\nexport const DEFAULT_GUIDELINES_PATHS = [\n TBD_GUIDELINES_DIR, // .tbd/docs/guidelines/\n];\n\n/\n Default template lookup paths (relative to tbd root).\n /\nexport const DEFAULT_TEMPLATE_PATHS = [\n TBD_TEMPLATES_DIR, // .tbd/docs/templates/\n];\n\n/\n Get the full path to an issue file.\n /\nexport function getIssuePath(issueId: string): string {\n return join(ISSUES_DIR, `${issueId}.md`);\n}\n\n/\n Get the full path to a mapping file.\n /\nexport function getMappingPath(name: string): string {\n return join(MAPPINGS_DIR, `${name}.yml`);\n}\n\n/\n Get the full path to an attic entry.\n /\nexport function getAtticPath(issueId: string, filename: string): string {\n return join(ATTIC_DIR, 'conflicts', issueId, filename);\n}\n\n// =============================================================================\n// Dynamic Path Resolution\n// =============================================================================\n\nimport { access } from 'node:fs/promises';\n\n/\n Options for resolveDataSyncDir.\n /\nexport interface ResolveDataSyncDirOptions {\n /\n Allow fallback to direct path when worktree is missing.\n * Set to true for test environments or diagnostic tools.\n * Default: true. When false and worktree is missing, throws WorktreeMissingError.\n /\n allowFallback?: boolean;\n}\n\n/\n Error thrown when worktree is missing and fallback is not allowed.\n * Defined inline to avoid circular dependency with errors.ts.\n /\nexport class WorktreeMissingError extends Error {\n constructor(\n message = \"Worktree not found at .tbd/data-sync-worktree/. Run 'tbd doctor --fix' to repair.\",\n ) {\n super(message);\n this.name = 'WorktreeMissingError';\n }\n}\n\n/\n Cache for resolved data sync directory.\n * Reset when baseDir changes.\n /\nlet _resolvedDataSyncDir: string \| null = null;\nlet _resolvedBaseDir: string \| null = null;\nlet _resolvedAllowFallback: boolean \| null = null;\n\n/\n Resolve the actual data sync directory path.\n \n This function detects whether we're running with a git worktree\n * (production) or in a test environment without worktree.\n \n Order of preference:\n * 1. Worktree path if worktree exists: .tbd/data-sync-worktree/.tbd/data-sync/\n * 2. Direct path as fallback (only if allowFallback: true)\n \n @param baseDir - The base directory of the repository (default: process.cwd())\n * @param options - Options for path resolution\n * @returns Resolved data sync directory path\n * @throws WorktreeMissingError if worktree missing and allowFallback is false\n \n See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n /\nexport async function resolveDataSyncDir(\n baseDir: string = process.cwd(),\n options?: ResolveDataSyncDirOptions,\n): Promise<string> {\n const allowFallback = options?.allowFallback ?? true;\n\n // Return cached result if baseDir and options haven't changed\n if (\n _resolvedDataSyncDir &&\n _resolvedBaseDir === baseDir &&\n _resolvedAllowFallback === allowFallback\n ) {\n return _resolvedDataSyncDir;\n }\n\n const worktreePath = join(baseDir, DATA_SYNC_DIR_VIA_WORKTREE);\n const directPath = join(baseDir, DATA_SYNC_DIR);\n\n // Check if worktree path exists\n try {\n await access(worktreePath);\n _resolvedDataSyncDir = worktreePath;\n _resolvedBaseDir = baseDir;\n _resolvedAllowFallback = allowFallback;\n return worktreePath;\n } catch {\n // Worktree doesn't exist\n if (!allowFallback) {\n throw new WorktreeMissingError();\n }\n\n // Fallback to direct path (test mode or diagnostic tools)\n // Note: In production, sync.ts checks worktree health before calling this\n // Debug warning to help detect unintended fallback usage\n if (process.env.DEBUG \|\| process.env.TBD_DEBUG) {\n console.warn(\n '[tbd:paths] resolveDataSyncDir: worktree not found, falling back to direct path',\n );\n }\n _resolvedDataSyncDir = directPath;\n _resolvedBaseDir = baseDir;\n _resolvedAllowFallback = allowFallback;\n return directPath;\n }\n}\n\n/\n Resolve issues directory path.\n /\nexport async function resolveIssuesDir(\n baseDir: string = process.cwd(),\n options?: ResolveDataSyncDirOptions,\n): Promise<string> {\n const dataSyncDir = await resolveDataSyncDir(baseDir, options);\n return join(dataSyncDir, 'issues');\n}\n\n/\n Resolve mappings directory path.\n /\nexport async function resolveMappingsDir(\n baseDir: string = process.cwd(),\n options?: ResolveDataSyncDirOptions,\n): Promise<string> {\n const dataSyncDir = await resolveDataSyncDir(baseDir, options);\n return join(dataSyncDir, 'mappings');\n}\n\n/\n Resolve attic directory path.\n /\nexport async function resolveAtticDir(\n baseDir: string = process.cwd(),\n options?: ResolveDataSyncDirOptions,\n): Promise<string> {\n const dataSyncDir = await resolveDataSyncDir(baseDir, options);\n return join(dataSyncDir, 'attic');\n}\n\n/\n Clear the resolved path cache.\n * Call this when the repository state changes (e.g., after init).\n /\nexport function clearPathCache(): void {\n _resolvedDataSyncDir = null;\n _resolvedBaseDir = null;\n _resolvedAllowFallback = null;\n}\n\n// =============================================================================\n// Doc Path Resolution\n// =============================================================================\n\nimport { isAbsolute } from 'node:path';\nimport { homedir } from 'node:os';\n\n/\n Resolve a doc path for consistent handling across the codebase.\n \n Path resolution rules:\n * - Absolute paths (starting with /): used as-is\n * - Home directory paths (starting with ~/): expanded to user home directory\n * - Relative paths: resolved from tbd root (baseDir)\n \n @param docPath - The path to resolve\n * @param baseDir - The tbd root directory (parent of .tbd/), defaults to cwd\n * @returns Resolved absolute path\n \n @example\n * // Absolute path - returned as-is\n * resolveDocPath('/usr/local/docs/file.md') // => '/usr/local/docs/file.md'\n \n // Home path - expanded\n * resolveDocPath('~/docs/file.md') // => '/Users/username/docs/file.md'\n \n // Relative path - resolved from baseDir\n * resolveDocPath('docs/file.md', '/project') // => '/project/docs/file.md'\n /\nexport function resolveDocPath(docPath: string, baseDir: string = process.cwd()): string {\n // Handle home directory expansion\n if (docPath.startsWith('~/')) {\n return join(homedir(), docPath.slice(2));\n }\n\n // Absolute paths used as-is\n if (isAbsolute(docPath)) {\n return docPath;\n }\n\n // Relative paths resolved from baseDir (tbd root)\n return join(baseDir, docPath);\n}\n\n// =============================================================================\n// Token Estimation Settings\n// =============================================================================\n\n/\n Characters per token ratio for estimating token counts.\n \n Based on research of OpenAI (tiktoken) and Claude tokenizers:\n * - Pure English prose: ~4-5 chars/token\n * - Code and symbols: ~3 chars/token\n * - Mixed markdown/code docs: ~3.5 chars/token\n \n We use 3.5 as our docs are markdown with code examples.\n * This provides ~15-20% accuracy, sufficient for cost estimation.\n /\nexport const CHARS_PER_TOKEN = 3.5;\n","/\n tbd Directory Format Versioning\n * ================================\n \n This file is the SINGLE SOURCE OF TRUTH for .tbd/ directory format versions.\n \n WHEN TO BUMP THE FORMAT VERSION:\n * - Bump when changes REQUIRE migration (deleting files, changing formats, moving files)\n * - Bump when changing config schema (adding, removing, or modifying fields)\n * - Do NOT bump for additive changes that don't affect config.yml (new directories, etc.)\n \n HOW TO ADD A NEW FORMAT VERSION:\n * 1. Add entry to FORMAT_HISTORY with detailed description\n * 2. Implement migrate_fXX_to_fYY() function\n * 3. Add case to migrateToLatest()\n * 4. Update CURRENT_FORMAT\n * 5. Add tests for the migration path\n \n FORWARD COMPATIBILITY POLICY:\n * ConfigSchema uses Zod's strip() mode, which discards unknown fields. To prevent\n * data loss when users mix tbd versions:\n \n 1. When changing config schema, bump the format version (e.g., f03 → f04)\n * 2. config.ts checks format compatibility via isCompatibleFormat()\n * 3. Older tbd versions will error with \"format 'fXX' is from a newer tbd version\"\n * 4. The error tells users to upgrade: npm install -g get-tbd@latest\n \n This ensures older versions fail fast rather than silently corrupting config.\n * See ConfigSchema in schemas.ts and checkFormatCompatibility() in config.ts.\n /\n\n// =============================================================================\n// Format Constants\n// =============================================================================\n\n/\n Current format version.\n * Bump this ONLY for breaking changes that require migration.\n /\nexport const CURRENT_FORMAT = 'f03';\n\n/\n Initial format version for configs that don't have tbd_format field.\n /\nexport const INITIAL_FORMAT = 'f01';\n\n// =============================================================================\n// Format History\n// =============================================================================\n\n/\n Complete history of format versions with their changes.\n * This serves as documentation and enables version detection.\n /\nexport const FORMAT_HISTORY = {\n f01: {\n introduced: '0.1.0',\n description: 'Initial format',\n structure: {\n 'config.yml': 'Project configuration',\n 'state.yml': 'Local state (gitignored)',\n 'docs/': 'Documentation cache (gitignored)',\n 'issues/': 'Issue YAML files',\n },\n },\n f02: {\n introduced: '0.1.5',\n description: 'Adds configurable doc_cache',\n changes: [\n 'Added doc_cache: key to config.yml for configurable doc sources',\n 'Added settings.doc_auto_sync_hours for automatic doc refresh',\n 'Added last_doc_sync_at to state.yml for tracking sync time',\n ],\n migration: 'Populates default doc_cache config from bundled docs',\n },\n f03: {\n introduced: '0.1.6',\n description: 'Consolidates docs_cache config structure',\n changes: [\n 'Consolidated doc_cache: and docs: into single docs_cache: key',\n 'Moved doc_cache: -> docs_cache.files:',\n 'Moved docs.paths: -> docs_cache.lookup_path:',\n 'Removed separate docs: key',\n ],\n migration: 'Migrates old config keys to new docs_cache structure',\n },\n} as const;\n\nexport type FormatVersion = keyof typeof FORMAT_HISTORY;\n\n// =============================================================================\n// Migration Types\n// =============================================================================\n\n/\n Raw config data before parsing/validation.\n * Used during migration when we need to work with potentially old formats.\n /\nexport interface RawConfig {\n tbd_format?: string;\n tbd_version?: string;\n sync?: {\n branch?: string;\n remote?: string;\n };\n display?: {\n id_prefix?: string;\n };\n settings?: {\n auto_sync?: boolean;\n doc_auto_sync_hours?: number;\n };\n // Old format (f02 and earlier)\n docs?: {\n paths?: string[];\n };\n doc_cache?: Record<string, string>;\n // New format (f03+)\n docs_cache?: {\n files?: Record<string, string>;\n lookup_path?: string[];\n };\n}\n\n/\n Result of a migration operation.\n /\nexport interface MigrationResult {\n /* The migrated config /\n config: RawConfig;\n /* Format version before migration /\n fromFormat: FormatVersion;\n /* Format version after migration /\n toFormat: FormatVersion;\n /* Whether any changes were made /\n changed: boolean;\n /* Description of changes made /\n changes: string[];\n}\n\n// =============================================================================\n// Migration Functions\n// =============================================================================\n\n/\n Migrate from f01 to f02.\n * - Adds tbd_format field\n * - Adds doc_auto_sync_hours setting (default: 24)\n * - doc_cache will be populated separately during setup (requires file system access)\n /\nfunction migrate_f01_to_f02(config: RawConfig): MigrationResult {\n const changes: string[] = [];\n const migrated = { ...config };\n\n // Add format version\n migrated.tbd_format = 'f02';\n changes.push('Added tbd_format: f02');\n\n // Ensure settings exists and add doc_auto_sync_hours\n migrated.settings ??= {};\n if (migrated.settings.doc_auto_sync_hours === undefined) {\n migrated.settings.doc_auto_sync_hours = 24;\n changes.push('Added settings.doc_auto_sync_hours: 24');\n }\n\n // Note: doc_cache is intentionally NOT added here.\n // It will be populated during setup when we have access to the file system\n // and can enumerate the bundled docs.\n\n return {\n config: migrated,\n fromFormat: 'f01',\n toFormat: 'f02',\n changed: changes.length > 0,\n changes,\n };\n}\n\n/\n Migrate from f02 to f03.\n * - Consolidates doc_cache: and docs: into docs_cache:\n * - Moves doc_cache: -> docs_cache.files:\n * - Moves docs.paths: -> docs_cache.lookup_path:\n * - Removes separate docs: and doc_cache: keys\n /\nfunction migrate_f02_to_f03(config: RawConfig): MigrationResult {\n const changes: string[] = [];\n const migrated = { ...config };\n\n // Update format version\n migrated.tbd_format = 'f03';\n changes.push('Updated tbd_format: f03');\n\n // Initialize docs_cache if it doesn't exist\n migrated.docs_cache ??= {};\n\n // Migrate doc_cache -> docs_cache.files\n if (migrated.doc_cache && Object.keys(migrated.doc_cache).length > 0) {\n migrated.docs_cache.files = { ...migrated.doc_cache };\n changes.push('Moved doc_cache: -> docs_cache.files:');\n delete migrated.doc_cache;\n }\n\n // Migrate docs.paths -> docs_cache.lookup_path\n if (migrated.docs?.paths && migrated.docs.paths.length > 0) {\n migrated.docs_cache.lookup_path = [...migrated.docs.paths];\n changes.push('Moved docs.paths: -> docs_cache.lookup_path:');\n }\n\n // Remove old docs: key\n if (migrated.docs) {\n delete migrated.docs;\n changes.push('Removed docs: key');\n }\n\n return {\n config: migrated,\n fromFormat: 'f02',\n toFormat: 'f03',\n changed: changes.length > 0,\n changes,\n };\n}\n\n// =============================================================================\n// Public API\n// =============================================================================\n\n/\n Detect the format version of a config.\n * Returns INITIAL_FORMAT ('f01') if no tbd_format field is present.\n /\nexport function detectFormat(config: RawConfig): FormatVersion {\n const format = config.tbd_format;\n if (!format) {\n return INITIAL_FORMAT;\n }\n if (format in FORMAT_HISTORY) {\n return format as FormatVersion;\n }\n // Unknown format - treat as latest (will fail validation if incompatible)\n return CURRENT_FORMAT;\n}\n\n/\n Check if a config needs migration.\n /\nexport function needsMigration(config: RawConfig): boolean {\n const currentFormat = detectFormat(config);\n return currentFormat !== CURRENT_FORMAT;\n}\n\n/\n Migrate a config to the latest format version.\n \n This function applies all necessary migrations in sequence.\n * It does NOT populate doc_cache - that requires file system access\n * and should be done separately during setup.\n \n @param config - The raw config to migrate\n * @returns Migration result with the migrated config and change log\n /\nexport function migrateToLatest(config: RawConfig): MigrationResult {\n const fromFormat = detectFormat(config);\n\n if (fromFormat === CURRENT_FORMAT) {\n return {\n config,\n fromFormat,\n toFormat: CURRENT_FORMAT,\n changed: false,\n changes: [],\n };\n }\n\n let current = config;\n let currentFormat: FormatVersion = fromFormat;\n const allChanges: string[] = [];\n\n // Apply migrations in sequence\n if (currentFormat === 'f01') {\n const result = migrate_f01_to_f02(current);\n current = result.config;\n currentFormat = 'f02' as FormatVersion;\n allChanges.push(...result.changes);\n }\n\n if (currentFormat === 'f02') {\n const result = migrate_f02_to_f03(current);\n current = result.config;\n currentFormat = 'f03' as FormatVersion;\n allChanges.push(...result.changes);\n }\n\n // Add more migrations here as new format versions are added\n\n return {\n config: current,\n fromFormat,\n toFormat: currentFormat,\n changed: allChanges.length > 0,\n changes: allChanges,\n };\n}\n\n/\n Check if a format version is compatible with the current tbd version.\n * Future format versions are considered incompatible (would need tbd upgrade).\n /\nexport function isCompatibleFormat(format: string): boolean {\n const formatVersions = Object.keys(FORMAT_HISTORY);\n const currentIndex = formatVersions.indexOf(CURRENT_FORMAT);\n const checkIndex = formatVersions.indexOf(format);\n\n if (checkIndex === -1) {\n // Unknown format - might be from a newer tbd version\n return false;\n }\n\n // Compatible if same or older format (we can migrate up)\n return checkIndex <= currentIndex;\n}\n\n/\n Get a human-readable description of what migrations will be applied.\n /\nexport function describeMigration(fromFormat: FormatVersion): string[] {\n const descriptions: string[] = [];\n let current = fromFormat;\n\n if (current === 'f01') {\n descriptions.push('f01 → f02: Add doc_cache configuration support');\n current = 'f02';\n }\n\n if (current === 'f02') {\n descriptions.push('f02 → f03: Consolidate doc_cache and docs into docs_cache');\n current = 'f03';\n }\n\n // Add more migration descriptions here\n\n return descriptions;\n}\n","/\n Config file operations.\n \n Config is stored at .tbd/config.yml and contains project-level settings.\n \n ⚠️ FORMAT VERSIONING: See tbd-format.ts for version history and migration rules.\n \n See: tbd-design.md §2.2.2 Config File\n /\n\nimport { readFile, mkdir, access } from 'node:fs/promises';\nimport { join, dirname, parse as parsePath } from 'node:path';\nimport { writeFile } from 'atomically';\nimport { parse as parseYaml } from 'yaml';\n\nimport { stringifyYaml } from '../utils/yaml-utils.js';\nimport type { Config, LocalState } from '../lib/types.js';\nimport { ConfigSchema, LocalStateSchema } from '../lib/schemas.js';\nimport { CONFIG_FILE, STATE_FILE, SYNC_BRANCH } from '../lib/paths.js';\nimport {\n CURRENT_FORMAT,\n needsMigration,\n migrateToLatest,\n isCompatibleFormat,\n type RawConfig,\n} from '../lib/tbd-format.js';\n\n/\n Error thrown when the config format version is from a newer tbd version.\n * This prevents older tbd versions from silently stripping new config fields.\n /\nexport class IncompatibleFormatError extends Error {\n constructor(\n public readonly foundFormat: string,\n public readonly supportedFormat: string,\n ) {\n super(\n `Config format '${foundFormat}' is from a newer tbd version.\\n` +\n `This tbd version supports up to format '${supportedFormat}'.\\n` +\n `Please upgrade tbd: npm install -g get-tbd@latest`,\n );\n this.name = 'IncompatibleFormatError';\n }\n}\n\n/\n Check if config format is compatible, throw if not.\n * This prevents older tbd versions from silently stripping fields added by newer versions.\n /\nfunction checkFormatCompatibility(data: RawConfig): void {\n const format = data.tbd_format;\n if (format && !isCompatibleFormat(format)) {\n throw new IncompatibleFormatError(format, CURRENT_FORMAT);\n }\n}\n\n/\n Create default config for a new project.\n * @param prefix - Required: the project prefix for display IDs (e.g., \"proj\", \"myapp\")\n /\nfunction createDefaultConfig(version: string, prefix: string): Config {\n return ConfigSchema.parse({\n tbd_format: CURRENT_FORMAT,\n tbd_version: version,\n sync: {\n branch: SYNC_BRANCH,\n remote: 'origin',\n },\n display: {\n id_prefix: prefix,\n },\n settings: {\n auto_sync: false,\n doc_auto_sync_hours: 24,\n },\n });\n}\n\n/\n Initialize a new config file with default settings.\n * Creates .tbd directory if it doesn't exist.\n * @param prefix - Required: the project prefix for display IDs (e.g., \"proj\", \"myapp\")\n /\nexport async function initConfig(\n baseDir: string,\n version: string,\n prefix: string,\n): Promise<Config> {\n const tbdDir = join(baseDir, '.tbd');\n await mkdir(tbdDir, { recursive: true });\n\n const config = createDefaultConfig(version, prefix);\n await writeConfig(baseDir, config);\n\n return config;\n}\n\n/\n Read config from file with automatic migration if needed.\n \n ⚠️ FORMAT VERSIONING: See tbd-format.ts for version history and migration rules.\n \n @throws {IncompatibleFormatError} If config is from a newer tbd version.\n * @throws If config file doesn't exist or is invalid.\n /\nexport async function readConfig(baseDir: string): Promise<Config> {\n const configPath = join(baseDir, CONFIG_FILE);\n const content = await readFile(configPath, 'utf-8');\n const data = parseYaml(content) as RawConfig;\n\n // Check for incompatible (future) format versions first\n checkFormatCompatibility(data);\n\n // Check if migration is needed (for older formats)\n if (needsMigration(data)) {\n const result = migrateToLatest(data);\n // Note: We don't automatically write the migrated config here.\n // Migration writes should be explicit via writeConfig() after setup.\n return ConfigSchema.parse(result.config);\n }\n\n return ConfigSchema.parse(data);\n}\n\n/\n Read config from file, returning migration info if a migration was applied.\n * Use this when you need to know if the config was migrated.\n \n @throws {IncompatibleFormatError} If config is from a newer tbd version.\n /\nexport async function readConfigWithMigration(\n baseDir: string,\n): Promise<{ config: Config; migrated: boolean; changes: string[] }> {\n const configPath = join(baseDir, CONFIG_FILE);\n const content = await readFile(configPath, 'utf-8');\n const data = parseYaml(content) as RawConfig;\n\n // Check for incompatible (future) format versions first\n checkFormatCompatibility(data);\n\n if (needsMigration(data)) {\n const result = migrateToLatest(data);\n return {\n config: ConfigSchema.parse(result.config),\n migrated: result.changed,\n changes: result.changes,\n };\n }\n\n return {\n config: ConfigSchema.parse(data),\n migrated: false,\n changes: [],\n };\n}\n\n/\n Write config to file with explanatory comments.\n /\nexport async function writeConfig(baseDir: string, config: Config): Promise<void> {\n const configPath = join(baseDir, CONFIG_FILE);\n\n // Use lineWidth: 0 for compact config output (sortMapEntries is in defaults)\n const yaml = stringifyYaml(config, { lineWidth: 0 });\n\n // Add explanatory comments for docs_cache section\n let content = yaml;\n if (config.docs_cache && Object.keys(config.docs_cache).length > 0) {\n const docsCacheComment = `# Documentation cache configuration.\n# files: Maps destination paths (relative to .tbd/docs/) to source locations.\n# Sources can be:\n# - internal: prefix for bundled docs (e.g., \"internal:shortcuts/standard/code-review-and-commit.md\")\n# - Full URL for external docs (e.g., \"https://raw.githubusercontent.com/org/repo/main/file.md\")\n# lookup_path: Search paths for doc lookup (like shell $PATH). Earlier paths take precedence.\n#\n# To sync docs: tbd sync --docs\n# To check status: tbd sync --status\n#\n# Auto-sync: Docs are automatically synced when stale (default: every 24 hours).\n# Configure with settings.doc_auto_sync_hours (0 = disabled).\n`;\n content = content.replace('docs_cache:', docsCacheComment + 'docs_cache:');\n }\n\n await writeFile(configPath, content);\n}\n\n/\n Check if tbd is initialized in the given directory (immediate check only).\n * Returns true if .tbd/ directory exists directly in baseDir.\n /\nasync function hasTbdDir(dir: string): Promise<boolean> {\n const tbdDir = join(dir, '.tbd');\n try {\n await access(tbdDir);\n return true;\n } catch {\n return false;\n }\n}\n\n/\n Find the tbd repository root by walking up the directory tree.\n * Similar to how git finds .git/ directories.\n \n @param startDir - Directory to start searching from\n * @returns The tbd root directory path, or null if not found\n /\nexport async function findTbdRoot(startDir: string): Promise<string \| null> {\n let currentDir = startDir;\n const { root } = parsePath(startDir);\n\n while (currentDir !== root) {\n if (await hasTbdDir(currentDir)) {\n return currentDir;\n }\n currentDir = dirname(currentDir);\n }\n\n // Check root directory as well\n if (await hasTbdDir(root)) {\n return root;\n }\n\n return null;\n}\n\n/\n Check if tbd is initialized in the given directory or any parent directory.\n * Walks up the directory tree looking for .tbd/.\n /\nexport async function isInitialized(baseDir: string): Promise<boolean> {\n const root = await findTbdRoot(baseDir);\n return root !== null;\n}\n\n// =============================================================================\n// Local State Operations\n// =============================================================================\n\n/\n Read local state from .tbd/state.yml\n * Returns empty state if file doesn't exist.\n /\nexport async function readLocalState(baseDir: string): Promise<LocalState> {\n const statePath = join(baseDir, STATE_FILE);\n try {\n const content = await readFile(statePath, 'utf-8');\n const data: unknown = parseYaml(content);\n return LocalStateSchema.parse(data ?? {});\n } catch {\n // File doesn't exist or is invalid - return empty state\n return {};\n }\n}\n\n/\n Write local state to .tbd/state.yml\n /\nexport async function writeLocalState(baseDir: string, state: LocalState): Promise<void> {\n const statePath = join(baseDir, STATE_FILE);\n\n // Ensure .tbd directory exists\n await mkdir(join(baseDir, '.tbd'), { recursive: true });\n\n // Use lineWidth: 0 for compact state output (sortMapEntries is in defaults)\n const yaml = stringifyYaml(state, { lineWidth: 0 });\n\n await writeFile(statePath, yaml);\n}\n\n/\n Update specific fields in local state (merge with existing).\n /\nexport async function updateLocalState(\n baseDir: string,\n updates: Partial<LocalState>,\n): Promise<LocalState> {\n const current = await readLocalState(baseDir);\n const updated = { ...current, ...updates };\n await writeLocalState(baseDir, updated);\n return updated;\n}\n\n// =============================================================================\n// Welcome State Operations\n// =============================================================================\n\n/\n Check if the user has seen the welcome message.\n /\nexport async function hasSeenWelcome(baseDir: string): Promise<boolean> {\n const state = await readLocalState(baseDir);\n return state.welcome_seen === true;\n}\n\n/\n Mark the welcome message as seen.\n /\nexport async function markWelcomeSeen(baseDir: string): Promise<void> {\n await updateLocalState(baseDir, { welcome_seen: true });\n}\n","/\n CLI error types and helpers for structured error handling.\n \n See: research-modern-typescript-cli-patterns.md#3-base-command-pattern\n /\n\nimport { findTbdRoot } from '../../file/config.js';\n\n/\n Find and return the tbd repository root, starting from the given directory.\n * Walks up the directory tree to find .tbd/.\n \n @param cwd - Working directory to start from (defaults to process.cwd())\n * @returns The tbd repository root path\n * @throws NotInitializedError if tbd is not initialized in any parent directory\n /\nexport async function requireInit(cwd: string = process.cwd()): Promise<string> {\n const tbdRoot = await findTbdRoot(cwd);\n if (!tbdRoot) {\n throw new NotInitializedError();\n }\n return tbdRoot;\n}\n\n/\n Base CLI error. Thrown for operational errors that should exit\n * with a specific code but don't need stack traces.\n /\nexport class CLIError extends Error {\n constructor(\n message: string,\n public exitCode = 1,\n ) {\n super(message);\n this.name = 'CLIError';\n }\n}\n\n/\n Validation error for usage/argument issues.\n * Exit code 2 follows Unix convention.\n /\nexport class ValidationError extends CLIError {\n constructor(message: string) {\n super(message, 2);\n this.name = 'ValidationError';\n }\n}\n\n/\n Not initialized error - tbd repository not found.\n * Uses the stable error message defined in design spec §5.6.\n /\nexport class NotInitializedError extends CLIError {\n constructor(message = \"Not a tbd repository (run 'tbd setup --auto --prefix=<name>' first)\") {\n super(message, 1);\n this.name = 'NotInitializedError';\n }\n}\n\n/\n Entity not found error (issue, config, etc.).\n /\nexport class NotFoundError extends CLIError {\n constructor(entityType: string, id: string) {\n super(`${entityType} not found: ${id}`, 1);\n this.name = 'NotFoundError';\n }\n}\n\n/\n Sync/conflict error.\n /\nexport class SyncError extends CLIError {\n constructor(message: string) {\n super(message, 1);\n this.name = 'SyncError';\n }\n}\n\n/\n Worktree missing error - the data-sync-worktree directory doesn't exist.\n * This indicates the worktree was never created or was deleted.\n * See: tbd-design.md §2.3.6 Worktree Error Classes\n /\nexport class WorktreeMissingError extends CLIError {\n constructor(\n message = \"Worktree not found at .tbd/data-sync-worktree/. Run 'tbd doctor --fix' to repair.\",\n ) {\n super(message, 1);\n this.name = 'WorktreeMissingError';\n }\n}\n\n/\n Worktree corrupted error - the worktree exists but is invalid.\n * This can occur when the .git file is missing or points to an invalid location.\n * See: tbd-design.md §2.3.6 Worktree Error Classes\n /\nexport class WorktreeCorruptedError extends CLIError {\n constructor(\n message = \"Worktree at .tbd/data-sync-worktree/ is corrupted. Run 'tbd doctor --fix' to repair.\",\n ) {\n super(message, 1);\n this.name = 'WorktreeCorruptedError';\n }\n}\n\n/\n Sync branch error - issues with the tbd-sync branch.\n * This can indicate the branch is missing, orphaned, or has diverged.\n * See: tbd-design.md §2.3.6 Worktree Error Classes\n /\nexport class SyncBranchError extends CLIError {\n constructor(message: string) {\n super(message, 1);\n this.name = 'SyncBranchError';\n }\n}\n","/\n Base command class for CLI handlers.\n \n See: research-modern-typescript-cli-patterns.md#3-base-command-pattern\n /\n\nimport type { Command } from 'commander';\n\nimport type { CommandContext, OutputFormat } from './context.js';\nimport { getCommandContext } from './context.js';\nimport { OutputManager } from './output.js';\nimport { CLIError } from './errors.js';\n\n/\n Base class for all CLI command handlers.\n * Provides common functionality for context, output, and error handling.\n /\nexport abstract class BaseCommand {\n protected ctx: CommandContext;\n protected output: OutputManager;\n\n constructor(command: Command) {\n this.ctx = getCommandContext(command);\n this.output = new OutputManager(this.ctx);\n }\n\n /\n Execute an async action with error handling.\n * Catches errors and formats them consistently.\n /\n protected async execute<T>(action: () => Promise<T>, errorMessage: string): Promise<T> {\n try {\n return await action();\n } catch (error) {\n if (error instanceof CLIError) {\n this.output.error(error.message);\n throw error;\n }\n this.output.error(errorMessage, error instanceof Error ? error : undefined);\n throw new CLIError(errorMessage);\n }\n }\n\n /\n Check if dry-run mode is enabled and log the action.\n * Returns true if in dry-run mode (caller should skip the actual action).\n /\n protected checkDryRun(message: string, details?: object): boolean {\n if (this.ctx.dryRun) {\n this.output.dryRun(message, details);\n return true;\n }\n return false;\n }\n\n /\n Abstract method that subclasses must implement.\n * Signature varies by command (positional args + options object).\n /\n abstract run(...args: unknown[]): Promise<void>;\n}\n\n/\n Helper to get output format from context.\n /\nexport function getOutputFormat(ctx: CommandContext): OutputFormat {\n return ctx.json ? 'json' : 'text';\n}\n","/\n File system utility functions.\n /\n\nimport { access } from 'node:fs/promises';\n\n/\n Check if a path exists on the filesystem.\n /\nexport async function pathExists(path: string): Promise<boolean> {\n try {\n await access(path);\n return true;\n } catch {\n return false;\n }\n}\n","/\n Gitignore file utilities for idempotent pattern management.\n /\n\nimport { readFile } from 'node:fs/promises';\nimport { writeFile } from 'atomically';\nimport { pathExists } from './file-utils.js';\n\n/\n Check if a pattern exists in gitignore content.\n * Matches exact lines, normalizing trailing slashes for directories.\n /\nexport function hasGitignorePattern(content: string, pattern: string): boolean {\n const normalizedPattern = pattern.replace(/\\/+$/, '');\n const lines = content.split('\\n');\n\n for (const line of lines) {\n const trimmed = line.trim();\n // Skip comments and empty lines\n if (trimmed === '' \|\| trimmed.startsWith('#')) continue;\n\n const normalizedLine = trimmed.replace(/\\/+$/, '');\n if (normalizedLine === normalizedPattern) {\n return true;\n }\n }\n return false;\n}\n\n/\n Ensure patterns exist in a .gitignore file.\n * Creates file if missing. Appends only missing patterns.\n * Always uses atomic write.\n \n @param gitignorePath - Path to .gitignore file\n * @param patterns - Patterns to ensure exist (can include comments)\n * @param header - Optional header comment for new patterns section\n /\nexport async function ensureGitignorePatterns(\n gitignorePath: string,\n patterns: string[],\n header?: string,\n): Promise<{ added: string[]; skipped: string[]; created: boolean }> {\n // Read existing content or empty string\n let content = '';\n let created = false;\n\n if (await pathExists(gitignorePath)) {\n content = await readFile(gitignorePath, 'utf-8');\n } else {\n created = true;\n }\n\n // Group patterns into entries: each entry is leading comments/blanks followed by\n // one or more actual patterns. Comments are only included if their associated\n // pattern(s) are new, preventing orphaned comment duplication on upgrades.\n const entries: { preamble: string[]; patterns: string[] }[] = [];\n let currentPreamble: string[] = [];\n\n for (const pattern of patterns) {\n const trimmed = pattern.trim();\n if (trimmed === '' \|\| trimmed.startsWith('#')) {\n currentPreamble.push(pattern);\n } else {\n entries.push({ preamble: currentPreamble, patterns: [trimmed] });\n currentPreamble = [];\n }\n }\n // Trailing comments/blanks (no associated pattern) form their own entry\n if (currentPreamble.length > 0) {\n entries.push({ preamble: currentPreamble, patterns: [] });\n }\n\n // Determine which entries have new patterns to add\n const added: string[] = [];\n const skipped: string[] = [];\n const linesToAppend: string[] = [];\n\n for (const entry of entries) {\n const newPatterns = entry.patterns.filter((p) => !hasGitignorePattern(content, p));\n const existingPatterns = entry.patterns.filter((p) => hasGitignorePattern(content, p));\n skipped.push(...existingPatterns);\n\n if (newPatterns.length > 0) {\n added.push(...newPatterns);\n // Include preamble comments only when their associated pattern is new\n linesToAppend.push(...entry.preamble, ...newPatterns);\n }\n }\n\n // If nothing new to add, return early\n if (added.length === 0) {\n return { added: [], skipped, created: false };\n }\n\n // Build new content\n let newContent = content;\n\n // Ensure content ends with newline before appending\n if (newContent && !newContent.endsWith('\\n')) {\n newContent += '\\n';\n }\n\n // Add blank line separator if file has existing content\n if (newContent && !newContent.endsWith('\\n\\n')) {\n newContent += '\\n';\n }\n\n // Add header if provided\n if (header) {\n newContent += header + '\\n';\n }\n\n // Add only entries with new patterns\n newContent += linesToAppend.join('\\n') + '\\n';\n\n // Atomic write\n await writeFile(gitignorePath, newContent);\n\n return { added, skipped, created };\n}\n","/\n Prefix validation and beads prefix extraction module.\n \n Provides functions to validate prefixes and extract prefix from beads config.\n * Used by setup commands to validate user-provided prefixes and migrate from beads.\n /\n\nimport { readFile } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport { parse as parseYaml } from 'yaml';\n\n/* Maximum length for a valid prefix /\nconst MAX_PREFIX_LENGTH = 20;\n\n/* Minimum length for a valid prefix /\nconst MIN_PREFIX_LENGTH = 1;\n\n/* Recommended minimum length /\nconst RECOMMENDED_MIN_LENGTH = 2;\n\n/* Recommended maximum length /\nconst RECOMMENDED_MAX_LENGTH = 8;\n\n/\n Normalize a prefix string.\n * - Lowercases\n * - Removes invalid characters (keeps alphanumeric, dot, underscore)\n * - Truncates to max length\n /\nexport function normalizePrefix(s: string): string {\n if (!s) return '';\n\n // Lowercase and remove invalid characters (keep alphanumeric, dot, underscore)\n const normalized = s.toLowerCase().replace(/[^a-z0-9._]/g, '');\n\n // Truncate to max length\n return normalized.slice(0, MAX_PREFIX_LENGTH);\n}\n\n/\n Check if a prefix is valid (hard rules, always enforced).\n * - Must be 1-20 characters\n * - Must start with a letter (a-z)\n * - Must end with alphanumeric (a-z0-9)\n * - Middle characters can be alphanumeric, dot, or underscore\n * - No dashes allowed (breaks ID syntax)\n /\nexport function isValidPrefix(s: string): boolean {\n if (!s) return false;\n if (s.length < MIN_PREFIX_LENGTH \|\| s.length > MAX_PREFIX_LENGTH) return false;\n\n // First char must be a letter\n if (!/^[a-z]/.test(s)) return false;\n\n // Last char must be alphanumeric (for length > 1)\n if (s.length > 1 && !/[a-z0-9]$/.test(s)) return false;\n\n // All chars must be alphanumeric, dot, or underscore (no dashes!)\n return /^[a-z][a-z0-9._]$/.test(s);\n}\n\n/*\n Check if a prefix follows recommended format (soft rules).\n * - Must be 2-8 characters\n * - Must be alphabetic only (a-z)\n \n Prefixes that don't match this can still be used with --force.\n /\nexport function isRecommendedPrefix(s: string): boolean {\n if (!s) return false;\n if (s.length < RECOMMENDED_MIN_LENGTH \|\| s.length > RECOMMENDED_MAX_LENGTH) return false;\n return /^[a-z]+$/.test(s);\n}\n\n/\n Get prefix from existing beads config.\n \n Looks for .beads/config.yaml and extracts display.id_prefix\n \n @param cwd Current working directory\n * @returns The beads prefix, or null if not found\n /\nexport async function getBeadsPrefix(cwd: string): Promise<string \| null> {\n try {\n const configPath = join(cwd, '.beads', 'config.yaml');\n const content = await readFile(configPath, 'utf-8');\n const config = parseYaml(content) as Record<string, unknown>;\n\n const display = config?.display as Record<string, unknown> \| undefined;\n const prefix = display?.id_prefix;\n\n if (typeof prefix === 'string' && isValidPrefix(prefix)) {\n return prefix;\n }\n\n return null;\n } catch {\n return null;\n }\n}\n","/\n Time utilities for tbd.\n \n All timestamps should be ISO 8601 UTC format with Z suffix.\n * Use these functions instead of raw Date calls for consistency.\n /\n\n/\n Get current time as ISO 8601 UTC string.\n * Use this when recording timestamps for new/updated issues.\n /\nexport function now(): string {\n return new Date().toISOString();\n}\n\n/\n Get current time as Date object.\n * Use this when you need date arithmetic or comparisons.\n /\nexport function nowDate(): Date {\n return new Date();\n}\n\n/\n Parse a timestamp string to Date object.\n * Returns null if the timestamp is invalid.\n /\nexport function parseDate(timestamp: string \| undefined \| null): Date \| null {\n if (!timestamp) return null;\n try {\n const date = new Date(timestamp);\n if (isNaN(date.getTime())) return null;\n return date;\n } catch {\n return null;\n }\n}\n\n/\n Normalize any timestamp to ISO 8601 UTC format with Z suffix.\n * Handles various formats including timezone offsets like -08:00.\n * Returns null if the timestamp is invalid or missing.\n /\nexport function normalizeTimestamp(timestamp: string \| undefined \| null): string \| null {\n const date = parseDate(timestamp);\n return date?.toISOString() ?? null;\n}\n\n/\n Check if a timestamp string is valid.\n /\nexport function isValidTimestamp(timestamp: string \| undefined \| null): boolean {\n return parseDate(timestamp) !== null;\n}\n\n/\n Get current time as a filename-safe timestamp.\n * Replaces colons with dashes and removes milliseconds for filesystem compatibility.\n /\nexport function nowFilenameTimestamp(): string {\n return new Date()\n .toISOString()\n .replace(/:/g, '-')\n .replace(/\\.\\d+Z$/, 'Z');\n}\n","/\n Git utilities for sync operations.\n \n Provides:\n * - Isolated index operations (protect user's staging area)\n * - Field-level merge algorithm\n * - Push retry with exponential backoff\n \n See: tbd-design.md §3.3 Sync Operations\n /\n\nimport { execFile } from 'node:child_process';\nimport { mkdir } from 'node:fs/promises';\nimport { promisify } from 'node:util';\nimport { join } from 'node:path';\n\nimport { writeFile } from 'atomically';\n\nimport type { Issue } from '../lib/types.js';\nimport { now, nowFilenameTimestamp } from '../utils/time-utils.js';\n\nconst execFileAsync = promisify(execFile);\n\n/\n Maximum buffer size for git command output.\n \n Node.js child_process.execFile() defaults to 1MB (1024 * 1024 bytes).\n * When exceeded, the child process is terminated with \"stdout maxBuffer length exceeded\".\n * Git commands like push/fetch with verbose output or diff on large changesets can exceed 1MB.\n \n See: https://nodejs.org/api/child_process.html#child_processexecfilefile-args-options-callback\n /\nconst GIT_MAX_BUFFER = 50 1024 * 1024; // 50MB\n\n/*\n Execute a git command and return stdout.\n * Uses execFile for security - prevents shell injection attacks.\n /\nexport async function git(...args: string[]): Promise<string> {\n const { stdout } = await execFileAsync('git', args, { maxBuffer: GIT_MAX_BUFFER });\n return stdout.trim();\n}\n\n// =============================================================================\n// Git Version Detection\n// See: plan spec §3.4 Git Integration Architecture\n// =============================================================================\n\n/\n Minimum Git version required.\n * Git 2.42 (August 2023) introduced `git worktree add --orphan` which tbd requires.\n /\nexport const MIN_GIT_VERSION = '2.42.0';\n\n/\n Parsed Git version information.\n /\n/\n Find the git repository root directory.\n * Uses `git rev-parse --show-toplevel` which returns the absolute path.\n \n @param cwd - Directory to start from (default: process.cwd())\n * @returns Absolute path to the git root, or null if not in a git repo\n /\nexport async function findGitRoot(cwd?: string): Promise<string \| null> {\n try {\n const args = ['rev-parse', '--show-toplevel'];\n if (cwd) {\n args.unshift('-C', cwd);\n }\n return await git(...args);\n } catch {\n return null;\n }\n}\n\n/\n Check if the current directory is inside a git repository.\n /\nexport async function isInGitRepo(cwd?: string): Promise<boolean> {\n try {\n const args = ['rev-parse', '--is-inside-work-tree'];\n if (cwd) {\n args.unshift('-C', cwd);\n }\n const result = await git(...args);\n return result === 'true';\n } catch {\n return false;\n }\n}\n\nexport interface GitVersion {\n major: number;\n minor: number;\n patch: number;\n raw: string;\n}\n\n/\n Get the installed Git version.\n \n @returns Parsed version information\n * @throws Error if git is not installed or version cannot be parsed\n /\nexport async function getGitVersion(): Promise<GitVersion> {\n const versionOutput = await git('--version');\n // Output format: \"git version 2.42.0\" or \"git version 2.42.0.windows.1\"\n const versionRegex = /git version (\\d+)\\.(\\d+)\\.(\\d+)/;\n const match = versionRegex.exec(versionOutput);\n\n const major = match?.[1];\n const minor = match?.[2];\n const patch = match?.[3];\n\n if (!major \|\| !minor \|\| !patch) {\n throw new Error(`Unable to parse git version from: ${versionOutput}`);\n }\n\n return {\n major: parseInt(major, 10),\n minor: parseInt(minor, 10),\n patch: parseInt(patch, 10),\n raw: versionOutput,\n };\n}\n\n/\n Compare two version strings.\n \n @returns -1 if a < b, 0 if a === b, 1 if a > b\n /\nexport function compareVersions(a: GitVersion, b: string): number {\n const parts = b.split('.');\n const bMajor = parseInt(parts[0] ?? '0', 10);\n const bMinor = parseInt(parts[1] ?? '0', 10);\n const bPatch = parseInt(parts[2] ?? '0', 10);\n\n if (a.major !== bMajor) return a.major < bMajor ? -1 : 1;\n if (a.minor !== bMinor) return a.minor < bMinor ? -1 : 1;\n if (a.patch !== bPatch) return a.patch < bPatch ? -1 : 1;\n return 0;\n}\n\n/\n Check if the installed Git version meets minimum requirements.\n \n @returns Object with version info and whether it meets requirements\n * @throws Error with upgrade instructions if Git version is too old\n /\nexport async function checkGitVersion(): Promise<{\n version: GitVersion;\n supported: boolean;\n}> {\n const version = await getGitVersion();\n const supported = compareVersions(version, MIN_GIT_VERSION) >= 0;\n return { version, supported };\n}\n\n/\n Require minimum Git version, throwing an error if not met.\n /\nexport async function requireGitVersion(): Promise<GitVersion> {\n const { version, supported } = await checkGitVersion();\n if (!supported) {\n throw new Error(getUpgradeInstructions(version));\n }\n return version;\n}\n\n/\n Get platform-specific upgrade instructions.\n * Points to official documentation rather than detailed commands for easier maintenance.\n /\nfunction getUpgradeInstructions(currentVersion: GitVersion): string {\n const platform = process.platform;\n const versionStr = `${currentVersion.major}.${currentVersion.minor}.${currentVersion.patch}`;\n\n let upgradeUrl: string;\n switch (platform) {\n case 'darwin':\n upgradeUrl = 'https://git-scm.com/download/mac';\n break;\n case 'linux':\n upgradeUrl = 'https://git-scm.com/download/linux';\n break;\n case 'win32':\n upgradeUrl = 'https://git-scm.com/download/win';\n break;\n default:\n upgradeUrl = 'https://git-scm.com/downloads';\n }\n\n return `Git ${versionStr} detected. Git ${MIN_GIT_VERSION}+ required for tbd.\\nUpgrade: ${upgradeUrl}`;\n}\n\n/\n Execute a git command with isolated index.\n * This protects the user's staging area during sync operations.\n \n See: tbd-design.md §3.3.2 Writing to Sync Branch\n /\nexport async function withIsolatedIndex<T>(fn: () => Promise<T>): Promise<T> {\n const gitDir = await git('rev-parse', '--git-dir');\n const isolatedIndex = join(gitDir, 'tbd-index');\n const originalIndex = process.env.GIT_INDEX_FILE;\n\n try {\n process.env.GIT_INDEX_FILE = isolatedIndex;\n return await fn();\n } finally {\n if (originalIndex) {\n process.env.GIT_INDEX_FILE = originalIndex;\n } else {\n delete process.env.GIT_INDEX_FILE;\n }\n }\n}\n\n/\n Commit changes to sync branch using isolated index.\n /\nexport async function commitToSyncBranch(\n syncBranch: string,\n message: string,\n files: string[],\n): Promise<string> {\n return withIsolatedIndex(async () => {\n // Try to read existing tree from sync branch\n try {\n await git('read-tree', syncBranch);\n } catch {\n // Branch doesn't exist - start fresh\n }\n\n // Add changed files to index\n for (const file of files) {\n await git('add', file);\n }\n\n // Write tree object\n const tree = await git('write-tree');\n\n // Get parent commit if exists\n let parent: string \| null = null;\n try {\n parent = await git('rev-parse', syncBranch);\n } catch {\n // No parent - orphan commit\n }\n\n // Create commit\n // Note: With execFile, we pass the message directly without shell quoting\n const commitArgs = ['commit-tree', tree, '-m', message];\n if (parent) {\n commitArgs.push('-p', parent);\n }\n\n const commit = await git(...commitArgs);\n\n // Update branch ref\n await git('update-ref', `refs/heads/${syncBranch}`, commit);\n\n return commit;\n });\n}\n\n/\n Field-level merge strategy types.\n /\ntype MergeStrategy = 'lww' \| 'union' \| 'max' \| 'immutable';\n\n/\n Field-level merge strategies for Issue fields.\n * See: tbd-design.md §3.5 Merge Rules\n /\nconst FIELD_STRATEGIES: Record<keyof Issue, MergeStrategy> = {\n // Immutable - never change after creation\n type: 'immutable',\n id: 'immutable',\n created_at: 'immutable',\n created_by: 'immutable',\n\n // LWW (Last-Write-Wins) - compare updated_at\n version: 'max',\n kind: 'lww',\n title: 'lww',\n description: 'lww',\n notes: 'lww',\n status: 'lww',\n priority: 'lww',\n assignee: 'lww',\n parent_id: 'lww',\n child_order_hints: 'lww',\n updated_at: 'max',\n closed_at: 'lww',\n close_reason: 'lww',\n due_date: 'lww',\n deferred_until: 'lww',\n spec_path: 'lww',\n\n // Union - combine arrays, deduplicate\n labels: 'union',\n dependencies: 'union',\n\n // Extensions - LWW for whole object\n extensions: 'lww',\n};\n\n/\n Conflict entry for attic storage.\n /\nexport interface ConflictEntry {\n issue_id: string;\n field: string;\n timestamp: string;\n lost_value: unknown;\n winner_value: unknown;\n local_version: number;\n remote_version: number;\n resolution: 'lww' \| 'union' \| 'manual';\n}\n\n/\n Merge result with merged issue and any conflicts.\n /\nexport interface MergeResult {\n merged: Issue;\n conflicts: ConflictEntry[];\n}\n\n/\n Deep equality check for values.\n /\nexport function deepEqual(a: unknown, b: unknown): boolean {\n if (a === b) return true;\n if (a === null \|\| b === null) return a === b;\n if (typeof a !== typeof b) return false;\n\n if (Array.isArray(a) && Array.isArray(b)) {\n if (a.length !== b.length) return false;\n return a.every((item, i) => deepEqual(item, b[i]));\n }\n\n if (typeof a === 'object' && typeof b === 'object') {\n const aKeys = Object.keys(a);\n const bKeys = Object.keys(b);\n if (aKeys.length !== bKeys.length) return false;\n return aKeys.every((key) =>\n deepEqual((a as Record<string, unknown>)[key], (b as Record<string, unknown>)[key]),\n );\n }\n\n return false;\n}\n\n/\n Union arrays with deduplication.\n /\nfunction unionArrays<T>(a: T[], b: T[]): T[] {\n const result = [...a];\n for (const item of b) {\n if (!result.some((existing) => deepEqual(existing, item))) {\n result.push(item);\n }\n }\n return result;\n}\n\n/\n Create an attic entry for a conflict.\n /\nfunction createConflictEntry(\n issueId: string,\n field: string,\n lostValue: unknown,\n winnerValue: unknown,\n localVersion: number,\n remoteVersion: number,\n resolution: 'lww' \| 'union' \| 'manual',\n): ConflictEntry {\n const timestamp = nowFilenameTimestamp();\n\n return {\n issue_id: issueId,\n field,\n timestamp,\n lost_value: lostValue,\n winner_value: winnerValue,\n local_version: localVersion,\n remote_version: remoteVersion,\n resolution,\n };\n}\n\n/\n Three-way merge algorithm for issues.\n * See: tbd-design.md §3.4 Conflict Detection and Resolution\n \n @param base - Common ancestor (null if new issue)\n * @param local - Local version\n * @param remote - Remote version\n /\nexport function mergeIssues(base: Issue \| null, local: Issue, remote: Issue): MergeResult {\n const conflicts: ConflictEntry[] = [];\n\n // If no base, one was created independently - LWW based on created_at\n if (!base) {\n const localTime = new Date(local.created_at).getTime();\n const remoteTime = new Date(remote.created_at).getTime();\n\n if (localTime <= remoteTime) {\n // Local was created first - it wins\n if (!deepEqual(local, remote)) {\n conflicts.push(\n createConflictEntry(\n remote.id,\n 'whole_issue',\n remote,\n local,\n remote.version,\n local.version,\n 'lww',\n ),\n );\n }\n return { merged: local, conflicts };\n } else {\n // Remote was created first - it wins\n if (!deepEqual(local, remote)) {\n conflicts.push(\n createConflictEntry(\n local.id,\n 'whole_issue',\n local,\n remote,\n local.version,\n remote.version,\n 'lww',\n ),\n );\n }\n return { merged: remote, conflicts };\n }\n }\n\n // Field-by-field merge\n const merged = { ...base } as Issue;\n\n for (const [field, strategy] of Object.entries(FIELD_STRATEGIES)) {\n const key = field as keyof Issue;\n const localVal = local[key];\n const remoteVal = remote[key];\n const baseVal = base[key];\n\n // Skip if both unchanged from base\n if (deepEqual(localVal, baseVal) && deepEqual(remoteVal, baseVal)) {\n continue;\n }\n\n // Only one changed - take changed value\n if (deepEqual(localVal, baseVal)) {\n (merged as Record<string, unknown>)[key] = remoteVal;\n continue;\n }\n if (deepEqual(remoteVal, baseVal)) {\n (merged as Record<string, unknown>)[key] = localVal;\n continue;\n }\n\n // Both changed - apply strategy\n switch (strategy) {\n case 'immutable':\n // Keep base value (shouldn't change)\n break;\n\n case 'lww': {\n // Compare updated_at timestamps\n const localTime = new Date(local.updated_at).getTime();\n const remoteTime = new Date(remote.updated_at).getTime();\n\n if (localTime >= remoteTime) {\n (merged as Record<string, unknown>)[key] = localVal;\n conflicts.push(\n createConflictEntry(\n local.id,\n field,\n remoteVal,\n localVal,\n local.version,\n remote.version,\n 'lww',\n ),\n );\n } else {\n (merged as Record<string, unknown>)[key] = remoteVal;\n conflicts.push(\n createConflictEntry(\n local.id,\n field,\n localVal,\n remoteVal,\n local.version,\n remote.version,\n 'lww',\n ),\n );\n }\n break;\n }\n\n case 'union':\n // Combine arrays and deduplicate\n (merged as Record<string, unknown>)[key] = unionArrays(\n localVal as unknown[],\n remoteVal as unknown[],\n );\n break;\n\n case 'max':\n // Take maximum value\n (merged as Record<string, unknown>)[key] = Math.max(\n localVal as number,\n remoteVal as number,\n );\n break;\n }\n }\n\n // Always increment version after merge\n merged.version = Math.max(local.version, remote.version) + 1;\n merged.updated_at = now();\n\n return { merged, conflicts };\n}\n\n/\n Maximum retry attempts for push operations.\n /\nconst MAX_PUSH_RETRIES = 3;\n\n/\n Check if error is a non-fast-forward rejection.\n /\nfunction isNonFastForward(error: unknown): boolean {\n const msg = error instanceof Error ? error.message : String(error);\n return (\n msg.includes('non-fast-forward') \|\| msg.includes('fetch first') \|\| msg.includes('rejected')\n );\n}\n\n/\n Push result with retry information.\n /\nexport interface PushResult {\n success: boolean;\n attempt: number;\n conflicts?: ConflictEntry[];\n error?: string;\n}\n\n/\n Push with retry and merge on conflict.\n * See: tbd-design.md §3.3.3 Sync Algorithm\n \n @param syncBranch - The sync branch name\n * @param remote - The remote name\n * @param onMergeNeeded - Callback to merge remote changes\n /\nexport async function pushWithRetry(\n syncBranch: string,\n remote: string,\n onMergeNeeded: () => Promise<ConflictEntry[]>,\n): Promise<PushResult> {\n for (let attempt = 1; attempt <= MAX_PUSH_RETRIES; attempt++) {\n try {\n // Try to push\n await git('push', remote, syncBranch);\n return { success: true, attempt };\n } catch (error) {\n if (!isNonFastForward(error)) {\n // Unrecoverable error\n return {\n success: false,\n attempt,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n\n if (attempt === MAX_PUSH_RETRIES) {\n return {\n success: false,\n attempt,\n error: `Push failed after ${MAX_PUSH_RETRIES} attempts. Remote has conflicting changes.`,\n };\n }\n\n // Fetch and merge remote changes\n await git('fetch', remote, syncBranch);\n const conflicts = await onMergeNeeded();\n\n if (conflicts.length > 0) {\n // Return conflicts but continue trying\n return { success: false, attempt, conflicts };\n }\n\n // Loop to retry push\n }\n }\n\n return { success: false, attempt: MAX_PUSH_RETRIES, error: 'Unexpected error in push retry' };\n}\n\n/\n Get the current branch name.\n /\nexport async function getCurrentBranch(): Promise<string> {\n return git('rev-parse', '--abbrev-ref', 'HEAD');\n}\n\n/\n Check if a branch exists locally.\n /\nexport async function branchExists(branch: string): Promise<boolean> {\n try {\n await git('rev-parse', '--verify', `refs/heads/${branch}`);\n return true;\n } catch {\n return false;\n }\n}\n\n/\n Check if a remote branch exists.\n /\nexport async function remoteBranchExists(remote: string, branch: string): Promise<boolean> {\n try {\n await git('ls-remote', '--exit-code', remote, `refs/heads/${branch}`);\n return true;\n } catch {\n return false;\n }\n}\n\n/\n Get the remote URL.\n /\nexport async function getRemoteUrl(remote: string): Promise<string \| null> {\n try {\n return await git('remote', 'get-url', remote);\n } catch {\n return null;\n }\n}\n\n// =============================================================================\n// Worktree Management\n// See: tbd-design.md §2.3 Hidden Worktree Model\n// =============================================================================\n\nimport { access, rm, cp } from 'node:fs/promises';\nimport {\n WORKTREE_DIR,\n WORKTREE_DIR_NAME,\n TBD_DIR,\n DATA_SYNC_DIR_NAME,\n SYNC_BRANCH,\n} from '../lib/paths.js';\n\n/\n Check if the hidden worktree exists and is valid.\n /\nexport async function worktreeExists(baseDir: string): Promise<boolean> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n try {\n await access(worktreePath);\n // Also verify it's a valid git worktree by checking for .git file\n await access(join(worktreePath, '.git'));\n return true;\n } catch {\n return false;\n }\n}\n\n/\n Worktree health status values.\n * See: tbd-design.md §2.3.4 Worktree Health States\n /\nexport type WorktreeStatus = 'valid' \| 'missing' \| 'prunable' \| 'corrupted';\n\n/\n Worktree health status.\n /\nexport interface WorktreeHealth {\n /* Whether the worktree directory exists on disk /\n exists: boolean;\n /* Whether the worktree is valid and functional /\n valid: boolean;\n /* Detailed status: valid, missing, prunable, or corrupted /\n status: WorktreeStatus;\n /* The branch checked out in the worktree /\n branch: string \| null;\n /* The commit HEAD points to /\n commit: string \| null;\n /* Error message if status is not 'valid' /\n error?: string;\n}\n\n/\n Check worktree health and return status.\n * See: tbd-design.md §2.3 Worktree Lifecycle\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §3\n /\nexport async function checkWorktreeHealth(baseDir: string): Promise<WorktreeHealth> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n // First check if git reports the worktree as prunable\n // This catches the case where worktree directory was deleted but git still tracks it\n try {\n const worktreeList = await git('-C', baseDir, 'worktree', 'list', '--porcelain');\n\n // Check if our worktree path appears in the list as prunable\n const lines = worktreeList.split('\\n');\n let foundWorktree = false;\n let isPrunable = false;\n\n for (let i = 0; i < lines.length; i++) {\n const line = lines[i];\n // Check if this entry is for our worktree path\n if (line?.startsWith('worktree ') && line.includes(WORKTREE_DIR_NAME)) {\n foundWorktree = true;\n // Look for prunable marker in subsequent lines until next worktree entry\n for (let j = i + 1; j < lines.length && !lines[j]?.startsWith('worktree '); j++) {\n if (lines[j]?.startsWith('prunable')) {\n isPrunable = true;\n break;\n }\n }\n break;\n }\n }\n\n if (isPrunable) {\n return {\n exists: false,\n valid: false,\n status: 'prunable',\n branch: null,\n commit: null,\n error: 'Worktree directory was deleted but git still tracks it. Run: git worktree prune',\n };\n }\n\n // If git doesn't know about the worktree, check if directory exists\n if (!foundWorktree) {\n try {\n await access(worktreePath);\n // Directory exists but git doesn't know about it - corrupted\n return {\n exists: true,\n valid: false,\n status: 'corrupted',\n branch: null,\n commit: null,\n error: 'Worktree directory exists but is not registered with git',\n };\n } catch {\n // Directory doesn't exist and git doesn't know about it - missing\n return {\n exists: false,\n valid: false,\n status: 'missing',\n branch: null,\n commit: null,\n };\n }\n }\n } catch {\n // git worktree list failed - likely not in a git repo\n // Fall through to directory-based checks\n }\n\n // Check if worktree directory exists\n try {\n await access(worktreePath);\n } catch {\n return {\n exists: false,\n valid: false,\n status: 'missing',\n branch: null,\n commit: null,\n };\n }\n\n // Check if it's a valid git worktree\n try {\n await access(join(worktreePath, '.git'));\n } catch {\n return {\n exists: true,\n valid: false,\n status: 'corrupted',\n branch: null,\n commit: null,\n error: 'Worktree directory exists but is not a valid git worktree (missing .git)',\n };\n }\n\n // Get current commit and branch info\n try {\n const commit = await git('-C', worktreePath, 'rev-parse', 'HEAD');\n let branch: string \| null = null;\n\n try {\n // Check if we're on detached HEAD pointing to tbd-sync\n const refName = await git('-C', worktreePath, 'symbolic-ref', '-q', 'HEAD');\n branch = refName.replace('refs/heads/', '');\n } catch {\n // Detached HEAD - expected state\n branch = null;\n }\n\n return { exists: true, valid: true, status: 'valid', branch, commit };\n } catch (error) {\n return {\n exists: true,\n valid: false,\n status: 'corrupted',\n branch: null,\n commit: null,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n/\n Initialize the hidden worktree for the tbd-sync branch.\n * Follows the decision tree from tbd-design.md §2.3.\n \n @param baseDir - The base directory of the repository\n * @param remote - The remote name (default: 'origin')\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n * @returns Path to the worktree or error message\n /\nexport async function initWorktree(\n baseDir: string,\n remote = 'origin',\n syncBranch: string = SYNC_BRANCH,\n): Promise<{ success: boolean; path?: string; created?: boolean; error?: string }> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n // Check if worktree already exists and is valid\n if (await worktreeExists(baseDir)) {\n return { success: true, path: worktreePath, created: false };\n }\n\n // Remove any stale worktree directory\n try {\n await rm(worktreePath, { recursive: true, force: true });\n } catch {\n // Ignore errors - directory might not exist\n }\n\n try {\n // Check if local branch exists\n const localExists = await branchExists(syncBranch);\n if (localExists) {\n // Create worktree on local branch (no --detach, so commits update the branch)\n // Note: Don't use --detach here - we want commits to update tbd-sync branch\n await git('-C', baseDir, 'worktree', 'add', worktreePath, syncBranch);\n return { success: true, path: worktreePath, created: true };\n }\n\n // Check if remote branch exists\n const remoteExists = await remoteBranchExists(remote, syncBranch);\n if (remoteExists) {\n // Fetch and create worktree from remote branch with local tracking branch\n await git('-C', baseDir, 'fetch', remote, syncBranch);\n // Use -b to create local branch tracking remote, not --detach\n // This ensures commits update the local branch which can then be pushed\n await git(\n '-C',\n baseDir,\n 'worktree',\n 'add',\n '-b',\n syncBranch,\n worktreePath,\n `${remote}/${syncBranch}`,\n );\n return { success: true, path: worktreePath, created: true };\n }\n\n // No branch exists - create orphan worktree (requires Git 2.42+)\n // Syntax: git worktree add --orphan -b <branch> <path>\n await requireGitVersion();\n await git('-C', baseDir, 'worktree', 'add', '--orphan', '-b', syncBranch, worktreePath);\n\n // Initialize the data-sync directory structure in the worktree\n const dataSyncPath = join(worktreePath, TBD_DIR, DATA_SYNC_DIR_NAME);\n await mkdir(join(dataSyncPath, 'issues'), { recursive: true });\n await mkdir(join(dataSyncPath, 'mappings'), { recursive: true });\n await mkdir(join(dataSyncPath, 'attic', 'conflicts'), { recursive: true });\n\n // Create initial commit in worktree\n await writeFile(join(dataSyncPath, 'meta.yml'), 'schema_version: 1\\n');\n await writeFile(join(dataSyncPath, 'issues', '.gitkeep'), '');\n await writeFile(join(dataSyncPath, 'mappings', '.gitkeep'), '');\n\n // Stage and commit the initial structure\n // Use --no-verify to bypass parent repo hooks (lefthook, husky, etc.)\n await git('-C', worktreePath, 'add', '.');\n await git('-C', worktreePath, 'commit', '--no-verify', '-m', 'Initialize tbd-sync branch');\n\n return { success: true, path: worktreePath, created: true };\n } catch (error) {\n return {\n success: false,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n/\n Update the hidden worktree to latest sync branch state.\n * Called after sync operations to ensure worktree reflects current state.\n \n @param baseDir - The base directory of the repository\n * @param remote - The remote name (default: 'origin')\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n /\nexport async function updateWorktree(\n baseDir: string,\n remote = 'origin',\n syncBranch: string = SYNC_BRANCH,\n): Promise<{ success: boolean; error?: string }> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n // Ensure worktree exists\n if (!(await worktreeExists(baseDir))) {\n const initResult = await initWorktree(baseDir, remote, syncBranch);\n if (!initResult.success) {\n return { success: false, error: initResult.error };\n }\n }\n\n try {\n // Fetch latest from remote\n try {\n await git('-C', baseDir, 'fetch', remote, syncBranch);\n } catch {\n // Remote fetch may fail if offline - that's ok\n }\n\n // Get the latest commit on the sync branch\n let targetCommit: string;\n try {\n // Try local branch first\n targetCommit = await git('-C', baseDir, 'rev-parse', `refs/heads/${syncBranch}`);\n } catch {\n try {\n // Fall back to remote tracking branch\n targetCommit = await git(\n '-C',\n baseDir,\n 'rev-parse',\n `refs/remotes/${remote}/${syncBranch}`,\n );\n } catch {\n // No remote either - worktree is already at latest\n return { success: true };\n }\n }\n\n // Update worktree to that commit (detached HEAD)\n await git('-C', worktreePath, 'checkout', '--detach', targetCommit);\n\n return { success: true };\n } catch (error) {\n return {\n success: false,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n// =============================================================================\n// Branch Health Checks\n// See: tbd-design.md §2.3 Hidden Worktree Model, plan spec §4b\n// =============================================================================\n\n/\n Local branch health status.\n /\nexport interface LocalBranchHealth {\n exists: boolean;\n orphaned: boolean;\n head?: string;\n}\n\n/\n Check local sync branch health.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n \n @param syncBranch - The sync branch name (default: 'tbd-sync')\n * @returns Health status indicating if branch exists and has commits\n /\nexport async function checkLocalBranchHealth(\n syncBranch: string = SYNC_BRANCH,\n): Promise<LocalBranchHealth> {\n try {\n const head = await git('rev-parse', `refs/heads/${syncBranch}`);\n return { exists: true, orphaned: false, head: head.trim() };\n } catch {\n // Check if branch ref exists but is orphaned (no commits)\n try {\n await git('show-ref', '--verify', `refs/heads/${syncBranch}`);\n return { exists: true, orphaned: true };\n } catch {\n return { exists: false, orphaned: false };\n }\n }\n}\n\n/\n Remote branch health status.\n /\nexport interface RemoteBranchHealth {\n exists: boolean;\n diverged: boolean;\n head?: string;\n}\n\n/\n Check remote sync branch health.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n \n @param remote - The remote name (default: 'origin')\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n * @returns Health status indicating if remote branch exists and divergence state\n /\nexport async function checkRemoteBranchHealth(\n remote = 'origin',\n syncBranch: string = SYNC_BRANCH,\n): Promise<RemoteBranchHealth> {\n try {\n await git('fetch', remote, syncBranch);\n const head = await git('rev-parse', `refs/remotes/${remote}/${syncBranch}`);\n const remoteHead = head.trim();\n\n // Check for divergence (only if local branch exists)\n let diverged = false;\n try {\n const mergeBase = await git('merge-base', syncBranch, `${remote}/${syncBranch}`);\n const localHead = await git('rev-parse', syncBranch);\n\n // Diverged if merge-base is neither local nor remote HEAD\n diverged = mergeBase.trim() !== localHead.trim() && mergeBase.trim() !== remoteHead;\n } catch {\n // Local branch doesn't exist - can't be diverged\n diverged = false;\n }\n\n return { exists: true, diverged, head: remoteHead };\n } catch {\n return { exists: false, diverged: false };\n }\n}\n\n/\n Sync consistency status.\n /\nexport interface SyncConsistency {\n /* Worktree HEAD commit SHA /\n worktreeHead: string;\n /* Local branch HEAD commit SHA /\n localHead: string;\n /* Remote branch HEAD commit SHA /\n remoteHead: string;\n /* Whether worktree HEAD matches local branch HEAD /\n worktreeMatchesLocal: boolean;\n /* Number of commits local is ahead of remote /\n localAhead: number;\n /* Number of commits local is behind remote /\n localBehind: number;\n}\n\n/\n Check consistency between worktree, local branch, and remote.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n \n @param baseDir - The base directory of the repository\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n * @param remote - The remote name (default: 'origin')\n * @returns Consistency status with HEAD comparisons and ahead/behind counts\n /\nexport async function checkSyncConsistency(\n baseDir: string,\n syncBranch: string = SYNC_BRANCH,\n remote = 'origin',\n): Promise<SyncConsistency> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n // Get worktree HEAD\n const worktreeHead = await git('-C', worktreePath, 'rev-parse', 'HEAD').catch(() => '');\n\n // Get local branch HEAD\n const localHead = await git('-C', baseDir, 'rev-parse', syncBranch).catch(() => '');\n\n // Get remote branch HEAD\n const remoteHead = await git('-C', baseDir, 'rev-parse', `${remote}/${syncBranch}`).catch(\n () => '',\n );\n\n // Calculate ahead/behind counts\n let localAhead = 0;\n let localBehind = 0;\n\n if (localHead && remoteHead) {\n try {\n const aheadOutput = await git(\n '-C',\n baseDir,\n 'rev-list',\n '--count',\n `${remote}/${syncBranch}..${syncBranch}`,\n );\n localAhead = parseInt(aheadOutput.trim(), 10) \|\| 0;\n } catch {\n // Ignore errors\n }\n\n try {\n const behindOutput = await git(\n '-C',\n baseDir,\n 'rev-list',\n '--count',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n localBehind = parseInt(behindOutput.trim(), 10) \|\| 0;\n } catch {\n // Ignore errors\n }\n }\n\n return {\n worktreeHead: worktreeHead.trim(),\n localHead: localHead.trim(),\n remoteHead: remoteHead.trim(),\n worktreeMatchesLocal: worktreeHead.trim() === localHead.trim(),\n localAhead,\n localBehind,\n };\n}\n\n/\n Remove the hidden worktree.\n * Used by doctor --fix when worktree is corrupted.\n /\nexport async function removeWorktree(\n baseDir: string,\n): Promise<{ success: boolean; error?: string }> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n try {\n // First try to properly remove via git\n try {\n await git('-C', baseDir, 'worktree', 'remove', worktreePath, '--force');\n } catch {\n // If git worktree remove fails, just delete the directory\n await rm(worktreePath, { recursive: true, force: true });\n }\n\n // Prune stale worktree references\n await git('-C', baseDir, 'worktree', 'prune');\n\n return { success: true };\n } catch (error) {\n return {\n success: false,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n/\n Repair an unhealthy worktree.\n \n Follows decision tree from spec Appendix E:\n * - PRUNABLE: git worktree prune, then recreate\n * - CORRUPTED: backup to .tbd/backups/, remove, then recreate\n * - MISSING: just create\n \n See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n \n @param baseDir - The base directory of the repository\n * @param status - Current worktree health status\n * @param remote - The remote name (default: 'origin')\n * @param syncBranch - The sync branch name (default: 'tbd-sync')\n /\nexport async function repairWorktree(\n baseDir: string,\n status: 'missing' \| 'prunable' \| 'corrupted',\n remote = 'origin',\n syncBranch: string = SYNC_BRANCH,\n): Promise<{ success: boolean; path?: string; backedUp?: string; error?: string }> {\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n try {\n // Always prune stale worktree entries first for missing and prunable states\n // This ensures git's worktree list is clean before creating a new worktree\n if (status === 'missing' \|\| status === 'prunable') {\n await git('-C', baseDir, 'worktree', 'prune');\n }\n\n // Handle corrupted status: backup before removal\n if (status === 'corrupted') {\n const backupsDir = join(baseDir, TBD_DIR, 'backups');\n await mkdir(backupsDir, { recursive: true });\n\n const timestamp = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 19);\n const backupPath = join(backupsDir, `corrupted-worktree-backup-${timestamp}`);\n\n // Copy corrupted worktree to backup before removal\n try {\n await cp(worktreePath, backupPath, { recursive: true });\n } catch {\n // If copy fails, the directory might not exist or be accessible\n // Continue with repair anyway\n }\n\n // Remove the corrupted worktree\n await rm(worktreePath, { recursive: true, force: true });\n await git('-C', baseDir, 'worktree', 'prune');\n\n // Initialize fresh worktree\n const result = await initWorktree(baseDir, remote, syncBranch);\n return { ...result, backedUp: backupPath };\n }\n\n // For missing or prunable (after prune), just initialize\n const result = await initWorktree(baseDir, remote, syncBranch);\n return result;\n } catch (error) {\n return {\n success: false,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n\n/\n Ensure worktree is attached to sync branch, not detached HEAD.\n * Old tbd versions (pre-v0.1.9) created worktrees with --detach flag.\n * This repairs them automatically.\n \n @param worktreePath - Path to the worktree directory\n * @returns true if worktree was detached and repaired, false if already attached\n /\nexport async function ensureWorktreeAttached(worktreePath: string): Promise<boolean> {\n try {\n const currentBranch = await git('-C', worktreePath, 'branch', '--show-current').catch(() => '');\n\n if (!currentBranch) {\n // Detached HEAD - re-attach to sync branch\n // This is a one-time repair for repos created with old tbd versions\n await git('-C', worktreePath, 'checkout', SYNC_BRANCH);\n return true; // Was detached, now repaired\n }\n\n return false; // Already attached\n } catch (error) {\n // If we can't check/fix, that's a problem but don't fail the operation\n console.warn('Warning: Could not check worktree HEAD status:', error);\n return false;\n }\n}\n\n/\n Migrate data from wrong location (.tbd/data-sync/) to worktree.\n \n Used when data was incorrectly written to the direct path instead of the worktree.\n * Per spec Appendix E:\n * 1. Backup to .tbd/backups/\n * 2. Copy issues/mappings from .tbd/data-sync/ to worktree\n * 3. Commit in worktree\n * 4. Optionally remove wrong location data\n \n See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n \n @param baseDir - The base directory of the repository\n * @param removeSource - Whether to remove data from wrong location after migration\n /\nexport async function migrateDataToWorktree(\n baseDir: string,\n removeSource = false,\n): Promise<{\n success: boolean;\n migratedCount: number;\n backupPath?: string;\n error?: string;\n}> {\n const wrongPath = join(baseDir, TBD_DIR, DATA_SYNC_DIR_NAME);\n const correctPath = join(baseDir, WORKTREE_DIR, TBD_DIR, DATA_SYNC_DIR_NAME);\n const worktreePath = join(baseDir, WORKTREE_DIR);\n\n try {\n // Ensure worktree is attached to sync branch (repair old tbd repos)\n await ensureWorktreeAttached(worktreePath);\n // Check if there's data in the wrong location\n const wrongIssuesPath = join(wrongPath, 'issues');\n const wrongMappingsPath = join(wrongPath, 'mappings');\n\n let issueFiles: string[] = [];\n let mappingFiles: string[] = [];\n\n try {\n const { readdir } = await import('node:fs/promises');\n issueFiles = await readdir(wrongIssuesPath).catch(() => []);\n mappingFiles = await readdir(wrongMappingsPath).catch(() => []);\n } catch {\n // Directory doesn't exist\n }\n\n // Filter out .gitkeep files\n issueFiles = issueFiles.filter((f) => f !== '.gitkeep');\n mappingFiles = mappingFiles.filter((f) => f !== '.gitkeep');\n\n if (issueFiles.length === 0 && mappingFiles.length === 0) {\n return { success: true, migratedCount: 0 };\n }\n\n // Step 1: Backup to .tbd/backups/\n const backupsDir = join(baseDir, TBD_DIR, 'backups');\n await mkdir(backupsDir, { recursive: true });\n\n const timestamp = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 19);\n const backupPath = join(backupsDir, `data-sync-backup-${timestamp}`);\n\n await cp(wrongPath, backupPath, { recursive: true });\n\n // Step 2: Copy issues and mappings to worktree\n const correctIssuesPath = join(correctPath, 'issues');\n const correctMappingsPath = join(correctPath, 'mappings');\n\n await mkdir(correctIssuesPath, { recursive: true });\n await mkdir(correctMappingsPath, { recursive: true });\n\n for (const file of issueFiles) {\n await cp(join(wrongIssuesPath, file), join(correctIssuesPath, file));\n }\n\n for (const file of mappingFiles) {\n await cp(join(wrongMappingsPath, file), join(correctMappingsPath, file));\n }\n\n // Step 3: Commit in worktree (if there are changes)\n // Use --no-verify to bypass parent repo hooks (lefthook, husky, etc.)\n const totalFiles = issueFiles.length + mappingFiles.length;\n await git('-C', worktreePath, 'add', '-A');\n\n // Check if there are staged changes before committing\n const hasChanges = await git('-C', worktreePath, 'diff', '--cached', '--quiet')\n .then(() => false)\n .catch(() => true);\n\n if (hasChanges) {\n await git(\n '-C',\n worktreePath,\n 'commit',\n '--no-verify',\n '-m',\n `tbd: migrate ${totalFiles} file(s) from incorrect location`,\n );\n }\n // If no changes, files were already migrated - that's fine\n\n // Step 4: Optionally remove wrong location data\n if (removeSource) {\n // Remove issue and mapping files, but keep directory structure\n for (const file of issueFiles) {\n await rm(join(wrongIssuesPath, file));\n }\n for (const file of mappingFiles) {\n await rm(join(wrongMappingsPath, file));\n }\n }\n\n return {\n success: true,\n migratedCount: totalFiles,\n backupPath,\n };\n } catch (error) {\n return {\n success: false,\n migratedCount: 0,\n error: error instanceof Error ? error.message : String(error),\n };\n }\n}\n","/\n `tbd init` - Initialize tbd in a repository.\n \n See: tbd-design.md §4.3 Initialization\n /\n\nimport { Command } from 'commander';\nimport { mkdir, stat } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { ensureGitignorePatterns } from '../../utils/gitignore-utils.js';\nimport { CLIError, ValidationError } from '../lib/errors.js';\nimport { isValidPrefix, isRecommendedPrefix } from '../lib/prefix-detection.js';\nimport { VERSION } from '../lib/version.js';\nimport { initConfig } from '../../file/config.js';\nimport {\n TBD_DIR,\n WORKTREE_DIR_NAME,\n DATA_SYNC_DIR_NAME,\n SYNC_BRANCH,\n TBD_SHORTCUTS_SYSTEM,\n TBD_SHORTCUTS_STANDARD,\n TBD_GUIDELINES_DIR,\n TBD_TEMPLATES_DIR,\n TBD_DOCS_DIR,\n} from '../../lib/paths.js';\nimport {\n initWorktree,\n checkGitVersion,\n checkWorktreeHealth,\n MIN_GIT_VERSION,\n} from '../../file/git.js';\n\ninterface InitOptions {\n prefix?: string;\n force?: boolean;\n syncBranch?: string;\n remote?: string;\n}\n\nclass InitHandler extends BaseCommand {\n async run(options: InitOptions): Promise<void> {\n const cwd = process.cwd();\n\n // Check if already initialized\n try {\n await stat(join(cwd, TBD_DIR));\n throw new CLIError('tbd is already initialized in this directory');\n } catch (error) {\n // Not initialized - continue (unless it's our CLIError)\n if (error instanceof CLIError) throw error;\n }\n\n // Validate prefix is provided\n if (!options.prefix) {\n throw new ValidationError(\n 'The --prefix option is required\\n\\n' +\n 'Usage: tbd init --prefix=<name>\\n\\n' +\n 'The prefix is used for display IDs (e.g., proj-a7k2, myapp-b3m9)\\n' +\n 'Choose a short 2-8 letter prefix for your project (e.g., tbd, myp, proj).\\n\\n' +\n 'For full setup with integrations: tbd setup --auto --prefix=<name>',\n );\n }\n\n const prefix = options.prefix;\n\n // Hard validation: always enforced\n if (!isValidPrefix(prefix)) {\n throw new ValidationError(\n 'Invalid prefix format.\\n' +\n 'Prefix must be 1-20 lowercase characters:\\n' +\n ' - Must start with a letter (a-z)\\n' +\n ' - Must end with alphanumeric (a-z, 0-9)\\n' +\n ' - Middle characters can include dots (.) and underscores (_)\\n' +\n ' - No dashes allowed (breaks ID syntax)\\n\\n' +\n 'Example:\\n' +\n ' tbd init --prefix=tbd',\n );\n }\n\n // Soft validation: recommended format (2-8 alphabetic)\n if (!isRecommendedPrefix(prefix) && !options.force) {\n throw new ValidationError(\n `Prefix \"${prefix}\" is not recommended.\\n` +\n 'Recommended prefixes are 2-8 alphabetic characters (e.g., \"tbd\", \"myp\", \"proj\").\\n\\n' +\n 'If you really want to use this prefix, add --force to override.\\n\\n' +\n 'Example:\\n' +\n ` tbd init --prefix=${prefix} --force`,\n );\n }\n\n if (this.checkDryRun('Would initialize tbd repository', options)) {\n return;\n }\n\n await this.execute(async () => {\n // 1. Create .tbd/ directory with config.yml\n // Note: options.prefix is validated to be non-null above\n await initConfig(cwd, VERSION, options.prefix!);\n this.output.debug(`Created ${TBD_DIR}/config.yml with prefix '${options.prefix}'`);\n\n // 2. Create .tbd/.gitignore (idempotent)\n // Per spec: Must ignore docs/, data-sync-worktree/, and data-sync/\n await ensureGitignorePatterns(join(cwd, TBD_DIR, '.gitignore'), [\n '# Installed documentation (regenerated on setup)',\n 'docs/',\n '',\n '# Hidden worktree for tbd-sync branch',\n `${WORKTREE_DIR_NAME}/`,\n '',\n '# Data sync directory (only exists in worktree)',\n `${DATA_SYNC_DIR_NAME}/`,\n '',\n '# Local state',\n 'state.yml',\n '',\n '# Migration backups (local only, not synced)',\n 'backups/',\n '',\n '# Temporary files',\n '.tmp',\n '.temp',\n ]);\n this.output.debug(`Created ${TBD_DIR}/.gitignore`);\n\n // 3. Create docs directories for shortcuts, guidelines, and templates\n await mkdir(join(cwd, TBD_SHORTCUTS_SYSTEM), { recursive: true });\n await mkdir(join(cwd, TBD_SHORTCUTS_STANDARD), { recursive: true });\n await mkdir(join(cwd, TBD_GUIDELINES_DIR), { recursive: true });\n await mkdir(join(cwd, TBD_TEMPLATES_DIR), { recursive: true });\n this.output.debug(`Created ${TBD_DOCS_DIR}/ directories`);\n\n // 4. Initialize the hidden worktree for tbd-sync branch\n // This creates .tbd/data-sync-worktree/ with the sync branch checkout\n const remote = options.remote ?? 'origin';\n const syncBranch = options.syncBranch ?? SYNC_BRANCH;\n\n // Check Git version before attempting worktree creation\n // Git 2.42+ is required for --orphan worktree support\n try {\n const { version, supported } = await checkGitVersion();\n if (!supported) {\n const versionStr = `${version.major}.${version.minor}.${version.patch}`;\n throw new CLIError(\n `Git ${versionStr} detected. Git ${MIN_GIT_VERSION}+ is required for tbd.\\n\\n` +\n `tbd requires Git 2.42+ for orphan worktree support.\\n` +\n `Please upgrade Git: https://git-scm.com/downloads`,\n );\n }\n this.output.debug(`Git version ${version.major}.${version.minor}.${version.patch} OK`);\n } catch (error) {\n // If git is not installed at all, let worktree init handle it\n if (error instanceof CLIError) throw error;\n this.output.debug(`Git version check skipped: ${(error as Error).message}`);\n }\n\n const worktreeResult = await initWorktree(cwd, remote, syncBranch);\n\n if (worktreeResult.success) {\n if (worktreeResult.created) {\n this.output.debug(`Created hidden worktree at ${TBD_DIR}/${WORKTREE_DIR_NAME}/`);\n } else {\n this.output.debug(`Worktree already exists at ${TBD_DIR}/${WORKTREE_DIR_NAME}/`);\n }\n\n // Verify worktree health after creation (prevents silent failures)\n const health = await checkWorktreeHealth(cwd);\n if (!health.valid) {\n this.output.warn(\n `Worktree created but failed verification (status: ${health.status}). ` +\n `Run 'tbd doctor' to diagnose.`,\n );\n }\n } else {\n // Worktree creation failed - this is ok if not in a git repo\n // Log warning but don't fail init (supports non-git usage)\n this.output.debug(`Note: Worktree not created (${worktreeResult.error})`);\n }\n }, 'Failed to initialize tbd');\n\n this.output.data({ initialized: true, version: VERSION, prefix: options.prefix }, () => {\n this.output.success(`Initialized tbd repository (prefix: ${options.prefix})`);\n // Only show next steps if not in quiet mode\n if (!this.output.isQuiet()) {\n console.log('');\n console.log('Next steps:');\n console.log(' git add .tbd/ && git commit -m \"Initialize tbd\"');\n console.log(' tbd setup --auto # Optional: configure agent integrations');\n }\n });\n }\n}\n\nexport const initCommand = new Command('init')\n .description('Initialize tbd in a git repository')\n .option('--prefix <name>', 'Project prefix for display IDs (2-8 alphabetic recommended)')\n .option('--force', 'Allow non-recommended prefix format')\n .option('--sync-branch <name>', 'Sync branch name (default: tbd-sync)')\n .option('--remote <name>', 'Remote name (default: origin)')\n .action(async (options, command) => {\n const handler = new InitHandler(command);\n await handler.run(options);\n });\n","/\n ID generation and validation utilities.\n \n The system uses dual IDs for usability:\n * - Internal ID: is-{ulid} - ULID-based (26 lowercase chars), stored in files\n * - External ID: {prefix}-{short} - 4-5 base36 chars for CLI display/input\n \n For Beads compatibility, bd- prefix is accepted on input for external IDs.\n \n See: tbd-design.md §2.5 ID Generation\n /\n\nimport { ulid } from 'ulid';\nimport { randomBytes } from 'node:crypto';\n\n// =============================================================================\n// Branded Types for Type-Safe ID Handling\n// =============================================================================\n\n/\n Branded type for internal issue IDs (is-{ulid} format).\n \n Internal IDs are stored in files and used as the canonical identifier.\n * Format: is-{26 lowercase alphanumeric chars}\n * Example: is-01hx5zzkbkactav9wevgemmvrz\n \n Use this type when:\n * - Reading/writing issue files\n * - Storing parent_id, dependencies, child_order_hints\n * - Passing IDs between internal functions\n /\ndeclare const InternalIssueIdBrand: unique symbol;\nexport type InternalIssueId = string & { [InternalIssueIdBrand]: never };\n\n/\n Branded type for display issue IDs ({prefix}-{short} format).\n \n Display IDs are shown to users and accepted as CLI input.\n * Format: {prefix}-{short} where short is typically 4 base36 chars\n * Example: tbd-a7k2, bd-100\n \n Use this type when:\n * - Formatting output for users\n * - Accepting user input (before resolution)\n * - Building tree views for display\n /\ndeclare const DisplayIssueIdBrand: unique symbol;\nexport type DisplayIssueId = string & { [DisplayIssueIdBrand]: never };\n\n/\n Cast a string to InternalIssueId after validation.\n * Use this when you've validated that a string is a valid internal ID.\n /\nexport function asInternalId(id: string): InternalIssueId {\n return id as InternalIssueId;\n}\n\n/\n Cast a string to DisplayIssueId.\n * Use this when formatting an ID for display.\n /\nexport function asDisplayId(id: string): DisplayIssueId {\n return id as DisplayIssueId;\n}\n\n/\n Prefix for internal IDs (ULID-based).\n * All internal IDs are formatted as: {INTERNAL_ID_PREFIX}-{ulid}\n /\nexport const INTERNAL_ID_PREFIX = 'is';\n\n/\n Length of internal ID prefix including the hyphen (e.g., \"is-\" = 3).\n /\nexport const INTERNAL_ID_PREFIX_LENGTH = INTERNAL_ID_PREFIX.length + 1;\n\n/\n Construct an internal ID from a ULID.\n \n @param ulidValue - The ULID (26 chars)\n * @returns Internal ID in format {prefix}-{ulid}\n /\nexport function makeInternalId(ulidValue: string): InternalIssueId {\n return `${INTERNAL_ID_PREFIX}-${ulidValue.toLowerCase()}` as InternalIssueId;\n}\n\n/\n Generate a unique internal ID using ULID.\n * Format: is-{ulid} (26 lowercase alphanumeric chars)\n * Example: is-01hx5zzkbkactav9wevgemmvrz\n \n ULID provides:\n * - Time-ordered sorting (48-bit timestamp)\n * - 80-bit randomness (no collisions)\n * - Lexicographic sort = chronological order\n /\nexport function generateInternalId(): InternalIssueId {\n return makeInternalId(ulid());\n}\n\n/\n Generate a short ID for external display.\n * Format: base36 characters (a-z, 0-9)\n * Example: a7k2\n \n @param length - Number of characters (default 4)\n /\nexport function generateShortId(length = 4): string {\n const chars = '0123456789abcdefghijklmnopqrstuvwxyz';\n let result = '';\n const bytes = randomBytes(length);\n for (let i = 0; i < length; i++) {\n result += chars[bytes[i]! % 36];\n }\n return result;\n}\n\n// Regex pattern for validating internal IDs - built from prefix constant\nconst INTERNAL_ID_PATTERN = new RegExp(`^${INTERNAL_ID_PREFIX}-[0-9a-z]{26}$`);\n\n// Expected length of a full internal ID (prefix + hyphen + 26-char ULID)\nconst INTERNAL_ID_LENGTH = INTERNAL_ID_PREFIX_LENGTH + 26;\n\n/\n Validate an internal issue ID matches the ULID format.\n * Format: {prefix}-{26 lowercase alphanumeric chars}\n /\nexport function validateIssueId(id: string): boolean {\n return INTERNAL_ID_PATTERN.test(id);\n}\n\n/\n Validate a short/external ID format.\n * Format: 1+ base36 characters (typically 4 for new IDs, but imports may preserve longer IDs).\n /\nexport function validateShortId(id: string): boolean {\n return /^[0-9a-z]+$/.test(id);\n}\n\n/\n Check if an input looks like an internal ID (ULID-based).\n /\nexport function isInternalId(input: string): boolean {\n const lower = input.toLowerCase();\n // Check if it starts with the internal prefix and has correct length\n const prefixWithHyphen = `${INTERNAL_ID_PREFIX}-`;\n if (lower.startsWith(prefixWithHyphen) && lower.length === INTERNAL_ID_LENGTH) {\n return INTERNAL_ID_PATTERN.test(lower);\n }\n return false;\n}\n\n/\n Check if an input looks like a short/external ID.\n * Returns true for IDs like \"a7k2\", \"bd-a7k2\", \"100\", \"tbd-100\".\n * Short IDs are 16 characters or less (ULIDs are 26 characters).\n /\nexport function isShortId(input: string): boolean {\n const lower = input.toLowerCase();\n // Strip prefix if present\n const stripped = lower.replace(/^[a-z]+-/, '');\n // Must be 1-16 alphanumeric chars (short IDs, not ULIDs which are 26 chars)\n return /^[0-9a-z]+$/.test(stripped) && stripped.length >= 1 && stripped.length <= 16;\n}\n\n/\n Extract the short ID portion from an external ID.\n * Examples:\n * \"tbd-100\" -> \"100\"\n * \"bd-a7k2\" -> \"a7k2\"\n * \"a7k2\" -> \"a7k2\"\n * \"100\" -> \"100\"\n /\nexport function extractShortId(externalId: string): string {\n return externalId.toLowerCase().replace(/^[a-z]+-/, '');\n}\n\n/\n Extract the prefix portion from an external ID.\n * Returns the prefix (letters before the hyphen) or null if no prefix found.\n * Examples:\n * \"tbd-100\" -> \"tbd\"\n * \"bd-a7k2\" -> \"bd\"\n * \"TBD-100\" -> \"tbd\" (normalized to lowercase)\n * \"a7k2\" -> null (no prefix)\n * \"100\" -> null (no prefix)\n /\nexport function extractPrefix(externalId: string): string \| null {\n const match = /^([a-zA-Z]+)-/.exec(externalId);\n return match?.[1]?.toLowerCase() ?? null;\n}\n\n/\n Extract the ULID portion from an internal ID.\n \n Internal IDs have the format: {prefix}-{ulid}\n * This function strips any prefix to return just the ULID.\n \n Examples:\n * \"is-01hx5zzkbkactav9wevgemmvrz\" -> \"01hx5zzkbkactav9wevgemmvrz\"\n * \"01hx5zzkbkactav9wevgemmvrz\" -> \"01hx5zzkbkactav9wevgemmvrz\" (no prefix)\n \n @param internalId - The internal ID (with or without prefix)\n * @returns The ULID portion without any prefix\n /\nexport function extractUlidFromInternalId(internalId: string): string {\n // Strip any prefix in format {letters}- (e.g., \"is-\", \"bd-\")\n return internalId.toLowerCase().replace(/^[a-z]+-/, '');\n}\n\n/* Prefix used in Beads for compatibility /\nconst BEADS_COMPAT_PREFIX = 'bd';\n\n/\n Normalize an internal issue ID.\n \n This function expects a full internal ID ({prefix}-{ulid}).\n * If given a short ID, it won't be able to resolve it without\n * access to the ID mapping.\n \n Handles:\n * - Uppercase (converts to lowercase)\n * - Ensures internal ID prefix\n * - Beads compatibility (bd- prefix)\n /\nexport function normalizeIssueId(input: string): string {\n const lower = input.toLowerCase();\n const internalPrefixWithHyphen = `${INTERNAL_ID_PREFIX}-`;\n const beadsPrefixWithHyphen = `${BEADS_COMPAT_PREFIX}-`;\n\n // If already a valid internal ID, return as-is\n if (validateIssueId(lower)) {\n return lower;\n }\n\n // If it starts with internal prefix but wrong length, might be corrupted\n if (lower.startsWith(internalPrefixWithHyphen)) {\n return lower; // Return as-is, let validation fail later\n }\n\n // If it starts with bd- (Beads compat), convert prefix\n if (lower.startsWith(beadsPrefixWithHyphen)) {\n const rest = lower.slice(beadsPrefixWithHyphen.length);\n if (rest.length === 26) {\n return makeInternalId(rest);\n }\n // Short ID - can't resolve without mapping\n return lower;\n }\n\n // Bare ID without prefix\n if (lower.length === 26 && /^[0-9a-z]{26}$/.test(lower)) {\n return makeInternalId(lower);\n }\n\n // Can't normalize - return as-is\n return lower;\n}\n\nimport type { IdMapping } from '../file/id-mapping.js';\n\n/\n Format an internal ID for display with the configured prefix.\n \n Uses the short ID (4 chars) from the mapping.\n * Throws an error if the mapping is missing or doesn't contain the ID.\n \n IMPORTANT: All user-facing output MUST use short IDs, never internal ULIDs.\n * If you see a ULID in user output, it's a bug.\n \n @param internalId - The internal ID (is-{ulid})\n * @param mapping - ID mapping for short ID lookup (required)\n * @param prefix - Display prefix (should come from config.display.id_prefix; defaults to 'tbd' as fallback)\n * @throws Error if mapping is missing or ID not found in mapping\n /\nexport function formatDisplayId(\n internalId: InternalIssueId \| string,\n mapping: IdMapping,\n prefix = 'tbd',\n): DisplayIssueId {\n // Extract the ULID portion\n const ulidPart = extractUlidFromInternalId(internalId);\n\n // Get short ID from mapping\n const shortId = mapping.ulidToShort.get(ulidPart);\n if (!shortId) {\n throw new Error(\n `No short ID mapping found for internal ID: ${internalId}. ` +\n `This is a bug - all issues must have a short ID mapping.`,\n );\n }\n\n return `${prefix}-${shortId}` as DisplayIssueId;\n}\n\n/\n Format an ID for debug output, showing both public and internal IDs.\n \n @param internalId - The internal ID (is-{ulid})\n * @param mapping - ID mapping for short ID lookup\n * @param prefix - Display prefix (should come from config.display.id_prefix; defaults to 'tbd' as fallback)\n /\nexport function formatDebugId(\n internalId: InternalIssueId \| string,\n mapping: IdMapping,\n prefix = 'tbd',\n): string {\n const displayId = formatDisplayId(internalId, mapping, prefix);\n return `${displayId} (${internalId})`;\n}\n","/\n Storage layer for issue files.\n \n Provides atomic file operations and issue CRUD operations.\n * All operations work on the hidden worktree at .tbd/data-sync/issues/.\n \n See: tbd-design.md §3.2 Storage Layer\n /\n\nimport { readFile, unlink, readdir } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport { writeFile } from 'atomically';\n\nimport type { Issue } from '../lib/types.js';\nimport { parseIssue, serializeIssue } from './parser.js';\n\n/\n Get the path to an issue file.\n /\nfunction getIssuePath(baseDir: string, id: string): string {\n return join(baseDir, 'issues', `${id}.md`);\n}\n\n/\n Read an issue from the worktree.\n * @throws If the issue file doesn't exist or is invalid.\n /\nexport async function readIssue(baseDir: string, id: string): Promise<Issue> {\n const filePath = getIssuePath(baseDir, id);\n const content = await readFile(filePath, 'utf-8');\n return parseIssue(content);\n}\n\n/\n Write an issue to the worktree.\n * Uses atomic write to prevent corruption.\n /\nexport async function writeIssue(baseDir: string, issue: Issue): Promise<void> {\n const filePath = getIssuePath(baseDir, issue.id);\n const content = serializeIssue(issue);\n await writeFile(filePath, content);\n}\n\n/\n List all issues in the worktree.\n * Returns empty array if issues directory doesn't exist.\n \n Uses parallel file reading for better performance with many issues.\n /\nexport async function listIssues(baseDir: string): Promise<Issue[]> {\n const issuesDir = join(baseDir, 'issues');\n\n let files: string[];\n try {\n files = await readdir(issuesDir);\n } catch {\n // Directory doesn't exist - return empty\n return [];\n }\n\n // Filter to only .md files\n const mdFiles = files.filter((f) => f.endsWith('.md'));\n\n // Read all files in parallel for better I/O performance\n const fileContents = await Promise.all(\n mdFiles.map(async (file) => {\n const filePath = join(issuesDir, file);\n try {\n const content = await readFile(filePath, 'utf-8');\n return { file, content };\n } catch {\n return { file, content: null };\n }\n }),\n );\n\n // Parse issues (filter out failed reads)\n const issues: Issue[] = [];\n for (const { file, content } of fileContents) {\n if (content === null) continue;\n try {\n const issue = parseIssue(content);\n issues.push(issue);\n } catch (error) {\n // Skip invalid files with a warning\n console.warn(`Skipping invalid issue file: ${file}`, error);\n }\n }\n\n return issues;\n}\n\n/\n Delete an issue from the worktree.\n * Does not throw if issue doesn't exist.\n /\nexport async function deleteIssue(baseDir: string, id: string): Promise<void> {\n const filePath = getIssuePath(baseDir, id);\n try {\n await unlink(filePath);\n } catch (error) {\n // Ignore ENOENT (file doesn't exist)\n if ((error as NodeJS.ErrnoException).code !== 'ENOENT') {\n throw error;\n }\n }\n}\n","/\n Natural sort utilities.\n \n Provides alphanumeric sorting where numeric portions are sorted numerically.\n * Similar to `sort -V` (version sort) or `sort -n` for numbers.\n \n Examples:\n * [\"1\", \"2\", \"9\", \"10\", \"11\"] instead of [\"1\", \"10\", \"11\", \"2\", \"9\"]\n * [\"a1\", \"a2\", \"a10\"] instead of [\"a1\", \"a10\", \"a2\"]\n * [\"file1.txt\", \"file2.txt\", \"file10.txt\"] instead of [\"file1.txt\", \"file10.txt\", \"file2.txt\"]\n /\n\n/\n Split a string into alternating runs of digits and non-digits.\n * @param str - The string to split\n * @returns Array of [isNumeric, value] tuples\n /\nfunction splitIntoChunks(str: string): [boolean, string][] {\n const chunks: [boolean, string][] = [];\n let current = '';\n let currentIsNumeric: boolean \| null = null;\n\n for (const char of str) {\n const isDigit = char >= '0' && char <= '9';\n\n if (currentIsNumeric === null) {\n // First character\n currentIsNumeric = isDigit;\n current = char;\n } else if (isDigit === currentIsNumeric) {\n // Same type, continue accumulating\n current += char;\n } else {\n // Type changed, push current chunk and start new one\n chunks.push([currentIsNumeric, current]);\n currentIsNumeric = isDigit;\n current = char;\n }\n }\n\n // Push final chunk\n if (current) {\n chunks.push([currentIsNumeric!, current]);\n }\n\n return chunks;\n}\n\n/\n Compare two strings using natural (alphanumeric) ordering.\n \n Numeric portions are compared numerically, non-numeric portions are\n * compared lexicographically (case-insensitive). Numbers sort before letters\n * when they appear at the same position in mixed comparisons, matching\n * the behavior of `sort -V` (version sort).\n \n @param a - First string\n * @param b - Second string\n * @returns Negative if a < b, positive if a > b, zero if equal\n /\nexport function naturalCompare(a: string, b: string): number {\n // Handle empty strings\n if (!a && !b) return 0;\n if (!a) return -1;\n if (!b) return 1;\n\n const chunksA = splitIntoChunks(a);\n const chunksB = splitIntoChunks(b);\n\n const minLen = Math.min(chunksA.length, chunksB.length);\n\n for (let i = 0; i < minLen; i++) {\n const [isNumericA, valueA] = chunksA[i]!;\n const [isNumericB, valueB] = chunksB[i]!;\n\n if (isNumericA && isNumericB) {\n // Both are numeric - compare as numbers\n const numA = parseInt(valueA, 10);\n const numB = parseInt(valueB, 10);\n if (numA !== numB) {\n return numA - numB;\n }\n // If numerically equal but different strings (e.g., \"01\" vs \"1\"),\n // prefer shorter (fewer leading zeros)\n if (valueA.length !== valueB.length) {\n return valueA.length - valueB.length;\n }\n } else if (!isNumericA && !isNumericB) {\n // Both are non-numeric - compare lexicographically (case-insensitive)\n const lowerA = valueA.toLowerCase();\n const lowerB = valueB.toLowerCase();\n if (lowerA !== lowerB) {\n return lowerA.localeCompare(lowerB);\n }\n // Same when lowercased - they're equal for sorting purposes\n } else {\n // Mixed: numeric comes before non-numeric\n // (so \"1\" comes before \"a\" at the same position)\n // This matches `sort -V` behavior\n return isNumericA ? -1 : 1;\n }\n }\n\n // All compared chunks are equal, shorter string comes first\n return chunksA.length - chunksB.length;\n}\n\n/\n Sort an array of strings using natural (alphanumeric) ordering.\n \n @param arr - Array to sort\n * @returns New sorted array (does not mutate original)\n /\nexport function naturalSort(arr: readonly string[]): string[] {\n return [...arr].sort(naturalCompare);\n}\n\n/\n Sort an array of objects by a string key using natural ordering.\n \n @param arr - Array to sort\n * @param keyFn - Function to extract the sort key from each element\n * @returns New sorted array (does not mutate original)\n /\nexport function naturalSortBy<T>(arr: readonly T[], keyFn: (item: T) => string): T[] {\n return [...arr].sort((a, b) => naturalCompare(keyFn(a), keyFn(b)));\n}\n","/\n ID mapping management for short public IDs.\n \n Maps 4-char base36 short IDs to 26-char ULIDs.\n * Stored in .tbd/data-sync/mappings/ids.yml\n \n See: tbd-design.md §2.5 ID Generation\n /\n\nimport { readFile, mkdir } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport { writeFile } from 'atomically';\n\nimport { parseYamlWithConflictDetection, stringifyYaml } from '../utils/yaml-utils.js';\n\nimport {\n generateShortId,\n extractUlidFromInternalId,\n makeInternalId,\n isInternalId,\n extractShortId,\n asInternalId,\n type InternalIssueId,\n} from '../lib/ids.js';\nimport { naturalSort } from '../lib/sort.js';\nimport { IdMappingYamlSchema } from '../lib/schemas.js';\n\n/\n ID mapping from short ID to ULID.\n * Format in ids.yml:\n * a7k2: 01hx5zzkbkactav9wevgemmvrz\n * b3m9: 01hx5zzkbkbctav9wevgemmvrz\n /\nexport interface IdMapping {\n shortToUlid: Map<string, string>;\n ulidToShort: Map<string, string>;\n}\n\n/\n Get the path to the ids.yml mapping file.\n /\nfunction getMappingPath(baseDir: string): string {\n return join(baseDir, 'mappings', 'ids.yml');\n}\n\n/\n Load the ID mapping from disk.\n * Returns empty mapping if file doesn't exist.\n /\nexport async function loadIdMapping(baseDir: string): Promise<IdMapping> {\n const filePath = getMappingPath(baseDir);\n\n let content: string;\n try {\n content = await readFile(filePath, 'utf-8');\n } catch {\n // File doesn't exist - return empty mapping\n return {\n shortToUlid: new Map(),\n ulidToShort: new Map(),\n };\n }\n\n // Parse with conflict detection - provides helpful error if file has merge markers\n const rawData = parseYamlWithConflictDetection<unknown>(content, filePath) ?? {};\n\n // Validate with Zod schema - ensures all keys are valid short IDs and values are ULIDs\n const parseResult = IdMappingYamlSchema.safeParse(rawData);\n if (!parseResult.success) {\n throw new Error(`Invalid ID mapping format in ${filePath}: ${parseResult.error.message}`);\n }\n const data = parseResult.data;\n\n const shortToUlid = new Map<string, string>();\n const ulidToShort = new Map<string, string>();\n\n for (const [shortId, ulid] of Object.entries(data)) {\n shortToUlid.set(shortId, ulid);\n ulidToShort.set(ulid, shortId);\n }\n\n return { shortToUlid, ulidToShort };\n}\n\n/\n Save the ID mapping to disk.\n /\nexport async function saveIdMapping(baseDir: string, mapping: IdMapping): Promise<void> {\n const filePath = getMappingPath(baseDir);\n\n // Ensure directory exists\n await mkdir(dirname(filePath), { recursive: true });\n\n // Convert Map to sorted object for deterministic output\n // Use natural sort so \"1\", \"2\", \"10\" sorts correctly (not \"1\", \"10\", \"2\")\n const data: Record<string, string> = {};\n const sortedKeys = naturalSort(Array.from(mapping.shortToUlid.keys()));\n for (const key of sortedKeys) {\n data[key] = mapping.shortToUlid.get(key)!;\n }\n\n const content = stringifyYaml(data);\n await writeFile(filePath, content);\n}\n\n/\n Calculate the optimal short ID length based on existing ID count.\n \n At 50K issues, switches from 4-char to 5-char IDs to keep\n * collision probability low (~3% per attempt with 4 chars at 50K).\n \n With 10 retries per length, actual failure probability is astronomically low.\n /\nexport function calculateOptimalLength(existingCount: number): number {\n return existingCount < 50_000 ? 4 : 5;\n}\n\n/\n Generate a unique short ID that doesn't collide with existing ones.\n \n Calculates optimal length (4 or 5 chars) based on existing ID count,\n * then retries with the next length if collisions occur.\n \n @returns The new short ID\n * @throws If unable to generate a unique ID after max attempts\n /\nexport function generateUniqueShortId(mapping: IdMapping): string {\n const ATTEMPTS_PER_LENGTH = 10;\n const existingCount = mapping.shortToUlid.size;\n const optimalLength = calculateOptimalLength(existingCount);\n\n // Try optimal length first, then fall back to longer if needed\n for (const length of [optimalLength, optimalLength + 1]) {\n for (let attempt = 0; attempt < ATTEMPTS_PER_LENGTH; attempt++) {\n const shortId = generateShortId(length);\n if (!mapping.shortToUlid.has(shortId)) {\n return shortId;\n }\n }\n }\n\n throw new Error(\n `Failed to generate unique short ID after 20 attempts with ${existingCount} existing IDs. ` +\n `This should be extremely rare - please report if you see this error.`,\n );\n}\n\n/\n Register a new ID mapping.\n * @param ulid - The ULID (without is- prefix)\n * @param shortId - The short ID (4 chars)\n /\nexport function addIdMapping(mapping: IdMapping, ulid: string, shortId: string): void {\n mapping.shortToUlid.set(shortId, ulid);\n mapping.ulidToShort.set(ulid, shortId);\n}\n\n/\n Get the short ID for a ULID.\n * @param ulid - The ULID (without is- prefix)\n * @returns The short ID, or undefined if not found\n /\nexport function getShortId(mapping: IdMapping, ulid: string): string \| undefined {\n return mapping.ulidToShort.get(ulid);\n}\n\n/\n Get the ULID for a short ID.\n * @param shortId - The short ID\n * @returns The ULID (without is- prefix), or undefined if not found\n /\nexport function getUlid(mapping: IdMapping, shortId: string): string \| undefined {\n return mapping.shortToUlid.get(shortId);\n}\n\n/\n Check if a short ID exists in the mapping.\n /\nexport function hasShortId(mapping: IdMapping, shortId: string): boolean {\n return mapping.shortToUlid.has(shortId);\n}\n\n/\n Create a short ID mapping for a new internal ID.\n * Generates a unique short ID and registers it in the mapping.\n \n @param internalId - The internal ID (is-{ulid})\n * @param mapping - The ID mapping to update\n * @returns The generated short ID\n /\nexport function createShortIdMapping(internalId: string, mapping: IdMapping): string {\n // Extract ULID from internal ID (remove prefix)\n const ulid = extractUlidFromInternalId(internalId);\n\n // Check if already mapped\n const existing = mapping.ulidToShort.get(ulid);\n if (existing) {\n return existing;\n }\n\n // Generate unique short ID\n const shortId = generateUniqueShortId(mapping);\n\n // Register mapping\n addIdMapping(mapping, ulid, shortId);\n\n return shortId;\n}\n\n/\n Resolve any ID input to an internal ID ({prefix}-{ulid}).\n \n Handles:\n * - Internal IDs: {prefix}-{ulid} -> {prefix}-{ulid}\n * - Short IDs: a7k2 -> {prefix}-{ulid from mapping}\n * - Prefixed short IDs: bd-a7k2 -> {prefix}-{ulid from mapping}\n \n @param input - The ID input (short ID, prefixed short ID, or internal ID)\n * @param mapping - The ID mapping for short ID resolution\n * @returns The internal ID ({prefix}-{ulid})\n * @throws If the short ID is not found in the mapping\n /\nexport function resolveToInternalId(input: string, mapping: IdMapping): InternalIssueId {\n const lower = input.toLowerCase();\n\n // If it's already an internal ID, return it\n if (isInternalId(lower)) {\n return asInternalId(lower);\n }\n\n // Extract the short ID portion (strips any prefix like \"bd-\" or \"is-\")\n const shortId = extractShortId(lower);\n\n // If it's a full ULID (26 chars), it might be a bare internal ID\n if (shortId.length === 26 && /^[0-9a-z]{26}$/.test(shortId)) {\n return makeInternalId(shortId);\n }\n\n // Must be a short ID - look it up in the mapping\n const ulid = mapping.shortToUlid.get(shortId);\n if (!ulid) {\n throw new Error(`Unknown issue ID: ${input}. ` + `Short ID \"${shortId}\" not found in mapping.`);\n }\n\n return makeInternalId(ulid);\n}\n\n/\n Parse an ID mapping from raw YAML content.\n * Used for loading mappings from git show output during conflict resolution.\n \n @throws MergeConflictError if content contains merge conflict markers\n /\nexport function parseIdMappingFromYaml(content: string): IdMapping {\n // Parse with conflict detection - throws MergeConflictError if markers found\n const rawData = parseYamlWithConflictDetection<unknown>(content) ?? {};\n\n // Validate with Zod schema\n const parseResult = IdMappingYamlSchema.safeParse(rawData);\n if (!parseResult.success) {\n throw new Error(`Invalid ID mapping format: ${parseResult.error.message}`);\n }\n const data = parseResult.data;\n\n const shortToUlid = new Map<string, string>();\n const ulidToShort = new Map<string, string>();\n\n for (const [shortId, ulid] of Object.entries(data)) {\n shortToUlid.set(shortId, ulid);\n ulidToShort.set(ulid, shortId);\n }\n\n return { shortToUlid, ulidToShort };\n}\n\n/\n Merge two ID mappings by combining all entries from both.\n * ID mappings are always additive (new IDs are only added, never removed),\n * so merging simply unions all key-value pairs.\n \n If the same short ID maps to different ULIDs in each mapping (a conflict),\n * the local mapping takes precedence (caller should log a warning).\n \n @param local - The local ID mapping\n * @param remote - The remote ID mapping\n * @returns Merged mapping with all entries from both\n /\nexport function mergeIdMappings(local: IdMapping, remote: IdMapping): IdMapping {\n const merged: IdMapping = {\n shortToUlid: new Map(local.shortToUlid),\n ulidToShort: new Map(local.ulidToShort),\n };\n\n // Add all remote entries that don't conflict\n for (const [shortId, ulid] of remote.shortToUlid) {\n if (!merged.shortToUlid.has(shortId)) {\n merged.shortToUlid.set(shortId, ulid);\n merged.ulidToShort.set(ulid, shortId);\n }\n // If shortId already exists with different ulid, keep local (conflict resolution)\n }\n\n // Also check for ULIDs that exist in remote but not in local\n // (different short ID for same ULID - shouldn't happen but handle gracefully)\n for (const [ulid, shortId] of remote.ulidToShort) {\n if (!merged.ulidToShort.has(ulid) && !merged.shortToUlid.has(shortId)) {\n merged.shortToUlid.set(shortId, ulid);\n merged.ulidToShort.set(ulid, shortId);\n }\n }\n\n return merged;\n}\n","/\n Priority formatting and parsing utilities.\n \n Priority values range from 0 (critical) to 4 (backlog).\n * Display format uses \"P\" prefix: P0, P1, P2, P3, P4.\n /\n\nimport type { createColors } from '../cli/lib/output.js';\n\n/\n Valid priority values.\n /\nexport const MIN_PRIORITY = 0;\nexport const MAX_PRIORITY = 4;\n\n/\n Format a priority number for display.\n * Always uses \"P\" prefix format.\n \n @example formatPriority(0) → \"P0\"\n * @example formatPriority(2) → \"P2\"\n /\nexport function formatPriority(priority: number): string {\n return `P${priority}`;\n}\n\n/\n Parse a priority string to a number.\n * Accepts both numeric (\"1\") and prefixed (\"P1\") formats.\n * Case-insensitive for prefixed format.\n \n @example parsePriority(\"P1\") → 1\n * @example parsePriority(\"p0\") → 0\n * @example parsePriority(\"2\") → 2\n * @example parsePriority(\"invalid\") → undefined\n \n @returns The priority number, or undefined if invalid.\n /\nexport function parsePriority(input: string): number \| undefined {\n const trimmed = input.trim().toUpperCase();\n if (!trimmed) return undefined;\n\n let numStr: string;\n if (trimmed.startsWith('P')) {\n // Prefixed format: P0, P1, etc.\n if (trimmed.length !== 2) return undefined;\n numStr = trimmed.slice(1);\n } else {\n // Numeric format: 0, 1, etc.\n numStr = trimmed;\n }\n\n const num = parseInt(numStr, 10);\n if (isNaN(num) \|\| num < MIN_PRIORITY \|\| num > MAX_PRIORITY) {\n return undefined;\n }\n\n return num;\n}\n\n/\n Get the color function for a priority value.\n \n - P0 (critical): red\n * - P1 (high): yellow\n * - P2-P4: no color (identity function)\n \n @param priority - The priority number (0-4)\n * @param colors - The colors object from createColors()\n * @returns A function that applies the appropriate color\n /\nexport function getPriorityColor(\n priority: number,\n colors: ReturnType<typeof createColors>,\n): (s: string) => string {\n switch (priority) {\n case 0:\n return colors.error;\n case 1:\n return colors.warn;\n default:\n return (s) => s;\n }\n}\n","/\n Generic project path utilities for handling user-provided paths.\n \n This module provides reusable functions for resolving, validating, and\n * normalizing paths relative to a project root. It is designed to be\n * general-purpose and not tied to any specific use case (e.g., specs).\n \n Key features:\n * - Resolves absolute, relative, and subdirectory paths to project-relative paths\n * - Validates that paths stay within project boundaries\n * - Normalizes paths (removes ./, converts backslashes, etc.)\n * - Validates file existence\n /\n\nimport { resolve, relative, isAbsolute, normalize, sep } from 'node:path';\nimport { access, stat } from 'node:fs/promises';\n\n/\n Result of resolving a path relative to the project root.\n /\nexport interface ResolvedProjectPath {\n /* Path relative to project root (always uses forward slashes) /\n relativePath: string;\n /* Absolute path to the file /\n absolutePath: string;\n}\n\n/\n Error thrown when a path operation fails.\n * The message is user-friendly and can be displayed directly.\n /\nexport class ProjectPathError extends Error {\n constructor(\n message: string,\n public readonly code: 'OUTSIDE_PROJECT' \| 'NOT_FOUND' \| 'NOT_A_FILE',\n ) {\n super(message);\n this.name = 'ProjectPathError';\n }\n}\n\n/\n Converts a ProjectPathError to a user-friendly error message for CLI display.\n * Returns the error message if it's a ProjectPathError, otherwise re-throws.\n /\nexport function getPathErrorMessage(error: unknown): string {\n if (error instanceof ProjectPathError) {\n return error.message;\n }\n throw error;\n}\n\n/\n Normalizes a path by:\n * - Removing leading ./\n * - Converting backslashes to forward slashes (Windows compatibility)\n * - Removing redundant slashes\n * - Resolving . and .. components\n \n @param inputPath - The path to normalize\n * @returns Normalized path string\n /\nexport function normalizePath(inputPath: string): string {\n if (!inputPath) {\n return '';\n }\n\n // First, convert all backslashes to forward slashes (Windows compatibility)\n // This must happen BEFORE normalize() since backslashes aren't path separators on Linux\n let normalized = inputPath.replace(/\\\\/g, '/');\n\n // Use Node's normalize to handle . and .. components\n // (normalize on Linux won't touch forward slashes)\n normalized = normalize(normalized);\n\n // Ensure we still have forward slashes after normalize (in case of mixed separators)\n normalized = normalized.split(sep).join('/');\n\n // Remove leading ./\n while (normalized.startsWith('./')) {\n normalized = normalized.slice(2);\n }\n\n // Remove trailing slash (unless it's just \"/\")\n if (normalized.length > 1 && normalized.endsWith('/')) {\n normalized = normalized.slice(0, -1);\n }\n\n // Handle edge case where normalize returns '.'\n if (normalized === '.') {\n return '';\n }\n\n return normalized;\n}\n\n/\n Checks if an absolute path is within the project root.\n \n @param absolutePath - The absolute path to check\n * @param projectRoot - The project root directory\n * @returns true if the path is within or at the project root\n /\nexport function isPathWithinProject(absolutePath: string, projectRoot: string): boolean {\n // Normalize both paths for consistent comparison\n const normalizedPath = resolve(absolutePath);\n const normalizedRoot = resolve(projectRoot);\n\n // The path is within the project if it starts with the project root\n // We need to handle the case where the path IS the project root\n // or is a subdirectory of it\n if (normalizedPath === normalizedRoot) {\n return true;\n }\n\n // Check if path starts with root + separator\n // This prevents false positives like /project-backup matching /project\n return normalizedPath.startsWith(normalizedRoot + sep);\n}\n\n/\n Resolves any path (absolute, relative, or from subdirectory) to a project-relative path.\n \n Resolution rules:\n * 1. Absolute paths within project → convert to relative\n * 2. Absolute paths outside project → error\n * 3. Relative paths from subdirectory → resolve to project root\n * 4. Already project-relative → pass through with normalization\n * 5. Path escaping project (../../) → error\n \n @param inputPath - The path provided by the user (can be absolute or relative)\n * @param projectRoot - The project root directory (parent of .tbd/)\n * @param cwd - Current working directory (where command was run)\n * @returns Resolved paths object with both relative and absolute paths\n * @throws ProjectPathError if path is outside project\n /\nexport function resolveProjectPath(\n inputPath: string,\n projectRoot: string,\n cwd: string,\n): ResolvedProjectPath {\n // Normalize inputs\n const normalizedProjectRoot = resolve(projectRoot);\n const normalizedCwd = resolve(cwd);\n\n let absolutePath: string;\n\n if (isAbsolute(inputPath)) {\n // Input is already absolute\n absolutePath = resolve(inputPath);\n } else {\n // Input is relative - resolve from current working directory\n absolutePath = resolve(normalizedCwd, inputPath);\n }\n\n // Check if path is within project\n if (!isPathWithinProject(absolutePath, normalizedProjectRoot)) {\n throw new ProjectPathError(`Path is outside project root: ${inputPath}`, 'OUTSIDE_PROJECT');\n }\n\n // Calculate relative path from project root\n const relativePath = relative(normalizedProjectRoot, absolutePath);\n\n // Normalize the relative path (remove ./, convert separators, etc.)\n const normalizedRelative = normalizePath(relativePath);\n\n return {\n relativePath: normalizedRelative,\n absolutePath,\n };\n}\n\n/\n Validates that a file exists at the resolved path.\n \n @param resolvedPath - Path already resolved via resolveProjectPath\n * @returns true if file exists\n * @throws ProjectPathError if file does not exist or is not a file\n /\nexport async function validateFileExists(resolvedPath: ResolvedProjectPath): Promise<boolean> {\n try {\n await access(resolvedPath.absolutePath);\n } catch {\n throw new ProjectPathError(`File not found: ${resolvedPath.relativePath}`, 'NOT_FOUND');\n }\n\n // Also verify it's a file, not a directory\n try {\n const stats = await stat(resolvedPath.absolutePath);\n if (!stats.isFile()) {\n throw new ProjectPathError(`Path is not a file: ${resolvedPath.relativePath}`, 'NOT_A_FILE');\n }\n } catch (error) {\n if (error instanceof ProjectPathError) {\n throw error;\n }\n throw new ProjectPathError(`File not found: ${resolvedPath.relativePath}`, 'NOT_FOUND');\n }\n\n return true;\n}\n\n/\n Convenience function that resolves and validates a path in one call.\n \n @param inputPath - The path provided by the user\n * @param projectRoot - The project root directory\n * @param cwd - Current working directory\n * @returns Resolved and validated path\n * @throws ProjectPathError if path is outside project or file doesn't exist\n /\nexport async function resolveAndValidatePath(\n inputPath: string,\n projectRoot: string,\n cwd: string,\n): Promise<ResolvedProjectPath> {\n const resolved = resolveProjectPath(inputPath, projectRoot, cwd);\n await validateFileExists(resolved);\n return resolved;\n}\n","/\n `tbd create` - Create a new issue.\n \n See: tbd-design.md §4.4 Create\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, ValidationError, CLIError } from '../lib/errors.js';\nimport type { Issue, IssueKindType, PriorityType } from '../../lib/types.js';\nimport { generateInternalId, extractUlidFromInternalId } from '../../lib/ids.js';\nimport { readIssue, writeIssue } from '../../file/storage.js';\nimport {\n loadIdMapping,\n saveIdMapping,\n generateUniqueShortId,\n addIdMapping,\n resolveToInternalId,\n} from '../../file/id-mapping.js';\nimport { IssueKind } from '../../lib/schemas.js';\nimport { parsePriority } from '../../lib/priority.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { readConfig } from '../../file/config.js';\nimport { resolveAndValidatePath, getPathErrorMessage } from '../../lib/project-paths.js';\n\ninterface CreateOptions {\n fromFile?: string;\n type?: string;\n priority?: string;\n description?: string;\n file?: string;\n assignee?: string;\n due?: string;\n defer?: string;\n parent?: string;\n label?: string[];\n spec?: string;\n}\n\nclass CreateHandler extends BaseCommand {\n async run(title: string \| undefined, options: CreateOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Validate title is provided (unless --from-file)\n if (!title && !options.fromFile) {\n throw new ValidationError('Title is required. Use: tbd create \"Issue title\"');\n }\n\n // Parse and validate options\n const kind = this.parseKind(options.type ?? 'task');\n const priority = this.validatePriority(options.priority ?? '2');\n\n // Read description from file if specified\n let description = options.description;\n if (options.file) {\n try {\n description = await readFile(options.file, 'utf-8');\n } catch (error) {\n const message = error instanceof Error ? error.message : String(error);\n throw new CLIError(`Failed to read description from file '${options.file}': ${message}`);\n }\n }\n\n // Validate and normalize spec path if provided\n let specPath: string \| undefined;\n if (options.spec) {\n try {\n const resolved = await resolveAndValidatePath(options.spec, tbdRoot, process.cwd());\n specPath = resolved.relativePath;\n } catch (error) {\n throw new ValidationError(getPathErrorMessage(error));\n }\n }\n\n if (\n this.checkDryRun('Would create issue', { title, kind, priority, spec: specPath, ...options })\n ) {\n return;\n }\n\n const timestamp = now();\n const id = generateInternalId();\n const ulid = extractUlidFromInternalId(id);\n\n let shortId: string;\n let prefix: string;\n let issue: Issue;\n await this.execute(async () => {\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Read config for display prefix\n const config = await readConfig(tbdRoot);\n prefix = config.display.id_prefix;\n\n // Load mapping, generate unique short ID, and save\n const mapping = await loadIdMapping(dataSyncDir);\n shortId = generateUniqueShortId(mapping);\n addIdMapping(mapping, ulid, shortId);\n\n // Resolve parent ID if provided (convert display ID to internal ID)\n let parentId: string \| undefined;\n if (options.parent) {\n try {\n parentId = resolveToInternalId(options.parent, mapping);\n } catch {\n throw new ValidationError(`Invalid parent ID: ${options.parent}`);\n }\n }\n\n // Inherit spec_path from parent if not explicitly provided\n if (!specPath && parentId) {\n const parentIssue = await readIssue(dataSyncDir, parentId);\n if (parentIssue.spec_path) {\n specPath = parentIssue.spec_path;\n }\n }\n\n issue = {\n type: 'is',\n id,\n version: 1,\n title: title!,\n kind,\n status: 'open',\n priority,\n labels: options.label ?? [],\n dependencies: [],\n created_at: timestamp,\n updated_at: timestamp,\n description: description ?? undefined,\n assignee: options.assignee ?? undefined,\n due_date: options.due ?? undefined,\n deferred_until: options.defer ?? undefined,\n parent_id: parentId,\n spec_path: specPath,\n };\n\n // Write both the issue and the mapping\n await writeIssue(dataSyncDir, issue);\n await saveIdMapping(dataSyncDir, mapping);\n\n // When creating with a parent, append child to parent's child_order_hints\n if (parentId) {\n try {\n const parentIssue = await readIssue(dataSyncDir, parentId);\n const hints = parentIssue.child_order_hints ?? [];\n\n // Only append if not already in hints (shouldn't happen for new issue, but safe)\n if (!hints.includes(id)) {\n parentIssue.child_order_hints = [...hints, id];\n parentIssue.version += 1;\n parentIssue.updated_at = timestamp;\n await writeIssue(dataSyncDir, parentIssue);\n }\n } catch {\n // Parent not found or other error - skip order hint update\n }\n }\n }, 'Failed to create issue');\n\n // Output with display ID (prefix + short ID)\n const displayId = `${prefix!}-${shortId!}`;\n this.output.data({ id: displayId, internalId: id, title }, () => {\n this.output.success(`Created ${displayId}: ${title}`);\n });\n }\n\n private parseKind(value: string): IssueKindType {\n const result = IssueKind.safeParse(value);\n if (!result.success) {\n throw new ValidationError(`Invalid type: ${value}. Must be: bug, feature, task, epic, chore`);\n }\n return result.data;\n }\n\n private validatePriority(value: string): PriorityType {\n // Use shared parsePriority which accepts both \"P1\" and \"1\" formats\n const num = parsePriority(value);\n if (num === undefined) {\n throw new ValidationError(`Invalid priority: ${value}. Use P0-P4 or 0-4.`);\n }\n return num;\n }\n}\n\nexport const createCommand = new Command('create')\n .description('Create a new issue')\n .argument('[title]', 'Issue title')\n .option('--from-file <path>', 'Create from YAML+Markdown file')\n .option('-t, --type <type>', 'Issue type: bug, feature, task, epic, chore', 'task')\n .option('-p, --priority <0-4>', 'Priority (0=critical, 4=lowest)', '2')\n .option('-d, --description <text>', 'Description')\n .option('-f, --file <path>', 'Read description from file')\n .option('--assignee <name>', 'Assignee')\n .option('--due <date>', 'Due date (ISO8601)')\n .option('--defer <date>', 'Defer until date (ISO8601)')\n .option('--parent <id>', 'Parent issue ID')\n .option('--spec <path>', 'Link to spec document (relative path)')\n .option('-l, --label <label>', 'Add label (repeatable)', (val, prev: string[] = []) => [\n ...prev,\n val,\n ])\n .action(async (title, options, command) => {\n const handler = new CreateHandler(command);\n await handler.run(title, options);\n });\n","/\n Utility for parsing limit options in CLI commands.\n /\n\n/\n Parse a limit option and apply it to an array.\n \n @param items - Array to limit\n * @param limitOption - String limit option from CLI (may be undefined)\n * @returns Limited array (or original if no valid limit)\n /\nexport function applyLimit<T>(items: T[], limitOption: string \| undefined): T[] {\n if (!limitOption) {\n return items;\n }\n const limit = parseInt(limitOption, 10);\n if (isNaN(limit) \|\| limit <= 0) {\n return items;\n }\n return items.slice(0, limit);\n}\n","/\n Shared data context for tbd commands.\n \n Provides a single point to load common data needed by most commands:\n * - dataSyncDir: the path to the data sync directory\n * - mapping: the ID mapping (ULID to short ID)\n * - config: the project configuration\n * - prefix: the display prefix (from config.display.id_prefix)\n \n This eliminates the repetitive pattern of loading these individually in each command.\n \n For unified CLI + data context with helper methods, use FullCommandContext and\n * loadFullContext() which adds displayId() and other conveniences.\n /\n\nimport type { Command } from 'commander';\nimport type { IdMapping } from '../../file/id-mapping.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\nimport type { Config } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport type { CommandContext } from './context.js';\nimport { getCommandContext } from './context.js';\nimport { requireInit, NotFoundError } from './errors.js';\n\n/\n Data context containing commonly needed data for tbd commands.\n /\nexport interface TbdDataContext {\n /* Path to the data sync directory /\n dataSyncDir: string;\n /* ID mapping (ULID to short ID and vice versa) /\n mapping: IdMapping;\n /* Project configuration /\n config: Config;\n /* Display prefix from config (convenience accessor) /\n prefix: string;\n}\n\n/\n Full command context combining CLI options with data context.\n * Provides unified access to all command needs with helper methods.\n /\nexport interface FullCommandContext extends TbdDataContext {\n /* CLI options (dryRun, verbose, json, debug, etc.) /\n cli: CommandContext;\n /\n Format an internal issue ID for display.\n * Automatically respects debug mode to show full internal ID.\n /\n displayId(internalId: string): string;\n /\n Resolve user input ID to internal ID.\n * @throws NotFoundError if the ID cannot be resolved\n /\n resolveId(inputId: string): string;\n}\n\n/\n Load all common data context needed by tbd commands.\n \n This loads:\n * - dataSyncDir from resolveDataSyncDir()\n * - mapping from loadIdMapping()\n * - config from readConfig()\n * - prefix from config.display.id_prefix\n \n Call this once at the start of a command handler instead of\n * loading each piece separately.\n \n @param tbdRoot - The tbd repository root directory (from requireInit or findTbdRoot)\n * @throws Error if any of the resources fail to load\n /\nexport async function loadDataContext(tbdRoot: string): Promise<TbdDataContext> {\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n const [mapping, config] = await Promise.all([loadIdMapping(dataSyncDir), readConfig(tbdRoot)]);\n\n return {\n dataSyncDir,\n mapping,\n config,\n prefix: config.display.id_prefix,\n };\n}\n\n/\n Load unified command context with CLI options, data, and helper methods.\n \n This is the recommended way to initialize command context. It:\n * 1. Checks that tbd is initialized (calls requireInit)\n * 2. Loads data context (dataSyncDir, mapping, config, prefix)\n * 3. Extracts CLI context from Commander\n * 4. Provides helper methods like displayId() and resolveId()\n \n Usage:\n * ```ts\n * class MyHandler extends BaseCommand {\n * async run(id: string): Promise<void> {\n * const ctx = await loadFullContext(this.command);\n * const internalId = ctx.resolveId(id);\n * const issue = await readIssue(ctx.dataSyncDir, internalId);\n * console.log(ctx.displayId(issue.id));\n * }\n * }\n * ```\n \n @param command - The Commander command instance\n * @throws Error if tbd is not initialized or resources fail to load\n /\nexport async function loadFullContext(command: Command): Promise<FullCommandContext> {\n const tbdRoot = await requireInit();\n\n const cli = getCommandContext(command);\n const dataCtx = await loadDataContext(tbdRoot);\n\n return {\n ...dataCtx,\n cli,\n displayId(internalId: string): string {\n return cli.debug\n ? formatDebugId(internalId, dataCtx.mapping, dataCtx.prefix)\n : formatDisplayId(internalId, dataCtx.mapping, dataCtx.prefix);\n },\n resolveId(inputId: string): string {\n try {\n return resolveToInternalId(inputId, dataCtx.mapping);\n } catch {\n throw new NotFoundError('Issue', inputId);\n }\n },\n };\n}\n","/\n Comparison chain utilities for complex multi-field sorting.\n \n Inspired by Google Guava's ComparisonChain, this provides a fluent API\n * for building comparators with multiple sort keys, null handling, and\n * custom orderings.\n \n Example:\n \n items.sort(comparisonChain<Item>()\n * .compare(item => item.title, ordering.nullsLast)\n * .compare(item => item.url)\n * .result());\n /\n\nexport type Selector<T, K> = (item: T) => K;\nexport type Comparator<T> = (a: T, b: T) => number;\n\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nconst defaultCompare: Comparator<any> = (a, b) => {\n if (typeof a === 'string' && typeof b === 'string') {\n return a.localeCompare(b);\n }\n if (a < b) return -1;\n if (a > b) return 1;\n return 0;\n};\n\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nconst nullLastCompare: Comparator<any> = (a, b) => {\n if (a == null) return b == null ? 0 : 1;\n if (b == null) return -1;\n return defaultCompare(a, b);\n};\n\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nconst nullFirstCompare: Comparator<any> = (a, b) => {\n if (a == null) return b == null ? 0 : -1;\n if (b == null) return 1;\n return defaultCompare(a, b);\n};\n\n/\n A Google Guava-style comparison chain to make complex sorting, such as secondary\n * sorts, significantly easier.\n \n For example:\n \n items.sort(comparisonChain<Item>()\n * .compare(item => item.title, ordering.nullsLast)\n * .compare(item => item.url)\n * .result());\n /\nexport const comparisonChain = <T>() => {\n let compare: Comparator<T> = () => 0;\n\n const chain: {\n compare: <K>(selector: Selector<T, K>, comparator?: Comparator<K>) => typeof chain;\n result: () => Comparator<T>;\n } = {\n compare: <K>(selector: Selector<T, K>, comparator: Comparator<K> = defaultCompare) => {\n const prevCompare = compare;\n compare = (a, b) => prevCompare(a, b) \|\| comparator(selector(a), selector(b));\n return chain;\n },\n result: () => compare,\n };\n\n return chain;\n};\n\n/\n Reverse a comparator's ordering.\n /\nexport const reverse =\n <T>(comparator: Comparator<T>) =>\n (a: T, b: T) =>\n comparator(b, a);\n\n/\n Create a comparator that sorts values in a manually specified order.\n * Values not in the order array are placed at the end.\n /\nconst manualOrderComparator = <T>(order: readonly T[]): Comparator<T> => {\n const orderMap = new Map(order.map((value, index) => [value, index]));\n\n return (a: T, b: T): number => {\n const indexA = orderMap.get(a);\n const indexB = orderMap.get(b);\n\n // Values not in the manually ordered array go at the end.\n if (indexA === undefined) return indexB === undefined ? 0 : 1;\n if (indexB === undefined) return -1;\n\n return indexA - indexB;\n };\n};\n\n/\n Common ordering strategies for use with comparisonChain.\n /\nexport const ordering = {\n nullsLast: nullLastCompare,\n nullsFirst: nullFirstCompare,\n default: defaultCompare,\n reversed: reverse(defaultCompare),\n manual: manualOrderComparator,\n};\n","/\n Status formatting utilities.\n \n Status values: open, in_progress, blocked, deferred, closed.\n /\n\nimport { ICONS, type createColors } from '../cli/lib/output.js';\nimport type { IssueStatusType } from './types.js';\n\n/\n Get the icon for a status value.\n \n - open: ○ (empty circle)\n * - in_progress: ◐ (half-filled circle)\n * - blocked: ● (filled circle)\n * - deferred: ○ (empty circle, same as open)\n * - closed: ✓ (checkmark)\n /\nexport function getStatusIcon(status: IssueStatusType): string {\n switch (status) {\n case 'open':\n return ICONS.OPEN;\n case 'in_progress':\n return ICONS.IN_PROGRESS;\n case 'blocked':\n return ICONS.BLOCKED;\n case 'deferred':\n return ICONS.DEFERRED;\n case 'closed':\n return ICONS.CLOSED;\n default:\n return '';\n }\n}\n\n/\n Format a status for display with icon prefix.\n * Format: \"icon status\" (e.g., \"○ open\", \"◐ in_progress\")\n \n @example formatStatus('open') → \"○ open\"\n * @example formatStatus('blocked') → \"● blocked\"\n /\nexport function formatStatus(status: IssueStatusType): string {\n const icon = getStatusIcon(status);\n return `${icon} ${status}`;\n}\n\n/\n Get the color function for a status value.\n \n - open: blue (info)\n * - in_progress: green (success)\n * - blocked: red (error)\n * - deferred: dim\n * - closed: dim\n \n @param status - The status value\n * @param colors - The colors object from createColors()\n * @returns A function that applies the appropriate color\n /\nexport function getStatusColor(\n status: IssueStatusType,\n colors: ReturnType<typeof createColors>,\n): (s: string) => string {\n switch (status) {\n case 'open':\n return colors.info;\n case 'in_progress':\n return colors.success;\n case 'blocked':\n return colors.error;\n case 'deferred':\n return colors.dim;\n case 'closed':\n return colors.dim;\n default:\n return (s) => s;\n }\n}\n","/\n Text truncation utilities for CLI output.\n \n Provides consistent truncation with Unicode ellipsis character.\n /\n\n/\n Unicode ellipsis character (U+2026). Use this instead of '...'.\n /\nexport const ELLIPSIS = '…';\n\n/\n Options for truncate function.\n /\nexport interface TruncateOptions {\n /* If true, truncate at last word boundary before maxLength. /\n wordBoundary?: boolean;\n}\n\n/\n Truncate text to maxLength, appending ellipsis if truncated.\n \n @param text - Text to truncate\n * @param maxLength - Maximum length including ellipsis\n * @param options - Truncation options\n * @returns Truncated text with ellipsis, or original if short enough\n /\nexport function truncate(text: string, maxLength: number, options?: TruncateOptions): string {\n if (maxLength <= 0) {\n return '';\n }\n\n if (text.length <= maxLength) {\n return text;\n }\n\n if (maxLength === 1) {\n return ELLIPSIS;\n }\n\n const truncatedLength = maxLength - 1; // Reserve space for ellipsis\n\n if (options?.wordBoundary) {\n // Find last space within the truncation limit\n const lastSpace = text.lastIndexOf(' ', truncatedLength);\n if (lastSpace > 0) {\n return text.slice(0, lastSpace) + ELLIPSIS;\n }\n }\n\n // Character-level truncation\n return text.slice(0, truncatedLength) + ELLIPSIS;\n}\n\n/\n Truncate text from the middle, preserving start and end.\n * Useful for paths and IDs where both prefix and suffix are meaningful.\n \n @param text - Text to truncate\n * @param maxLength - Maximum length including ellipsis\n * @returns Truncated text with ellipsis in middle, or original if short enough\n /\nexport function truncateMiddle(text: string, maxLength: number): string {\n if (maxLength <= 0) {\n return '';\n }\n\n if (text.length <= maxLength) {\n return text;\n }\n\n if (maxLength === 1) {\n return ELLIPSIS;\n }\n\n if (maxLength === 2) {\n // Only room for one char + ellipsis\n return text[0] + ELLIPSIS;\n }\n\n // Calculate how many characters to keep on each side\n // Subtract 1 for the ellipsis\n const availableChars = maxLength - 1;\n const endLength = Math.floor(availableChars / 2);\n const startLength = availableChars - endLength;\n\n const start = text.slice(0, startLength);\n const end = text.slice(text.length - endLength);\n\n return start + ELLIPSIS + end;\n}\n","/\n Issue formatting utilities for consistent CLI output.\n \n Provides standardized formatting for issue display across all commands.\n /\n\nimport { formatPriority, getPriorityColor } from '../../lib/priority.js';\nimport { getStatusIcon, getStatusColor } from '../../lib/status.js';\nimport { truncate, ELLIPSIS } from '../../lib/truncate.js';\nimport type { createColors } from './output.js';\nimport type { IssueKindType, IssueStatusType } from '../../lib/types.js';\n\n/\n Column width constants for issue tables.\n /\nexport const ISSUE_COLUMNS = {\n ID: 12,\n PRIORITY: 5,\n STATUS: 16,\n ASSIGNEE: 10,\n} as const;\n\n/\n Issue data structure for formatting.\n /\nexport interface IssueForDisplay {\n id: string;\n priority: number;\n status: IssueStatusType;\n kind: IssueKindType;\n title: string;\n description?: string;\n labels?: string[];\n assignee?: string;\n}\n\n/\n Format a kind in brackets.\n \n @example formatKind('bug') → \"[bug]\"\n * @example formatKind('feature') → \"[feature]\"\n /\nexport function formatKind(kind: IssueKindType): string {\n return `[${kind}]`;\n}\n\n/\n Format a standard issue line for table display.\n \n Format: {ID} {PRI} {STATUS} [kind] {TITLE}\n \n @example \"bd-a1b2 P0 ● blocked [bug] Fix authentication timeout\"\n /\nexport function formatIssueLine(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const idCol = colors.id(issue.id.padEnd(ISSUE_COLUMNS.ID));\n const priCol = getPriorityColor(\n issue.priority,\n colors,\n )(formatPriority(issue.priority).padEnd(ISSUE_COLUMNS.PRIORITY));\n const statusText = `${getStatusIcon(issue.status)} ${issue.status}`;\n const statusCol = getStatusColor(issue.status, colors)(statusText.padEnd(ISSUE_COLUMNS.STATUS));\n const kindPrefix = colors.dim(formatKind(issue.kind));\n\n return `${idCol}${priCol}${statusCol}${kindPrefix} ${issue.title}`;\n}\n\n/\n Format an extended issue line with assignee column.\n \n Format: {ID} {PRI} {STATUS} {ASSIGNEE} [kind] {TITLE}\n /\nexport function formatIssueLineExtended(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const idCol = colors.id(issue.id.padEnd(ISSUE_COLUMNS.ID));\n const priCol = getPriorityColor(\n issue.priority,\n colors,\n )(formatPriority(issue.priority).padEnd(ISSUE_COLUMNS.PRIORITY));\n const statusText = `${getStatusIcon(issue.status)} ${issue.status}`;\n const statusCol = getStatusColor(issue.status, colors)(statusText.padEnd(ISSUE_COLUMNS.STATUS));\n const assigneeText = issue.assignee ? `@${issue.assignee}` : '-';\n const assigneeCol = assigneeText.padEnd(ISSUE_COLUMNS.ASSIGNEE);\n const kindPrefix = colors.dim(formatKind(issue.kind));\n\n return `${idCol}${priCol}${statusCol}${assigneeCol}${kindPrefix} ${issue.title}`;\n}\n\n/\n Format an issue line with labels.\n \n Format: {ID} {PRI} {STATUS} [kind] {TITLE} [labels]\n /\nexport function formatIssueWithLabels(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const baseLine = formatIssueLine(issue, colors);\n\n if (!issue.labels \|\| issue.labels.length === 0) {\n return baseLine;\n }\n\n const labelsText = colors.label(`[${issue.labels.join(', ')}]`);\n return `${baseLine} ${labelsText}`;\n}\n\n/\n Format a compact issue reference.\n \n Format: {ID} {STATUS_ICON} {TITLE}\n * (No kind shown)\n \n @example \"bd-a1b2 ● Fix authentication timeout\"\n /\nexport function formatIssueCompact(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const icon = getStatusIcon(issue.status);\n return `${colors.id(issue.id)} ${icon} ${issue.title}`;\n}\n\n/\n Format an inline issue mention.\n \n Format: {ID} ({TITLE})\n * (No kind shown)\n \n @example \"bd-a1b2 (Fix authentication timeout)\"\n /\nexport function formatIssueInline(issue: IssueForDisplay): string {\n return `${issue.id} (${issue.title})`;\n}\n\n/\n Format the table header row for issue listings.\n /\nexport function formatIssueHeader(colors: ReturnType<typeof createColors>): string {\n const idHeader = 'ID'.padEnd(ISSUE_COLUMNS.ID);\n const priHeader = 'PRI'.padEnd(ISSUE_COLUMNS.PRIORITY);\n const statusHeader = 'STATUS'.padEnd(ISSUE_COLUMNS.STATUS);\n const titleHeader = 'TITLE';\n\n return colors.dim(`${idHeader}${priHeader}${statusHeader}${titleHeader}`);\n}\n\n/\n Format the extended table header row with assignee column.\n /\nexport function formatIssueHeaderExtended(colors: ReturnType<typeof createColors>): string {\n const idHeader = 'ID'.padEnd(ISSUE_COLUMNS.ID);\n const priHeader = 'PRI'.padEnd(ISSUE_COLUMNS.PRIORITY);\n const statusHeader = 'STATUS'.padEnd(ISSUE_COLUMNS.STATUS);\n const assigneeHeader = 'ASSIGNEE'.padEnd(ISSUE_COLUMNS.ASSIGNEE);\n const titleHeader = 'TITLE';\n\n return colors.dim(`${idHeader}${priHeader}${statusHeader}${assigneeHeader}${titleHeader}`);\n}\n\n/\n Format an issue with long format (includes description on second line).\n \n Description is indented 6 spaces, dim color, max 2 lines.\n /\nexport function formatIssueLong(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n maxWidth = 80,\n): string {\n const firstLine = formatIssueLine(issue, colors);\n\n if (!issue.description) {\n return firstLine;\n }\n\n const descLines = wrapDescription(issue.description, 6, 2, maxWidth);\n if (!descLines) {\n return firstLine;\n }\n\n return `${firstLine}\\n${colors.dim(descLines)}`;\n}\n\n/\n Word-wrap description text with indentation.\n \n @param text - The text to wrap\n * @param indent - Number of spaces to indent each line\n * @param maxLines - Maximum number of lines (truncates with ellipsis)\n * @param maxWidth - Maximum width per line (including indent)\n /\nexport function wrapDescription(\n text: string,\n indent: number,\n maxLines: number,\n maxWidth: number,\n): string {\n if (!text) return '';\n\n const indentStr = ' '.repeat(indent);\n const contentWidth = maxWidth - indent;\n\n // Split into words and wrap\n const words = text.split(/\\s+/);\n const lines: string[] = [];\n let currentLine = '';\n\n for (const word of words) {\n if (!currentLine) {\n currentLine = word;\n } else if (currentLine.length + 1 + word.length <= contentWidth) {\n currentLine += ' ' + word;\n } else {\n lines.push(currentLine);\n currentLine = word;\n\n // Stop if we've hit max lines\n if (lines.length >= maxLines) {\n break;\n }\n }\n }\n\n // Add remaining content\n if (currentLine && lines.length < maxLines) {\n lines.push(currentLine);\n }\n\n // Truncate last line if we have more content\n if (lines.length === maxLines && currentLine && !lines.includes(currentLine)) {\n const lastLine = lines[maxLines - 1];\n if (lastLine) {\n lines[maxLines - 1] = truncate(lastLine, contentWidth - 1) + ELLIPSIS;\n }\n }\n\n return lines.map((line) => indentStr + line).join('\\n');\n}\n\n/\n Format a spec path with the filename portion bolded.\n \n e.g. \"docs/project/specs/active/plan-2026-01-27-my-feature.md\"\n * → \"docs/project/specs/active/\" + bold(\"plan-2026-01-27-my-feature.md\")\n /\nexport function formatSpecName(specPath: string, colors: ReturnType<typeof createColors>): string {\n const lastSlash = specPath.lastIndexOf('/');\n if (lastSlash === -1) {\n return colors.bold(specPath);\n }\n const dir = specPath.slice(0, lastSlash + 1);\n const filename = specPath.slice(lastSlash + 1);\n return dir + colors.bold(filename);\n}\n\n/\n Format a spec group header for --specs output.\n \n Renders \"Spec: path/to/bold-filename.md (count)\".\n /\nexport function formatSpecGroupHeader(\n specPath: string,\n count: number,\n colors: ReturnType<typeof createColors>,\n): string {\n return 'Spec: ' + formatSpecName(specPath, colors) + colors.dim(` (${count})`);\n}\n\n/\n Format the \"No spec\" group header for beads without a linked spec.\n /\nexport function formatNoSpecGroupHeader(\n count: number,\n colors: ReturnType<typeof createColors>,\n): string {\n return colors.bold('(No spec)') + colors.dim(` (${count})`);\n}\n","/\n Tree view utilities for displaying issues with parent-child relationships.\n \n Used by `tbd list --pretty` to show hierarchical issue structure.\n /\n\nimport type { createColors } from './output.js';\nimport { formatPriority, getPriorityColor } from '../../lib/priority.js';\nimport { getStatusIcon, getStatusColor } from '../../lib/status.js';\nimport {\n formatKind,\n wrapDescription,\n ISSUE_COLUMNS,\n type IssueForDisplay,\n} from './issue-format.js';\nimport { comparisonChain, ordering } from '../../lib/comparison-chain.js';\nimport type { InternalIssueId } from '../../lib/ids.js';\n\n/\n Options for tree rendering.\n /\nexport interface TreeRenderOptions {\n /* Show descriptions (--long mode) /\n long?: boolean;\n /* Terminal width for description wrapping /\n maxWidth?: number;\n}\n\n/\n Tree node representing an issue with its children.\n /\nexport interface TreeNode {\n issue: IssueForDisplay;\n children: TreeNode[];\n}\n\n/\n Unicode box-drawing characters for tree display.\n /\nconst TREE_CHARS = {\n /* Middle child connector: ├── /\n BRANCH: '├── ',\n /* Last child connector: └── /\n LAST: '└── ',\n /* Vertical line continuation: │ /\n VERTICAL: '│ ',\n /* Empty space for alignment: /\n SPACE: ' ',\n} as const;\n\n/\n Issue input for tree building, with optional parent and ordering hints.\n /\nexport interface IssueForTree extends IssueForDisplay {\n parentId?: string;\n /* Internal ID for matching against order hints (optional, defaults to id) /\n internalId?: InternalIssueId;\n /* Ordered list of child internal IDs for preferred display order /\n child_order_hints?: InternalIssueId[];\n}\n\n/\n Get the internal ID for an issue (used for matching against order hints).\n * Falls back to display ID if internalId is not set.\n /\nfunction getInternalId(issue: IssueForTree): string {\n return issue.internalId ?? issue.id;\n}\n\n/\n Sort children using order hints from the parent.\n \n Children in hints appear first, in hints order.\n * Children not in hints appear after, sorted by ID for determinism.\n * Uses internalId for matching against hints (which contain internal IDs).\n /\nfunction sortChildren(children: TreeNode[], hints: InternalIssueId[] \| undefined): void {\n if (!hints \|\| hints.length === 0) {\n // No hints - sort by ID for determinism\n children.sort(\n comparisonChain<TreeNode>()\n .compare((n) => n.issue.id)\n .result(),\n );\n return;\n }\n\n // Sort using manual ordering: items in hints first, then by ID\n // Use internalId for matching since hints contain internal IDs\n // Cast to string[] since ordering.manual works with any strings\n children.sort(\n comparisonChain<TreeNode>()\n .compare((n) => getInternalId(n.issue as IssueForTree), ordering.manual(hints as string[]))\n .compare((n) => n.issue.id) // Secondary sort for items not in hints\n .result(),\n );\n}\n\n/\n Build a tree structure from a flat list of issues.\n \n Groups children under their parents based on parent_id.\n * Issues without a parent (or whose parent is not in the list) become root nodes.\n * Children are sorted according to parent's child_order_hints if available.\n \n @param issues - Flat list of issues with optional parent_id and child_order_hints\n * @returns Array of root tree nodes with nested children\n /\nexport function buildIssueTree(issues: IssueForTree[]): TreeNode[] {\n // Create a map for quick lookup by ID\n const issueMap = new Map<string, TreeNode>();\n // Store order hints per parent (internal IDs for child ordering)\n const orderHintsMap = new Map<string, InternalIssueId[]>();\n const roots: TreeNode[] = [];\n\n // First pass: create nodes for all issues and collect order hints\n for (const issue of issues) {\n issueMap.set(issue.id, { issue, children: [] });\n if (issue.child_order_hints) {\n orderHintsMap.set(issue.id, issue.child_order_hints);\n }\n }\n\n // Second pass: build parent-child relationships\n for (const issue of issues) {\n const node = issueMap.get(issue.id)!;\n\n if (issue.parentId && issueMap.has(issue.parentId)) {\n // Has a parent that's in our list - add as child\n const parentNode = issueMap.get(issue.parentId)!;\n parentNode.children.push(node);\n } else {\n // No parent or parent not in list - this is a root\n roots.push(node);\n }\n }\n\n // Third pass: sort children using parent's order hints\n for (const node of issueMap.values()) {\n if (node.children.length > 0) {\n const hints = orderHintsMap.get(node.issue.id);\n sortChildren(node.children, hints);\n }\n }\n\n // Root nodes preserve their input order (list command already sorts by priority)\n\n return roots;\n}\n\n/\n Format a single issue line for tree view (no header, compact format).\n \n Format: {ID} {PRI} {STATUS} [kind] {TITLE}\n \n ID column is padded to ISSUE_COLUMNS.ID width for consistent alignment.\n /\nfunction formatTreeIssueLine(\n issue: IssueForDisplay,\n colors: ReturnType<typeof createColors>,\n): string {\n const id = colors.id(issue.id.padEnd(ISSUE_COLUMNS.ID));\n const pri = getPriorityColor(issue.priority, colors)(formatPriority(issue.priority));\n const statusText = `${getStatusIcon(issue.status)} ${issue.status}`;\n const status = getStatusColor(issue.status, colors)(statusText);\n const kind = colors.dim(formatKind(issue.kind));\n\n return `${id} ${pri} ${status} ${kind} ${issue.title}`;\n}\n\n/\n Render a tree node and its children as formatted lines.\n \n @param node - The tree node to render\n * @param colors - Color functions for formatting\n * @param prefix - Current line prefix (for nested indentation)\n * @param options - Rendering options (long mode, max width)\n * @returns Array of formatted lines\n /\nfunction renderTreeNode(\n node: TreeNode,\n colors: ReturnType<typeof createColors>,\n prefix = '',\n options: TreeRenderOptions = {},\n): string[] {\n const lines: string[] = [];\n const { long = false, maxWidth = 80 } = options;\n\n // Render this node\n const issueLine = formatTreeIssueLine(node.issue, colors);\n lines.push(prefix + issueLine);\n\n // Render description if --long and description exists\n if (long && node.issue.description) {\n // Calculate indent: prefix length + 6 spaces for description alignment\n const descIndent = prefix.length + 6;\n const descWidth = maxWidth - descIndent;\n if (descWidth > 20) {\n const wrapped = wrapDescription(node.issue.description, 6, 2, descWidth + 6);\n if (wrapped) {\n // Add prefix to each description line\n const descLines = wrapped.split('\\n');\n for (const descLine of descLines) {\n lines.push(prefix + colors.dim(descLine));\n }\n }\n }\n }\n\n // Render children\n const childCount = node.children.length;\n node.children.forEach((child, index) => {\n const isLastChild = index === childCount - 1;\n\n // Determine the connector for this child\n const connector = isLastChild ? TREE_CHARS.LAST : TREE_CHARS.BRANCH;\n\n // Determine the prefix for continuation lines (descriptions, grandchildren)\n // If this child is not last, we need a vertical line; otherwise space\n const childPrefix = prefix + (isLastChild ? TREE_CHARS.SPACE : TREE_CHARS.VERTICAL);\n\n // Render child with childPrefix so it knows the correct indentation for descriptions\n const childLines = renderTreeNode(child, colors, childPrefix, options);\n\n // Process lines: first line gets connector, others keep childPrefix\n childLines.forEach((line, lineIndex) => {\n if (lineIndex === 0) {\n // Replace childPrefix with connector for the first line\n const lineWithoutPrefix = line.slice(childPrefix.length);\n lines.push(colors.dim(connector) + lineWithoutPrefix);\n } else {\n // Keep childPrefix for continuation lines (already included)\n lines.push(line);\n }\n });\n });\n\n return lines;\n}\n\n/\n Render a complete tree view of issues.\n \n @param roots - Array of root tree nodes\n * @param colors - Color functions for formatting\n * @param options - Rendering options (long mode, max width)\n * @returns Array of formatted lines (without header, count is separate)\n /\nexport function renderIssueTree(\n roots: TreeNode[],\n colors: ReturnType<typeof createColors>,\n options: TreeRenderOptions = {},\n): string[] {\n const lines: string[] = [];\n\n for (const root of roots) {\n const rootLines = renderTreeNode(root, colors, '', options);\n lines.push(...rootLines);\n }\n\n return lines;\n}\n\n/\n Count total issues in a tree (including all nested children).\n /\nexport function countTreeIssues(roots: TreeNode[]): number {\n let count = 0;\n\n function countNode(node: TreeNode): void {\n count++;\n for (const child of node.children) {\n countNode(child);\n }\n }\n\n for (const root of roots) {\n countNode(root);\n }\n\n return count;\n}\n","/\n Spec path matching utilities.\n \n Provides gradual path matching for linking beads to spec documents.\n * Supports matching by filename, partial path suffix, or full path.\n \n See: plan-2026-01-26-spec-linking.md §Gradual Path Matching Algorithm\n /\n\nimport { basename } from 'node:path';\n\n/\n Check if a stored spec path matches a query path using gradual matching.\n \n Matching rules (in order of precedence):\n * 1. Exact match after normalization\n * 2. Suffix match: stored path ends with query path at a path separator\n * 3. Filename match: query matches the filename portion of stored path\n \n @param storedPath - The spec_path stored in the issue (e.g., \"docs/specs/plan-feature.md\")\n * @param queryPath - The path to match against (e.g., \"plan-feature.md\" or \"specs/plan-feature.md\")\n * @returns true if the paths match\n \n @example\n * // All these queries match stored path \"docs/project/specs/active/plan-2026-01-26-feature.md\":\n * matchesSpecPath(stored, \"plan-2026-01-26-feature.md\") // filename match\n * matchesSpecPath(stored, \"feature.md\") // partial filename - NO MATCH (too ambiguous)\n * matchesSpecPath(stored, \"active/plan-2026-01-26-feature.md\") // suffix match\n * matchesSpecPath(stored, \"docs/project/specs/active/plan-2026-01-26-feature.md\") // exact match\n /\nexport function matchesSpecPath(storedPath: string, queryPath: string): boolean {\n // Handle empty/null cases\n if (!storedPath \|\| !queryPath) {\n return false;\n }\n\n // Normalize paths: remove leading ./ and trailing /\n const normalizedStored = normalizePath(storedPath);\n const normalizedQuery = normalizePath(queryPath);\n\n // Empty after normalization\n if (!normalizedStored \|\| !normalizedQuery) {\n return false;\n }\n\n // 1. Exact match\n if (normalizedStored === normalizedQuery) {\n return true;\n }\n\n // 2. Suffix match: stored path ends with /query\n // This handles partial path matches like \"active/plan.md\" matching \"docs/specs/active/plan.md\"\n if (normalizedStored.endsWith('/' + normalizedQuery)) {\n return true;\n }\n\n // 3. Filename match: query is just a filename that matches stored's filename\n const storedFilename = basename(normalizedStored);\n const queryFilename = basename(normalizedQuery);\n\n // Only do filename match if query has no directory components\n // (otherwise it would have matched in suffix check above)\n if (!normalizedQuery.includes('/') && storedFilename === normalizedQuery) {\n return true;\n }\n\n // Also match if both have same filename and query is just a filename\n if (!normalizedQuery.includes('/') && storedFilename === queryFilename) {\n return true;\n }\n\n return false;\n}\n\n/\n Normalize a path for comparison.\n * - Removes leading ./\n * - Removes trailing /\n * - Collapses multiple slashes\n /\nfunction normalizePath(path: string): string {\n return path\n .replace(/^\\.\\//, '') // Remove leading ./\n .replace(/\\/+$/, '') // Remove trailing /\n .replace(/\\/+/g, '/'); // Collapse multiple slashes\n}\n","/\n `tbd list` - List issues.\n \n See: tbd-design.md §4.4 List\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { requireInit } from '../lib/errors.js';\nimport { loadDataContext } from '../lib/data-context.js';\nimport type { Issue, IssueStatusType, IssueKindType } from '../../lib/types.js';\nimport { listIssues } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId, extractUlidFromInternalId } from '../../lib/ids.js';\nimport type { IdMapping } from '../../file/id-mapping.js';\nimport { resolveToInternalId } from '../../file/id-mapping.js';\nimport { naturalCompare } from '../../lib/sort.js';\nimport { comparisonChain, ordering } from '../../lib/comparison-chain.js';\nimport {\n formatIssueLine,\n formatIssueLong,\n formatIssueHeader,\n formatSpecGroupHeader,\n formatNoSpecGroupHeader,\n type IssueForDisplay,\n} from '../lib/issue-format.js';\nimport { parsePriority } from '../../lib/priority.js';\nimport { buildIssueTree, renderIssueTree } from '../lib/tree-view.js';\nimport { getTerminalWidth, type createColors } from '../lib/output.js';\nimport { matchesSpecPath } from '../../lib/spec-matching.js';\n\ninterface ListOptions {\n status?: IssueStatusType;\n all?: boolean;\n type?: IssueKindType;\n priority?: string;\n assignee?: string;\n label?: string[];\n parent?: string;\n spec?: string;\n deferred?: boolean;\n deferBefore?: string;\n sort?: string;\n limit?: string;\n count?: boolean;\n long?: boolean;\n pretty?: boolean;\n specs?: boolean;\n}\n\nclass ListHandler extends BaseCommand {\n async run(options: ListOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Load shared data context (dataSyncDir, mapping, config, prefix)\n const dataCtx = await loadDataContext(tbdRoot);\n let issues = await listIssues(dataCtx.dataSyncDir);\n\n // Apply filters\n issues = this.filterIssues(issues, options, dataCtx.mapping);\n\n // Sort results (with secondary sort by short ID for stable ordering)\n issues = this.sortIssues(issues, options.sort ?? 'priority', dataCtx.mapping);\n\n // Apply limit\n issues = applyLimit(issues, options.limit);\n\n // Count-only mode for testing\n if (options.count) {\n this.output.data({ count: issues.length }, () => {\n console.log(issues.length);\n });\n return;\n }\n\n const showDebug = this.ctx.debug;\n const { mapping, prefix } = dataCtx;\n\n // Format output - use short display IDs instead of internal ULIDs\n const displayIssues = issues.map((i) => ({\n id: showDebug ? formatDebugId(i.id, mapping, prefix) : formatDisplayId(i.id, mapping, prefix),\n internalId: i.id,\n parentId: i.parent_id\n ? showDebug\n ? formatDebugId(i.parent_id, mapping, prefix)\n : formatDisplayId(i.parent_id, mapping, prefix)\n : undefined,\n priority: i.priority,\n status: i.status,\n kind: i.kind,\n title: i.title,\n description: i.description ?? undefined,\n assignee: i.assignee ?? undefined,\n labels: i.labels,\n spec_path: i.spec_path ?? undefined,\n // Use internal IDs for order hints (buildIssueTree compares against internal IDs)\n child_order_hints: i.child_order_hints ?? undefined,\n }));\n\n this.output.data(displayIssues, () => {\n if (issues.length === 0) {\n console.log('No issues found');\n return;\n }\n\n const colors = this.output.getColors();\n\n if (options.specs) {\n this.renderGroupedBySpec(displayIssues, options, colors);\n } else {\n this.renderFlat(displayIssues, options, colors);\n }\n\n console.log('');\n console.log(colors.dim(`${issues.length} issue(s)`));\n });\n }\n\n private renderFlat(\n displayIssues: (IssueForDisplay & { parentId?: string; spec_path?: string })[],\n options: ListOptions,\n colors: ReturnType<typeof createColors>,\n ): void {\n if (options.pretty) {\n const tree = buildIssueTree(displayIssues);\n const lines = renderIssueTree(tree, colors, {\n long: options.long,\n maxWidth: getTerminalWidth(),\n });\n for (const line of lines) {\n console.log(line);\n }\n } else {\n console.log(formatIssueHeader(colors));\n for (const issue of displayIssues) {\n if (options.long) {\n console.log(formatIssueLong(issue, colors));\n } else {\n console.log(formatIssueLine(issue, colors));\n }\n }\n }\n }\n\n private renderGroupedBySpec(\n displayIssues: (IssueForDisplay & { parentId?: string; spec_path?: string })[],\n options: ListOptions,\n colors: ReturnType<typeof createColors>,\n ): void {\n // Group issues by spec_path\n const specGroups = new Map<string, typeof displayIssues>();\n const noSpecIssues: typeof displayIssues = [];\n\n for (const issue of displayIssues) {\n if (issue.spec_path) {\n const group = specGroups.get(issue.spec_path);\n if (group) {\n group.push(issue);\n } else {\n specGroups.set(issue.spec_path, [issue]);\n }\n } else {\n noSpecIssues.push(issue);\n }\n }\n\n // Render each spec group\n let first = true;\n for (const [specPath, groupIssues] of specGroups) {\n if (!first) {\n console.log('');\n }\n first = false;\n\n console.log(formatSpecGroupHeader(specPath, groupIssues.length, colors));\n console.log('');\n this.renderFlat(groupIssues, options, colors);\n }\n\n // Render \"No spec\" group at the end\n if (noSpecIssues.length > 0) {\n if (!first) {\n console.log('');\n }\n console.log(formatNoSpecGroupHeader(noSpecIssues.length, colors));\n console.log('');\n this.renderFlat(noSpecIssues, options, colors);\n }\n }\n\n private filterIssues(issues: Issue[], options: ListOptions, mapping: IdMapping): Issue[] {\n // Resolve parent filter to internal ID if provided\n let resolvedParentId: string \| undefined;\n if (options.parent) {\n try {\n resolvedParentId = resolveToInternalId(options.parent, mapping);\n } catch {\n // If parent ID cannot be resolved, no issues will match\n return [];\n }\n }\n\n return issues.filter((issue) => {\n // By default, exclude closed issues unless --all or --status closed\n if (!options.all && options.status !== 'closed' && issue.status === 'closed') {\n return false;\n }\n\n // Status filter\n if (options.status && issue.status !== options.status) {\n return false;\n }\n\n // Type filter\n if (options.type && issue.kind !== options.type) {\n return false;\n }\n\n // Priority filter - supports both numeric (1) and prefixed (P1) formats\n if (options.priority !== undefined) {\n const priority = parsePriority(options.priority);\n if (priority !== undefined && issue.priority !== priority) {\n return false;\n }\n }\n\n // Assignee filter\n if (options.assignee && issue.assignee !== options.assignee) {\n return false;\n }\n\n // Label filter (all must match)\n if (options.label && options.label.length > 0) {\n const hasAllLabels = options.label.every((l) => issue.labels.includes(l));\n if (!hasAllLabels) {\n return false;\n }\n }\n\n // Parent filter (compare resolved internal IDs)\n if (resolvedParentId && issue.parent_id !== resolvedParentId) {\n return false;\n }\n\n // Spec path filter (uses gradual matching)\n if (options.spec) {\n if (!issue.spec_path \|\| !matchesSpecPath(issue.spec_path, options.spec)) {\n return false;\n }\n }\n\n // Deferred filter\n if (options.deferred && issue.status !== 'deferred') {\n return false;\n }\n\n return true;\n });\n }\n\n private sortIssues(issues: Issue[], sortField: string, mapping: IdMapping): Issue[] {\n // Helper to get short ID for secondary sort\n const getShortId = (issue: Issue): string => {\n const ulid = extractUlidFromInternalId(issue.id);\n return mapping.ulidToShort.get(ulid) ?? ulid;\n };\n\n const primarySelector: (i: Issue) => number =\n sortField === 'created'\n ? (i) => new Date(i.created_at).getTime()\n : sortField === 'updated'\n ? (i) => new Date(i.updated_at).getTime()\n : (i) => i.priority;\n\n // For created/updated, reverse so newest comes first; for priority, ascending\n const primaryOrdering =\n sortField === 'created' \|\| sortField === 'updated' ? ordering.reversed : ordering.default;\n\n return [...issues].sort(\n comparisonChain<Issue>()\n .compare(primarySelector, primaryOrdering)\n .compare(getShortId, (a, b) => naturalCompare(a, b))\n .result(),\n );\n }\n}\n\nexport const listCommand = new Command('list')\n .description('List issues')\n .option('--status <status>', 'Filter: open, in_progress, blocked, deferred, closed')\n .option('--all', 'Include closed issues')\n .option('--type <type>', 'Filter: bug, feature, task, epic')\n .option('--priority <0-4>', 'Filter by priority')\n .option('--assignee <name>', 'Filter by assignee')\n .option('--label <label>', 'Filter by label (repeatable)', (val, prev: string[] = []) => [\n ...prev,\n val,\n ])\n .option('--parent <id>', 'List children of parent')\n .option(\n '--spec <path>',\n 'Filter by spec path (matches full path, partial path suffix, or filename)',\n )\n .option('--deferred', 'Show only deferred issues')\n .option('--defer-before <date>', 'Deferred before date')\n .option('--sort <field>', 'Sort by: priority, created, updated', 'priority')\n .option('--limit <n>', 'Limit results')\n .option('--count', 'Output only the count of matching issues')\n .option('--long', 'Show descriptions')\n .option('--pretty', 'Show tree view with parent-child relationships')\n .option('--specs', 'Group output by linked spec')\n .action(async (options, command) => {\n const handler = new ListHandler(command);\n await handler.run(options);\n });\n","/\n `tbd show` - Show issue details.\n \n See: tbd-design.md §4.4 Show\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { NotFoundError } from '../lib/errors.js';\nimport { loadFullContext } from '../lib/data-context.js';\nimport { readIssue } from '../../file/storage.js';\nimport { serializeIssue } from '../../file/parser.js';\nimport { formatPriority, getPriorityColor } from '../../lib/priority.js';\nimport { getStatusColor } from '../../lib/status.js';\nimport type { IssueStatusType } from '../../lib/types.js';\n\ninterface ShowOptions {\n showOrder?: boolean;\n}\n\nclass ShowHandler extends BaseCommand {\n async run(id: string, command: Command, options: ShowOptions): Promise<void> {\n // Load unified context with data and helpers\n const ctx = await loadFullContext(command);\n\n // Resolve input ID to internal ID using helper\n const internalId = ctx.resolveId(id);\n\n let issue;\n try {\n issue = await readIssue(ctx.dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Format display ID using helper (respects debug mode automatically)\n const displayId = ctx.displayId(issue.id);\n\n // Create display version with short display ID\n const displayIssue = {\n ...issue,\n displayId,\n };\n\n this.output.data(displayIssue, () => {\n const colors = this.output.getColors();\n\n // Output as YAML+Markdown format (same as storage format)\n const serialized = serializeIssue(issue);\n\n // Add some color highlighting for text output\n const lines = serialized.split('\\n');\n for (const line of lines) {\n if (line === '---') {\n console.log(colors.dim(line));\n } else if (line.startsWith('id:')) {\n console.log(`${colors.dim('id:')} ${colors.id(line.slice(4))}`);\n } else if (line.startsWith('status:')) {\n const status = line.slice(8).trim() as IssueStatusType;\n const statusColor = getStatusColor(status, colors);\n console.log(`${colors.dim('status:')} ${statusColor(status)}`);\n } else if (line.startsWith('priority:')) {\n const priority = parseInt(line.slice(10).trim(), 10);\n const priorityColor = getPriorityColor(priority, colors);\n console.log(`${colors.dim('priority:')} ${priorityColor(formatPriority(priority))}`);\n } else if (line.startsWith('title:')) {\n console.log(`${colors.dim('title:')} ${colors.bold(line.slice(7))}`);\n } else if (line.startsWith('spec_path:')) {\n console.log(`${colors.dim('spec_path:')} ${colors.id(line.slice(11))}`);\n } else if (line.startsWith('## Notes')) {\n console.log(colors.bold(line));\n } else if (line.startsWith(' - ')) {\n console.log(` - ${colors.label(line.slice(4))}`);\n } else {\n console.log(line);\n }\n }\n\n // Show child_order_hints if --show-order is specified\n if (options.showOrder) {\n console.log('');\n console.log(colors.dim('child_order_hints:'));\n if (issue.child_order_hints && issue.child_order_hints.length > 0) {\n for (const hintId of issue.child_order_hints) {\n const shortId = ctx.displayId(hintId);\n console.log(` - ${colors.id(shortId)}`);\n }\n } else {\n console.log(` ${colors.dim('(none)')}`);\n }\n }\n });\n }\n}\n\nexport const showCommand = new Command('show')\n .description('Show issue details')\n .argument('<id>', 'Issue ID')\n .option('--show-order', 'Display children ordering hints')\n .action(async (id, options, command) => {\n const handler = new ShowHandler(command);\n await handler.run(id, command, options);\n });\n","/\n `tbd update` - Update an issue.\n \n See: tbd-design.md §4.4 Update\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, ValidationError, CLIError } from '../lib/errors.js';\nimport { readIssue, writeIssue, listIssues } from '../../file/storage.js';\nimport { parseMarkdownWithFrontmatter } from '../../file/parser.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { IssueStatus, IssueKind } from '../../lib/schemas.js';\nimport { parsePriority } from '../../lib/priority.js';\nimport type { IssueStatusType, IssueKindType, PriorityType } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId, type IdMapping } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\nimport { resolveAndValidatePath, getPathErrorMessage } from '../../lib/project-paths.js';\n\ninterface UpdateOptions {\n fromFile?: string;\n title?: string;\n status?: string;\n type?: string;\n priority?: string;\n assignee?: string;\n description?: string;\n notes?: string;\n notesFile?: string;\n due?: string;\n defer?: string;\n addLabel?: string[];\n removeLabel?: string[];\n parent?: string;\n spec?: string;\n childOrder?: string;\n}\n\nclass UpdateHandler extends BaseCommand {\n async run(id: string, options: UpdateOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Parse and validate options\n const updates = await this.parseUpdates(options, mapping, tbdRoot);\n if (updates === null) return;\n\n if (this.checkDryRun('Would update issue', { id: internalId, ...updates })) {\n return;\n }\n\n // Capture old spec_path before applying updates (for propagation)\n const oldSpecPath = issue.spec_path;\n\n // Apply updates\n if (updates.title !== undefined) issue.title = updates.title;\n if (updates.status !== undefined) issue.status = updates.status;\n if (updates.kind !== undefined) issue.kind = updates.kind;\n if (updates.priority !== undefined) issue.priority = updates.priority;\n if (updates.assignee !== undefined) issue.assignee = updates.assignee;\n if (updates.description !== undefined) issue.description = updates.description;\n if (updates.notes !== undefined) issue.notes = updates.notes;\n if (updates.due_date !== undefined) issue.due_date = updates.due_date;\n if (updates.deferred_until !== undefined) issue.deferred_until = updates.deferred_until;\n if (updates.parent_id !== undefined) issue.parent_id = updates.parent_id;\n if (updates.spec_path !== undefined) issue.spec_path = updates.spec_path;\n if (updates.child_order_hints !== undefined)\n issue.child_order_hints = updates.child_order_hints;\n\n // Inherit spec_path from new parent when re-parenting without explicit --spec\n if (updates.parent_id && options.spec === undefined && !issue.spec_path) {\n try {\n const parentIssue = await readIssue(dataSyncDir, updates.parent_id);\n if (parentIssue.spec_path) {\n issue.spec_path = parentIssue.spec_path;\n }\n } catch {\n // Parent not found — skip inheritance\n }\n }\n\n // Handle full labels replacement (from --from-file)\n if (updates.labels !== undefined) {\n issue.labels = updates.labels;\n }\n\n // Handle label updates\n if (updates.addLabels && updates.addLabels.length > 0) {\n const labelsSet = new Set(issue.labels);\n for (const label of updates.addLabels) {\n labelsSet.add(label);\n }\n issue.labels = [...labelsSet];\n }\n if (updates.removeLabels && updates.removeLabels.length > 0) {\n const removeSet = new Set(updates.removeLabels);\n issue.labels = issue.labels.filter((l) => !removeSet.has(l));\n }\n\n // Update metadata\n issue.version += 1;\n issue.updated_at = now();\n\n // Save\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to update issue');\n\n // When setting a new parent, append child to parent's child_order_hints\n if (updates.parent_id) {\n try {\n const parentIssue = await readIssue(dataSyncDir, updates.parent_id);\n const hints = parentIssue.child_order_hints ?? [];\n\n // Only append if not already in hints\n if (!hints.includes(internalId)) {\n parentIssue.child_order_hints = [...hints, internalId];\n parentIssue.version += 1;\n parentIssue.updated_at = now();\n await writeIssue(dataSyncDir, parentIssue);\n }\n } catch {\n // Parent not found or other error - skip order hint update\n }\n }\n\n // Propagate spec_path to children when parent's spec changes\n if (updates.spec_path !== undefined && issue.spec_path && issue.spec_path !== oldSpecPath) {\n const allIssues = await listIssues(dataSyncDir);\n const children = allIssues.filter((i) => i.parent_id === issue.id);\n const timestamp = now();\n for (const child of children) {\n if (!child.spec_path \|\| child.spec_path === oldSpecPath) {\n child.spec_path = issue.spec_path;\n child.version += 1;\n child.updated_at = timestamp;\n await writeIssue(dataSyncDir, child);\n }\n }\n }\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n this.output.data({ id: displayId, updated: true }, () => {\n this.output.success(`Updated ${displayId}`);\n });\n }\n\n private async parseUpdates(\n options: UpdateOptions,\n mapping: IdMapping,\n tbdRoot: string,\n ): Promise<{\n title?: string;\n status?: IssueStatusType;\n kind?: IssueKindType;\n priority?: PriorityType;\n assignee?: string \| null;\n description?: string \| null;\n notes?: string \| null;\n due_date?: string \| null;\n deferred_until?: string \| null;\n parent_id?: string \| null;\n spec_path?: string \| null;\n child_order_hints?: string[] \| null;\n addLabels?: string[];\n removeLabels?: string[];\n labels?: string[];\n } \| null> {\n const updates: {\n title?: string;\n status?: IssueStatusType;\n kind?: IssueKindType;\n priority?: PriorityType;\n assignee?: string \| null;\n description?: string \| null;\n notes?: string \| null;\n due_date?: string \| null;\n deferred_until?: string \| null;\n parent_id?: string \| null;\n spec_path?: string \| null;\n child_order_hints?: string[] \| null;\n addLabels?: string[];\n removeLabels?: string[];\n labels?: string[];\n } = {};\n\n // Handle --from-file: read all mutable fields from YAML+Markdown file\n if (options.fromFile) {\n let content: string;\n try {\n content = await readFile(options.fromFile, 'utf-8');\n } catch {\n throw new CLIError(`Failed to read file: ${options.fromFile}`);\n }\n\n try {\n const { frontmatter, description, notes } = parseMarkdownWithFrontmatter(content);\n\n // Extract mutable fields from frontmatter\n if (typeof frontmatter.title === 'string') {\n updates.title = frontmatter.title;\n }\n if (typeof frontmatter.status === 'string') {\n const result = IssueStatus.safeParse(frontmatter.status);\n if (result.success) {\n updates.status = result.data;\n }\n }\n if (typeof frontmatter.kind === 'string') {\n const result = IssueKind.safeParse(frontmatter.kind);\n if (result.success) {\n updates.kind = result.data;\n }\n }\n if (typeof frontmatter.priority === 'number') {\n const priority = parsePriority(String(frontmatter.priority));\n if (priority !== undefined) {\n updates.priority = priority;\n }\n }\n if (frontmatter.assignee !== undefined) {\n updates.assignee = typeof frontmatter.assignee === 'string' ? frontmatter.assignee : null;\n }\n if (frontmatter.due_date !== undefined) {\n updates.due_date = typeof frontmatter.due_date === 'string' ? frontmatter.due_date : null;\n }\n if (frontmatter.deferred_until !== undefined) {\n updates.deferred_until =\n typeof frontmatter.deferred_until === 'string' ? frontmatter.deferred_until : null;\n }\n if (frontmatter.parent_id !== undefined) {\n updates.parent_id =\n typeof frontmatter.parent_id === 'string' ? frontmatter.parent_id : null;\n }\n if (frontmatter.spec_path !== undefined) {\n if (typeof frontmatter.spec_path === 'string' && frontmatter.spec_path) {\n // Validate and normalize the spec path from file\n try {\n const resolved = await resolveAndValidatePath(\n frontmatter.spec_path,\n tbdRoot,\n process.cwd(),\n );\n updates.spec_path = resolved.relativePath;\n } catch (error) {\n throw new ValidationError(getPathErrorMessage(error));\n }\n } else {\n updates.spec_path = null;\n }\n }\n if (Array.isArray(frontmatter.labels)) {\n updates.labels = frontmatter.labels.filter((l): l is string => typeof l === 'string');\n }\n\n // Set description and notes from body\n updates.description = description \|\| null;\n updates.notes = notes \|\| null;\n } catch (error) {\n throw new CLIError(\n `Failed to parse file: ${options.fromFile}: ${error instanceof Error ? error.message : String(error)}`,\n );\n }\n\n return updates;\n }\n\n if (options.title !== undefined) {\n if (!options.title.trim()) {\n throw new ValidationError('Title cannot be empty');\n }\n updates.title = options.title;\n }\n\n if (options.status) {\n const result = IssueStatus.safeParse(options.status);\n if (!result.success) {\n throw new ValidationError(`Invalid status: ${options.status}`);\n }\n updates.status = result.data;\n }\n\n if (options.type) {\n const result = IssueKind.safeParse(options.type);\n if (!result.success) {\n throw new ValidationError(`Invalid type: ${options.type}`);\n }\n updates.kind = result.data;\n }\n\n if (options.priority) {\n // Use shared parsePriority which accepts both \"P1\" and \"1\" formats\n const priority = parsePriority(options.priority);\n if (priority === undefined) {\n throw new ValidationError(`Invalid priority: ${options.priority}. Use P0-P4 or 0-4.`);\n }\n updates.priority = priority;\n }\n\n if (options.assignee !== undefined) {\n updates.assignee = options.assignee \|\| null;\n }\n\n if (options.description !== undefined) {\n updates.description = options.description \|\| null;\n }\n\n if (options.notes !== undefined) {\n updates.notes = options.notes \|\| null;\n }\n\n if (options.notesFile) {\n try {\n updates.notes = await readFile(options.notesFile, 'utf-8');\n } catch {\n throw new CLIError(`Failed to read notes from file: ${options.notesFile}`);\n }\n }\n\n if (options.due !== undefined) {\n updates.due_date = options.due \|\| null;\n }\n\n if (options.defer !== undefined) {\n updates.deferred_until = options.defer \|\| null;\n }\n\n if (options.parent !== undefined) {\n if (options.parent) {\n try {\n updates.parent_id = resolveToInternalId(options.parent, mapping);\n } catch {\n throw new ValidationError(`Invalid parent ID: ${options.parent}`);\n }\n } else {\n updates.parent_id = null;\n }\n }\n\n if (options.spec !== undefined) {\n if (options.spec) {\n // Non-empty spec path: validate and normalize\n try {\n const resolved = await resolveAndValidatePath(options.spec, tbdRoot, process.cwd());\n updates.spec_path = resolved.relativePath;\n } catch (error) {\n throw new ValidationError(getPathErrorMessage(error));\n }\n } else {\n // Empty string: clear the spec path (no validation needed)\n updates.spec_path = null;\n }\n }\n\n if (options.addLabel && options.addLabel.length > 0) {\n updates.addLabels = options.addLabel;\n }\n\n if (options.removeLabel && options.removeLabel.length > 0) {\n updates.removeLabels = options.removeLabel;\n }\n\n // Handle --child-order: set the ordering hints for children\n if (options.childOrder !== undefined) {\n if (options.childOrder === '' \|\| options.childOrder === '\"\"') {\n // Empty string: clear the hints\n updates.child_order_hints = null;\n } else {\n // Parse comma-separated short IDs and resolve to internal IDs\n const shortIds = options.childOrder.split(',').map((s) => s.trim());\n const internalIds: string[] = [];\n for (const shortId of shortIds) {\n if (!shortId) continue; // Skip empty strings\n try {\n const internalId = resolveToInternalId(shortId, mapping);\n internalIds.push(internalId);\n } catch {\n throw new ValidationError(`Invalid ID in --child-order: ${shortId}`);\n }\n }\n updates.child_order_hints = internalIds.length > 0 ? internalIds : null;\n }\n }\n\n return updates;\n }\n}\n\nexport const updateCommand = new Command('update')\n .description('Update an issue')\n .argument('<id>', 'Issue ID')\n .option('--from-file <path>', 'Update all fields from YAML+Markdown file')\n .option('--title <text>', 'Set title')\n .option('--status <status>', 'Set status')\n .option('--type <type>', 'Set type')\n .option('--priority <0-4>', 'Set priority')\n .option('--assignee <name>', 'Set assignee')\n .option('--description <text>', 'Set description')\n .option('--notes <text>', 'Set working notes')\n .option('--notes-file <path>', 'Set notes from file')\n .option('--due <date>', 'Set due date')\n .option('--defer <date>', 'Set deferred until date')\n .option('--add-label <label>', 'Add label', (val, prev: string[] = []) => [...prev, val])\n .option('--remove-label <label>', 'Remove label', (val, prev: string[] = []) => [...prev, val])\n .option('--parent <id>', 'Set parent')\n .option('--spec <path>', 'Set or clear spec path (empty string clears)')\n .option('--child-order <ids>', 'Set child ordering hints (comma-separated IDs)')\n .action(async (id, options, command) => {\n const handler = new UpdateHandler(command);\n await handler.run(id, options);\n });\n","/\n `tbd close` - Close an issue.\n \n See: tbd-design.md §4.4 Close\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError } from '../lib/errors.js';\nimport { readIssue, writeIssue } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\n\ninterface CloseOptions {\n reason?: string;\n}\n\nclass CloseHandler extends BaseCommand {\n async run(id: string, options: CloseOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Get display ID for output\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n // Idempotent: if already closed, succeed silently without modification\n if (issue.status === 'closed') {\n this.output.data({ id: displayId, closed: true, alreadyClosed: true }, () => {\n this.output.success(`Closed ${displayId}`);\n });\n return;\n }\n\n if (this.checkDryRun('Would close issue', { id: internalId, reason: options.reason })) {\n return;\n }\n\n // Update issue\n issue.status = 'closed';\n issue.closed_at = now();\n issue.close_reason = options.reason ?? null;\n issue.version += 1;\n issue.updated_at = now();\n\n // Save\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to close issue');\n\n this.output.data({ id: displayId, closed: true }, () => {\n this.output.success(`Closed ${displayId}`);\n });\n }\n}\n\nexport const closeCommand = new Command('close')\n .description('Close an issue')\n .argument('<id>', 'Issue ID')\n .option('--reason <text>', 'Close reason')\n .action(async (id, options, command) => {\n const handler = new CloseHandler(command);\n await handler.run(id, options);\n });\n","/\n `tbd reopen` - Reopen a closed issue.\n \n See: tbd-design.md §4.4 Reopen\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, CLIError } from '../lib/errors.js';\nimport { readIssue, writeIssue } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\n\ninterface ReopenOptions {\n reason?: string;\n}\n\nclass ReopenHandler extends BaseCommand {\n async run(id: string, options: ReopenOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Check if not closed\n if (issue.status !== 'closed') {\n throw new CLIError(`Issue ${id} is not closed (status: ${issue.status})`);\n }\n\n if (this.checkDryRun('Would reopen issue', { id: internalId, reason: options.reason })) {\n return;\n }\n\n // Update issue\n issue.status = 'open';\n issue.closed_at = null;\n issue.close_reason = null;\n issue.version += 1;\n issue.updated_at = now();\n\n // Optionally store reopen reason in notes if provided\n if (options.reason) {\n const reopenNote = `Reopened: ${options.reason}`;\n issue.notes = issue.notes ? `${issue.notes}\\n\\n${reopenNote}` : reopenNote;\n }\n\n // Save\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to reopen issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n this.output.data({ id: displayId, reopened: true }, () => {\n this.output.success(`Reopened ${displayId}`);\n });\n }\n}\n\nexport const reopenCommand = new Command('reopen')\n .description('Reopen a closed issue')\n .argument('<id>', 'Issue ID')\n .option('--reason <text>', 'Reopen reason')\n .action(async (id, options, command) => {\n const handler = new ReopenHandler(command);\n await handler.run(id, options);\n });\n","/\n `tbd ready` - List issues ready to work on.\n \n See: tbd-design.md §4.4 Ready\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { loadDataContext } from '../lib/data-context.js';\nimport { requireInit, NotInitializedError, ValidationError } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport { IssueKind } from '../../lib/schemas.js';\nimport type { Issue, IssueKindType } from '../../lib/types.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { comparisonChain } from '../../lib/comparison-chain.js';\nimport {\n formatIssueLine,\n formatIssueLong,\n formatIssueHeader,\n type IssueForDisplay,\n} from '../lib/issue-format.js';\n\ninterface ReadyOptions {\n type?: string;\n limit?: string;\n long?: boolean;\n}\n\nclass ReadyHandler extends BaseCommand {\n async run(options: ReadyOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Load data context and issues\n let issues: Issue[];\n let dataCtx;\n try {\n dataCtx = await loadDataContext(tbdRoot);\n issues = await listIssues(dataCtx.dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Build lookup map for dependency resolution\n const issueMap = new Map(issues.map((i) => [i.id, i]));\n\n // Build reverse lookup: which issues are blocked by which\n // \"blocks\" dependency means \"this issue blocks target\"\n const blockedByMap = new Map<string, string[]>();\n for (const issue of issues) {\n for (const dep of issue.dependencies) {\n if (dep.type === 'blocks') {\n const existing = blockedByMap.get(dep.target) ?? [];\n existing.push(issue.id);\n blockedByMap.set(dep.target, existing);\n }\n }\n }\n\n // Filter for ready issues\n let readyIssues = issues.filter((issue) => {\n // Must be open (not in_progress, blocked, deferred, or closed)\n if (issue.status !== 'open') return false;\n\n // Must not have an assignee\n if (issue.assignee) return false;\n\n // Must not have unresolved blocking dependencies\n const blockers = blockedByMap.get(issue.id) ?? [];\n const hasUnresolvedBlocker = blockers.some((blockerId) => {\n const blocker = issueMap.get(blockerId);\n return blocker && blocker.status !== 'closed';\n });\n if (hasUnresolvedBlocker) return false;\n\n return true;\n });\n\n // Filter by type if specified\n if (options.type) {\n const result = IssueKind.safeParse(options.type);\n if (!result.success) {\n throw new ValidationError(`Invalid type: ${options.type}`);\n }\n const kind: IssueKindType = result.data;\n readyIssues = readyIssues.filter((i) => i.kind === kind);\n }\n\n // Sort by priority (lowest number = highest priority), then by ID for determinism\n readyIssues.sort(\n comparisonChain<Issue>()\n .compare((i) => i.priority)\n .compare((i) => i.id)\n .result(),\n );\n\n // Apply limit\n readyIssues = applyLimit(readyIssues, options.limit);\n\n const { mapping, prefix } = dataCtx;\n const showDebug = this.ctx.debug;\n\n // Format output\n const outputIssues = readyIssues.map((i) => ({\n id: showDebug ? formatDebugId(i.id, mapping, prefix) : formatDisplayId(i.id, mapping, prefix),\n priority: i.priority,\n status: i.status,\n kind: i.kind,\n title: i.title,\n description: i.description,\n }));\n\n this.output.data(outputIssues, () => {\n if (outputIssues.length === 0) {\n this.output.info('No ready issues found');\n return;\n }\n\n const colors = this.output.getColors();\n console.log(formatIssueHeader(colors));\n for (const issue of outputIssues) {\n if (options.long) {\n console.log(formatIssueLong(issue as IssueForDisplay, colors));\n } else {\n console.log(formatIssueLine(issue as IssueForDisplay, colors));\n }\n }\n });\n }\n}\n\nexport const readyCommand = new Command('ready')\n .description('List issues ready to work on (open, unblocked, unclaimed)')\n .option('--type <type>', 'Filter by type')\n .option('--limit <n>', 'Limit results')\n .option('--long', 'Show descriptions')\n .action(async (options, command) => {\n const handler = new ReadyHandler(command);\n await handler.run(options);\n });\n","/\n `tbd blocked` - List blocked issues.\n \n See: tbd-design.md §4.4 Blocked\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { loadDataContext, type TbdDataContext } from '../lib/data-context.js';\nimport { requireInit, NotInitializedError } from '../lib/errors.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { listIssues } from '../../file/storage.js';\nimport type { Issue } from '../../lib/types.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { comparisonChain } from '../../lib/comparison-chain.js';\nimport {\n formatIssueLine,\n formatIssueLong,\n formatIssueHeader,\n formatIssueCompact,\n type IssueForDisplay,\n} from '../lib/issue-format.js';\n\ninterface BlockedOptions {\n limit?: string;\n long?: boolean;\n}\n\nclass BlockedHandler extends BaseCommand {\n async run(options: BlockedOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Load data context and issues\n let issues: Issue[];\n let dataCtx: TbdDataContext;\n try {\n dataCtx = await loadDataContext(tbdRoot);\n issues = await listIssues(dataCtx.dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n const { mapping, prefix } = dataCtx;\n const showDebug = this.ctx.debug;\n\n // Build lookup map for dependency resolution\n const issueMap = new Map(issues.map((i) => [i.id, i]));\n\n // Build reverse lookup: which issues are blocked by which\n // \"blocks\" dependency means \"this issue blocks target\"\n const blockedByMap = new Map<string, string[]>();\n for (const issue of issues) {\n for (const dep of issue.dependencies) {\n if (dep.type === 'blocks') {\n const existing = blockedByMap.get(dep.target) ?? [];\n existing.push(issue.id);\n blockedByMap.set(dep.target, existing);\n }\n }\n }\n\n // Find blocked issues (status=blocked OR has unresolved blocking dependencies)\n let blockedIssues: {\n issue: Issue;\n blockedBy: { id: string; issue: Issue }[];\n explicitlyBlocked?: boolean;\n }[] = [];\n\n for (const issue of issues) {\n // Skip closed issues\n if (issue.status === 'closed') continue;\n\n const unresolvedBlockers: { id: string; issue: Issue }[] = [];\n\n // Check if status is explicitly blocked\n const isExplicitlyBlocked = issue.status === 'blocked';\n\n // Check for unresolved blocking dependencies (from reverse lookup)\n const blockerIds = blockedByMap.get(issue.id) ?? [];\n for (const blockerId of blockerIds) {\n const blocker = issueMap.get(blockerId);\n if (blocker && blocker.status !== 'closed') {\n const blockerDisplayId = showDebug\n ? formatDebugId(blockerId, mapping, prefix)\n : formatDisplayId(blockerId, mapping, prefix);\n unresolvedBlockers.push({ id: blockerDisplayId, issue: blocker });\n }\n }\n\n if (isExplicitlyBlocked \|\| unresolvedBlockers.length > 0) {\n blockedIssues.push({\n issue,\n blockedBy: unresolvedBlockers,\n explicitlyBlocked: isExplicitlyBlocked && unresolvedBlockers.length === 0,\n });\n }\n }\n\n // Sort by priority\n blockedIssues.sort(\n comparisonChain<{ issue: Issue }>()\n .compare((b) => b.issue.priority)\n .compare((b) => b.issue.id)\n .result(),\n );\n\n // Apply limit\n blockedIssues = applyLimit(blockedIssues, options.limit);\n\n // Format output\n const colors = this.output.getColors();\n const outputIssues = blockedIssues.map((b) => {\n const displayId = showDebug\n ? formatDebugId(b.issue.id, mapping, prefix)\n : formatDisplayId(b.issue.id, mapping, prefix);\n return {\n id: displayId,\n priority: b.issue.priority,\n status: b.issue.status,\n kind: b.issue.kind,\n title: b.issue.title,\n description: b.issue.description,\n blockedBy: b.explicitlyBlocked\n ? ['(explicitly blocked)']\n : b.blockedBy.map((blocker) =>\n formatIssueCompact(\n {\n id: blocker.id,\n priority: blocker.issue.priority,\n status: blocker.issue.status,\n kind: blocker.issue.kind,\n title: blocker.issue.title.slice(0, 20),\n },\n colors,\n ),\n ),\n };\n });\n\n this.output.data(outputIssues, () => {\n if (outputIssues.length === 0) {\n this.output.info('No blocked issues found');\n return;\n }\n\n console.log(formatIssueHeader(colors));\n for (const issue of outputIssues) {\n if (options.long) {\n console.log(formatIssueLong(issue as IssueForDisplay, colors));\n } else {\n console.log(formatIssueLine(issue as IssueForDisplay, colors));\n }\n // Show blockers on indented line\n console.log(` ${colors.dim('blocked by:')} ${issue.blockedBy.join(', ')}`);\n }\n });\n }\n}\n\nexport const blockedCommand = new Command('blocked')\n .description('List blocked issues')\n .option('--limit <n>', 'Limit results')\n .option('--long', 'Show descriptions')\n .action(async (options, command) => {\n const handler = new BlockedHandler(command);\n await handler.run(options);\n });\n","/\n `tbd stale` - List stale issues.\n \n See: tbd-design.md §4.4 Stale\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { loadDataContext } from '../lib/data-context.js';\nimport { requireInit, NotInitializedError, ValidationError } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport { IssueStatus } from '../../lib/schemas.js';\nimport type { Issue, IssueStatusType } from '../../lib/types.js';\nimport { nowDate, parseDate } from '../../utils/time-utils.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { comparisonChain, ordering } from '../../lib/comparison-chain.js';\n\ninterface StaleOptions {\n days?: string;\n status?: string;\n limit?: string;\n}\n\nclass StaleHandler extends BaseCommand {\n async run(options: StaleOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Load data context and issues\n let issues: Issue[];\n let dataCtx;\n try {\n dataCtx = await loadDataContext(tbdRoot);\n issues = await listIssues(dataCtx.dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Parse days threshold (default: 7)\n const daysThreshold = options.days ? parseInt(options.days, 10) : 7;\n if (isNaN(daysThreshold) \|\| daysThreshold < 0) {\n throw new ValidationError('Invalid days value. Must be a positive number.');\n }\n\n // Parse status filter (default: open, in_progress)\n const allowedStatuses = new Set<IssueStatusType>();\n if (options.status) {\n const statuses = options.status.split(',').map((s) => s.trim());\n for (const s of statuses) {\n const result = IssueStatus.safeParse(s);\n if (!result.success) {\n throw new ValidationError(`Invalid status: ${s}`);\n }\n allowedStatuses.add(result.data);\n }\n } else {\n // Default: open and in_progress\n allowedStatuses.add('open');\n allowedStatuses.add('in_progress');\n }\n\n const currentTime = nowDate();\n const msPerDay = 24 60 * 60 * 1000;\n\n // Filter stale issues\n let staleIssues: { issue: Issue; daysSinceUpdate: number }[] = [];\n\n for (const issue of issues) {\n // Check status filter\n if (!allowedStatuses.has(issue.status)) continue;\n\n // Calculate days since last update\n const updatedAt = parseDate(issue.updated_at);\n if (!updatedAt) continue;\n const daysSinceUpdate = Math.floor((currentTime.getTime() - updatedAt.getTime()) / msPerDay);\n\n if (daysSinceUpdate >= daysThreshold) {\n staleIssues.push({ issue, daysSinceUpdate });\n }\n }\n\n // Sort by days since update (most stale first), then by ID for determinism\n staleIssues.sort(\n comparisonChain<{ issue: Issue; daysSinceUpdate: number }>()\n .compare((s) => s.daysSinceUpdate, ordering.reversed)\n .compare((s) => s.issue.id)\n .result(),\n );\n\n // Apply limit\n staleIssues = applyLimit(staleIssues, options.limit);\n\n const { mapping, prefix } = dataCtx;\n const showDebug = this.ctx.debug;\n\n // Format output\n const outputIssues = staleIssues.map((s) => ({\n id: showDebug\n ? formatDebugId(s.issue.id, mapping, prefix)\n : formatDisplayId(s.issue.id, mapping, prefix),\n days: s.daysSinceUpdate,\n status: s.issue.status,\n title: s.issue.title,\n }));\n\n this.output.data(outputIssues, () => {\n if (outputIssues.length === 0) {\n this.output.info(`No stale issues found (threshold: ${daysThreshold} days)`);\n return;\n }\n\n const colors = this.output.getColors();\n console.log(\n `${colors.dim('ISSUE'.padEnd(12))}${colors.dim('DAYS'.padEnd(6))}${colors.dim('STATUS'.padEnd(14))}${colors.dim('TITLE')}`,\n );\n for (const issue of outputIssues) {\n console.log(\n `${colors.id(issue.id.padEnd(12))}${String(issue.days).padEnd(6)}${issue.status.padEnd(14)}${issue.title}`,\n );\n }\n });\n }\n}\n\nexport const staleCommand = new Command('stale')\n .description('List issues not updated recently')\n .option('--days <n>', 'Days since last update (default: 7)')\n .option('--status <status>', 'Filter by status (default: open, in_progress)')\n .option('--limit <n>', 'Limit results')\n .action(async (options, command) => {\n const handler = new StaleHandler(command);\n await handler.run(options);\n });\n","/*\n `tbd label` - Label management commands.\n \n See: tbd-design.md §4.5 Label Commands\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, NotInitializedError } from '../lib/errors.js';\nimport { readIssue, writeIssue, listIssues } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\n\n// Add label\nclass LabelAddHandler extends BaseCommand {\n async run(id: string, labels: string[]): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n if (this.checkDryRun('Would add labels', { id: internalId, labels })) {\n return;\n }\n\n // Add labels (avoiding duplicates)\n const labelsSet = new Set(issue.labels);\n let added = 0;\n for (const label of labels) {\n if (!labelsSet.has(label)) {\n labelsSet.add(label);\n added++;\n }\n }\n\n if (added === 0) {\n this.output.info('All labels already present');\n return;\n }\n\n issue.labels = [...labelsSet];\n issue.version += 1;\n issue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to update issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n this.output.data({ id: displayId, addedLabels: labels }, () => {\n this.output.success(`Added labels to ${displayId}: ${labels.join(', ')}`);\n });\n }\n}\n\n// Remove label\nclass LabelRemoveHandler extends BaseCommand {\n async run(id: string, labels: string[]): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load existing issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n if (this.checkDryRun('Would remove labels', { id: internalId, labels })) {\n return;\n }\n\n // Remove labels\n const removeSet = new Set(labels);\n const originalCount = issue.labels.length;\n issue.labels = issue.labels.filter((l) => !removeSet.has(l));\n const removed = originalCount - issue.labels.length;\n\n if (removed === 0) {\n this.output.info('No matching labels found');\n return;\n }\n\n issue.version += 1;\n issue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to update issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayId = showDebug\n ? formatDebugId(issue.id, mapping, prefix)\n : formatDisplayId(issue.id, mapping, prefix);\n\n this.output.data({ id: displayId, removedLabels: labels }, () => {\n this.output.success(`Removed labels from ${displayId}: ${labels.join(', ')}`);\n });\n }\n}\n\n// List labels\nclass LabelListHandler extends BaseCommand {\n async run(): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load all issues and collect unique labels\n let issues;\n try {\n issues = await listIssues(dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Collect labels with counts\n const labelCounts = new Map<string, number>();\n for (const issue of issues) {\n for (const label of issue.labels) {\n labelCounts.set(label, (labelCounts.get(label) ?? 0) + 1);\n }\n }\n\n // Sort by count (descending), then alphabetically\n const sortedLabels = [...labelCounts.entries()].sort((a, b) => {\n if (b[1] !== a[1]) return b[1] - a[1];\n return a[0].localeCompare(b[0]);\n });\n\n const output = sortedLabels.map(([label, count]) => ({ label, count }));\n\n this.output.data(output, () => {\n if (output.length === 0) {\n this.output.info('No labels in use');\n return;\n }\n\n const colors = this.output.getColors();\n console.log(`${colors.dim('LABEL'.padEnd(24))}${colors.dim('COUNT')}`);\n for (const { label, count } of output) {\n console.log(`${colors.label(label.padEnd(24))}${count}`);\n }\n });\n }\n}\n\nconst addCommand = new Command('add')\n .description('Add labels to an issue')\n .argument('<id>', 'Issue ID')\n .argument('<labels...>', 'Labels to add')\n .action(async (id, labels, _options, command) => {\n const handler = new LabelAddHandler(command);\n await handler.run(id, labels);\n });\n\nconst removeCommand = new Command('remove')\n .description('Remove labels from an issue')\n .argument('<id>', 'Issue ID')\n .argument('<labels...>', 'Labels to remove')\n .action(async (id, labels, _options, command) => {\n const handler = new LabelRemoveHandler(command);\n await handler.run(id, labels);\n });\n\nconst listLabelCommand = new Command('list')\n .description('List all labels in use')\n .action(async (_options, command) => {\n const handler = new LabelListHandler(command);\n await handler.run();\n });\n\nexport const labelCommand = new Command('label')\n .description('Manage issue labels')\n .addCommand(addCommand)\n .addCommand(removeCommand)\n .addCommand(listLabelCommand);\n","/\n `tbd dep` - Dependency management commands.\n \n See: tbd-design.md §4.6 Dependency Commands\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, ValidationError } from '../lib/errors.js';\nimport { readIssue, writeIssue, listIssues } from '../../file/storage.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport type { Issue } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping, resolveToInternalId } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\n\n// Add dependency: \"A depends on B\" means B blocks A\nclass DependsAddHandler extends BaseCommand {\n async run(issueId: string, dependsOnId: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve both IDs to internal IDs\n // issueId = the issue that depends on something\n // dependsOnId = the issue it depends on (the blocker)\n let internalIssueId: string;\n let internalDependsOnId: string;\n try {\n internalIssueId = resolveToInternalId(issueId, mapping);\n } catch {\n throw new NotFoundError('Issue', issueId);\n }\n try {\n internalDependsOnId = resolveToInternalId(dependsOnId, mapping);\n } catch {\n throw new NotFoundError('Issue', dependsOnId);\n }\n\n // Verify issueId exists\n try {\n await readIssue(dataSyncDir, internalIssueId);\n } catch {\n throw new NotFoundError('Issue', issueId);\n }\n\n // Load the blocking issue (dependsOnId) - this is where we add the dependency\n let blockerIssue;\n try {\n blockerIssue = await readIssue(dataSyncDir, internalDependsOnId);\n } catch {\n throw new NotFoundError('Issue', dependsOnId);\n }\n\n // Check for self-reference\n if (internalIssueId === internalDependsOnId) {\n throw new ValidationError('Issue cannot depend on itself');\n }\n\n if (\n this.checkDryRun('Would add dependency', {\n issue: internalIssueId,\n dependsOn: internalDependsOnId,\n })\n ) {\n return;\n }\n\n // Check if dependency already exists (dependsOnId blocks issueId)\n const exists = blockerIssue.dependencies.some(\n (dep) => dep.type === 'blocks' && dep.target === internalIssueId,\n );\n if (exists) {\n this.output.info('Dependency already exists');\n return;\n }\n\n // Add the dependency: dependsOnId blocks issueId\n blockerIssue.dependencies.push({ type: 'blocks', target: internalIssueId });\n blockerIssue.version += 1;\n blockerIssue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, blockerIssue);\n }, 'Failed to update issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayIssueId = showDebug\n ? formatDebugId(internalIssueId, mapping, prefix)\n : formatDisplayId(internalIssueId, mapping, prefix);\n const displayDependsOnId = showDebug\n ? formatDebugId(internalDependsOnId, mapping, prefix)\n : formatDisplayId(internalDependsOnId, mapping, prefix);\n\n this.output.data({ issue: displayIssueId, dependsOn: displayDependsOnId }, () => {\n this.output.success(`${displayIssueId} now depends on ${displayDependsOnId}`);\n });\n }\n}\n\n// Remove dependency: \"A no longer depends on B\" means B no longer blocks A\nclass DependsRemoveHandler extends BaseCommand {\n async run(issueId: string, dependsOnId: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve both IDs to internal IDs\n let internalIssueId: string;\n let internalDependsOnId: string;\n try {\n internalIssueId = resolveToInternalId(issueId, mapping);\n } catch {\n throw new NotFoundError('Issue', issueId);\n }\n try {\n internalDependsOnId = resolveToInternalId(dependsOnId, mapping);\n } catch {\n throw new NotFoundError('Issue', dependsOnId);\n }\n\n // Load the blocker issue (dependsOnId) - this is where the dependency is stored\n let blockerIssue;\n try {\n blockerIssue = await readIssue(dataSyncDir, internalDependsOnId);\n } catch {\n throw new NotFoundError('Issue', dependsOnId);\n }\n\n if (\n this.checkDryRun('Would remove dependency', {\n issue: internalIssueId,\n dependsOn: internalDependsOnId,\n })\n ) {\n return;\n }\n\n // Find and remove the dependency (dependsOnId blocks issueId)\n const initialLength = blockerIssue.dependencies.length;\n blockerIssue.dependencies = blockerIssue.dependencies.filter(\n (dep) => !(dep.type === 'blocks' && dep.target === internalIssueId),\n );\n\n if (blockerIssue.dependencies.length === initialLength) {\n this.output.info('Dependency not found');\n return;\n }\n\n blockerIssue.version += 1;\n blockerIssue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, blockerIssue);\n }, 'Failed to update issue');\n\n // Use already loaded mapping for display\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const displayIssueId = showDebug\n ? formatDebugId(internalIssueId, mapping, prefix)\n : formatDisplayId(internalIssueId, mapping, prefix);\n const displayDependsOnId = showDebug\n ? formatDebugId(internalDependsOnId, mapping, prefix)\n : formatDisplayId(internalDependsOnId, mapping, prefix);\n\n this.output.data({ issue: displayIssueId, removed: displayDependsOnId }, () => {\n this.output.success(`${displayIssueId} no longer depends on ${displayDependsOnId}`);\n });\n }\n}\n\n// List dependencies\nclass DependsListHandler extends BaseCommand {\n async run(id: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load ID mapping for resolution and display\n const mapping = await loadIdMapping(dataSyncDir);\n\n // Resolve input ID to internal ID\n let internalId: string;\n try {\n internalId = resolveToInternalId(id, mapping);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load the issue\n let issue;\n try {\n issue = await readIssue(dataSyncDir, internalId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Load all issues to find reverse dependencies\n let allIssues: Issue[];\n try {\n allIssues = await listIssues(dataSyncDir);\n } catch {\n allIssues = [];\n }\n\n const showDebug = this.ctx.debug;\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n\n // Find what this issue blocks (from its dependencies)\n const blocks = issue.dependencies\n .filter((dep) => dep.type === 'blocks')\n .map((dep) =>\n showDebug\n ? formatDebugId(dep.target, mapping, prefix)\n : formatDisplayId(dep.target, mapping, prefix),\n );\n\n // Find what blocks this issue (reverse lookup)\n const blockedBy: string[] = [];\n for (const other of allIssues) {\n for (const dep of other.dependencies) {\n if (dep.type === 'blocks' && dep.target === internalId) {\n blockedBy.push(\n showDebug\n ? formatDebugId(other.id, mapping, prefix)\n : formatDisplayId(other.id, mapping, prefix),\n );\n }\n }\n }\n\n const deps = { blocks, blockedBy };\n this.output.data(deps, () => {\n const colors = this.output.getColors();\n if (deps.blocks.length > 0) {\n console.log(`${colors.bold('Blocks:')} ${deps.blocks.join(', ')}`);\n }\n if (deps.blockedBy.length > 0) {\n console.log(`${colors.bold('Blocked by:')} ${deps.blockedBy.join(', ')}`);\n }\n if (deps.blocks.length === 0 && deps.blockedBy.length === 0) {\n console.log('No dependencies');\n }\n });\n }\n}\n\nconst addCommand = new Command('add')\n .description('Add dependency (issue depends on depends-on)')\n .argument('<issue>', 'Issue ID that depends on something')\n .argument('<depends-on>', 'Issue ID that must be completed first')\n .action(async (issue, dependsOn, _options, command) => {\n const handler = new DependsAddHandler(command);\n await handler.run(issue, dependsOn);\n });\n\nconst removeCommand = new Command('remove')\n .description('Remove dependency (issue no longer depends on depends-on)')\n .argument('<issue>', 'Issue ID')\n .argument('<depends-on>', 'Issue ID it depended on')\n .action(async (issue, dependsOn, _options, command) => {\n const handler = new DependsRemoveHandler(command);\n await handler.run(issue, dependsOn);\n });\n\nconst listDepsCommand = new Command('list')\n .description('List dependencies for an issue')\n .argument('<id>', 'Issue ID')\n .action(async (id, _options, command) => {\n const handler = new DependsListHandler(command);\n await handler.run(id);\n });\n\nexport const depCommand = new Command('dep')\n .description('Manage issue dependencies')\n .addCommand(addCommand)\n .addCommand(removeCommand)\n .addCommand(listDepsCommand);\n","/\n Sync summary formatting utilities.\n \n Provides consistent formatting for sync operation results.\n /\n\n/\n Tallies for a sync direction (sent or received).\n /\nexport interface SyncTallies {\n new: number;\n updated: number;\n deleted: number;\n}\n\n/\n Full sync summary with both directions.\n /\nexport interface SyncSummary {\n sent: SyncTallies;\n received: SyncTallies;\n conflicts: number;\n /* True if push to remote failed /\n pushFailed?: boolean;\n /* Error message if push failed /\n pushError?: string;\n}\n\n/\n Create empty sync tallies.\n /\nexport function emptyTallies(): SyncTallies {\n return { new: 0, updated: 0, deleted: 0 };\n}\n\n/\n Create empty sync summary.\n /\nexport function emptySummary(): SyncSummary {\n return {\n sent: emptyTallies(),\n received: emptyTallies(),\n conflicts: 0,\n };\n}\n\n/\n Check if tallies have any non-zero values.\n /\nexport function hasTallies(tallies: SyncTallies): boolean {\n return tallies.new > 0 \|\| tallies.updated > 0 \|\| tallies.deleted > 0;\n}\n\n/\n Format tallies for display (e.g., \"1 new, 2 updated\").\n * Omits zero counts.\n /\nexport function formatTallies(tallies: SyncTallies): string {\n const parts: string[] = [];\n\n if (tallies.new > 0) {\n parts.push(`${tallies.new} new`);\n }\n if (tallies.updated > 0) {\n parts.push(`${tallies.updated} updated`);\n }\n if (tallies.deleted > 0) {\n parts.push(`${tallies.deleted} deleted`);\n }\n\n return parts.join(', ');\n}\n\n/\n Format sync summary for display.\n \n Examples:\n * - \"sent 1 new\"\n * - \"sent 2 updated, received 1 new\"\n * - \"received 3 new, 1 updated\"\n * - \"\" (empty if nothing to report - caller should show \"Already in sync\")\n /\nexport function formatSyncSummary(summary: SyncSummary): string {\n const parts: string[] = [];\n\n const sentStr = formatTallies(summary.sent);\n const receivedStr = formatTallies(summary.received);\n\n if (sentStr) {\n parts.push(`sent ${sentStr}`);\n }\n if (receivedStr) {\n parts.push(`received ${receivedStr}`);\n }\n\n if (parts.length === 0) {\n return '';\n }\n\n let result = parts.join(', ');\n\n if (summary.conflicts > 0) {\n result += ` (${summary.conflicts} conflict${summary.conflicts === 1 ? '' : 's'} resolved)`;\n }\n\n return result;\n}\n\n/\n Parse git status --porcelain output to get tallies.\n \n @param statusOutput - Output from `git status --porcelain`\n * @returns Tallies for new, updated, deleted files\n /\nexport function parseGitStatus(statusOutput: string): SyncTallies {\n const tallies = emptyTallies();\n\n if (!statusOutput \|\| statusOutput.trim() === '') {\n return tallies;\n }\n\n for (const line of statusOutput.split('\\n')) {\n if (!line) continue;\n\n const statusCode = line.slice(0, 2).trim();\n\n switch (statusCode) {\n case 'A':\n case '??':\n tallies.new++;\n break;\n case 'M':\n case 'MM':\n tallies.updated++;\n break;\n case 'D':\n tallies.deleted++;\n break;\n }\n }\n\n return tallies;\n}\n\n/\n Parse git diff --name-status output to get tallies.\n \n @param diffOutput - Output from `git diff --name-status`\n * @returns Tallies for new, updated, deleted files\n /\nexport function parseGitDiff(diffOutput: string): SyncTallies {\n const tallies = emptyTallies();\n\n if (!diffOutput \|\| diffOutput.trim() === '') {\n return tallies;\n }\n\n for (const line of diffOutput.split('\\n')) {\n if (!line) continue;\n\n const statusCode = line[0];\n\n switch (statusCode) {\n case 'A':\n tallies.new++;\n break;\n case 'M':\n tallies.updated++;\n break;\n case 'D':\n tallies.deleted++;\n break;\n }\n }\n\n return tallies;\n}\n","/\n GitHub URL utilities and content fetching with `gh` CLI fallback.\n \n Consolidates all GitHub-specific URL handling and fetching logic:\n * - GitHub blob URL → raw URL conversion\n * - Direct HTTP fetch with timeout\n * - Fallback to `gh api` on 403 errors (common in restricted environments)\n \n This module is reusable across doc-sync, doc-add, and any future code\n * that needs to fetch content from GitHub.\n /\n\nimport { execFile } from 'node:child_process';\nimport { promisify } from 'node:util';\n\nconst execFileAsync = promisify(execFile);\n\n// =============================================================================\n// GitHub URL Conversion\n// =============================================================================\n\n/\n Regular expression to match GitHub blob URLs.\n \n Matches patterns like:\n * https://github.com/{owner}/{repo}/blob/{ref}/{path}\n /\nconst GITHUB_BLOB_RE = /^https?:\\/\\/github\\.com\\/([^/]+)\\/([^/]+)\\/blob\\/([^/]+)\\/(.+)$/;\n\n/\n Regular expression to match raw.githubusercontent.com URLs.\n \n Matches patterns like:\n * https://raw.githubusercontent.com/{owner}/{repo}/{ref}/{path}\n /\nconst RAW_GITHUB_RE = /^https?:\\/\\/raw\\.githubusercontent\\.com\\/([^/]+)\\/([^/]+)\\/([^/]+)\\/(.+)$/;\n\n/\n Convert a GitHub blob URL to a raw.githubusercontent.com URL.\n \n If the URL is already a raw URL or not a GitHub blob URL, returns it unchanged.\n \n @example\n * githubBlobToRawUrl('https://github.com/org/repo/blob/main/docs/file.md')\n * // => 'https://raw.githubusercontent.com/org/repo/main/docs/file.md'\n \n @example\n * githubBlobToRawUrl('https://raw.githubusercontent.com/org/repo/main/docs/file.md')\n * // => 'https://raw.githubusercontent.com/org/repo/main/docs/file.md' (unchanged)\n /\nexport function githubBlobToRawUrl(url: string): string {\n const match = GITHUB_BLOB_RE.exec(url);\n if (!match) {\n return url;\n }\n const [, owner, repo, ref, path] = match;\n return `https://raw.githubusercontent.com/${owner}/${repo}/${ref}/${path}`;\n}\n\n/\n Check if a URL is a GitHub-hosted URL (github.com or raw.githubusercontent.com).\n /\nexport function isGitHubUrl(url: string): boolean {\n return /^https?:\\/\\/(github\\.com\|raw\\.githubusercontent\\.com)\\//.test(url);\n}\n\n/\n Parse a raw.githubusercontent.com URL into its components.\n \n @returns The parsed components, or null if not a raw GitHub URL\n /\nexport function parseRawGitHubUrl(\n url: string,\n): { owner: string; repo: string; ref: string; path: string } \| null {\n const match = RAW_GITHUB_RE.exec(url);\n if (!match) {\n return null;\n }\n return {\n owner: match[1]!,\n repo: match[2]!,\n ref: match[3]!,\n path: match[4]!,\n };\n}\n\n// =============================================================================\n// HTTP Fetching\n// =============================================================================\n\n/* Default timeout for URL fetches in milliseconds /\nconst DEFAULT_FETCH_TIMEOUT = 30000;\n\n/\n Options for fetching content.\n /\nexport interface FetchOptions {\n /* Timeout in milliseconds (default: 30000) /\n timeout?: number;\n}\n\n/\n Result of a fetch operation.\n /\nexport interface FetchResult {\n /* The fetched content /\n content: string;\n /* Whether the gh CLI was used as a fallback /\n usedGhCli: boolean;\n}\n\n/\n Fetch content from a URL via direct HTTP.\n \n @throws If the request fails or returns a non-OK status\n /\nexport async function directFetch(url: string, options?: FetchOptions): Promise<string> {\n const timeout = options?.timeout ?? DEFAULT_FETCH_TIMEOUT;\n const controller = new AbortController();\n const timer = setTimeout(() => {\n controller.abort();\n }, timeout);\n\n try {\n const response = await fetch(url, {\n signal: controller.signal,\n headers: {\n 'User-Agent': 'get-tbd/1.0',\n Accept: 'text/plain, text/markdown, /',\n },\n });\n\n if (!response.ok) {\n throw new Error(`HTTP ${response.status}: ${response.statusText}`);\n }\n\n return await response.text();\n } finally {\n clearTimeout(timer);\n }\n}\n\n// =============================================================================\n// gh CLI Fetching\n// =============================================================================\n\n/\n Fetch content from a GitHub raw URL using `gh api`.\n \n Converts raw.githubusercontent.com URLs to GitHub API content endpoints\n * and decodes the base64-encoded response.\n \n @throws If the URL is not a GitHub URL or gh CLI fails\n /\nexport async function ghCliFetch(rawUrl: string): Promise<string> {\n const parsed = parseRawGitHubUrl(rawUrl);\n\n if (parsed) {\n try {\n const { stdout } = await execFileAsync('gh', [\n 'api',\n `/repos/${parsed.owner}/${parsed.repo}/contents/${parsed.path}?ref=${parsed.ref}`,\n '--jq',\n '.content',\n '-H',\n 'Accept: application/vnd.github.v3+json',\n ]);\n\n // GitHub API returns base64-encoded content\n const base64Content = stdout.trim();\n return Buffer.from(base64Content, 'base64').toString('utf-8');\n } catch (error) {\n throw new Error(\n `Failed to fetch via gh CLI: ${error instanceof Error ? error.message : String(error)}`,\n );\n }\n }\n\n // For non-raw-GitHub URLs, attempt a direct gh api call\n try {\n const { stdout } = await execFileAsync('gh', ['api', rawUrl]);\n return stdout;\n } catch (error) {\n throw new Error(\n `Failed to fetch via gh CLI: ${error instanceof Error ? error.message : String(error)}`,\n );\n }\n}\n\n// =============================================================================\n// Combined Fetch with Fallback\n// =============================================================================\n\n/\n Fetch content from a URL, falling back to `gh` CLI on 403 errors.\n \n GitHub.com and raw.githubusercontent.com may block requests from\n * certain environments (e.g., CI runners, corporate proxies). When\n * a 403 is received, we retry using `gh api` which authenticates\n * via the user's GitHub CLI token.\n \n This function also auto-converts GitHub blob URLs to raw URLs.\n \n @returns The fetched content and whether gh CLI was used\n * @throws If both direct fetch and gh CLI fallback fail\n /\nexport async function fetchWithGhFallback(\n url: string,\n options?: FetchOptions,\n): Promise<FetchResult> {\n const rawUrl = githubBlobToRawUrl(url);\n\n // Try direct fetch first\n try {\n const content = await directFetch(rawUrl, options);\n return { content, usedGhCli: false };\n } catch (error) {\n const is403 = error instanceof Error && error.message.includes('HTTP 403');\n if (!is403) {\n throw error;\n }\n }\n\n // 403 error - try gh CLI fallback\n const content = await ghCliFetch(rawUrl);\n return { content, usedGhCli: true };\n}\n","/\n DocSync - Sync documentation files from configured sources.\n \n Syncs docs from internal bundled sources and external URLs to .tbd/docs/.\n \n See: docs/project/specs/active/plan-2026-01-26-configurable-doc-cache-sync.md\n /\n\nimport { readdir, readFile, rm, mkdir, access } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport { writeFile } from 'atomically';\nimport { fileURLToPath } from 'node:url';\n\nimport { TBD_DOCS_DIR } from '../lib/paths.js';\nimport { fetchWithGhFallback } from './github-fetch.js';\nimport { readConfig, writeConfig, updateLocalState } from './config.js';\n\n// =============================================================================\n// Types\n// =============================================================================\n\n/\n A parsed document source.\n /\nexport interface DocSource {\n /* Source type: internal bundled or external URL /\n type: 'internal' \| 'url';\n /* The source location - either a relative path or full URL /\n location: string;\n}\n\n/\n Result of a sync operation.\n /\nexport interface SyncResult {\n /* Paths of newly downloaded/copied docs /\n added: string[];\n /* Paths of updated docs (content changed) /\n updated: string[];\n /* Paths of removed docs (no longer in config) /\n removed: string[];\n /* Errors encountered during sync /\n errors: { path: string; error: string }[];\n /* Whether the sync was successful overall /\n success: boolean;\n}\n\n/\n Options for doc sync operations.\n /\nexport interface DocSyncOptions {\n /* If true, don't actually write/delete files (dry run) /\n dryRun?: boolean;\n /* If true, suppress normal output (only report errors) /\n silent?: boolean;\n}\n\n// =============================================================================\n// Constants\n// =============================================================================\n\n/* Prefix for internal bundled doc sources /\nconst INTERNAL_PREFIX = 'internal:';\n\n// =============================================================================\n// DocSync Class\n// =============================================================================\n\n/\n Syncs documentation files from configured sources.\n \n Supports:\n * - Internal bundled docs (using internal: prefix)\n * - External URLs (raw.githubusercontent.com, etc.)\n /\nexport class DocSync {\n private readonly docsDir: string;\n\n /\n Create a new DocSync instance.\n \n @param tbdRoot - The tbd project root directory (parent of .tbd/)\n * @param config - The doc_cache configuration mapping dest paths to sources\n /\n constructor(\n private readonly tbdRoot: string,\n private readonly config: Record<string, string>,\n ) {\n this.docsDir = join(tbdRoot, TBD_DOCS_DIR);\n }\n\n /\n Parse a source string into a DocSource.\n \n @example\n * parseSource('internal:shortcuts/standard/code-review-and-commit.md')\n * // => { type: 'internal', location: 'shortcuts/standard/code-review-and-commit.md' }\n \n @example\n * parseSource('https://raw.githubusercontent.com/org/repo/main/file.md')\n * // => { type: 'url', location: 'https://...' }\n /\n parseSource(source: string): DocSource {\n if (source.startsWith(INTERNAL_PREFIX)) {\n return {\n type: 'internal',\n location: source.slice(INTERNAL_PREFIX.length),\n };\n }\n\n // Anything else is treated as a URL\n return {\n type: 'url',\n location: source,\n };\n }\n\n /\n Fetch content from a source.\n \n @throws If the source cannot be fetched\n /\n async fetchContent(source: DocSource): Promise<string> {\n if (source.type === 'internal') {\n return this.fetchInternalContent(source.location);\n }\n return this.fetchUrlContent(source.location);\n }\n\n /\n Fetch content from an internal bundled doc.\n /\n private async fetchInternalContent(location: string): Promise<string> {\n const basePaths = getDocsBasePath();\n\n for (const basePath of basePaths) {\n const fullPath = join(basePath, location);\n try {\n await access(fullPath);\n return await readFile(fullPath, 'utf-8');\n } catch {\n // Try next path\n }\n }\n\n throw new Error(`Internal doc not found: ${location}`);\n }\n\n /\n Fetch content from a URL (with gh CLI fallback on 403).\n /\n private async fetchUrlContent(url: string): Promise<string> {\n const { content } = await fetchWithGhFallback(url);\n return content;\n }\n\n /\n Get the current state of the docs directory.\n * Returns a set of relative paths that exist in .tbd/docs/.\n /\n async getCurrentState(): Promise<Set<string>> {\n const paths = new Set<string>();\n\n try {\n await access(this.docsDir);\n } catch {\n // Directory doesn't exist yet\n return paths;\n }\n\n await this.scanDirectory(this.docsDir, '', paths);\n return paths;\n }\n\n /\n Recursively scan a directory and add all .md file paths to the set.\n /\n private async scanDirectory(baseDir: string, prefix: string, paths: Set<string>): Promise<void> {\n try {\n const dirEntries = await readdir(baseDir, { withFileTypes: true });\n\n for (const entry of dirEntries) {\n const relativePath = prefix ? `${prefix}/${entry.name}` : entry.name;\n\n if (entry.isDirectory()) {\n await this.scanDirectory(join(baseDir, entry.name), relativePath, paths);\n } else if (entry.isFile() && entry.name.endsWith('.md')) {\n paths.add(relativePath);\n }\n }\n } catch {\n // Directory doesn't exist or not readable\n }\n }\n\n /\n Sync all docs from config to .tbd/docs/.\n \n - Downloads/copies new docs\n * - Updates docs whose source has changed\n * - Removes docs no longer in config\n \n @param options - Sync options (dryRun, silent)\n /\n async sync(options: DocSyncOptions = {}): Promise<SyncResult> {\n const result: SyncResult = {\n added: [],\n updated: [],\n removed: [],\n errors: [],\n success: true,\n };\n\n // Get current state\n const currentPaths = await this.getCurrentState();\n const configPaths = new Set(Object.keys(this.config));\n\n // Process each doc in config\n for (const [destPath, sourceStr] of Object.entries(this.config)) {\n try {\n const source = this.parseSource(sourceStr);\n const content = await this.fetchContent(source);\n const fullPath = join(this.docsDir, destPath);\n\n // Check if file exists and compare content\n let exists = false;\n let existingContent = '';\n\n try {\n existingContent = await readFile(fullPath, 'utf-8');\n exists = true;\n } catch {\n // File doesn't exist\n }\n\n if (!exists) {\n // New file\n if (!options.dryRun) {\n await mkdir(dirname(fullPath), { recursive: true });\n await writeFile(fullPath, content);\n }\n result.added.push(destPath);\n } else if (existingContent !== content) {\n // Content changed\n if (!options.dryRun) {\n await writeFile(fullPath, content);\n }\n result.updated.push(destPath);\n }\n // else: unchanged, do nothing\n } catch (err) {\n result.errors.push({\n path: destPath,\n error: (err as Error).message,\n });\n result.success = false;\n }\n }\n\n // Remove docs not in config\n for (const existingPath of currentPaths) {\n if (!configPaths.has(existingPath)) {\n try {\n if (!options.dryRun) {\n await rm(join(this.docsDir, existingPath));\n }\n result.removed.push(existingPath);\n } catch (err) {\n result.errors.push({\n path: existingPath,\n error: `Failed to remove: ${(err as Error).message}`,\n });\n }\n }\n }\n\n return result;\n }\n\n /\n Get a status of what would change without actually making changes.\n /\n async status(): Promise<SyncResult> {\n return this.sync({ dryRun: true });\n }\n}\n\n// =============================================================================\n// Helper Functions\n// =============================================================================\n\n/\n Get base docs paths (with fallbacks for development).\n * Matches the logic in setup.ts.\n /\nfunction getDocsBasePath(): string[] {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n return [\n // Bundled location (dist/docs/)\n join(__dirname, 'docs'),\n // Development: packages/tbd/docs/\n join(__dirname, '..', '..', 'docs'),\n ];\n}\n\n/\n Generate default doc_cache config by scanning bundled docs.\n \n This creates a config entry for each .md file found in the bundled\n * docs directories (shortcuts, guidelines, templates).\n \n @returns A doc_cache config mapping destination paths to internal: sources\n /\nexport async function generateDefaultDocCacheConfig(): Promise<Record<string, string>> {\n const config: Record<string, string> = {};\n const basePaths = getDocsBasePath();\n\n // Find the first valid base path\n let docsDir: string \| null = null;\n for (const path of basePaths) {\n try {\n await access(path);\n docsDir = path;\n break;\n } catch {\n // Try next path\n }\n }\n\n if (!docsDir) {\n return config;\n }\n\n // Directories to scan\n const scanDirs = [\n { subdir: 'shortcuts/system', prefix: 'shortcuts/system' },\n { subdir: 'shortcuts/standard', prefix: 'shortcuts/standard' },\n { subdir: 'guidelines', prefix: 'guidelines' },\n { subdir: 'templates', prefix: 'templates' },\n ];\n\n for (const { subdir, prefix } of scanDirs) {\n const fullDir = join(docsDir, subdir);\n try {\n const entries = await readdir(fullDir, { withFileTypes: true });\n for (const entry of entries) {\n if (entry.isFile() && entry.name.endsWith('.md')) {\n const relativePath = `${prefix}/${entry.name}`;\n config[relativePath] = `${INTERNAL_PREFIX}${relativePath}`;\n }\n }\n } catch {\n // Directory doesn't exist, skip\n }\n }\n\n return config;\n}\n\n/\n Merge user's doc_cache config with default bundled docs.\n \n This ensures:\n * - New bundled docs from tbd updates are added to existing configs\n * - User's custom sources (URLs, etc.) are preserved\n * - User's overrides of bundled docs are respected\n \n @param userConfig - The user's existing doc_cache config (may be undefined/empty)\n * @param defaults - The default config from generateDefaultDocCacheConfig()\n * @returns Merged config with defaults as base, user config overlaid\n /\nexport function mergeDocCacheConfig(\n userConfig: Record<string, string> \| undefined,\n defaults: Record<string, string>,\n): Record<string, string> {\n // Start with defaults, overlay user config (user takes precedence)\n return {\n ...defaults,\n ...userConfig,\n };\n}\n\n/\n Check if docs are stale based on last sync time and configured hours.\n \n @param lastSyncAt - ISO timestamp of last sync (or undefined if never synced)\n * @param autoSyncHours - Hours between auto-syncs (0 = disabled)\n * @returns true if docs should be synced\n /\nexport function isDocsStale(lastSyncAt: string \| undefined, autoSyncHours: number): boolean {\n // Auto-sync disabled\n if (autoSyncHours <= 0) {\n return false;\n }\n\n // Never synced\n if (!lastSyncAt) {\n return true;\n }\n\n const lastSync = new Date(lastSyncAt).getTime();\n const now = Date.now();\n const hoursSinceSync = (now - lastSync) / (1000 60 * 60);\n\n return hoursSinceSync >= autoSyncHours;\n}\n\n// =============================================================================\n// Unified Doc Sync with Defaults\n// =============================================================================\n\n/** Prefix for internal bundled doc sources /\nconst INTERNAL_SOURCE_PREFIX = 'internal:';\n\n/\n Options for syncDocsWithDefaults.\n /\nexport interface SyncDocsOptions {\n /* If true, suppress output (for auto-sync) /\n quiet?: boolean;\n /* If true, don't write files or config (dry run for --status) /\n dryRun?: boolean;\n}\n\n/\n Result of syncDocsWithDefaults.\n /\nexport interface SyncDocsResult {\n /* Paths of newly downloaded/copied docs /\n added: string[];\n /* Paths of updated docs (content changed) /\n updated: string[];\n /* Paths of removed docs (no longer in config) /\n removed: string[];\n /* Entries removed due to missing internal sources /\n pruned: string[];\n /* Whether the config was modified (new defaults merged or stale pruned) /\n configChanged: boolean;\n /* Errors encountered during sync /\n errors: { path: string; error: string }[];\n /* Whether the sync was successful overall /\n success: boolean;\n}\n\n/\n Check if an internal bundled doc exists.\n \n @param location - The internal doc path (without 'internal:' prefix)\n * @returns true if the doc exists in any of the bundled doc paths\n /\nexport async function internalDocExists(location: string): Promise<boolean> {\n const basePaths = getDocsBasePath();\n\n for (const basePath of basePaths) {\n const fullPath = join(basePath, location);\n try {\n await access(fullPath);\n return true;\n } catch {\n // Try next path\n }\n }\n\n return false;\n}\n\n/\n Prune entries from config that point to non-existent internal sources.\n \n This handles the case where a bundled doc is removed in a tbd update -\n * the stale config entry is automatically cleaned up.\n \n @param config - The doc_cache config to prune\n * @returns Object with pruned config and list of removed entries\n /\nexport async function pruneStaleInternals(\n config: Record<string, string>,\n): Promise<{ config: Record<string, string>; pruned: string[] }> {\n const result: Record<string, string> = {};\n const pruned: string[] = [];\n\n for (const [dest, source] of Object.entries(config)) {\n if (source.startsWith(INTERNAL_SOURCE_PREFIX)) {\n const location = source.slice(INTERNAL_SOURCE_PREFIX.length);\n const exists = await internalDocExists(location);\n if (!exists) {\n pruned.push(dest);\n continue; // Don't include in result\n }\n }\n result[dest] = source;\n }\n\n return { config: result, pruned };\n}\n\n/\n Deep equality check for config objects.\n /\nfunction configsEqual(a: Record<string, string>, b: Record<string, string>): boolean {\n const keysA = Object.keys(a).sort();\n const keysB = Object.keys(b).sort();\n\n if (keysA.length !== keysB.length) {\n return false;\n }\n\n for (const key of keysA) {\n if (!Object.hasOwn(b, key) \|\| a[key] !== b[key]) {\n return false;\n }\n }\n\n return true;\n}\n\n/\n Sync docs with merged defaults and auto-pruning.\n \n This is the single entry point for all doc sync operations that need\n * to pick up new bundled docs from tbd upgrades.\n \n Steps:\n * 1. Read current config\n * 2. Generate defaults from bundled docs\n * 3. Merge: defaults as base, user config overlays\n * 4. Prune entries with missing internal sources\n * 5. Sync files to .tbd/docs/\n * 6. Write config if changed\n * 7. Update last_doc_sync_at in state\n \n @param tbdRoot - The tbd project root directory\n * @param options - Sync options (quiet, dryRun)\n * @returns Sync result with added/updated/removed/pruned counts\n /\nexport async function syncDocsWithDefaults(\n tbdRoot: string,\n options: SyncDocsOptions = {},\n): Promise<SyncDocsResult> {\n // 1. Read current config\n const config = await readConfig(tbdRoot);\n const originalFiles = config.docs_cache?.files ?? {};\n\n // 2. Generate defaults from bundled docs\n const defaults = await generateDefaultDocCacheConfig();\n\n // 3. Merge: defaults as base, user config overlays\n const merged = mergeDocCacheConfig(originalFiles, defaults);\n\n // 4. Prune entries with missing internal sources\n const { config: prunedConfig, pruned } = await pruneStaleInternals(merged);\n\n // 5. Sync files to .tbd/docs/\n const docSync = new DocSync(tbdRoot, prunedConfig);\n const syncResult = await docSync.sync({ dryRun: options.dryRun });\n\n // 6. Check if config changed\n const configChanged = !configsEqual(prunedConfig, originalFiles);\n\n // 7. Write config if changed (and not dry run)\n if (configChanged && !options.dryRun) {\n // Preserve existing lookup_path or use default\n const lookupPath = config.docs_cache?.lookup_path ?? [\n '.tbd/docs/shortcuts/system',\n '.tbd/docs/shortcuts/standard',\n ];\n config.docs_cache = {\n lookup_path: lookupPath,\n files: prunedConfig,\n };\n await writeConfig(tbdRoot, config);\n }\n\n // 8. Update state (and not dry run)\n if (!options.dryRun) {\n await updateLocalState(tbdRoot, {\n last_doc_sync_at: new Date().toISOString(),\n });\n }\n\n return {\n added: syncResult.added,\n updated: syncResult.updated,\n removed: syncResult.removed,\n pruned,\n configChanged,\n errors: syncResult.errors,\n success: syncResult.success,\n };\n}\n","/\n `tbd sync` - Synchronization commands.\n \n See: tbd-design.md §4.7 Sync Commands\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport {\n requireInit,\n NotInitializedError,\n SyncError,\n WorktreeMissingError,\n WorktreeCorruptedError,\n} from '../lib/errors.js';\nimport { readConfig } from '../../file/config.js';\nimport { listIssues, readIssue, writeIssue } from '../../file/storage.js';\nimport {\n git,\n withIsolatedIndex,\n mergeIssues,\n pushWithRetry,\n checkWorktreeHealth,\n repairWorktree,\n ensureWorktreeAttached,\n type ConflictEntry,\n type PushResult,\n} from '../../file/git.js';\nimport { resolveDataSyncDir, DATA_SYNC_DIR, WORKTREE_DIR } from '../../lib/paths.js';\nimport { join } from 'node:path';\nimport {\n type SyncSummary,\n type SyncTallies,\n emptySummary,\n emptyTallies,\n hasTallies,\n formatSyncSummary,\n parseGitStatus,\n parseGitDiff,\n} from '../../lib/sync-summary.js';\nimport { syncDocsWithDefaults, type SyncDocsResult } from '../../file/doc-sync.js';\nimport { ValidationError } from '../lib/errors.js';\nimport {\n loadIdMapping,\n saveIdMapping,\n mergeIdMappings,\n parseIdMappingFromYaml,\n} from '../../file/id-mapping.js';\n\ninterface SyncOptions {\n push?: boolean;\n pull?: boolean;\n status?: boolean;\n force?: boolean;\n fix?: boolean;\n issues?: boolean;\n docs?: boolean;\n}\n\ninterface SyncStatus {\n synced: boolean;\n localChanges: string[];\n remoteChanges: string[];\n syncBranch: string;\n remote: string;\n ahead: number;\n behind: number;\n}\n\nclass SyncHandler extends BaseCommand {\n private dataSyncDir = '';\n private tbdRoot = '';\n\n async run(options: SyncOptions): Promise<void> {\n const tbdRoot = await requireInit();\n this.tbdRoot = tbdRoot;\n\n // Validate mutually exclusive options\n // --push/--pull only apply to issues (network operations)\n if ((options.push \|\| options.pull) && options.docs) {\n throw new ValidationError('--push/--pull only work with issue sync, not --docs');\n }\n\n // Determine what to sync:\n // - If neither --issues nor --docs specified, sync both\n // - If --push or --pull specified (without --issues/--docs), sync only issues\n const hasExclusiveIssueFlag = Boolean(options.push) \|\| Boolean(options.pull);\n const hasSelectiveFlag = Boolean(options.issues) \|\| Boolean(options.docs);\n\n // Sync docs: explicit --docs, or default (no selective flags and no push/pull)\n const syncDocs = Boolean(options.docs) \|\| (!hasSelectiveFlag && !hasExclusiveIssueFlag);\n // Sync issues: explicit --issues, push/pull flags, or default (no selective flags)\n const syncIssues = Boolean(options.issues) \|\| hasExclusiveIssueFlag \|\| !hasSelectiveFlag;\n\n // STEP 1: Sync docs first (fast, local operations)\n // This ensures docs are updated even if issue sync fails\n if (syncDocs) {\n await this.syncDocs(options.status);\n\n // If only doing docs, return after doc sync\n if (!syncIssues) {\n return;\n }\n }\n\n // STEP 2: Sync issues (network operations)\n // Check worktree health before any issue sync operations\n // See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n let worktreeHealth = await checkWorktreeHealth(tbdRoot);\n if (!worktreeHealth.valid) {\n // Auto-create worktree if it's simply missing (normal for fresh clones)\n // Only require --fix for corrupted/prunable states that need repair\n if (worktreeHealth.status === 'missing') {\n // Auto-create worktree - this is the expected state on fresh clones\n await this.doRepairWorktree(tbdRoot, 'missing');\n worktreeHealth = await checkWorktreeHealth(tbdRoot);\n if (!worktreeHealth.valid) {\n throw new WorktreeCorruptedError(\n `Failed to create worktree. Status: ${worktreeHealth.status}. Run 'tbd doctor' for diagnostics.`,\n );\n }\n } else if (options.fix) {\n // Attempt repair when --fix is provided for corrupted/prunable states\n await this.doRepairWorktree(tbdRoot, worktreeHealth.status as 'prunable' \| 'corrupted');\n // Re-check health after repair\n worktreeHealth = await checkWorktreeHealth(tbdRoot);\n if (!worktreeHealth.valid) {\n throw new WorktreeCorruptedError(\n `Worktree repair failed. Status: ${worktreeHealth.status}. Run 'tbd doctor' for diagnostics.`,\n );\n }\n } else {\n // No --fix flag, throw appropriate error for corrupted/prunable states\n if (worktreeHealth.status === 'prunable') {\n throw new WorktreeMissingError(\n \"Worktree directory was deleted but git still tracks it. Run 'tbd sync --fix' or 'tbd doctor --fix' to repair.\",\n );\n }\n if (worktreeHealth.status === 'corrupted') {\n throw new WorktreeCorruptedError(\n `Worktree is corrupted: ${worktreeHealth.error ?? 'unknown error'}. Run 'tbd sync --fix' or 'tbd doctor --fix' to repair.`,\n );\n }\n }\n }\n\n this.dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load config to get sync branch\n let config;\n try {\n config = await readConfig(tbdRoot);\n } catch {\n throw new NotInitializedError('Not a tbd repository. Run `tbd init` first.');\n }\n\n const syncBranch = config.sync.branch;\n const remote = config.sync.remote;\n\n if (options.status) {\n await this.showIssueStatus(syncBranch, remote);\n return;\n }\n\n if (this.checkDryRun('Would sync repository', { syncBranch, remote })) {\n return;\n }\n\n if (options.pull) {\n await this.pullChanges(syncBranch, remote);\n } else if (options.push) {\n await this.pushChanges(syncBranch, remote);\n } else {\n // Full sync: pull then push\n await this.fullSync(syncBranch, remote, options.force);\n }\n }\n\n /\n Sync docs from bundled sources and config.\n * This is a fast, local operation (no network required).\n /\n private async syncDocs(statusOnly?: boolean): Promise<SyncDocsResult> {\n if (statusOnly) {\n // Show status without making changes\n const result = await syncDocsWithDefaults(this.tbdRoot, { dryRun: true });\n this.showDocStatus(result);\n return result;\n }\n\n const spinner = this.output.spinner('Syncing docs...');\n const result = await syncDocsWithDefaults(this.tbdRoot);\n spinner.stop();\n\n // Report results\n this.showDocSyncResult(result);\n return result;\n }\n\n /\n Show doc sync status (what would change).\n /\n private showDocStatus(result: SyncDocsResult): void {\n const colors = this.output.getColors();\n const hasChanges =\n result.added.length > 0 \|\|\n result.updated.length > 0 \|\|\n result.removed.length > 0 \|\|\n result.pruned.length > 0;\n\n if (!hasChanges) {\n this.output.success('Docs up to date');\n return;\n }\n\n console.log(colors.bold('Docs:'));\n if (result.added.length > 0) {\n console.log(` ${colors.success(`+${result.added.length}`)} new doc(s) available`);\n }\n if (result.updated.length > 0) {\n console.log(` ${colors.warn(`~${result.updated.length}`)} doc(s) to update`);\n }\n if (result.removed.length > 0) {\n console.log(` ${colors.error(`-${result.removed.length}`)} doc(s) to remove`);\n }\n if (result.pruned.length > 0) {\n console.log(` ${colors.dim(`${result.pruned.length}`)} stale config entry/entries`);\n }\n }\n\n /\n Show doc sync result after sync.\n /\n private showDocSyncResult(result: SyncDocsResult): void {\n const hasChanges =\n result.added.length > 0 \|\|\n result.updated.length > 0 \|\|\n result.removed.length > 0 \|\|\n result.pruned.length > 0;\n\n if (!hasChanges) {\n this.output.success('Docs up to date');\n return;\n }\n\n // Build summary string\n const parts: string[] = [];\n if (result.added.length > 0) {\n parts.push(`+${result.added.length}`);\n }\n if (result.updated.length > 0) {\n parts.push(`~${result.updated.length}`);\n }\n if (result.removed.length > 0) {\n parts.push(`-${result.removed.length}`);\n }\n\n if (parts.length > 0) {\n this.output.success(`Synced docs: ${parts.join(' ')} doc(s)`);\n }\n\n // Report pruned entries\n if (result.pruned.length > 0) {\n this.output.info(`Removed ${result.pruned.length} stale config entry/entries`);\n }\n\n // Report errors\n for (const err of result.errors) {\n this.output.warn(`Doc sync error: ${err.path}: ${err.error}`);\n }\n }\n\n /\n Attempt to repair an unhealthy worktree.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n /\n private async doRepairWorktree(\n tbdRoot: string,\n status: 'missing' \| 'prunable' \| 'corrupted',\n ): Promise<void> {\n const spinner = this.output.spinner(`Repairing worktree (${status})...`);\n\n try {\n // Use shared repairWorktree from git.ts\n const result = await repairWorktree(tbdRoot, status);\n\n spinner.stop();\n\n if (!result.success) {\n throw new WorktreeCorruptedError(`Failed to repair worktree: ${result.error}`);\n }\n\n if (result.backedUp) {\n this.output.info(`Corrupted worktree backed up to: ${result.backedUp}`);\n }\n this.output.success('Worktree repaired successfully');\n } catch (error) {\n spinner.stop();\n if (error instanceof WorktreeCorruptedError) throw error;\n throw new WorktreeCorruptedError(`Failed to repair worktree: ${(error as Error).message}`);\n }\n }\n\n private async showIssueStatus(syncBranch: string, remote: string): Promise<void> {\n const status = await this.getSyncStatus(syncBranch, remote);\n\n this.output.data(status, () => {\n const colors = this.output.getColors();\n\n if (status.synced) {\n this.output.success('Repository is in sync');\n return;\n }\n\n console.log(colors.bold(`Sync status: ${syncBranch} ↔ ${remote}/${syncBranch}`));\n console.log('');\n\n if (status.ahead > 0) {\n console.log(` ${colors.id(`↑ ${status.ahead}`)} commit(s) ahead (to push)`);\n }\n if (status.behind > 0) {\n console.log(` ${colors.dim(`↓ ${status.behind}`)} commit(s) behind (to pull)`);\n }\n\n if (status.localChanges.length > 0) {\n console.log('');\n console.log(colors.bold('Local changes (not yet pushed):'));\n for (const change of status.localChanges) {\n console.log(` ${change}`);\n }\n }\n\n if (status.remoteChanges.length > 0) {\n console.log('');\n console.log(colors.bold('Remote changes (not yet pulled):'));\n for (const change of status.remoteChanges) {\n console.log(` ${change}`);\n }\n }\n });\n }\n\n private async getSyncStatus(syncBranch: string, remote: string): Promise<SyncStatus> {\n const localChanges: string[] = [];\n const remoteChanges: string[] = [];\n let ahead = 0;\n let behind = 0;\n\n // Check for uncommitted changes in the worktree\n // FIX Bug 2: Previously ran git status on main branch where data-sync/ is gitignored.\n // Now check worktree status directly.\n // See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n try {\n const worktreePath = join(this.tbdRoot, WORKTREE_DIR);\n const status = await git('-C', worktreePath, 'status', '--porcelain');\n if (status) {\n for (const line of status.split('\\n')) {\n if (!line) continue;\n const statusCode = line.slice(0, 2).trim();\n const file = line.slice(3);\n if (statusCode === 'M') {\n localChanges.push(`modified: ${file}`);\n } else if (statusCode === 'A' \|\| statusCode === '??') {\n localChanges.push(`new: ${file}`);\n } else if (statusCode === 'D') {\n localChanges.push(`deleted: ${file}`);\n }\n }\n }\n } catch {\n this.output.debug('Git worktree not available');\n }\n\n // Check for remote changes\n try {\n await git('fetch', remote, syncBranch);\n\n // Count commits ahead/behind\n try {\n const aheadOutput = await git(\n 'rev-list',\n '--count',\n `${remote}/${syncBranch}..${syncBranch}`,\n );\n ahead = parseInt(aheadOutput, 10) \|\| 0;\n } catch {\n this.output.debug('Branch does not exist locally');\n }\n\n try {\n const behindOutput = await git(\n 'rev-list',\n '--count',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n behind = parseInt(behindOutput, 10) \|\| 0;\n } catch {\n this.output.debug('Remote branch does not exist');\n }\n\n // Get commit messages for remote changes\n if (behind > 0) {\n const logOutput = await git(\n 'log',\n '--oneline',\n `${syncBranch}..${remote}/${syncBranch}`,\n '--limit=10',\n );\n for (const line of logOutput.split('\\n')) {\n if (line) {\n remoteChanges.push(line);\n }\n }\n }\n } catch {\n this.output.debug('Remote not available or sync branch does not exist');\n }\n\n return {\n synced:\n localChanges.length === 0 && remoteChanges.length === 0 && ahead === 0 && behind === 0,\n localChanges,\n remoteChanges,\n syncBranch,\n remote,\n ahead,\n behind,\n };\n }\n\n private async pullChanges(syncBranch: string, remote: string): Promise<void> {\n const spinner = this.output.spinner('Pulling from remote...');\n try {\n await git('fetch', remote, syncBranch);\n\n // Get list of changed files\n let behind = 0;\n try {\n const behindOutput = await git(\n 'rev-list',\n '--count',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n behind = parseInt(behindOutput, 10) \|\| 0;\n } catch {\n this.output.debug('Branch does not exist');\n }\n\n spinner.stop();\n if (behind === 0) {\n this.output.success('Already up to date');\n return;\n }\n\n // Merge changes using isolated index\n await withIsolatedIndex(async () => {\n // Read the remote tree\n await git('read-tree', `${remote}/${syncBranch}`);\n\n // Update local branch to remote\n const remoteCommit = await git('rev-parse', `${remote}/${syncBranch}`);\n await git('update-ref', `refs/heads/${syncBranch}`, remoteCommit);\n });\n\n this.output.success(`Pulled ${behind} change(s) from ${remote}/${syncBranch}`);\n } catch (error) {\n spinner.stop();\n const msg = (error as Error).message;\n if (msg.includes('not found') \|\| msg.includes('does not exist')) {\n this.output.info(`Remote branch ${remote}/${syncBranch} does not exist yet`);\n } else {\n throw new SyncError(`Failed to pull: ${msg}`);\n }\n }\n }\n\n /\n Commit any uncommitted changes in the worktree to the sync branch.\n * This must be called before pushing to ensure changes are captured.\n \n @returns Tallies of new/updated/deleted files committed\n /\n private async commitWorktreeChanges(): Promise<SyncTallies> {\n // Use tbdRoot to derive worktree path consistently\n // FIX Bug 1: Previously used process.cwd() which fails if not in repo root\n // See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md\n const worktreePath = join(this.tbdRoot, WORKTREE_DIR);\n\n try {\n // Ensure worktree is attached to sync branch (repair old tbd repos)\n await ensureWorktreeAttached(worktreePath);\n\n // Check for uncommitted changes (untracked, modified, or deleted)\n const status = await git('-C', worktreePath, 'status', '--porcelain');\n if (!status \|\| status.trim() === '') {\n return emptyTallies(); // Nothing to commit\n }\n\n // Parse status to get tallies\n const tallies = parseGitStatus(status);\n const fileCount = tallies.new + tallies.updated + tallies.deleted;\n\n // Stage all changes\n await git('-C', worktreePath, 'add', '-A');\n\n // Commit the changes\n const timestamp = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 19);\n await git(\n '-C',\n worktreePath,\n 'commit',\n '-m',\n `tbd sync: ${timestamp} (${fileCount} file${fileCount === 1 ? '' : 's'})`,\n );\n\n return tallies;\n } catch (error) {\n // If commit fails (e.g., nothing to commit after staging), that's ok\n const msg = (error as Error).message;\n if (msg.includes('nothing to commit')) {\n return emptyTallies();\n }\n throw error;\n }\n }\n\n private async pushChanges(syncBranch: string, remote: string): Promise<void> {\n const spinner = this.output.spinner('Pushing to remote...');\n try {\n // Commit any uncommitted changes in the worktree before pushing\n const committedTallies = await this.commitWorktreeChanges();\n const committedCount =\n committedTallies.new + committedTallies.updated + committedTallies.deleted;\n if (committedCount > 0) {\n this.output.info(`Committed ${committedCount} file(s) to sync branch`);\n }\n\n // Check how many commits we're ahead of remote\n let ahead = 0;\n try {\n await git('fetch', remote, syncBranch);\n const aheadOutput = await git(\n 'rev-list',\n '--count',\n `${remote}/${syncBranch}..${syncBranch}`,\n );\n ahead = parseInt(aheadOutput, 10) \|\| 0;\n this.output.debug(`Ahead of remote by ${ahead} commit(s)`);\n } catch {\n // Remote branch doesn't exist - count all local commits\n try {\n const countOutput = await git('rev-list', '--count', syncBranch);\n ahead = parseInt(countOutput, 10) \|\| 0;\n this.output.debug(`Remote branch not found, ${ahead} local commit(s) to push`);\n } catch {\n ahead = 0;\n this.output.debug('Could not count local commits');\n }\n }\n\n if (ahead === 0) {\n spinner.stop();\n this.output.success('Already up to date');\n return;\n }\n\n // Use push with retry\n const result = await this.doPushWithRetry(syncBranch, remote);\n spinner.stop();\n\n if (result.success) {\n this.output.success(`Pushed ${ahead} commit(s) to ${remote}/${syncBranch}`);\n } else if (result.conflicts && result.conflicts.length > 0) {\n this.output.warn(\n `Push completed with ${result.conflicts.length} conflict(s) (see attic for details)`,\n );\n } else {\n throw new SyncError(`Failed to push: ${result.error}`);\n }\n } catch (error) {\n spinner.stop();\n if (error instanceof SyncError) throw error;\n throw new SyncError(`Failed to push: ${(error as Error).message}`);\n }\n }\n\n private async doPushWithRetry(syncBranch: string, remote: string): Promise<PushResult> {\n return pushWithRetry(syncBranch, remote, async () => {\n // Merge callback - called when we need to merge remote changes\n const conflicts: ConflictEntry[] = [];\n\n // Get list of issues that need merging\n const localIssues = await listIssues(this.dataSyncDir);\n\n for (const localIssue of localIssues) {\n try {\n // Try to get the remote version (use relative path for git show)\n const remoteContent = await git(\n 'show',\n `${remote}/${syncBranch}:${DATA_SYNC_DIR}/issues/${localIssue.id}.md`,\n );\n\n if (remoteContent) {\n // Parse remote issue and merge\n const remoteIssue = await readIssue(this.dataSyncDir, localIssue.id);\n const result = mergeIssues(null, localIssue, remoteIssue);\n\n // Write merged result\n await writeIssue(this.dataSyncDir, result.merged);\n conflicts.push(...result.conflicts);\n }\n } catch {\n // Issue doesn't exist remotely - no merge needed\n this.output.debug(`Issue ${localIssue.id} not on remote, no merge needed`);\n }\n }\n\n return conflicts;\n });\n }\n\n /\n Show git log --stat output in debug mode.\n * Used to display commits that were synced.\n /\n private async showGitLogDebug(range: string, label: string): Promise<void> {\n try {\n const logOutput = await git('log', '--stat', '--oneline', range);\n if (logOutput.trim()) {\n this.output.debug(`${label}:`);\n for (const line of logOutput.split('\\n')) {\n this.output.debug(` ${line}`);\n }\n }\n } catch {\n // Ignore errors - log is just for debugging\n }\n }\n\n private async fullSync(syncBranch: string, remote: string, _force?: boolean): Promise<void> {\n const spinner = this.output.spinner('Syncing with remote...');\n const summary: SyncSummary = emptySummary();\n const conflicts: ConflictEntry[] = [];\n // Use tbdRoot for consistent path resolution\n const worktreePath = join(this.tbdRoot, WORKTREE_DIR);\n\n try {\n // STEP 1: Commit local changes FIRST (before pulling)\n // This ensures local work is preserved before we incorporate remote changes.\n const committedTallies = await this.commitWorktreeChanges();\n // Add committed changes to sent tallies\n summary.sent.new += committedTallies.new;\n summary.sent.updated += committedTallies.updated;\n summary.sent.deleted += committedTallies.deleted;\n if (hasTallies(committedTallies)) {\n const count = committedTallies.new + committedTallies.updated + committedTallies.deleted;\n this.output.debug(`Committed ${count} file(s) to sync branch`);\n }\n\n // STEP 2: Fetch remote\n await git('fetch', remote, syncBranch);\n\n // Get file-level changes from remote using git diff\n let behindCommits = 0;\n try {\n const behindOutput = await git(\n 'rev-list',\n '--count',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n behindCommits = parseInt(behindOutput, 10) \|\| 0;\n this.output.debug(`Behind remote by ${behindCommits} commit(s)`);\n\n // Get file-level tallies for received changes\n if (behindCommits > 0) {\n try {\n const diffOutput = await git(\n 'diff',\n '--name-status',\n `${syncBranch}..${remote}/${syncBranch}`,\n );\n const receivedTallies = parseGitDiff(diffOutput);\n summary.received.new += receivedTallies.new;\n summary.received.updated += receivedTallies.updated;\n summary.received.deleted += receivedTallies.deleted;\n } catch {\n // If we can't get detailed diff, just track commit count\n this.output.debug('Could not get detailed diff for received changes');\n }\n }\n } catch {\n // Branch doesn't exist on remote\n this.output.debug('Remote sync branch does not exist yet');\n }\n\n // STEP 3: If remote has changes, merge them in\n if (behindCommits > 0) {\n // Track HEAD before merge for debug log\n let headBeforeMerge = '';\n try {\n headBeforeMerge = (await git('-C', worktreePath, 'rev-parse', 'HEAD')).trim();\n } catch {\n // Ignore - just won't show debug log\n }\n\n // Merge remote into local using worktree\n // This is a proper git merge that preserves both local and remote changes\n try {\n await git(\n '-C',\n worktreePath,\n 'merge',\n `${remote}/${syncBranch}`,\n '-m',\n 'tbd sync: merge remote changes',\n );\n this.output.debug(`Merged ${behindCommits} commit(s) from remote`);\n\n // Show received commits in debug mode\n if (headBeforeMerge) {\n await this.showGitLogDebug(`${headBeforeMerge}..HEAD`, 'Commits received');\n }\n } catch {\n // Merge conflict - try to resolve at file level\n this.output.info(`Merge conflict, attempting file-level resolution`);\n\n // For each conflicted issue, do field-level merge\n const localIssues = await listIssues(this.dataSyncDir);\n for (const localIssue of localIssues) {\n try {\n const remoteContent = await git(\n 'show',\n `${remote}/${syncBranch}:${DATA_SYNC_DIR}/issues/${localIssue.id}.md`,\n );\n if (remoteContent) {\n const remoteIssue = await readIssue(this.dataSyncDir, localIssue.id);\n const result = mergeIssues(null, localIssue, remoteIssue);\n await writeIssue(this.dataSyncDir, result.merged);\n conflicts.push(...result.conflicts);\n }\n } catch {\n // Issue doesn't exist remotely - keep local version\n this.output.debug(`Issue ${localIssue.id} not on remote, keeping local`);\n }\n }\n\n // Merge ids.yml (ID mappings are always additive, so we union both sides)\n try {\n const remoteIdsContent = await git(\n 'show',\n `${remote}/${syncBranch}:${DATA_SYNC_DIR}/mappings/ids.yml`,\n );\n if (remoteIdsContent) {\n const localMapping = await loadIdMapping(this.dataSyncDir);\n const remoteMapping = parseIdMappingFromYaml(remoteIdsContent);\n const mergedMapping = mergeIdMappings(localMapping, remoteMapping);\n await saveIdMapping(this.dataSyncDir, mergedMapping);\n this.output.debug(\n `Merged ID mappings: ${localMapping.shortToUlid.size} local + ${remoteMapping.shortToUlid.size} remote = ${mergedMapping.shortToUlid.size} total`,\n );\n }\n } catch (error) {\n // Remote ids.yml doesn't exist or can't be parsed - keep local\n this.output.debug(`Could not merge ids.yml: ${(error as Error).message}`);\n }\n\n // Stage resolved files and complete merge\n // Use --no-verify to bypass parent repo hooks (lefthook, husky, etc.)\n await git('-C', worktreePath, 'add', '-A');\n\n // SAFETY CHECK: Never commit files with unresolved merge conflict markers\n // This prevents the bug where ids.yml or other files get committed with\n // <<<<<<< HEAD markers still present\n const conflictCheck = await git(\n '-C',\n worktreePath,\n 'diff',\n '--cached',\n '-S<<<<<<< ',\n '--name-only',\n );\n if (conflictCheck.trim()) {\n const conflictedFiles = conflictCheck.trim().split('\\n');\n throw new SyncError(\n `Cannot commit: ${conflictedFiles.length} file(s) still have merge conflict markers:\\n` +\n conflictedFiles.map((f) => ` - ${f}`).join('\\n') +\n `\\n\\nThis is a bug in tbd sync. Please report it and manually resolve conflicts in:\\n` +\n ` ${worktreePath}`,\n );\n }\n\n try {\n await git(\n '-C',\n worktreePath,\n 'commit',\n '--no-verify',\n '-m',\n 'tbd sync: resolved merge conflicts',\n );\n } catch {\n // May fail if no conflicts needed resolving\n this.output.debug('No merge commit needed (conflicts already resolved)');\n }\n }\n }\n } catch (error) {\n // Remote not available - that's ok for first sync\n this.output.debug(`Fetch failed (may be first sync): ${(error as Error).message}`);\n }\n\n // Check how many commits we're ahead of remote (if any)\n let aheadCommits = 0;\n try {\n const aheadOutput = await git(\n 'rev-list',\n '--count',\n `${remote}/${syncBranch}..${syncBranch}`,\n );\n aheadCommits = parseInt(aheadOutput, 10) \|\| 0;\n this.output.debug(`Ahead of remote by ${aheadCommits} commit(s)`);\n } catch {\n // Remote branch doesn't exist - count all local commits on sync branch\n try {\n const countOutput = await git('rev-list', '--count', syncBranch);\n aheadCommits = parseInt(countOutput, 10) \|\| 0;\n this.output.debug(`Remote branch not found, ${aheadCommits} local commit(s) to push`);\n } catch {\n aheadCommits = 0;\n this.output.debug('Could not count local commits');\n }\n }\n\n // Push if we have commits ahead of remote\n let pushFailed = false;\n let pushError = '';\n if (aheadCommits > 0) {\n this.output.debug(`Pushing ${aheadCommits} commit(s) to remote`);\n const result = await this.doPushWithRetry(syncBranch, remote);\n if (result.conflicts) {\n conflicts.push(...result.conflicts);\n }\n if (!result.success) {\n pushFailed = true;\n pushError = result.error ?? 'Unknown push error';\n this.output.debug(`Push failed: ${pushError}`);\n } else {\n // Show pushed commits in debug mode\n await this.showGitLogDebug(`-${aheadCommits}`, 'Commits sent');\n }\n } else {\n this.output.debug('No commits to push');\n }\n\n summary.conflicts = conflicts.length;\n spinner.stop();\n\n // Report push failure - don't silently swallow it\n if (pushFailed) {\n this.output.data(\n {\n summary,\n conflicts: conflicts.length,\n pushFailed,\n pushError,\n unpushedCommits: aheadCommits,\n },\n () => {\n // Extract meaningful error from git output (look for HTTP errors, permission issues, etc.)\n let displayError = pushError;\n const httpMatch = /HTTP (\\d+)/.exec(pushError);\n const curlMatch = /curl \\d+ (.+?)(?:\\n\|$)/.exec(pushError);\n if (httpMatch) {\n displayError = `HTTP ${httpMatch[1]}${curlMatch ? ` - ${curlMatch[1]}` : ''}`;\n } else {\n // Fall back to first meaningful line (skip \"Command failed: git push...\")\n const lines = pushError.split('\\n').filter((l) => l && !l.startsWith('Command failed'));\n displayError = lines[0] ?? pushError;\n }\n this.output.error(`Push failed: ${displayError}`);\n console.log(` ${aheadCommits} commit(s) not pushed to remote.`);\n console.log(` Run 'tbd sync' to retry or 'tbd sync --status' to check status.`);\n console.log(` To preserve changes locally: tbd save --outbox`);\n },\n );\n return;\n }\n\n this.output.data({ summary, conflicts: conflicts.length }, () => {\n const summaryText = formatSyncSummary(summary);\n if (!summaryText) {\n this.output.success('Already in sync');\n } else {\n this.output.success(`Synced: ${summaryText}`);\n }\n });\n }\n}\n\nexport const syncCommand = new Command('sync')\n .description('Synchronize issues and docs (both by default)')\n .option('--issues', 'Sync only issues (not docs)')\n .option('--docs', 'Sync only docs (not issues)')\n .option('--push', 'Push local issue changes only')\n .option('--pull', 'Pull remote issue changes only')\n .option('--status', 'Show sync status')\n .option('--force', 'Force sync (overwrite conflicts)')\n .option('--fix', 'Attempt to repair unhealthy worktree before syncing')\n .action(async (options, command) => {\n const handler = new SyncHandler(command);\n await handler.run(options);\n });\n","/\n Human-readable formatting utilities for tbd CLI.\n \n Uses sindresorhus libraries for consistent, well-tested formatting:\n * - pretty-bytes: Byte sizes (1337 -> \"1.34 kB\")\n * - pretty-ms: Durations (3600000 -> \"1h\")\n /\n\nimport prettyBytes from 'pretty-bytes';\nimport prettyMs from 'pretty-ms';\n\nimport { CHARS_PER_TOKEN } from './paths.js';\n\n// Re-export for direct use when needed\nexport { prettyBytes, prettyMs };\n\n// =============================================================================\n// Token Estimation\n// =============================================================================\n\n/\n Estimate token count from text content.\n * Uses CHARS_PER_TOKEN (~3.5) for markdown/code content.\n /\nexport function estimateTokens(text: string): number {\n return Math.ceil(text.length / CHARS_PER_TOKEN);\n}\n\n/\n Format token count: \"~1.2k tok\" or \"~450 tok\"\n /\nexport function formatTokens(tokens: number): string {\n if (tokens >= 1000) {\n return `~${(tokens / 1000).toFixed(1)}k tok`;\n }\n return `~${tokens} tok`;\n}\n\n// =============================================================================\n// Size Formatting\n// =============================================================================\n\n/\n Format doc size for list display: \"(1.8 kB, ~450 tok)\"\n /\nexport function formatDocSize(sizeBytes: number, approxTokens: number): string {\n return `(${prettyBytes(sizeBytes)}, ${formatTokens(approxTokens)})`;\n}\n\n// =============================================================================\n// Time Formatting\n// =============================================================================\n\n/\n Format relative time from Date: \"2d ago\", \"3h ago\", \"5m ago\"\n * Uses compact format for concise display.\n /\nexport function formatTimeAgo(date: Date): string {\n const ms = Date.now() - date.getTime();\n if (ms < 0) return 'just now';\n if (ms < 60000) return 'just now'; // Less than 1 minute\n return `${prettyMs(ms, { compact: true })} ago`;\n}\n\n/\n Format relative time from ISO timestamp string.\n * Returns null if timestamp is invalid.\n /\nexport function formatTimestampAgo(timestamp: string \| undefined \| null): string \| null {\n if (!timestamp) return null;\n const date = new Date(timestamp);\n if (isNaN(date.getTime())) return null;\n return formatTimeAgo(date);\n}\n\n/\n Format duration in milliseconds: \"2h 15m\", \"3d 4h\"\n * Uses verbose format for clarity.\n /\nexport function formatDuration(ms: number): string {\n return prettyMs(ms, { verbose: true });\n}\n\n/\n Format duration compactly: \"2h\", \"3d\"\n * Uses compact format for tables and tight spaces.\n /\nexport function formatDurationCompact(ms: number): string {\n return prettyMs(ms, { compact: true });\n}\n","/\n `tbd search` - Search issues.\n \n See: tbd-design.md §4.8 Search Commands\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { parse as parseYaml } from 'yaml';\nimport { writeFile } from 'atomically';\n\nimport { stringifyYaml } from '../../utils/yaml-utils.js';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { applyLimit } from '../lib/limit-utils.js';\nimport { loadDataContext, type TbdDataContext } from '../lib/data-context.js';\nimport { requireInit, NotInitializedError, ValidationError } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport { IssueStatus } from '../../lib/schemas.js';\nimport type { Issue, IssueStatusType, LocalState } from '../../lib/types.js';\nimport { STATE_FILE } from '../../lib/paths.js';\nimport { formatTimestampAgo } from '../../lib/format-utils.js';\nimport { now } from '../../utils/time-utils.js';\nimport { formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { formatIssueCompact, type IssueForDisplay } from '../lib/issue-format.js';\n\n// Staleness threshold for worktree (5 minutes)\nconst STALE_THRESHOLD_MS = 5 60 * 1000;\n\ninterface SearchOptions {\n status?: string;\n limit?: string;\n noRefresh?: boolean;\n field?: string;\n caseSensitive?: boolean;\n}\n\ninterface SearchResult {\n issue: Issue;\n matchField: string;\n matchText: string;\n}\n\n/*\n Read local state file.\n /\nasync function readState(): Promise<LocalState> {\n try {\n const content = await readFile(STATE_FILE, 'utf-8');\n return parseYaml(content) as LocalState;\n } catch {\n return {};\n }\n}\n\n/\n Update local state file.\n /\nasync function updateState(updates: Partial<LocalState>): Promise<void> {\n const state = await readState();\n const newState = { ...state, ...updates };\n await writeFile(STATE_FILE, stringifyYaml(newState));\n}\n\n/\n Check if worktree is stale and needs refresh.\n /\nasync function isWorktreeStale(): Promise<boolean> {\n const state = await readState();\n if (!state.last_sync_at) {\n return true; // Never synced\n }\n\n const lastSync = new Date(state.last_sync_at).getTime();\n const now = Date.now();\n return now - lastSync > STALE_THRESHOLD_MS;\n}\n\nclass SearchHandler extends BaseCommand {\n async run(query: string, options: SearchOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Check worktree staleness and auto-refresh if needed\n if (!options.noRefresh) {\n const state = await readState();\n const stale = await isWorktreeStale();\n if (stale) {\n const lastSyncAgo = formatTimestampAgo(state.last_sync_at);\n const staleInfo = lastSyncAgo ? ` (last synced ${lastSyncAgo})` : '';\n this.output.info(`Refreshing worktree${staleInfo}...`);\n // Update state to mark as fresh (in a full implementation, would actually sync)\n await updateState({ last_sync_at: now() });\n }\n }\n\n // Load data context and issues\n let issues: Issue[];\n let dataCtx: TbdDataContext;\n try {\n dataCtx = await loadDataContext(tbdRoot);\n issues = await listIssues(dataCtx.dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Parse status filter\n let statusFilter: IssueStatusType \| null = null;\n if (options.status) {\n const result = IssueStatus.safeParse(options.status);\n if (!result.success) {\n throw new ValidationError(`Invalid status: ${options.status}`);\n }\n statusFilter = result.data;\n }\n\n // Search (case-insensitive by default)\n const caseSensitive = options.caseSensitive ?? false;\n const queryForMatch = caseSensitive ? query : query.toLowerCase();\n let results: SearchResult[] = [];\n\n for (const issue of issues) {\n // Apply status filter\n if (statusFilter && issue.status !== statusFilter) continue;\n\n // Determine which fields to search\n const searchFields = options.field\n ? [options.field]\n : ['title', 'description', 'notes', 'labels'];\n\n for (const field of searchFields) {\n const match = this.searchField(issue, field, queryForMatch, caseSensitive);\n if (match) {\n results.push(match);\n break; // Only one match per issue\n }\n }\n }\n\n // Apply limit\n results = applyLimit(results, options.limit);\n\n const { mapping, prefix } = dataCtx;\n const showDebug = this.ctx.debug;\n\n // Format output\n const output = results.map((r) => ({\n id: showDebug\n ? formatDebugId(r.issue.id, mapping, prefix)\n : formatDisplayId(r.issue.id, mapping, prefix),\n priority: r.issue.priority,\n status: r.issue.status,\n kind: r.issue.kind,\n title: r.issue.title,\n matchField: r.matchField,\n match: r.matchText,\n }));\n\n this.output.data(output, () => {\n if (output.length === 0) {\n this.output.info(`No issues matching \"${query}\"`);\n return;\n }\n\n const colors = this.output.getColors();\n console.log(`Found ${output.length} result${output.length === 1 ? '' : 's'}:\\n`);\n for (const result of output) {\n console.log(formatIssueCompact(result as IssueForDisplay, colors));\n console.log(` ${colors.dim(`[${result.matchField}]`)} ${result.match}`);\n console.log('');\n }\n });\n }\n\n private searchField(\n issue: Issue,\n field: string,\n query: string,\n caseSensitive: boolean,\n ): SearchResult \| null {\n switch (field) {\n case 'title': {\n const text = caseSensitive ? issue.title : issue.title.toLowerCase();\n if (text.includes(query)) {\n return { issue, matchField: 'title', matchText: issue.title };\n }\n break;\n }\n case 'description': {\n if (issue.description) {\n const text = caseSensitive ? issue.description : issue.description.toLowerCase();\n if (text.includes(query)) {\n const snippet = this.extractSnippet(issue.description, query, caseSensitive);\n return { issue, matchField: 'description', matchText: snippet };\n }\n }\n break;\n }\n case 'notes': {\n if (issue.notes) {\n const text = caseSensitive ? issue.notes : issue.notes.toLowerCase();\n if (text.includes(query)) {\n const snippet = this.extractSnippet(issue.notes, query, caseSensitive);\n return { issue, matchField: 'notes', matchText: snippet };\n }\n }\n break;\n }\n case 'labels': {\n for (const label of issue.labels) {\n const text = caseSensitive ? label : label.toLowerCase();\n if (text.includes(query)) {\n return { issue, matchField: 'labels', matchText: `label: ${label}` };\n }\n }\n break;\n }\n }\n return null;\n }\n\n private extractSnippet(text: string, query: string, caseSensitive: boolean): string {\n const searchText = caseSensitive ? text : text.toLowerCase();\n const index = searchText.indexOf(query);\n if (index === -1) return text.slice(0, 60);\n\n // Extract snippet around match\n const start = Math.max(0, index - 20);\n const end = Math.min(text.length, index + query.length + 40);\n let snippet = text.slice(start, end);\n\n if (start > 0) snippet = '...' + snippet;\n if (end < text.length) snippet = snippet + '...';\n\n return snippet.replace(/\\n/g, ' ');\n }\n}\n\nexport const searchCommand = new Command('search')\n .description('Search issues by text')\n .argument('<query>', 'Search query')\n .option('--status <status>', 'Filter by status')\n .option('--field <field>', 'Search specific field (title, description, notes, labels)')\n .option('--limit <n>', 'Limit results')\n .option('--no-refresh', 'Skip worktree refresh')\n .option('--case-sensitive', 'Case-sensitive search')\n .action(async (query, options, command) => {\n const handler = new SearchHandler(command);\n await handler.run(query, options);\n });\n","/\n Shared section rendering functions for CLI output.\n \n These functions ensure identical output formatting across commands that\n * share sections (status, doctor, stats). When doctor subsumes status,\n * it calls the same rendering functions to guarantee consistency.\n \n See: plan-2026-01-29-terminal-design-system.md\n /\n\nimport type { createColors } from './output.js';\nimport { ICONS, formatHeading } from './output.js';\nimport { MIN_GIT_VERSION } from '../../file/git.js';\n\n/\n Repository section data for rendering.\n /\nexport interface RepositorySectionData {\n version: string;\n workingDirectory: string;\n initialized: boolean;\n gitRepository: boolean;\n gitBranch: string \| null;\n gitVersion: string \| null;\n gitVersionSupported: boolean;\n}\n\n/\n Config section data for rendering.\n /\nexport interface ConfigSectionData {\n syncBranch: string \| null;\n remote: string \| null;\n displayPrefix: string \| null;\n}\n\n/\n Integration check result for rendering.\n /\nexport interface IntegrationCheck {\n name: string;\n installed: boolean;\n path: string;\n}\n\n/\n Statistics section data for rendering.\n /\nexport interface StatisticsSectionData {\n ready: number;\n inProgress: number;\n blocked: number;\n open: number;\n total: number;\n}\n\n/\n Render the REPOSITORY section.\n \n Used by: status, doctor\n \n Shows:\n * - tbd version\n * - Repository path\n * - Initialization status\n * - Git repository status and branch\n * - Git version (with support warning if needed)\n \n @param data - Repository data to render\n * @param colors - Color functions\n * @param options - Rendering options\n /\nexport function renderRepositorySection(\n data: RepositorySectionData,\n colors: ReturnType<typeof createColors>,\n options?: { showHeading?: boolean },\n): void {\n // Show heading if requested (doctor uses heading, status doesn't)\n if (options?.showHeading) {\n console.log(colors.bold(formatHeading('Repository')));\n }\n\n // Version line\n console.log(`${colors.bold('tbd')} v${data.version}`);\n\n // Repository path\n console.log(`Repository: ${data.workingDirectory}`);\n\n // Initialization status\n if (data.initialized) {\n console.log(` ${colors.success(ICONS.SUCCESS)} Initialized (.tbd/)`);\n } else {\n console.log(` ${colors.error(ICONS.ERROR)} Not initialized`);\n }\n\n // Git repository status\n if (data.gitRepository) {\n const branchInfo = data.gitBranch ? ` (${data.gitBranch})` : '';\n console.log(` ${colors.success(ICONS.SUCCESS)} Git repository${branchInfo}`);\n\n // Git version\n if (data.gitVersion) {\n const versionIcon = data.gitVersionSupported\n ? colors.success(ICONS.SUCCESS)\n : colors.warn(ICONS.WARN);\n const versionNote = data.gitVersionSupported\n ? ''\n : ` ${colors.dim(`(requires ${MIN_GIT_VERSION}+)`)}`;\n console.log(` ${versionIcon} Git ${data.gitVersion}${versionNote}`);\n }\n } else {\n console.log(` ${colors.error(ICONS.ERROR)} Git repository not found`);\n }\n}\n\n/\n Render the CONFIG section (sync branch, remote, prefix).\n \n Used by: status, doctor\n \n Shows key-value pairs with dim keys.\n \n @param data - Config data to render\n * @param colors - Color functions\n /\nexport function renderConfigSection(\n data: ConfigSectionData,\n colors: ReturnType<typeof createColors>,\n): void {\n if (!data.syncBranch && !data.remote && !data.displayPrefix) {\n return;\n }\n\n console.log('');\n\n if (data.syncBranch) {\n console.log(`${colors.dim('Sync branch:')} ${data.syncBranch}`);\n }\n if (data.remote) {\n console.log(`${colors.dim('Remote:')} ${data.remote}`);\n }\n if (data.displayPrefix) {\n console.log(`${colors.dim('ID prefix:')} ${data.displayPrefix}-`);\n }\n}\n\n/\n Render the INTEGRATIONS section.\n \n Used by: status, doctor\n \n Shows diagnostic lines for each integration check.\n \n @param checks - Array of integration checks\n * @param colors - Color functions\n * @returns Whether any integrations are missing (for follow-up suggestions)\n /\nexport function renderIntegrationsSection(\n checks: IntegrationCheck[],\n colors: ReturnType<typeof createColors>,\n): boolean {\n console.log('');\n console.log(colors.bold(formatHeading('Integrations')));\n\n let hasMissing = false;\n\n for (const check of checks) {\n const icon = check.installed ? colors.success(ICONS.SUCCESS) : colors.dim(ICONS.ERROR);\n const pathDim = colors.dim(`(${check.path})`);\n console.log(` ${icon} ${check.name} ${pathDim}`);\n\n if (!check.installed) {\n hasMissing = true;\n }\n }\n\n return hasMissing;\n}\n\n/\n Render the STATISTICS section.\n \n Used by: stats, doctor\n \n Shows aligned statistic block with labels and values.\n \n @param data - Statistics data to render\n * @param colors - Color functions\n * @param options - Rendering options\n /\nexport function renderStatisticsSection(\n data: StatisticsSectionData,\n colors: ReturnType<typeof createColors>,\n options?: { showHeading?: boolean },\n): void {\n if (options?.showHeading !== false) {\n console.log('');\n console.log(colors.bold(formatHeading('Statistics')));\n }\n\n // Calculate padding for alignment\n const labels = ['Ready', 'In progress', 'Blocked', 'Open', 'Total'];\n const maxLabelLen = Math.max(...labels.map((l) => l.length));\n\n const formatLine = (label: string, value: number): string => {\n const padding = ' '.repeat(maxLabelLen - label.length + 1);\n return ` ${label}:${padding}${value}`;\n };\n\n console.log(formatLine('Ready', data.ready));\n console.log(formatLine('In progress', data.inProgress));\n console.log(formatLine('Blocked', data.blocked));\n console.log(formatLine('Open', data.open));\n console.log(formatLine('Total', data.total));\n}\n\n/\n Render a warning block about beads coexistence.\n \n Used by: status\n \n @param colors - Color functions\n /\nexport function renderBeadsWarning(colors: ReturnType<typeof createColors>): void {\n console.log('');\n console.log(`${colors.warn(ICONS.WARN)} Beads directory detected alongside tbd`);\n console.log('This may cause confusion for AI agents.');\n console.log(`Run ${colors.bold('tbd setup beads --disable')} for migration options`);\n}\n\n/\n Render worktree status line.\n \n Used by: status\n \n @param path - Worktree path\n * @param healthy - Whether worktree is healthy\n * @param colors - Color functions\n /\nexport function renderWorktreeStatus(\n path: string,\n healthy: boolean,\n colors: ReturnType<typeof createColors>,\n): void {\n console.log('');\n if (healthy) {\n console.log(`${colors.dim('Worktree:')} ${path} (healthy)`);\n } else {\n console.log(`${colors.warn('Worktree:')} ${path} (${colors.error('unhealthy')})`);\n console.log(' Run: tbd doctor --fix');\n }\n}\n\n/\n Render footer with command suggestions.\n \n Used by: status, doctor, stats\n \n @param suggestions - Array of {command, description} pairs\n * @param colors - Color functions\n /\nexport function renderFooter(\n suggestions: { command: string; description: string }[],\n colors: ReturnType<typeof createColors>,\n): void {\n console.log('');\n\n if (suggestions.length === 0) {\n return;\n }\n\n const parts = suggestions.map((s) => `${colors.bold(`'${s.command}'`)} for ${s.description}`);\n\n if (parts.length === 1) {\n console.log(`Use ${parts[0]}.`);\n } else {\n console.log(`Use ${parts.join(', ')}.`);\n }\n}\n","/\n Centralized path constants and utilities for coding agent integrations.\n \n IMPORTANT: All tbd integration files (hooks, settings, skills) are installed\n * to PROJECT-LOCAL directories (.claude/, AGENTS.md) ONLY. We do NOT install to\n * global/user directories (~/.claude/).\n \n This file defines all path constants in one place to:\n * 1. Ensure consistency across the codebase\n * 2. Make the project-local policy explicit and auditable\n * 3. Simplify future changes to path conventions\n /\n\nimport { join } from 'node:path';\nimport { homedir } from 'node:os';\n\n// =============================================================================\n// Claude Code Integration Paths (project-local)\n// =============================================================================\n\n/\n Relative path to Claude Code settings file from project root.\n * This is where hooks are configured.\n /\nexport const CLAUDE_SETTINGS_REL = '.claude/settings.json';\n\n/\n Relative path to Claude Code directory from project root.\n /\nexport const CLAUDE_DIR_REL = '.claude';\n\n/\n Relative path to Claude Code scripts directory from project root.\n /\nexport const CLAUDE_SCRIPTS_DIR_REL = '.claude/scripts';\n\n/\n Relative path to Claude Code hooks directory from project root.\n /\nexport const CLAUDE_HOOKS_DIR_REL = '.claude/hooks';\n\n/\n Relative path to tbd skill file from project root.\n /\nexport const CLAUDE_SKILL_REL = '.claude/skills/tbd/SKILL.md';\n\n/\n Relative path to tbd session script from project root.\n /\nexport const TBD_SESSION_SCRIPT_REL = '.claude/scripts/tbd-session.sh';\n\n/\n Relative path to tbd closing reminder hook script from project root.\n /\nexport const TBD_CLOSING_REMINDER_REL = '.claude/hooks/tbd-closing-reminder.sh';\n\n/\n Relative path to gh CLI ensure script from project root.\n /\nexport const GH_CLI_SCRIPT_REL = '.claude/scripts/ensure-gh-cli.sh';\n\n// =============================================================================\n// Codex / AGENTS.md Integration Paths (project-local)\n// =============================================================================\n\n/\n Relative path to AGENTS.md file from project root.\n * Used by Codex, Factory.ai, Cursor (v1.6+), and other compatible tools.\n /\nexport const AGENTS_MD_REL = 'AGENTS.md';\n\n// =============================================================================\n// Global Paths (for detection only - NOT for installation)\n// =============================================================================\n\n/\n Global Claude Code directory in user's home.\n * Used ONLY for detecting if Claude Code is installed (for agent detection).\n * All installations are project-local.\n /\nexport const GLOBAL_CLAUDE_DIR = join(homedir(), '.claude');\n\n// =============================================================================\n// Path Resolution Utilities\n// =============================================================================\n\n/\n Get project-local Claude Code paths.\n \n @param projectRoot - The project root directory (containing .tbd/)\n * @returns Object with all Claude Code paths resolved to absolute paths\n /\nexport function getClaudePaths(projectRoot: string) {\n return {\n /* .claude/ directory /\n dir: join(projectRoot, CLAUDE_DIR_REL),\n /* .claude/settings.json /\n settings: join(projectRoot, CLAUDE_SETTINGS_REL),\n /* .claude/scripts/ directory /\n scriptsDir: join(projectRoot, CLAUDE_SCRIPTS_DIR_REL),\n /* .claude/hooks/ directory /\n hooksDir: join(projectRoot, CLAUDE_HOOKS_DIR_REL),\n /* .claude/skills/tbd/SKILL.md /\n skill: join(projectRoot, CLAUDE_SKILL_REL),\n /* .claude/scripts/tbd-session.sh /\n sessionScript: join(projectRoot, TBD_SESSION_SCRIPT_REL),\n /* .claude/hooks/tbd-closing-reminder.sh /\n closingReminder: join(projectRoot, TBD_CLOSING_REMINDER_REL),\n /* .claude/scripts/ensure-gh-cli.sh /\n ghCliScript: join(projectRoot, GH_CLI_SCRIPT_REL),\n };\n}\n\n/\n Get project-local Codex/AGENTS.md path.\n \n @param projectRoot - The project root directory\n * @returns Absolute path to AGENTS.md\n /\nexport function getAgentsMdPath(projectRoot: string): string {\n return join(projectRoot, AGENTS_MD_REL);\n}\n\n// =============================================================================\n// Display Paths (for user-facing output)\n// =============================================================================\n\n/\n Display path for Claude Code settings in status/doctor output.\n /\nexport const CLAUDE_SETTINGS_DISPLAY = './.claude/settings.json';\n\n/\n Display path for AGENTS.md in status/doctor output.\n /\nexport const AGENTS_MD_DISPLAY = './AGENTS.md';\n","/\n Workspace operations for sync failure recovery, backups, and bulk editing.\n \n Workspaces are directories under .tbd/workspaces/ that store issue data.\n * They mirror the data-sync directory structure:\n * .tbd/workspaces/{name}/\n * issues/\n * mappings/\n * attic/\n \n See: plan-2026-01-30-workspace-sync-alt.md\n /\n\nimport { mkdir, readdir, rm, stat } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport { writeFile } from 'atomically';\n\nimport { stringifyYaml } from '../utils/yaml-utils.js';\n\nimport { listIssues, writeIssue, readIssue } from './storage.js';\nimport { parseIssue } from './parser.js';\nimport { mergeIssues, deepEqual, git, type ConflictEntry } from './git.js';\nimport { loadIdMapping, saveIdMapping, addIdMapping } from './id-mapping.js';\nimport {\n WORKSPACES_DIR,\n getWorkspaceDir,\n isValidWorkspaceName,\n DATA_SYNC_DIR,\n} from '../lib/paths.js';\nimport { extractUlidFromInternalId } from '../lib/ids.js';\nimport { now } from '../utils/time-utils.js';\nimport type { AtticEntry, Issue } from '../lib/types.js';\n\n/\n Options for saveToWorkspace.\n * One of workspace, dir, or outbox must be specified.\n /\nexport interface SaveOptions {\n /* Named workspace under .tbd/workspaces/ /\n workspace?: string;\n /* Arbitrary directory path /\n dir?: string;\n /* Shortcut for --workspace=outbox --updates-only /\n outbox?: boolean;\n /* Only save issues modified since last sync /\n updatesOnly?: boolean;\n}\n\n/\n Result from saveToWorkspace operation.\n /\nexport interface SaveResult {\n /* Number of issues saved /\n saved: number;\n /* Number of conflicts (went to attic) /\n conflicts: number;\n /* Target directory where issues were saved /\n targetDir: string;\n /* Total issues in source before filtering (for informational messages) /\n totalSource: number;\n /* Whether filtering was applied (updatesOnly or outbox) /\n filtered: boolean;\n}\n\n/\n Options for importFromWorkspace.\n * One of workspace, dir, or outbox must be specified.\n /\nexport interface ImportOptions {\n /* Named workspace under .tbd/workspaces/ /\n workspace?: string;\n /* Arbitrary directory path /\n dir?: string;\n /* Shortcut for --workspace=outbox --clear-on-success /\n outbox?: boolean;\n /* Delete workspace after successful import /\n clearOnSuccess?: boolean;\n}\n\n/\n Result from importFromWorkspace operation.\n /\nexport interface ImportResult {\n /* Number of issues imported /\n imported: number;\n /* Number of conflicts (went to attic) /\n conflicts: number;\n /* Source directory where issues were imported from /\n sourceDir: string;\n /* Whether the source was deleted after import /\n cleared: boolean;\n}\n\n/\n Compare local issues with remote issues and return only those that are new or modified.\n \n An issue is considered \"updated\" if:\n * - It doesn't exist in the remote (new issue)\n * - Its content differs from the remote version (modified issue)\n \n @param localIssues - Issues from the local worktree\n * @param remoteIssues - Issues from the remote tbd-sync branch\n * @returns Issues that are new or modified compared to remote\n /\nexport function getUpdatedIssues(localIssues: Issue[], remoteIssues: Issue[]): Issue[] {\n // Build a map of remote issues by ID for quick lookup\n const remoteById = new Map<string, Issue>();\n for (const issue of remoteIssues) {\n remoteById.set(issue.id, issue);\n }\n\n // Filter local issues to only those that are new or different\n return localIssues.filter((local) => {\n const remote = remoteById.get(local.id);\n\n // New issue - not in remote\n if (!remote) {\n return true;\n }\n\n // Modified issue - content differs from remote\n return !deepEqual(local, remote);\n });\n}\n\n/\n Ensure a directory exists.\n /\nasync function ensureDir(dir: string): Promise<void> {\n await mkdir(dir, { recursive: true });\n}\n\n/\n Read issues from a git ref (e.g., origin/tbd-sync).\n \n @param baseDir - The base directory of the git repo\n * @param remote - The remote name (e.g., 'origin')\n * @param branch - The branch name (e.g., 'tbd-sync')\n * @returns Array of issues from the remote ref\n /\nasync function readRemoteIssues(baseDir: string, remote: string, branch: string): Promise<Issue[]> {\n const ref = `${remote}/${branch}`;\n const issuesPath = `${DATA_SYNC_DIR}/issues`;\n\n // List all issue files from the remote ref\n let fileList: string;\n try {\n fileList = await git('-C', baseDir, 'ls-tree', '-r', '--name-only', ref, issuesPath);\n } catch {\n // Remote branch doesn't exist or has no issues\n return [];\n }\n\n const issueFiles = fileList\n .trim()\n .split('\\n')\n .filter((f) => f.endsWith('.md'));\n const issues: Issue[] = [];\n\n for (const filepath of issueFiles) {\n try {\n // Read file content from the remote ref\n const content = await git('-C', baseDir, 'show', `${ref}:${filepath}`);\n const issue = parseIssue(content);\n issues.push(issue);\n } catch {\n // Skip files that can't be parsed\n }\n }\n\n return issues;\n}\n\n/\n Convert ConflictEntry to AtticEntry format and save to workspace attic.\n /\nasync function saveConflictToAttic(\n atticDir: string,\n conflict: ConflictEntry,\n winnerSource: 'local' \| 'remote',\n): Promise<void> {\n const timestamp = now();\n\n // Convert lost_value to string - handle objects, primitives, and nullish\n const lostValueStr =\n conflict.lost_value == null\n ? ''\n : typeof conflict.lost_value === 'object'\n ? JSON.stringify(conflict.lost_value)\n : JSON.stringify(conflict.lost_value);\n\n const entry: AtticEntry = {\n entity_id: conflict.issue_id,\n timestamp,\n field: conflict.field,\n lost_value: lostValueStr,\n winner_source: winnerSource,\n loser_source: winnerSource === 'local' ? 'remote' : 'local',\n context: {\n local_version: conflict.local_version,\n remote_version: conflict.remote_version,\n local_updated_at: timestamp,\n remote_updated_at: timestamp,\n },\n };\n\n // Create filename: {entity_id}_{timestamp}_{field}.yml\n const safeTimestamp = timestamp.replace(/:/g, '-');\n const filename = `${conflict.issue_id}_${safeTimestamp}_${conflict.field}.yml`;\n const filepath = join(atticDir, filename);\n\n // Uses default options which include sortMapEntries: true\n const content = stringifyYaml(entry);\n await writeFile(filepath, content);\n}\n\n/\n Get the target/source directory for workspace operations.\n /\nfunction resolveWorkspaceDir(\n tbdRoot: string,\n options: { workspace?: string; dir?: string; outbox?: boolean },\n): string {\n if (options.dir) {\n return options.dir;\n }\n\n const workspaceName = options.outbox ? 'outbox' : options.workspace;\n if (!workspaceName) {\n throw new Error('One of --workspace, --dir, or --outbox is required');\n }\n\n if (!isValidWorkspaceName(workspaceName)) {\n throw new Error(`Invalid workspace name: ${workspaceName}`);\n }\n\n return join(tbdRoot, getWorkspaceDir(workspaceName));\n}\n\n/\n Get the target directory for save operation.\n * @deprecated Use resolveWorkspaceDir instead\n /\nfunction getTargetDir(tbdRoot: string, options: SaveOptions): string {\n return resolveWorkspaceDir(tbdRoot, options);\n}\n\n/\n Save issues from data-sync directory to a workspace or directory.\n \n Uses mergeIssues() for proper conflict detection when an issue exists\n * in both source (worktree) and target (workspace). Conflicts are saved\n * to the workspace's attic.\n \n @param tbdRoot - The root directory of the tbd project\n * @param dataSyncDir - The data-sync directory containing source issues\n * @param options - Save options (workspace name, directory, or outbox)\n * @returns Save result with counts\n /\nexport async function saveToWorkspace(\n tbdRoot: string,\n dataSyncDir: string,\n options: SaveOptions,\n): Promise<SaveResult> {\n const targetDir = getTargetDir(tbdRoot, options);\n\n // Create target directory structure\n const atticDir = join(targetDir, 'attic');\n\n await ensureDir(join(targetDir, 'issues'));\n await ensureDir(join(targetDir, 'mappings'));\n await ensureDir(atticDir);\n\n // List all issues in source (worktree)\n const allSourceIssues = await listIssues(dataSyncDir);\n const totalSource = allSourceIssues.length;\n let sourceIssues = allSourceIssues;\n\n // Filter to only updated issues if requested\n const isUpdatesOnly = options.updatesOnly ?? options.outbox;\n if (isUpdatesOnly) {\n try {\n // Fetch and compare with remote tbd-sync\n await git('-C', tbdRoot, 'fetch', 'origin', 'tbd-sync');\n const remoteIssues = await readRemoteIssues(tbdRoot, 'origin', 'tbd-sync');\n sourceIssues = getUpdatedIssues(allSourceIssues, remoteIssues);\n } catch {\n // If fetch fails (offline, remote doesn't exist, etc.), save all issues\n // This is the fallback behavior mentioned in the spec\n }\n }\n\n let saved = 0;\n let conflicts = 0;\n\n // Save each issue to target, merging if needed\n for (const sourceIssue of sourceIssues) {\n // Check if issue already exists in workspace\n let targetIssue = null;\n try {\n targetIssue = await readIssue(targetDir, sourceIssue.id);\n } catch {\n // Issue doesn't exist in target - will be created\n }\n\n if (targetIssue) {\n // Issue exists in both - merge\n // Use null base since we don't track common ancestor\n // mergeIssues uses created_at as tiebreaker, so put newer version as \"local\" to win\n const sourceTime = new Date(sourceIssue.updated_at).getTime();\n const targetTime = new Date(targetIssue.updated_at).getTime();\n\n let result;\n let winnerSource: 'local' \| 'remote';\n if (sourceTime >= targetTime) {\n // Source (worktree) is newer - put as local so it wins\n result = mergeIssues(null, sourceIssue, targetIssue);\n winnerSource = 'local';\n } else {\n // Target (workspace) is newer - put as local so it wins\n result = mergeIssues(null, targetIssue, sourceIssue);\n winnerSource = 'remote';\n }\n\n // Save merged issue\n await writeIssue(targetDir, result.merged);\n saved++;\n\n // Save any conflicts to workspace attic\n for (const conflict of result.conflicts) {\n await saveConflictToAttic(atticDir, conflict, winnerSource);\n conflicts++;\n }\n } else {\n // New issue - just save\n await writeIssue(targetDir, sourceIssue);\n saved++;\n }\n }\n\n // Copy ID mappings from source to target (only for saved issues)\n // Build set of saved issue ULIDs (without prefix) to filter mappings\n const savedIssueUlids = new Set(sourceIssues.map((issue) => extractUlidFromInternalId(issue.id)));\n\n const sourceMapping = await loadIdMapping(dataSyncDir);\n const targetMapping = await loadIdMapping(targetDir);\n\n // Merge: add source mappings to target (only for saved issues, don't overwrite existing)\n for (const [shortId, ulid] of sourceMapping.shortToUlid) {\n // Only copy mapping if the ULID corresponds to a saved issue\n if (savedIssueUlids.has(ulid) && !targetMapping.shortToUlid.has(shortId)) {\n addIdMapping(targetMapping, ulid, shortId);\n }\n }\n await saveIdMapping(targetDir, targetMapping);\n\n return {\n saved,\n conflicts,\n targetDir,\n totalSource,\n filtered: isUpdatesOnly ?? false,\n };\n}\n\n/\n Import issues from a workspace or directory to the data-sync directory.\n \n Uses mergeIssues() for proper conflict detection when an issue exists\n * in both source (workspace) and target (worktree). Conflicts are saved\n * to the worktree's attic.\n \n @param tbdRoot - The root directory of the tbd project\n * @param dataSyncDir - The data-sync directory to import into\n * @param options - Import options (workspace name, directory, or outbox)\n * @returns Import result with counts\n /\nexport async function importFromWorkspace(\n tbdRoot: string,\n dataSyncDir: string,\n options: ImportOptions,\n): Promise<ImportResult> {\n const sourceDir = resolveWorkspaceDir(tbdRoot, options);\n\n // Determine if we should clear on success\n // --outbox implies --clear-on-success\n const shouldClear = options.clearOnSuccess ?? options.outbox ?? false;\n\n // Create attic directory in target (worktree)\n const atticDir = join(dataSyncDir, 'attic');\n await ensureDir(atticDir);\n\n // List all issues in source workspace\n const sourceIssues = await listIssues(sourceDir);\n\n let imported = 0;\n let conflicts = 0;\n\n // Import each issue to data-sync, merging if needed\n for (const sourceIssue of sourceIssues) {\n // Check if issue already exists in worktree\n let targetIssue = null;\n try {\n targetIssue = await readIssue(dataSyncDir, sourceIssue.id);\n } catch {\n // Issue doesn't exist in target - will be created\n }\n\n if (targetIssue) {\n // Issue exists in both - merge\n // Use null base since we don't track common ancestor\n // mergeIssues uses created_at as tiebreaker, so put newer version as \"local\" to win\n const sourceTime = new Date(sourceIssue.updated_at).getTime();\n const targetTime = new Date(targetIssue.updated_at).getTime();\n\n let result;\n let winnerSource: 'local' \| 'remote';\n if (sourceTime >= targetTime) {\n // Source (workspace) is newer - put as local so it wins\n result = mergeIssues(null, sourceIssue, targetIssue);\n winnerSource = 'local';\n } else {\n // Target (worktree) is newer - put as local so it wins\n result = mergeIssues(null, targetIssue, sourceIssue);\n winnerSource = 'remote';\n }\n\n // Save merged issue\n await writeIssue(dataSyncDir, result.merged);\n imported++;\n\n // Save any conflicts to worktree attic\n for (const conflict of result.conflicts) {\n await saveConflictToAttic(atticDir, conflict, winnerSource);\n conflicts++;\n }\n } else {\n // New issue - just save\n await writeIssue(dataSyncDir, sourceIssue);\n imported++;\n }\n }\n\n // Merge ID mappings from source (workspace) to target (worktree) - union operation\n const sourceMapping = await loadIdMapping(sourceDir);\n const targetMapping = await loadIdMapping(dataSyncDir);\n\n // Merge: add source mappings to target (don't overwrite existing)\n for (const [shortId, ulid] of sourceMapping.shortToUlid) {\n if (!targetMapping.shortToUlid.has(shortId)) {\n addIdMapping(targetMapping, ulid, shortId);\n }\n }\n await saveIdMapping(dataSyncDir, targetMapping);\n\n // Clear source workspace if requested\n let cleared = false;\n if (shouldClear && imported > 0) {\n const workspaceName = options.outbox ? 'outbox' : options.workspace;\n if (workspaceName) {\n await deleteWorkspace(tbdRoot, workspaceName);\n cleared = true;\n }\n }\n\n return {\n imported,\n conflicts,\n sourceDir,\n cleared,\n };\n}\n\n/\n Issue counts by status for a workspace.\n /\nexport interface WorkspaceIssueCounts {\n open: number;\n in_progress: number;\n closed: number;\n total: number;\n}\n\n/\n Information about a workspace including issue counts.\n /\nexport interface WorkspaceInfo {\n name: string;\n counts: WorkspaceIssueCounts;\n}\n\n/\n List all workspaces in .tbd/workspaces/.\n \n @param tbdRoot - The root directory of the tbd project\n * @returns Array of workspace names\n /\nexport async function listWorkspaces(tbdRoot: string): Promise<string[]> {\n const workspacesDir = join(tbdRoot, WORKSPACES_DIR);\n\n let entries: string[];\n try {\n entries = await readdir(workspacesDir);\n } catch {\n // Directory doesn't exist\n return [];\n }\n\n // Filter to directories only\n const workspaces: string[] = [];\n for (const entry of entries) {\n try {\n const entryPath = join(workspacesDir, entry);\n const entryStat = await stat(entryPath);\n if (entryStat.isDirectory()) {\n workspaces.push(entry);\n }\n } catch {\n // Skip entries we can't stat\n }\n }\n\n return workspaces;\n}\n\n/\n List all workspaces with issue counts by status.\n \n @param tbdRoot - The root directory of the tbd project\n * @returns Array of workspace info with names and counts\n /\nexport async function listWorkspacesWithCounts(tbdRoot: string): Promise<WorkspaceInfo[]> {\n const workspaceNames = await listWorkspaces(tbdRoot);\n const result: WorkspaceInfo[] = [];\n\n for (const name of workspaceNames) {\n const workspaceDir = join(tbdRoot, getWorkspaceDir(name));\n let issues: Issue[] = [];\n\n try {\n issues = await listIssues(workspaceDir);\n } catch {\n // No issues or can't read - counts will be 0\n }\n\n // Count by status\n const counts: WorkspaceIssueCounts = {\n open: 0,\n in_progress: 0,\n closed: 0,\n total: issues.length,\n };\n\n for (const issue of issues) {\n if (issue.status === 'open' \|\| issue.status === 'blocked' \|\| issue.status === 'deferred') {\n counts.open++;\n } else if (issue.status === 'in_progress') {\n counts.in_progress++;\n } else if (issue.status === 'closed') {\n counts.closed++;\n }\n }\n\n result.push({ name, counts });\n }\n\n return result;\n}\n\n/\n Delete a workspace.\n \n @param tbdRoot - The root directory of the tbd project\n * @param name - Workspace name\n /\nexport async function deleteWorkspace(tbdRoot: string, name: string): Promise<void> {\n const workspaceDir = join(tbdRoot, getWorkspaceDir(name));\n\n try {\n await rm(workspaceDir, { recursive: true, force: true });\n } catch {\n // Ignore errors if workspace doesn't exist\n }\n}\n\n/\n Check if a workspace exists.\n \n @param tbdRoot - The root directory of the tbd project\n * @param name - Workspace name\n * @returns true if the workspace directory exists\n /\nexport async function workspaceExists(tbdRoot: string, name: string): Promise<boolean> {\n const workspaceDir = join(tbdRoot, getWorkspaceDir(name));\n\n try {\n const s = await stat(workspaceDir);\n return s.isDirectory();\n } catch {\n return false;\n }\n}\n","/\n `tbd status` - Show repository status and orientation.\n \n This is the \"orientation\" command—like `git status`, it works regardless of\n * initialization state and helps users understand where they are.\n \n Unlike Beads where `bd status` is just an alias for `bd stats`, `tbd status`\n * is a distinct command that provides system orientation, not issue statistics.\n \n See: tbd-design.md §4.9 Status\n /\n\nimport { Command } from 'commander';\nimport { access, readFile } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nimport { VERSION } from '../lib/version.js';\nimport { BaseCommand } from '../lib/base-command.js';\nimport { ICONS } from '../lib/output.js';\nimport {\n renderRepositorySection,\n renderConfigSection,\n renderIntegrationsSection,\n renderBeadsWarning,\n renderWorktreeStatus,\n renderFooter,\n type IntegrationCheck,\n} from '../lib/sections.js';\nimport { readConfig, findTbdRoot } from '../../file/config.js';\nimport { WORKTREE_DIR } from '../../lib/paths.js';\nimport {\n getClaudePaths,\n getAgentsMdPath,\n CLAUDE_SETTINGS_DISPLAY,\n AGENTS_MD_DISPLAY,\n} from '../../lib/integration-paths.js';\nimport {\n git,\n getCurrentBranch,\n checkWorktreeHealth,\n checkGitVersion,\n findGitRoot,\n MIN_GIT_VERSION,\n} from '../../file/git.js';\nimport { listWorkspaces } from '../../file/workspace.js';\n\ninterface StatusData {\n initialized: boolean;\n tbd_version: string;\n working_directory: string;\n\n // Git info (always available)\n git_repository: boolean;\n git_branch: string \| null;\n git_version: string \| null;\n git_version_supported: boolean;\n\n // Beads detection (pre-init only)\n beads_detected: boolean;\n beads_issue_count: number \| null;\n\n // Post-init only\n sync_branch: string \| null;\n remote: string \| null;\n display_prefix: string \| null;\n worktree_path: string \| null;\n worktree_healthy: boolean \| null;\n workspaces: string[];\n\n // Integrations\n integrations: {\n claude_code: boolean;\n claude_code_path: string;\n codex: boolean;\n codex_path: string;\n };\n}\n\nclass StatusHandler extends BaseCommand {\n async run(): Promise<void> {\n const cwd = process.cwd();\n\n // Find tbd root (may be in parent directory)\n const tbdRoot = await findTbdRoot(cwd);\n\n // Find git root for checking integrations (.claude/, .beads/ are at git root)\n const gitRoot = await findGitRoot(cwd);\n\n // Use tbdRoot if available, otherwise gitRoot, otherwise cwd\n // .tbd/, .claude/, .beads/ are all at the project root (adjacent to .git/)\n const projectRoot = tbdRoot ?? gitRoot ?? cwd;\n\n const statusData: StatusData = {\n initialized: tbdRoot !== null,\n tbd_version: VERSION,\n working_directory: cwd,\n git_repository: false,\n git_branch: null,\n git_version: null,\n git_version_supported: false,\n beads_detected: false,\n beads_issue_count: null,\n sync_branch: null,\n remote: null,\n display_prefix: null,\n worktree_path: null,\n worktree_healthy: null,\n workspaces: [],\n integrations: {\n claude_code: false,\n claude_code_path: CLAUDE_SETTINGS_DISPLAY,\n codex: false,\n codex_path: AGENTS_MD_DISPLAY,\n },\n };\n\n // Check git repository\n const gitInfo = await this.checkGitRepo();\n statusData.git_repository = gitInfo.isRepo;\n statusData.git_branch = gitInfo.branch;\n\n // Check git version (only if git is available)\n if (gitInfo.isRepo) {\n try {\n const { version, supported } = await checkGitVersion();\n statusData.git_version = `${version.major}.${version.minor}.${version.patch}`;\n statusData.git_version_supported = supported;\n } catch {\n // Git version check failed - leave as null/false\n }\n }\n\n // Check for beads (at project root, not cwd)\n const beadsInfo = await this.checkBeads(projectRoot);\n statusData.beads_detected = beadsInfo.detected;\n statusData.beads_issue_count = beadsInfo.issueCount;\n\n // Check integrations at project root (not cwd)\n statusData.integrations = await this.checkIntegrations(projectRoot);\n\n if (statusData.initialized && tbdRoot) {\n // Load config and issue info\n await this.loadPostInitInfo(tbdRoot, statusData);\n }\n\n this.output.data(statusData, () => {\n this.renderText(statusData);\n });\n }\n\n private async checkGitRepo(): Promise<{ isRepo: boolean; branch: string \| null }> {\n try {\n const branch = await getCurrentBranch();\n return { isRepo: true, branch };\n } catch {\n // getCurrentBranch may fail in repos with no commits\n // Fall back to checking if we're in a git repo using git rev-parse --git-dir\n try {\n await git('rev-parse', '--git-dir');\n // We're in a git repo but can't get branch (maybe no commits)\n return { isRepo: true, branch: null };\n } catch {\n return { isRepo: false, branch: null };\n }\n }\n }\n\n private async checkBeads(\n projectRoot: string,\n ): Promise<{ detected: boolean; issueCount: number \| null }> {\n const beadsDir = join(projectRoot, '.beads');\n try {\n await access(beadsDir);\n // Count issues in beads\n const issuesFile = join(beadsDir, 'issues.jsonl');\n try {\n const content = await readFile(issuesFile, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l.trim());\n return { detected: true, issueCount: lines.length };\n } catch {\n return { detected: true, issueCount: null };\n }\n } catch {\n return { detected: false, issueCount: null };\n }\n }\n\n private async checkIntegrations(projectRoot: string): Promise<StatusData['integrations']> {\n // All integrations use project-local paths (relative to git/project root)\n const claudePaths = getClaudePaths(projectRoot);\n const agentsPath = getAgentsMdPath(projectRoot);\n\n const result: StatusData['integrations'] = {\n claude_code: false,\n claude_code_path: CLAUDE_SETTINGS_DISPLAY,\n codex: false,\n codex_path: AGENTS_MD_DISPLAY,\n };\n\n // Check Claude Code hooks in project-local settings\n try {\n await access(claudePaths.settings);\n const content = await readFile(claudePaths.settings, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n const hooks = settings.hooks as Record<string, unknown> \| undefined;\n if (hooks) {\n const sessionStart = hooks.SessionStart as { hooks?: { command?: string }[] }[];\n result.claude_code =\n sessionStart?.some((h) => h.hooks?.some((hook) => hook.command?.includes('tbd'))) ??\n false;\n }\n } catch {\n // Not installed\n }\n\n // Check Codex AGENTS.md (also used by Cursor since v1.6)\n try {\n await access(agentsPath);\n const content = await readFile(agentsPath, 'utf-8');\n result.codex = content.includes('BEGIN TBD INTEGRATION');\n } catch {\n // Not installed\n }\n\n return result;\n }\n\n private async loadPostInitInfo(cwd: string, data: StatusData): Promise<void> {\n // Load config\n try {\n const config = await readConfig(cwd);\n data.sync_branch = config.sync.branch;\n data.remote = config.sync.remote;\n data.display_prefix = config.display.id_prefix;\n } catch {\n // Config read failed\n }\n\n // Check worktree health\n const worktreePath = join(cwd, WORKTREE_DIR);\n const worktreeHealth = await checkWorktreeHealth(cwd);\n data.worktree_path = worktreePath;\n data.worktree_healthy = worktreeHealth.valid;\n\n // Check workspaces\n try {\n data.workspaces = await listWorkspaces(cwd);\n } catch {\n // Workspace check failed - leave as empty\n }\n }\n\n private renderText(data: StatusData): void {\n const colors = this.output.getColors();\n\n if (!data.initialized) {\n // Pre-init output - unique to status, not shared with doctor\n this.renderPreInitText(data, colors);\n return;\n }\n\n // Post-init output - uses shared section renderers\n // REPOSITORY section (shared with doctor)\n renderRepositorySection(\n {\n version: data.tbd_version,\n workingDirectory: data.working_directory,\n initialized: data.initialized,\n gitRepository: data.git_repository,\n gitBranch: data.git_branch,\n gitVersion: data.git_version,\n gitVersionSupported: data.git_version_supported,\n },\n colors,\n );\n\n // Beads coexistence warning\n if (data.beads_detected) {\n renderBeadsWarning(colors);\n }\n\n // CONFIG section (shared with doctor)\n renderConfigSection(\n {\n syncBranch: data.sync_branch,\n remote: data.remote,\n displayPrefix: data.display_prefix,\n },\n colors,\n );\n\n // INTEGRATIONS section (shared with doctor)\n const integrationChecks: IntegrationCheck[] = [\n {\n name: 'Claude Code hooks',\n installed: data.integrations.claude_code,\n path: data.integrations.claude_code_path,\n },\n {\n name: 'Codex AGENTS.md',\n installed: data.integrations.codex,\n path: data.integrations.codex_path,\n },\n ];\n const hasMissingIntegrations = renderIntegrationsSection(integrationChecks, colors);\n\n if (hasMissingIntegrations) {\n console.log('');\n console.log(`Run ${colors.bold('tbd setup auto')} to configure detected agents`);\n }\n\n // Worktree health\n if (data.worktree_healthy !== null && data.worktree_path) {\n renderWorktreeStatus(data.worktree_path, data.worktree_healthy, colors);\n }\n\n // Workspaces (only show if there are any)\n if (data.workspaces.length > 0) {\n console.log('');\n console.log(colors.bold('WORKSPACES'));\n for (const ws of data.workspaces) {\n console.log(` ${ws}`);\n }\n }\n\n // Footer (shared format)\n renderFooter(\n [\n { command: 'tbd stats', description: 'issue statistics' },\n { command: 'tbd doctor', description: 'health checks' },\n ],\n colors,\n );\n }\n\n /\n Render pre-init text (unique to status command).\n * This is not shared with doctor since doctor requires initialization.\n /\n private renderPreInitText(\n data: StatusData,\n colors: ReturnType<typeof this.output.getColors>,\n ): void {\n console.log(`${colors.warn('Not a tbd repository.')}`);\n console.log('');\n console.log('Detected:');\n\n // Git status\n if (data.git_repository) {\n const branchInfo = data.git_branch ? ` (${data.git_branch} branch)` : '';\n console.log(` ${colors.success(ICONS.SUCCESS)} Git repository${branchInfo}`);\n // Show git version\n if (data.git_version) {\n const versionStatus = data.git_version_supported\n ? colors.success(ICONS.SUCCESS)\n : colors.warn(ICONS.WARN);\n const versionNote = data.git_version_supported\n ? ''\n : ` ${colors.dim(`(requires ${MIN_GIT_VERSION}+)`)}`;\n console.log(` ${versionStatus} Git ${data.git_version}${versionNote}`);\n }\n } else {\n console.log(` ${colors.error(ICONS.ERROR)} Git repository not found`);\n }\n\n // Beads status\n if (data.beads_detected) {\n const countInfo =\n data.beads_issue_count !== null ? ` (.beads/ with ${data.beads_issue_count} issues)` : '';\n console.log(` ${colors.success(ICONS.SUCCESS)} Beads repository${countInfo}`);\n } else {\n console.log(` ${colors.dim(ICONS.ERROR)} Beads not detected`);\n }\n\n // tbd status\n console.log(` ${colors.error(ICONS.ERROR)} tbd not initialized`);\n\n console.log('');\n console.log('To get started:');\n if (data.beads_detected) {\n console.log(\n ` ${colors.bold('tbd setup --auto')} # Migrate from Beads (recommended)`,\n );\n } else {\n console.log(\n ` ${colors.bold('tbd setup --auto --prefix=<name>')} # Full setup with prefix`,\n );\n }\n console.log(` ${colors.bold('tbd init --prefix=X')} # Surgical init only`);\n }\n}\n\nexport const statusCommand = new Command('status')\n .description('Show repository status and orientation')\n .action(async (_options, command) => {\n const handler = new StatusHandler(command);\n await handler.run();\n });\n","/\n `tbd stats` - Show repository statistics.\n \n See: tbd-design.md §4.9 Stats\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotInitializedError } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport type { Issue, IssueStatusType, IssueKindType } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { formatPriority } from '../../lib/priority.js';\nimport { renderFooter } from '../lib/sections.js';\nimport { getStatusIcon, getStatusColor } from '../../lib/status.js';\n\n/\n Active statuses (non-closed).\n /\nconst ACTIVE_STATUSES: IssueStatusType[] = ['open', 'in_progress', 'blocked', 'deferred'];\n\n/\n All statuses in display order.\n /\nconst STATUS_ORDER: IssueStatusType[] = ['open', 'in_progress', 'blocked', 'deferred', 'closed'];\n\n/\n All kinds in display order.\n /\nconst KIND_ORDER: IssueKindType[] = ['bug', 'feature', 'task', 'epic', 'chore'];\n\n/\n Priority labels for display.\n /\nconst PRIORITY_LABELS = ['Critical', 'High', 'Medium', 'Low', 'Lowest'];\n\nclass StatsHandler extends BaseCommand {\n async run(): Promise<void> {\n await requireInit();\n\n // Load all issues\n let issues: Issue[];\n try {\n const dataSyncDir = await resolveDataSyncDir();\n issues = await listIssues(dataSyncDir);\n } catch {\n throw new NotInitializedError('No issue store found. Run `tbd init` first.');\n }\n\n // Count by status\n const byStatus: Record<IssueStatusType, number> = {\n open: 0,\n in_progress: 0,\n blocked: 0,\n deferred: 0,\n closed: 0,\n };\n\n // Count by kind (active vs closed)\n const byKindActive: Record<IssueKindType, number> = {\n bug: 0,\n feature: 0,\n task: 0,\n epic: 0,\n chore: 0,\n };\n const byKindClosed: Record<IssueKindType, number> = {\n bug: 0,\n feature: 0,\n task: 0,\n epic: 0,\n chore: 0,\n };\n\n // Count by priority (active vs closed)\n const byPriorityActive: Record<number, number> = { 0: 0, 1: 0, 2: 0, 3: 0, 4: 0 };\n const byPriorityClosed: Record<number, number> = { 0: 0, 1: 0, 2: 0, 3: 0, 4: 0 };\n\n // Accumulate counts\n for (const issue of issues) {\n byStatus[issue.status]++;\n\n const isActive = issue.status !== 'closed';\n if (isActive) {\n byKindActive[issue.kind]++;\n if (issue.priority >= 0 && issue.priority <= 4) {\n byPriorityActive[issue.priority]!++;\n }\n } else {\n byKindClosed[issue.kind]++;\n if (issue.priority >= 0 && issue.priority <= 4) {\n byPriorityClosed[issue.priority]!++;\n }\n }\n }\n\n // Calculate totals\n const activeTotal = ACTIVE_STATUSES.reduce((sum, s) => sum + byStatus[s], 0);\n const closedTotal = byStatus.closed;\n const total = issues.length;\n\n const stats = {\n total,\n active: activeTotal,\n closed: closedTotal,\n byStatus,\n byKindActive,\n byKindClosed,\n byPriorityActive,\n byPriorityClosed,\n };\n\n this.output.data(stats, () => {\n const colors = this.output.getColors();\n\n if (stats.total === 0) {\n console.log(colors.dim('No issues found.'));\n renderFooter(\n [\n { command: 'tbd status', description: 'setup info' },\n { command: 'tbd doctor', description: 'health checks' },\n ],\n colors,\n );\n return;\n }\n\n // Column width for counts (right-aligned)\n const countWidth = 6;\n\n // === BY STATUS SECTION ===\n console.log(colors.bold('By status:'));\n\n // Find max count for determining column alignment\n const maxStatusCount = Math.max(...Object.values(stats.byStatus), activeTotal, total);\n const statusCountWidth = Math.max(countWidth, String(maxStatusCount).length + 2);\n\n // Show each status with icon and color\n for (const status of STATUS_ORDER) {\n const count = stats.byStatus[status];\n if (status === 'closed') continue; // Show closed after subtotal\n const icon = getStatusIcon(status);\n const colorFn = getStatusColor(status, colors);\n const countStr = String(count).padStart(statusCountWidth);\n console.log(` ${colorFn(icon)} ${status.padEnd(14)}${countStr}`);\n }\n\n // Subtotal separator and active total\n console.log(` ${'─'.repeat(16 + statusCountWidth)}`);\n console.log(` ${'active'.padEnd(14)}${String(activeTotal).padStart(statusCountWidth)}`);\n\n // Closed with icon\n const closedIcon = getStatusIcon('closed');\n const closedColorFn = getStatusColor('closed', colors);\n console.log(\n ` ${closedColorFn(closedIcon)} ${'closed'.padEnd(14)}${String(closedTotal).padStart(statusCountWidth)}`,\n );\n\n // Total separator and total\n console.log(` ${'═'.repeat(16 + statusCountWidth)}`);\n console.log(` ${'total'.padEnd(14)}${String(total).padStart(statusCountWidth)}`);\n\n // === BY KIND SECTION ===\n console.log('');\n const kindHeader = `${'By kind:'.padEnd(18)}${'active'.padStart(countWidth + 2)}${'closed'.padStart(countWidth + 2)}${'total'.padStart(countWidth + 2)}`;\n console.log(colors.bold(kindHeader));\n\n for (const kind of KIND_ORDER) {\n const active = stats.byKindActive[kind];\n const closed = stats.byKindClosed[kind];\n const kindTotal = active + closed;\n if (kindTotal === 0) continue;\n\n const line = ` ${kind.padEnd(16)}${String(active).padStart(countWidth + 2)}${String(closed).padStart(countWidth + 2)}${String(kindTotal).padStart(countWidth + 2)}`;\n console.log(line);\n }\n\n // === BY PRIORITY SECTION ===\n console.log('');\n const priorityHeader = `${'By priority:'.padEnd(18)}${'active'.padStart(countWidth + 2)}${'closed'.padStart(countWidth + 2)}${'total'.padStart(countWidth + 2)}`;\n console.log(colors.bold(priorityHeader));\n\n for (let i = 0; i <= 4; i++) {\n const active = stats.byPriorityActive[i] ?? 0;\n const closed = stats.byPriorityClosed[i] ?? 0;\n const priorityTotal = active + closed;\n if (priorityTotal === 0) continue;\n\n const label = `${formatPriority(i)} (${PRIORITY_LABELS[i]})`;\n const line = ` ${label.padEnd(16)}${String(active).padStart(countWidth + 2)}${String(closed).padStart(countWidth + 2)}${String(priorityTotal).padStart(countWidth + 2)}`;\n console.log(line);\n }\n\n // Footer (shared format)\n renderFooter(\n [\n { command: 'tbd status', description: 'setup info' },\n { command: 'tbd doctor', description: 'health checks' },\n ],\n colors,\n );\n });\n }\n}\n\nexport const statsCommand = new Command('stats')\n .description('Show repository statistics')\n .action(async (_options, command) => {\n const handler = new StatsHandler(command);\n await handler.run();\n });\n","/\n Shared diagnostic output utilities for consistent diagnostic messages\n * across doctor, setup --check, and status commands.\n \n See: plan-2026-01-17-cli-output-design-system.md\n /\n\nimport { ICONS } from './output.js';\n\n/\n Result of a diagnostic check. Used by doctor, setup --check, and status commands\n * to report configuration and health status.\n \n @property name - Display name of the check (e.g., \"Config file\", \"Git version\")\n * @property status - Check result: ok (pass), warn (non-blocking issue), error (failure)\n * @property message - Optional message with additional context (e.g., version number, count)\n * @property path - Optional file/directory path being checked\n * @property details - Optional list of specific items when issues found (e.g., orphaned deps)\n * @property fixable - Whether the issue can be auto-fixed (shown as [fixable] suffix)\n * @property suggestion - Optional actionable fix suggestion (e.g., \"Run: tbd setup claude\")\n /\nexport interface DiagnosticResult {\n name: string;\n status: 'ok' \| 'warn' \| 'error';\n message?: string;\n path?: string;\n details?: string[];\n fixable?: boolean;\n suggestion?: string;\n}\n\n/\n Color function type for consistent coloring across the module.\n /\ntype ColorFn = (text: string) => string;\n\n/\n Colors interface matching createColors() return type.\n /\ninterface Colors {\n success: ColorFn;\n error: ColorFn;\n warn: ColorFn;\n dim: ColorFn;\n}\n\n/\n Render a single diagnostic result to console.\n \n Format examples:\n * - ✓ Config file (.tbd/config.yml)\n * - ⚠ Dependencies - 2 orphaned reference(s) [fixable]\n * tbd-abc1 -> tbd-xyz9 (missing)\n * tbd-def2 -> tbd-uvw8 (missing)\n * - ✗ Issue validity - 2 invalid issue(s) (.tbd/issues)\n * tbd-aaa1: missing required field 'title'\n * Run: tbd doctor --fix\n \n @param result - The diagnostic result to render\n * @param colors - Color functions from createColors()\n /\nexport function renderDiagnostic(result: DiagnosticResult, colors: Colors): void {\n // Build the main line\n let line = '';\n\n // Icon based on status\n const icon =\n result.status === 'ok'\n ? colors.success(ICONS.SUCCESS)\n : result.status === 'warn'\n ? colors.warn(ICONS.WARN)\n : colors.error(ICONS.ERROR);\n\n line += `${icon} ${result.name}`;\n\n // Message after dash\n if (result.message) {\n line += ` - ${result.message}`;\n }\n\n // Path in parentheses\n if (result.path) {\n line += ` ${colors.dim(`(${result.path})`)}`;\n }\n\n // Fixable suffix (only for non-ok)\n if (result.fixable && result.status !== 'ok') {\n line += ` ${colors.dim('[fixable]')}`;\n }\n\n console.log(line);\n\n // Details (only for non-ok status)\n if (result.details && result.details.length > 0 && result.status !== 'ok') {\n for (const detail of result.details) {\n console.log(` ${colors.dim(detail)}`);\n }\n }\n\n // Suggestion (only for non-ok status)\n if (result.suggestion && result.status !== 'ok') {\n console.log(` ${colors.dim(result.suggestion)}`);\n }\n}\n\n/\n Render multiple diagnostic results.\n \n @param results - Array of diagnostic results to render\n * @param colors - Color functions from createColors()\n /\nexport function renderDiagnostics(results: DiagnosticResult[], colors: Colors): void {\n for (const result of results) {\n renderDiagnostic(result, colors);\n }\n}\n","/\n `tbd doctor` - Diagnose and repair repository.\n \n A comprehensive health check that includes status, stats, and health checks.\n \n See: tbd-design.md §4.9 Doctor\n /\n\nimport { Command } from 'commander';\nimport { access, readdir, readFile, unlink } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit } from '../lib/errors.js';\nimport { listIssues } from '../../file/storage.js';\nimport { readConfig } from '../../file/config.js';\nimport type { Config, Issue, IssueStatusType } from '../../lib/types.js';\nimport { resolveDataSyncDir, TBD_DIR, WORKTREE_DIR, DATA_SYNC_DIR } from '../../lib/paths.js';\nimport {\n getClaudePaths,\n getAgentsMdPath,\n CLAUDE_SKILL_REL,\n AGENTS_MD_REL,\n} from '../../lib/integration-paths.js';\nimport { validateIssueId } from '../../lib/ids.js';\nimport {\n checkGitVersion,\n MIN_GIT_VERSION,\n getCurrentBranch,\n checkWorktreeHealth,\n checkLocalBranchHealth,\n checkRemoteBranchHealth,\n checkSyncConsistency,\n repairWorktree,\n migrateDataToWorktree,\n initWorktree,\n} from '../../file/git.js';\nimport { type DiagnosticResult, renderDiagnostics } from '../lib/diagnostics.js';\nimport { VERSION } from '../lib/version.js';\nimport { formatHeading } from '../lib/output.js';\nimport {\n renderRepositorySection,\n renderConfigSection,\n renderStatisticsSection,\n} from '../lib/sections.js';\n\nconst CONFIG_DIR = TBD_DIR;\n\ninterface DoctorOptions {\n fix?: boolean;\n}\n\nclass DoctorHandler extends BaseCommand {\n private dataSyncDir = '';\n private cwd = '';\n private config: Config \| null = null;\n private issues: Issue[] = [];\n\n async run(options: DoctorOptions): Promise<void> {\n const tbdRoot = await requireInit();\n\n this.cwd = tbdRoot;\n this.dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Load config\n try {\n this.config = await readConfig(this.cwd);\n } catch {\n // Config may be invalid - will be caught by health checks\n }\n\n // Load issues\n try {\n this.issues = await listIssues(this.dataSyncDir);\n } catch {\n // May fail if no issues yet\n }\n\n // Gather status info\n const statusInfo = await this.gatherStatusInfo();\n\n // Gather stats info\n const statsInfo = this.gatherStatsInfo();\n\n // Run health checks (core system checks)\n const healthChecks: DiagnosticResult[] = [];\n\n // Check 1: Git version\n healthChecks.push(await this.checkGitVersion());\n\n // Check 2: Config directory and file\n healthChecks.push(await this.checkConfig());\n\n // Check 3: Issues directory\n healthChecks.push(await this.checkIssuesDirectory());\n\n // Check 4: Orphaned dependencies\n healthChecks.push(this.checkOrphanedDependencies(this.issues));\n\n // Check 5: Duplicate IDs\n healthChecks.push(this.checkDuplicateIds(this.issues));\n\n // Check 6: Orphaned temp files\n healthChecks.push(await this.checkTempFiles(options.fix));\n\n // Check 7: Issue validity\n healthChecks.push(this.checkIssueValidity(this.issues));\n\n // Check 8: Worktree health (with fix support)\n healthChecks.push(await this.checkWorktree(options.fix));\n\n // Check 9: Data location (issues in wrong path, with fix support)\n healthChecks.push(await this.checkDataLocation(options.fix));\n\n // Check 10: Local sync branch health\n healthChecks.push(await this.checkLocalSyncBranch());\n\n // Check 11: Remote sync branch health\n healthChecks.push(await this.checkRemoteSyncBranch());\n\n // Check 12: Local has data but remote empty (ai-trade-arena bug detection)\n healthChecks.push(await this.checkLocalVsRemoteData());\n\n // Check 13: Multi-user/clone scenario detection\n healthChecks.push(await this.checkCloneScenarios());\n\n // Check 14: Sync consistency (worktree matches local, ahead/behind counts)\n healthChecks.push(await this.checkSyncConsistency());\n\n // Run integration checks (optional IDE/agent integrations)\n const integrationChecks: DiagnosticResult[] = [];\n\n // Integration 1: Claude Code skill file\n integrationChecks.push(await this.checkClaudeSkill());\n\n // Integration 2: Codex AGENTS.md (also used by Cursor since v1.6)\n integrationChecks.push(await this.checkCodexAgents());\n\n // Combine for overall status\n const allChecks = [...healthChecks, ...integrationChecks];\n const allOk = allChecks.every((c) => c.status === 'ok');\n const hasFixable = allChecks.some((c) => c.fixable && c.status !== 'ok');\n\n this.output.data(\n { statusInfo, statsInfo, healthChecks, integrationChecks, healthy: allOk },\n () => {\n const colors = this.output.getColors();\n\n // REPOSITORY section (shared with status command)\n renderRepositorySection(\n {\n version: VERSION,\n workingDirectory: this.cwd,\n initialized: true, // doctor requires init\n gitRepository: !!statusInfo.gitBranch,\n gitBranch: statusInfo.gitBranch,\n gitVersion: null, // Git version is shown in health checks\n gitVersionSupported: true,\n },\n colors,\n { showHeading: true },\n );\n\n // CONFIG section (shared with status command)\n if (this.config) {\n renderConfigSection(\n {\n syncBranch: this.config.sync.branch,\n remote: this.config.sync.remote,\n displayPrefix: this.config.display.id_prefix,\n },\n colors,\n );\n }\n\n // STATISTICS section (shared with stats command)\n renderStatisticsSection(statsInfo, colors);\n\n // INTEGRATIONS section\n console.log('');\n console.log(colors.bold(formatHeading('Integrations')));\n renderDiagnostics(integrationChecks, colors);\n\n // HEALTH CHECKS section (doctor-only)\n console.log('');\n console.log(colors.bold(formatHeading('Health Checks')));\n renderDiagnostics(healthChecks, colors);\n\n // Final summary\n console.log('');\n if (allOk) {\n this.output.success('Repository is healthy');\n } else if (hasFixable && !options.fix) {\n this.output.warn('Issues found. Run with --fix to repair.');\n } else {\n this.output.warn('Issues found that may require manual intervention.');\n }\n },\n );\n }\n\n private async gatherStatusInfo(): Promise<{\n gitBranch: string \| null;\n worktreeHealthy: boolean;\n }> {\n let gitBranch: string \| null = null;\n try {\n gitBranch = await getCurrentBranch();\n } catch {\n // Not in a git repo or no commits\n }\n\n const worktreeHealth = await checkWorktreeHealth(this.cwd);\n\n return {\n gitBranch,\n worktreeHealthy: worktreeHealth.valid,\n };\n }\n\n private gatherStatsInfo(): {\n total: number;\n ready: number;\n inProgress: number;\n blocked: number;\n open: number;\n } {\n // Count by status\n const byStatus: Record<IssueStatusType, number> = {\n open: 0,\n in_progress: 0,\n blocked: 0,\n deferred: 0,\n closed: 0,\n };\n\n // Build set of blocked issue IDs\n const blockedIds = new Set<string>();\n for (const issue of this.issues) {\n for (const dep of issue.dependencies) {\n if (dep.type === 'blocks') {\n const blockedIssue = this.issues.find((i) => i.id === dep.target);\n if (blockedIssue && blockedIssue.status !== 'closed') {\n blockedIds.add(dep.target);\n }\n }\n }\n }\n\n // Count ready issues (open and not blocked)\n let readyCount = 0;\n\n for (const issue of this.issues) {\n byStatus[issue.status]++;\n if (issue.status === 'open' && !blockedIds.has(issue.id)) {\n readyCount++;\n }\n }\n\n return {\n total: this.issues.length,\n ready: readyCount,\n inProgress: byStatus.in_progress,\n blocked: blockedIds.size,\n open: byStatus.open,\n };\n }\n\n private async checkGitVersion(): Promise<DiagnosticResult> {\n try {\n const { version, supported } = await checkGitVersion();\n const versionStr = `${version.major}.${version.minor}.${version.patch}`;\n\n if (supported) {\n return {\n name: 'Git version',\n status: 'ok',\n message: versionStr,\n };\n }\n\n return {\n name: 'Git version',\n status: 'error',\n message: `${versionStr} (requires ${MIN_GIT_VERSION}+)`,\n suggestion: 'Upgrade Git: https://git-scm.com/downloads',\n };\n } catch (error) {\n const msg = error instanceof Error ? error.message : String(error);\n if (msg.includes('git') \|\| msg.includes('not found') \|\| msg.includes('ENOENT')) {\n return {\n name: 'Git version',\n status: 'error',\n message: 'Git not found',\n suggestion: 'Install Git: https://git-scm.com/downloads',\n };\n }\n return {\n name: 'Git version',\n status: 'warn',\n message: `Unable to check: ${msg}`,\n };\n }\n }\n\n private async checkConfig(): Promise<DiagnosticResult> {\n const configPath = join(CONFIG_DIR, 'config.yml');\n try {\n await access(join(this.cwd, configPath));\n await readConfig(this.cwd);\n return { name: 'Config file', status: 'ok', path: configPath };\n } catch (error) {\n const msg = (error as Error).message;\n if (msg.includes('ENOENT')) {\n return {\n name: 'Config file',\n status: 'error',\n message: 'not found',\n path: configPath,\n suggestion: 'Run: tbd init',\n };\n }\n return {\n name: 'Config file',\n status: 'error',\n message: 'Invalid config file',\n path: configPath,\n };\n }\n }\n\n private async checkIssuesDirectory(): Promise<DiagnosticResult> {\n const issuesPath = join(CONFIG_DIR, 'issues');\n try {\n await access(join(this.dataSyncDir, 'issues'));\n return { name: 'Issues directory', status: 'ok', path: issuesPath };\n } catch {\n // No issues directory is normal for a fresh/empty repo\n return {\n name: 'Issues directory',\n status: 'ok',\n message: 'empty (no issues yet)',\n path: issuesPath,\n };\n }\n }\n\n private checkOrphanedDependencies(issues: Issue[]): DiagnosticResult {\n const issueIds = new Set(issues.map((i) => i.id));\n const orphans: string[] = [];\n\n for (const issue of issues) {\n for (const dep of issue.dependencies) {\n if (!issueIds.has(dep.target)) {\n orphans.push(`${issue.id} -> ${dep.target} (missing)`);\n }\n }\n }\n\n if (orphans.length === 0) {\n return { name: 'Dependencies', status: 'ok' };\n }\n\n return {\n name: 'Dependencies',\n status: 'warn',\n message: `${orphans.length} orphaned reference(s)`,\n details: orphans,\n fixable: true,\n suggestion: 'Run: tbd doctor --fix',\n };\n }\n\n private checkDuplicateIds(issues: Issue[]): DiagnosticResult {\n const seen = new Set<string>();\n const duplicates: string[] = [];\n\n for (const issue of issues) {\n if (seen.has(issue.id)) {\n duplicates.push(issue.id);\n }\n seen.add(issue.id);\n }\n\n if (duplicates.length === 0) {\n return { name: 'Unique IDs', status: 'ok' };\n }\n\n return {\n name: 'Unique IDs',\n status: 'error',\n message: `${duplicates.length} duplicate ID(s)`,\n details: duplicates.map((id) => `${id} (duplicate)`),\n suggestion: 'Manually remove duplicate issue files',\n };\n }\n\n private async checkTempFiles(fix?: boolean): Promise<DiagnosticResult> {\n const issuesPath = join(CONFIG_DIR, 'issues');\n const issuesDir = join(this.dataSyncDir, 'issues');\n let tempFiles: string[] = [];\n\n try {\n const files = await readdir(issuesDir);\n tempFiles = files.filter((f) => f.endsWith('.tmp'));\n } catch {\n // Directory doesn't exist - no temp files\n return { name: 'Temp files', status: 'ok', path: issuesPath };\n }\n\n if (tempFiles.length === 0) {\n return { name: 'Temp files', status: 'ok', path: issuesPath };\n }\n\n if (fix && !this.checkDryRun('Clean temp files')) {\n // Clean up temp files\n for (const file of tempFiles) {\n try {\n await unlink(join(issuesDir, file));\n } catch {\n // Ignore errors\n }\n }\n return {\n name: 'Temp files',\n status: 'ok',\n message: `Cleaned ${tempFiles.length} temp file(s)`,\n path: issuesPath,\n };\n }\n\n return {\n name: 'Temp files',\n status: 'warn',\n message: `${tempFiles.length} orphaned temp file(s)`,\n path: issuesPath,\n details: tempFiles,\n fixable: true,\n suggestion: 'Run: tbd doctor --fix',\n };\n }\n\n private checkIssueValidity(issues: Issue[]): DiagnosticResult {\n const invalid: { id: string; reason: string }[] = [];\n\n for (const issue of issues) {\n const issueId = issue.id ?? 'unknown';\n // Check required fields\n if (!issue.id) {\n invalid.push({ id: issueId, reason: 'missing required field: id' });\n continue;\n }\n if (!issue.title) {\n invalid.push({ id: issueId, reason: 'missing required field: title' });\n continue;\n }\n if (!issue.status) {\n invalid.push({ id: issueId, reason: 'missing required field: status' });\n continue;\n }\n if (!issue.kind) {\n invalid.push({ id: issueId, reason: 'missing required field: kind' });\n continue;\n }\n // Check ID format\n if (!validateIssueId(issue.id)) {\n invalid.push({ id: issueId, reason: 'invalid ID format' });\n continue;\n }\n // Check priority range\n if (issue.priority < 0 \|\| issue.priority > 4) {\n invalid.push({ id: issueId, reason: `invalid priority ${issue.priority} (must be 0-4)` });\n }\n }\n\n if (invalid.length === 0) {\n return { name: 'Issue validity', status: 'ok' };\n }\n\n return {\n name: 'Issue validity',\n status: 'error',\n message: `${invalid.length} invalid issue(s)`,\n details: invalid.map((i) => `${i.id}: ${i.reason}`),\n suggestion: 'Manually fix or delete invalid issue files',\n };\n }\n\n private async checkClaudeSkill(): Promise<DiagnosticResult> {\n const claudePaths = getClaudePaths(this.cwd);\n try {\n await access(claudePaths.skill);\n return { name: 'Claude Code skill', status: 'ok', path: CLAUDE_SKILL_REL };\n } catch {\n return {\n name: 'Claude Code skill',\n status: 'warn',\n message: 'not installed',\n path: CLAUDE_SKILL_REL,\n suggestion: 'Run: tbd setup --auto',\n };\n }\n }\n\n private async checkCodexAgents(): Promise<DiagnosticResult> {\n const agentsPath = getAgentsMdPath(this.cwd);\n try {\n await access(agentsPath);\n const content = await readFile(agentsPath, 'utf-8');\n if (content.includes('BEGIN TBD INTEGRATION')) {\n return { name: 'Codex AGENTS.md', status: 'ok', path: AGENTS_MD_REL };\n }\n return {\n name: 'Codex AGENTS.md',\n status: 'warn',\n message: 'exists but missing tbd integration',\n path: AGENTS_MD_REL,\n suggestion: 'Run: tbd setup --auto',\n };\n } catch {\n return {\n name: 'Codex AGENTS.md',\n status: 'warn',\n message: 'not installed',\n path: AGENTS_MD_REL,\n suggestion: 'Run: tbd setup --auto',\n };\n }\n }\n\n /\n Check worktree health with enhanced status detection.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4\n /\n private async checkWorktree(fix?: boolean): Promise<DiagnosticResult> {\n const worktreePath = WORKTREE_DIR;\n const worktreeHealth = await checkWorktreeHealth(this.cwd);\n\n switch (worktreeHealth.status) {\n case 'valid':\n return { name: 'Worktree', status: 'ok', path: worktreePath };\n\n case 'missing':\n // Worktree not existing is OK - it's created on demand\n return { name: 'Worktree', status: 'ok', message: 'not created yet', path: worktreePath };\n\n case 'prunable':\n case 'corrupted': {\n // Attempt repair if --fix is provided and not in dry-run mode\n if (fix && !this.checkDryRun('Repair worktree')) {\n const result = await repairWorktree(this.cwd, worktreeHealth.status);\n\n if (result.success) {\n const message = result.backedUp\n ? `repaired (backed up to ${result.backedUp})`\n : 'repaired successfully';\n return { name: 'Worktree', status: 'ok', message, path: worktreePath };\n }\n\n return {\n name: 'Worktree',\n status: 'error',\n message: `repair failed: ${result.error}`,\n path: worktreePath,\n };\n }\n\n // No --fix flag, report the issue\n if (worktreeHealth.status === 'prunable') {\n return {\n name: 'Worktree',\n status: 'error',\n message: 'prunable (directory deleted)',\n path: worktreePath,\n details: [\n 'The worktree directory was deleted but git still tracks it.',\n 'This can cause data to be written to the wrong location.',\n ],\n fixable: true,\n suggestion: 'Run: tbd doctor --fix to recreate worktree',\n };\n }\n\n return {\n name: 'Worktree',\n status: 'error',\n message: worktreeHealth.error ?? 'corrupted',\n path: worktreePath,\n details: ['The worktree exists but is not a valid git worktree.'],\n fixable: true,\n suggestion: 'Run: tbd doctor --fix to repair',\n };\n }\n\n default:\n return {\n name: 'Worktree',\n status: 'warn',\n message: worktreeHealth.error ?? 'unknown status',\n path: worktreePath,\n fixable: true,\n suggestion: 'Run: tbd doctor --fix',\n };\n }\n }\n\n /\n Check for issues in wrong location.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §5\n \n Issues should be in .tbd/data-sync-worktree/.tbd/data-sync/issues/\n * If they're in .tbd/data-sync/issues/ on main branch, the worktree was missing\n * and data was written to the fallback path - this is a bug requiring migration.\n /\n private async checkDataLocation(fix?: boolean): Promise<DiagnosticResult> {\n const wrongPath = join(this.cwd, DATA_SYNC_DIR);\n const wrongIssuesPath = join(wrongPath, 'issues');\n\n // Try to list issues in the wrong location\n let wrongPathIssues: Issue[] = [];\n try {\n wrongPathIssues = await listIssues(wrongPath);\n } catch {\n // No issues in wrong path - this is expected\n }\n\n if (wrongPathIssues.length === 0) {\n return { name: 'Data location', status: 'ok' };\n }\n\n // Issues found in wrong location - attempt migration if --fix and not dry-run\n if (fix && !this.checkDryRun('Migrate data to worktree')) {\n // First ensure worktree exists - create it if missing\n let worktreeHealth = await checkWorktreeHealth(this.cwd);\n if (worktreeHealth.status === 'missing') {\n // Worktree doesn't exist yet - create it for migration\n const initResult = await initWorktree(this.cwd);\n if (!initResult.success) {\n return {\n name: 'Data location',\n status: 'error',\n message: `${wrongPathIssues.length} issue(s) in wrong location, failed to create worktree: ${initResult.error}`,\n path: wrongIssuesPath,\n };\n }\n worktreeHealth = await checkWorktreeHealth(this.cwd);\n }\n\n if (worktreeHealth.status !== 'valid') {\n return {\n name: 'Data location',\n status: 'error',\n message: `${wrongPathIssues.length} issue(s) in wrong location, worktree not ready`,\n path: wrongIssuesPath,\n details: [\n 'Cannot migrate: worktree must be repaired first.',\n 'The worktree repair should have run before this check.',\n ],\n };\n }\n\n // Migrate data to worktree\n const result = await migrateDataToWorktree(this.cwd);\n\n if (result.success) {\n const message = result.backupPath\n ? `migrated ${result.migratedCount} file(s), backed up to ${result.backupPath}`\n : `migrated ${result.migratedCount} file(s)`;\n return { name: 'Data location', status: 'ok', message, path: wrongIssuesPath };\n }\n\n return {\n name: 'Data location',\n status: 'error',\n message: `migration failed: ${result.error}`,\n path: wrongIssuesPath,\n };\n }\n\n // No --fix flag, report the issue\n return {\n name: 'Data location',\n status: 'error',\n message: `${wrongPathIssues.length} issue(s) in wrong location`,\n path: wrongIssuesPath,\n details: [\n `Found ${wrongPathIssues.length} issues in .tbd/data-sync/ (wrong)`,\n 'Issues should be in .tbd/data-sync-worktree/.tbd/data-sync/',\n 'This indicates the worktree was missing when issues were created',\n ],\n fixable: true,\n suggestion: 'Run: tbd doctor --fix to migrate issues to worktree',\n };\n }\n\n /\n Check local sync branch health.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n /\n private async checkLocalSyncBranch(): Promise<DiagnosticResult> {\n const syncBranch = this.config?.sync.branch ?? 'tbd-sync';\n const localHealth = await checkLocalBranchHealth(syncBranch);\n\n if (localHealth.exists && !localHealth.orphaned) {\n return { name: 'Local sync branch', status: 'ok', message: syncBranch };\n }\n\n if (!localHealth.exists) {\n // Local branch doesn't exist - check if remote exists\n const remote = this.config?.sync.remote ?? 'origin';\n const remoteHealth = await checkRemoteBranchHealth(remote, syncBranch);\n\n if (remoteHealth.exists) {\n // Remote exists but local doesn't - can be created from remote\n return {\n name: 'Local sync branch',\n status: 'warn',\n message: `${syncBranch} not found (remote exists)`,\n suggestion: 'Run: tbd sync to create from remote',\n };\n }\n\n // Neither local nor remote - new repo, this is OK\n return {\n name: 'Local sync branch',\n status: 'ok',\n message: 'not created yet',\n };\n }\n\n // Branch exists but is orphaned (no commits)\n return {\n name: 'Local sync branch',\n status: 'warn',\n message: `${syncBranch} exists but has no commits`,\n suggestion: 'Run: tbd sync to push data',\n };\n }\n\n /\n Check remote sync branch health.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4b\n /\n private async checkRemoteSyncBranch(): Promise<DiagnosticResult> {\n const syncBranch = this.config?.sync.branch ?? 'tbd-sync';\n const remote = this.config?.sync.remote ?? 'origin';\n const remoteHealth = await checkRemoteBranchHealth(remote, syncBranch);\n\n if (remoteHealth.exists) {\n if (remoteHealth.diverged) {\n return {\n name: 'Remote sync branch',\n status: 'warn',\n message: `${remote}/${syncBranch} has diverged`,\n suggestion: 'Run: tbd sync to reconcile changes',\n };\n }\n return { name: 'Remote sync branch', status: 'ok', message: `${remote}/${syncBranch}` };\n }\n\n // Remote branch doesn't exist\n const localHealth = await checkLocalBranchHealth(syncBranch);\n if (localHealth.exists) {\n // Local exists but remote doesn't - needs push\n return {\n name: 'Remote sync branch',\n status: 'warn',\n message: `${remote}/${syncBranch} not found`,\n suggestion: 'Run: tbd sync to push local branch',\n };\n }\n\n // Neither exists - new repo, this is OK\n return {\n name: 'Remote sync branch',\n status: 'ok',\n message: 'not created yet',\n };\n }\n\n /\n Check for local data that hasn't been synced to remote.\n * This detects the ai-trade-arena bug scenario.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4\n /\n private async checkLocalVsRemoteData(): Promise<DiagnosticResult> {\n // Only check if worktree exists and has issues\n const worktreeHealth = await checkWorktreeHealth(this.cwd);\n if (worktreeHealth.status !== 'valid') {\n // Worktree not valid - can't compare\n return { name: 'Sync status', status: 'ok', message: 'worktree not active' };\n }\n\n // Count local issues in worktree\n const localIssueCount = this.issues.length;\n if (localIssueCount === 0) {\n return { name: 'Sync status', status: 'ok' };\n }\n\n // Check if remote branch exists and has commits\n const syncBranch = this.config?.sync.branch ?? 'tbd-sync';\n const remote = this.config?.sync.remote ?? 'origin';\n const remoteHealth = await checkRemoteBranchHealth(remote, syncBranch);\n\n if (!remoteHealth.exists) {\n // Remote doesn't exist - issues haven't been pushed\n return {\n name: 'Sync status',\n status: 'warn',\n message: `${localIssueCount} local issues, remote branch not found`,\n suggestion: 'Run: tbd sync to push issues to remote',\n };\n }\n\n // Note: Full remote issue count comparison would require fetching the remote\n // For now, we flag if local has issues but remote branch exists but is empty\n // This is detected by comparing commit counts or checking issue files\n // A simpler check: if worktree has uncommitted changes, we know they aren't synced\n\n return { name: 'Sync status', status: 'ok' };\n }\n\n /\n Check for multi-user/clone scenarios that indicate lost data.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §6\n /\n private async checkCloneScenarios(): Promise<DiagnosticResult> {\n // Only relevant if we have no issues\n const localIssueCount = this.issues.length;\n if (localIssueCount > 0) {\n return { name: 'Clone status', status: 'ok' };\n }\n\n // Check 1: Beads migration evidence exists but tbd has no issues\n const beadsDisabledPath = join(this.cwd, '.beads-disabled');\n let beadsMigrationExists = false;\n try {\n await access(beadsDisabledPath);\n beadsMigrationExists = true;\n } catch {\n // No beads migration - that's fine\n }\n\n if (beadsMigrationExists) {\n // Check if beads had issues\n const beadsJsonl = join(beadsDisabledPath, '.beads', 'issues.jsonl');\n let beadsIssueCount = 0;\n try {\n const content = await readFile(beadsJsonl, 'utf-8');\n beadsIssueCount = content.trim().split('\\n').filter(Boolean).length;\n } catch {\n // Can't read beads file - ignore\n }\n\n if (beadsIssueCount > 0) {\n return {\n name: 'Clone status',\n status: 'error',\n message: `Beads migration has ${beadsIssueCount} issues, tbd has none`,\n details: [\n 'This repo was migrated from beads but issues were never synced.',\n 'Another user may have the issues locally but they were not pushed.',\n ],\n suggestion: 'Contact the repo owner to run: tbd sync',\n };\n }\n }\n\n // Check 2: Config has id_prefix but no issues (suggests prior usage)\n if (!beadsMigrationExists && this.config?.display?.id_prefix) {\n return {\n name: 'Clone status',\n status: 'warn',\n message: `Config has prefix '${this.config.display.id_prefix}' but no issues`,\n details: [\n 'This suggests issues may have been created but not synced,',\n 'or were lost due to sync issues on another machine.',\n ],\n suggestion: 'If you expect issues to exist, contact the repo owner',\n };\n }\n\n // Check 3: Active beads directory exists (not migrated yet)\n const beadsPath = join(this.cwd, '.beads');\n let beadsActiveExists = false;\n try {\n await access(beadsPath);\n beadsActiveExists = true;\n } catch {\n // No active beads - that's fine\n }\n\n if (beadsActiveExists) {\n return {\n name: 'Clone status',\n status: 'ok',\n message: 'beads directory exists (migration available)',\n };\n }\n\n return { name: 'Clone status', status: 'ok' };\n }\n\n /\n Check sync consistency - worktree matches local, ahead/behind counts.\n * See: plan-2026-01-28-sync-worktree-recovery-and-hardening.md §4\n /\n private async checkSyncConsistency(): Promise<DiagnosticResult> {\n const syncBranch = this.config?.sync.branch ?? 'tbd-sync';\n const remote = this.config?.sync.remote ?? 'origin';\n\n // Only check if worktree is valid\n const worktreeHealth = await checkWorktreeHealth(this.cwd);\n if (worktreeHealth.status !== 'valid') {\n return { name: 'Sync consistency', status: 'ok', message: 'worktree not active' };\n }\n\n try {\n const consistency = await checkSyncConsistency(this.cwd, syncBranch, remote);\n\n // Check if worktree matches local\n if (!consistency.worktreeMatchesLocal) {\n return {\n name: 'Sync consistency',\n status: 'error',\n message: 'worktree HEAD does not match local branch',\n details: [\n `Worktree HEAD: ${consistency.worktreeHead.slice(0, 7)}`,\n `Local ${syncBranch}: ${consistency.localHead.slice(0, 7)}`,\n ],\n fixable: true,\n suggestion: 'Run: tbd doctor --fix to synchronize',\n };\n }\n\n // Check ahead/behind status\n if (consistency.localAhead > 0 && consistency.localBehind > 0) {\n return {\n name: 'Sync consistency',\n status: 'warn',\n message: `diverged (${consistency.localAhead} ahead, ${consistency.localBehind} behind)`,\n suggestion: 'Run: tbd sync to reconcile',\n };\n }\n\n if (consistency.localAhead > 0) {\n return {\n name: 'Sync consistency',\n status: 'warn',\n message: `${consistency.localAhead} commit(s) ahead of remote`,\n suggestion: 'Run: tbd sync to push changes',\n };\n }\n\n if (consistency.localBehind > 0) {\n return {\n name: 'Sync consistency',\n status: 'warn',\n message: `${consistency.localBehind} commit(s) behind remote`,\n suggestion: 'Run: tbd sync to pull changes',\n };\n }\n\n return { name: 'Sync consistency', status: 'ok' };\n } catch (error) {\n // Sync consistency check failed - may be normal if branches don't exist yet\n const msg = error instanceof Error ? error.message : String(error);\n if (msg.includes('not found') \|\| msg.includes('no commits')) {\n return { name: 'Sync consistency', status: 'ok', message: 'branches not yet established' };\n }\n return {\n name: 'Sync consistency',\n status: 'warn',\n message: `Unable to check: ${msg}`,\n };\n }\n }\n}\n\nexport const doctorCommand = new Command('doctor')\n .description('Diagnose and repair repository')\n .option('--fix', 'Attempt to fix issues')\n .action(async (options, command) => {\n const handler = new DoctorHandler(command);\n await handler.run(options);\n });\n","/\n `tbd config` - Configuration management.\n \n See: tbd-design.md §4.9 Config\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotInitializedError, ValidationError } from '../lib/errors.js';\nimport { readConfig, writeConfig } from '../../file/config.js';\nimport type { Config } from '../../lib/types.js';\n\n// Show config\nclass ConfigShowHandler extends BaseCommand {\n async run(): Promise<void> {\n await requireInit();\n\n let config: Config;\n try {\n config = await readConfig('.');\n } catch {\n throw new NotInitializedError('No configuration found. Run `tbd init` first.');\n }\n\n this.output.data(config, () => {\n // Output as YAML format\n const colors = this.output.getColors();\n console.log(`${colors.dim('tbd_version:')} ${config.tbd_version}`);\n console.log(`${colors.dim('sync:')}`);\n console.log(` ${colors.dim('branch:')} ${config.sync.branch}`);\n console.log(` ${colors.dim('remote:')} ${config.sync.remote}`);\n console.log(`${colors.dim('display:')}`);\n console.log(` ${colors.dim('id_prefix:')} ${config.display.id_prefix}`);\n console.log(`${colors.dim('settings:')}`);\n console.log(` ${colors.dim('auto_sync:')} ${config.settings.auto_sync}`);\n });\n }\n}\n\n// Set config value\nclass ConfigSetHandler extends BaseCommand {\n async run(key: string, value: string): Promise<void> {\n await requireInit();\n\n let config: Config;\n try {\n config = await readConfig('.');\n } catch {\n throw new NotInitializedError('No configuration found. Run `tbd init` first.');\n }\n\n if (this.checkDryRun('Would set config', { key, value })) {\n return;\n }\n\n // Parse the key path and set value\n const keys = key.split('.');\n const parsedValue = this.parseValue(value);\n\n try {\n this.setNestedValue(config, keys, parsedValue);\n } catch {\n throw new ValidationError(`Invalid key: ${key}`);\n }\n\n await this.execute(async () => {\n await writeConfig('.', config);\n }, 'Failed to write config');\n\n this.output.success(`Set ${key} = ${value}`);\n }\n\n private parseValue(value: string): unknown {\n // Parse boolean\n if (value === 'true') return true;\n if (value === 'false') return false;\n // Parse number\n const num = Number(value);\n if (!isNaN(num)) return num;\n // Return as string\n return value;\n }\n\n private setNestedValue(obj: Record<string, unknown>, keys: string[], value: unknown): void {\n let current = obj;\n for (let i = 0; i < keys.length - 1; i++) {\n const key = keys[i]!;\n if (typeof current[key] !== 'object' \|\| current[key] === null) {\n throw new Error(`Invalid path: ${keys.slice(0, i + 1).join('.')}`);\n }\n current = current[key] as Record<string, unknown>;\n }\n const lastKey = keys[keys.length - 1]!;\n if (!(lastKey in current)) {\n throw new Error(`Unknown key: ${keys.join('.')}`);\n }\n current[lastKey] = value;\n }\n}\n\n// Get config value\nclass ConfigGetHandler extends BaseCommand {\n async run(key: string): Promise<void> {\n await requireInit();\n\n let config: Config;\n try {\n config = await readConfig('.');\n } catch {\n throw new NotInitializedError('No configuration found. Run `tbd init` first.');\n }\n\n const keys = key.split('.');\n let value: unknown = config;\n\n for (const k of keys) {\n if (typeof value !== 'object' \|\| value === null \|\| !(k in value)) {\n throw new ValidationError(`Unknown key: ${key}`);\n }\n value = (value as Record<string, unknown>)[k];\n }\n\n this.output.data({ key, value }, () => {\n console.log(String(value));\n });\n }\n}\n\nconst showConfigCommand = new Command('show')\n .description('Show all configuration')\n .action(async (_options, command) => {\n const handler = new ConfigShowHandler(command);\n await handler.run();\n });\n\nconst setConfigCommand = new Command('set')\n .description('Set a configuration value')\n .argument('<key>', 'Configuration key (e.g., sync.branch)')\n .argument('<value>', 'Value to set')\n .action(async (key, value, _options, command) => {\n const handler = new ConfigSetHandler(command);\n await handler.run(key, value);\n });\n\nconst getConfigCommand = new Command('get')\n .description('Get a configuration value')\n .argument('<key>', 'Configuration key')\n .action(async (key, _options, command) => {\n const handler = new ConfigGetHandler(command);\n await handler.run(key);\n });\n\nexport const configCommand = new Command('config')\n .description('Manage configuration')\n .addCommand(showConfigCommand)\n .addCommand(setConfigCommand)\n .addCommand(getConfigCommand);\n","/\n `tbd attic` - Attic (conflict archive) commands.\n \n See: tbd-design.md §4.11 Attic Commands\n /\n\nimport { Command } from 'commander';\nimport { readdir, readFile, mkdir } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nimport { parseYamlWithConflictDetection, stringifyYaml } from '../../utils/yaml-utils.js';\n\nimport { writeFile } from 'atomically';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, ValidationError } from '../lib/errors.js';\nimport { readIssue, writeIssue } from '../../file/storage.js';\nimport { normalizeIssueId, formatDisplayId, formatDebugId } from '../../lib/ids.js';\nimport { resolveDataSyncDir, resolveAtticDir } from '../../lib/paths.js';\nimport { formatTimestampAgo } from '../../lib/format-utils.js';\nimport { now } from '../../utils/time-utils.js';\nimport { loadIdMapping } from '../../file/id-mapping.js';\nimport { readConfig } from '../../file/config.js';\nimport type { AtticEntry } from '../../lib/types.js';\nimport { AtticEntrySchema } from '../../lib/schemas.js';\n\n/\n Get attic entry filename from components.\n /\nfunction getAtticFilename(entityId: string, timestamp: string, field: string): string {\n // Convert timestamp colons to hyphens for filesystem safety\n const safeTimestamp = timestamp.replace(/:/g, '-');\n return `${entityId}_${safeTimestamp}_${field}.yml`;\n}\n\n/\n Parse attic entry filename to components.\n /\nfunction parseAtticFilename(\n filename: string,\n): { entityId: string; timestamp: string; field: string } \| null {\n // Format: is-abc123_2025-01-07T10-30-00Z_description.yml\n const match = /^(is-[a-f0-9]+)_(.+)_([^_]+)\\.yml$/.exec(filename);\n if (!match) return null;\n const [, entityId, timestamp, field] = match;\n // Convert hyphens back to colons in timestamp\n const isoTimestamp = timestamp!.replace(/T(\\d{2})-(\\d{2})-(\\d{2})/, 'T$1:$2:$3');\n return { entityId: entityId!, timestamp: isoTimestamp, field: field! };\n}\n\n/\n List all attic entries.\n /\nasync function listAtticEntries(filterById?: string): Promise<AtticEntry[]> {\n const atticPath = await resolveAtticDir();\n let files: string[];\n\n try {\n files = await readdir(atticPath);\n } catch {\n // Attic directory doesn't exist - return empty\n return [];\n }\n\n const entries: AtticEntry[] = [];\n\n for (const file of files) {\n if (!file.endsWith('.yml')) continue;\n\n const parsed = parseAtticFilename(file);\n if (!parsed) continue;\n\n // Filter by ID if specified\n if (filterById && parsed.entityId !== filterById) continue;\n\n try {\n const filePath = join(atticPath, file);\n const content = await readFile(filePath, 'utf-8');\n const rawData = parseYamlWithConflictDetection<unknown>(content, filePath);\n const entry = AtticEntrySchema.parse(rawData);\n entries.push(entry);\n } catch {\n // Skip invalid files (including those with merge conflicts or schema errors)\n }\n }\n\n // Sort by timestamp descending (most recent first)\n entries.sort((a, b) => b.timestamp.localeCompare(a.timestamp));\n\n return entries;\n}\n\n/\n Save an attic entry.\n /\nexport async function saveAtticEntry(entry: AtticEntry): Promise<void> {\n const atticPath = await resolveAtticDir();\n await mkdir(atticPath, { recursive: true });\n\n const filename = getAtticFilename(entry.entity_id, entry.timestamp, entry.field);\n const filepath = join(atticPath, filename);\n // Uses default options which include sortMapEntries: true\n const content = stringifyYaml(entry);\n\n await writeFile(filepath, content);\n}\n\n// List attic entries\nclass AtticListHandler extends BaseCommand {\n async run(id?: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const filterId = id ? normalizeIssueId(id) : undefined;\n const entries = await listAtticEntries(filterId);\n\n // Load ID mapping and config for display\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n const mapping = await loadIdMapping(dataSyncDir);\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const showDebug = this.ctx.debug;\n\n const output = entries.map((e) => ({\n id: showDebug\n ? formatDebugId(e.entity_id, mapping, prefix)\n : formatDisplayId(e.entity_id, mapping, prefix),\n timestamp: e.timestamp,\n field: e.field,\n winner: e.winner_source,\n }));\n\n this.output.data(output, () => {\n const colors = this.output.getColors();\n if (output.length === 0) {\n console.log('No attic entries');\n return;\n }\n console.log(\n `${colors.dim('ID'.padEnd(12))}${colors.dim('WHEN'.padEnd(14))}${colors.dim('FIELD'.padEnd(14))}${colors.dim('WINNER')}`,\n );\n for (const entry of output) {\n const when = formatTimestampAgo(entry.timestamp) ?? entry.timestamp;\n console.log(\n `${colors.id(entry.id.padEnd(12))}${when.padEnd(14)}${entry.field.padEnd(14)}${entry.winner}`,\n );\n }\n });\n }\n}\n\n// Show attic entry\nclass AtticShowHandler extends BaseCommand {\n async run(id: string, timestamp: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const normalizedId = normalizeIssueId(id);\n const entries = await listAtticEntries(normalizedId);\n\n // Find entry matching timestamp (approximate match for different formats)\n const entry = entries.find(\n (e) => e.timestamp === timestamp \|\| e.timestamp.replace(/:/g, '-') === timestamp,\n );\n\n if (!entry) {\n throw new NotFoundError('Attic entry', `${id} at ${timestamp}`);\n }\n\n // Load ID mapping and config for display\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n const mapping = await loadIdMapping(dataSyncDir);\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const showDebug = this.ctx.debug;\n const displayId = showDebug\n ? formatDebugId(entry.entity_id, mapping, prefix)\n : formatDisplayId(entry.entity_id, mapping, prefix);\n\n this.output.data(entry, () => {\n const colors = this.output.getColors();\n console.log(`${colors.bold('Entity:')} ${displayId}`);\n console.log(`${colors.bold('Timestamp:')} ${entry.timestamp}`);\n console.log(`${colors.bold('Field:')} ${entry.field}`);\n console.log(`${colors.bold('Winner:')} ${entry.winner_source}`);\n console.log(`${colors.bold('Loser:')} ${entry.loser_source}`);\n console.log('');\n console.log(`${colors.bold('Lost value:')}`);\n console.log(entry.lost_value);\n console.log('');\n console.log(`${colors.bold('Context:')}`);\n console.log(` Local version: ${entry.context.local_version}`);\n console.log(` Remote version: ${entry.context.remote_version}`);\n const localAgo = formatTimestampAgo(entry.context.local_updated_at);\n const remoteAgo = formatTimestampAgo(entry.context.remote_updated_at);\n console.log(` Local updated: ${localAgo ?? entry.context.local_updated_at}`);\n console.log(` Remote updated: ${remoteAgo ?? entry.context.remote_updated_at}`);\n });\n }\n}\n\n// Restore from attic\nclass AtticRestoreHandler extends BaseCommand {\n async run(id: string, timestamp: string): Promise<void> {\n const tbdRoot = await requireInit();\n\n const normalizedId = normalizeIssueId(id);\n const entries = await listAtticEntries(normalizedId);\n\n // Find entry matching timestamp\n const entry = entries.find(\n (e) => e.timestamp === timestamp \|\| e.timestamp.replace(/:/g, '-') === timestamp,\n );\n\n if (!entry) {\n throw new NotFoundError('Attic entry', `${id} at ${timestamp}`);\n }\n\n if (this.checkDryRun('Would restore from attic', { id: normalizedId, field: entry.field })) {\n return;\n }\n\n // Load the current issue\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n let issue;\n try {\n issue = await readIssue(dataSyncDir, normalizedId);\n } catch {\n throw new NotFoundError('Issue', id);\n }\n\n // Restore the field value\n const field = entry.field as keyof typeof issue;\n if (field === 'description' \|\| field === 'notes' \|\| field === 'title') {\n (issue as Record<string, unknown>)[field] = entry.lost_value;\n } else {\n throw new ValidationError(`Cannot restore field: ${entry.field}`);\n }\n\n issue.version += 1;\n issue.updated_at = now();\n\n await this.execute(async () => {\n await writeIssue(dataSyncDir, issue);\n }, 'Failed to restore from attic');\n\n // Load ID mapping and config for display\n const mapping = await loadIdMapping(dataSyncDir);\n const config = await readConfig(tbdRoot);\n const prefix = config.display.id_prefix;\n const showDebug = this.ctx.debug;\n const displayId = showDebug\n ? formatDebugId(normalizedId, mapping, prefix)\n : formatDisplayId(normalizedId, mapping, prefix);\n\n this.output.success(`Restored ${entry.field} for ${displayId} from attic entry ${timestamp}`);\n }\n}\n\ninterface AtticListOptions {\n since?: string;\n limit?: string;\n}\n\nconst listAtticCommand = new Command('list')\n .description('List attic entries')\n .argument('[id]', 'Filter by issue ID')\n .option('--since <date>', 'Entries since date')\n .option('--limit <n>', 'Limit results')\n .action(async (id, options: AtticListOptions, command) => {\n const handler = new AtticListHandler(command);\n await handler.run(id);\n });\n\nconst showAtticCommand = new Command('show')\n .description('Show attic entry details')\n .argument('<id>', 'Issue ID')\n .argument('<timestamp>', 'Entry timestamp')\n .action(async (id, timestamp, _options, command) => {\n const handler = new AtticShowHandler(command);\n await handler.run(id, timestamp);\n });\n\nconst restoreAtticCommand = new Command('restore')\n .description('Restore lost value from attic')\n .argument('<id>', 'Issue ID')\n .argument('<timestamp>', 'Entry timestamp')\n .action(async (id, timestamp, _options, command) => {\n const handler = new AtticRestoreHandler(command);\n await handler.run(id, timestamp);\n });\n\nexport const atticCommand = new Command('attic')\n .description('Manage conflict archive (attic)')\n .addCommand(listAtticCommand)\n .addCommand(showAtticCommand)\n .addCommand(restoreAtticCommand);\n","/\n `tbd import` - Import from Beads or other sources.\n \n See: tbd-design.md §5.1 Import Strategy\n /\n\nimport { Command } from 'commander';\nimport { readFile, access } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, ValidationError, NotFoundError } from '../lib/errors.js';\nimport { writeIssue, listIssues } from '../../file/storage.js';\nimport {\n generateInternalId,\n extractShortId,\n extractUlidFromInternalId,\n makeInternalId,\n extractPrefix,\n} from '../../lib/ids.js';\nimport {\n loadIdMapping,\n saveIdMapping,\n addIdMapping,\n hasShortId,\n generateUniqueShortId,\n} from '../../file/id-mapping.js';\nimport { IssueStatus, IssueKind } from '../../lib/schemas.js';\nimport type { Issue, IssueStatusType, IssueKindType, DependencyType } from '../../lib/types.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { now, normalizeTimestamp } from '../../utils/time-utils.js';\nimport { readConfig, writeConfig } from '../../file/config.js';\nimport {\n importFromWorkspace,\n type ImportOptions as WorkspaceImportOptions,\n} from '../../file/workspace.js';\n\ninterface ImportOptions {\n beadsDir?: string;\n merge?: boolean;\n verbose?: boolean;\n validate?: boolean;\n // Workspace import options\n workspace?: string;\n dir?: string;\n outbox?: boolean;\n clearOnSuccess?: boolean;\n}\n\ninterface ValidationIssue {\n beadsId: string;\n tbdId?: string;\n issue: string;\n severity: 'error' \| 'warning';\n}\n\n/\n Beads issue structure (from JSONL export).\n /\ninterface BeadsIssue {\n id: string;\n title: string;\n description?: string;\n notes?: string;\n type?: string;\n issue_type?: string;\n status: string;\n priority?: number;\n assignee?: string;\n labels?: string[];\n dependencies?: { type: string; target: string }[];\n created_at: string;\n updated_at: string;\n closed_at?: string;\n close_reason?: string;\n due?: string;\n defer?: string;\n parent?: string;\n}\n\n/\n BeadsTotbd mapping: maps beads external ID to tbd internal ID.\n * This is a local structure used during import processing.\n /\ntype BeadsTotbdMapping = Record<string, string>;\n\n/\n Map Beads status to tbd status.\n /\nfunction mapStatus(beadsStatus: string): IssueStatusType {\n const statusMap: Record<string, IssueStatusType> = {\n open: 'open',\n in_progress: 'in_progress',\n blocked: 'blocked',\n deferred: 'deferred',\n done: 'closed', // Beads uses 'done' for completed items\n closed: 'closed',\n tombstone: 'closed',\n };\n const result = IssueStatus.safeParse(statusMap[beadsStatus] ?? beadsStatus);\n return result.success ? result.data : 'open';\n}\n\n/\n Map Beads issue type to tbd kind.\n /\nfunction mapKind(beadsType?: string): IssueKindType {\n const kindMap: Record<string, IssueKindType> = {\n bug: 'bug',\n feature: 'feature',\n task: 'task',\n epic: 'epic',\n chore: 'chore',\n };\n if (!beadsType) return 'task';\n const result = IssueKind.safeParse(kindMap[beadsType] ?? beadsType);\n return result.success ? result.data : 'task';\n}\n\n/\n Convert Beads issue to tbd issue.\n /\nfunction convertIssue(beads: BeadsIssue, tbdId: string, depMapping: BeadsTotbdMapping): Issue {\n // Convert dependencies, translating IDs\n const dependencies: DependencyType[] = [];\n if (beads.dependencies) {\n for (const dep of beads.dependencies) {\n if (dep.type === 'blocks' \|\| dep.type === 'blocked_by') {\n const targetId = depMapping[dep.target];\n if (targetId) {\n // \"blocked_by\" in Beads means the target blocks this issue\n // In tbd, we only have \"blocks\", so we need to handle this carefully\n // For now, we store \"blocks\" dependencies directly\n if (dep.type === 'blocks') {\n dependencies.push({ type: 'blocks', target: targetId });\n }\n // Note: blocked_by would need to be added to the target issue's dependencies\n }\n }\n }\n }\n\n return {\n type: 'is',\n id: tbdId,\n version: 1,\n kind: mapKind(beads.type ?? beads.issue_type),\n title: beads.title,\n description: beads.description,\n notes: beads.notes,\n status: mapStatus(beads.status),\n priority: beads.priority ?? 2,\n assignee: beads.assignee,\n labels: beads.labels ?? [],\n dependencies,\n created_at: normalizeTimestamp(beads.created_at) ?? now(),\n updated_at: normalizeTimestamp(beads.updated_at) ?? now(),\n closed_at: normalizeTimestamp(beads.closed_at),\n close_reason: beads.close_reason ?? null,\n due_date: normalizeTimestamp(beads.due),\n deferred_until: normalizeTimestamp(beads.defer),\n parent_id: beads.parent ? depMapping[beads.parent] : null,\n extensions: {\n beads: {\n original_id: beads.id,\n imported_at: now(),\n },\n },\n };\n}\n\nclass ImportHandler extends BaseCommand {\n private dataSyncDir = '';\n\n async run(file: string \| undefined, options: ImportOptions): Promise<void> {\n // Check if this is a workspace import\n const isWorkspaceImport =\n options.workspace != null \|\| options.dir != null \|\| options.outbox === true;\n\n if (isWorkspaceImport) {\n await this.importFromWorkspaceCmd(options);\n return;\n }\n\n // Validate input first\n if (!file && !options.validate) {\n throw new ValidationError(\n 'Provide a JSONL file path to import.\\n\\n' +\n 'For Beads migration, use: tbd setup --from-beads\\n' +\n 'For workspace import, use: tbd import --workspace=<name> or --outbox',\n );\n }\n\n // Handle validation mode - requires init\n if (options.validate) {\n await requireInit();\n this.dataSyncDir = await resolveDataSyncDir();\n await this.validateImport(options);\n return;\n }\n\n // File import requires initialization\n if (file) {\n await requireInit();\n this.dataSyncDir = await resolveDataSyncDir();\n await this.importFromFile(file, options);\n }\n }\n\n /\n Import issues from a workspace.\n /\n private async importFromWorkspaceCmd(options: ImportOptions): Promise<void> {\n const tbdRoot = await requireInit();\n this.dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n const wsOptions: WorkspaceImportOptions = {\n workspace: options.workspace,\n dir: options.dir,\n outbox: options.outbox,\n clearOnSuccess: options.clearOnSuccess,\n };\n\n if (this.checkDryRun('Would import from workspace', wsOptions)) {\n return;\n }\n\n const spinner = this.output.spinner('Importing from workspace...');\n\n const result = await this.execute(async () => {\n return await importFromWorkspace(tbdRoot, this.dataSyncDir, wsOptions);\n }, 'Failed to import from workspace');\n\n spinner.stop();\n\n if (!result) {\n return;\n }\n\n // Format output\n const sourceName = options.outbox ? 'outbox' : (options.workspace ?? options.dir ?? 'unknown');\n\n this.output.data(\n {\n imported: result.imported,\n conflicts: result.conflicts,\n source: sourceName,\n cleared: result.cleared,\n },\n () => {\n if (result.imported === 0) {\n this.output.info('No issues to import');\n } else {\n this.output.success(`Imported ${result.imported} issue(s) from ${sourceName}`);\n if (result.conflicts > 0) {\n this.output.warn(`${result.conflicts} conflict(s) moved to attic`);\n }\n if (result.cleared) {\n this.output.info(`Workspace \"${sourceName}\" cleared`);\n }\n // Suggest next step\n this.output.info('Run `tbd sync` to commit and push imported issues');\n }\n },\n );\n }\n\n /\n Validate import by comparing Beads source with imported tbd issues.\n * Reports any discrepancies or missing issues.\n /\n private async validateImport(options: ImportOptions): Promise<void> {\n const beadsDir = options.beadsDir ?? '.beads';\n const jsonlPath = join(beadsDir, 'issues.jsonl');\n\n try {\n await access(jsonlPath);\n } catch {\n throw new NotFoundError('Beads database', `${beadsDir} (use --beads-dir to specify)`);\n }\n\n console.log('Validating import...\\n');\n\n // Load Beads issues\n const content = await readFile(jsonlPath, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l);\n const beadsIssues: BeadsIssue[] = [];\n\n for (const line of lines) {\n try {\n const issue = JSON.parse(line) as BeadsIssue;\n if (issue.id && issue.title) {\n beadsIssues.push(issue);\n }\n } catch {\n // Skip invalid lines\n }\n }\n\n // Load tbd issues and short ID mapping\n const tbdIssues = await this.loadExistingIssues();\n const shortIdMapping = await loadIdMapping(this.dataSyncDir);\n\n // Build mapping from beads ID to tbd internal ID using preserved short IDs\n // e.g., \"tbd-100\" -> extract \"100\" -> lookup in shortIdMapping -> \"is-{ulid}\"\n const beadsTotbd: BeadsTotbdMapping = {};\n const reverseMapping: Record<string, string> = {};\n\n for (const beads of beadsIssues) {\n const shortId = extractShortId(beads.id);\n const ulid = shortIdMapping.shortToUlid.get(shortId);\n if (ulid) {\n const internalId = makeInternalId(ulid);\n beadsTotbd[beads.id] = internalId;\n reverseMapping[internalId] = beads.id;\n }\n }\n\n // Build lookup by tbd ID\n const tbdById = new Map<string, Issue>();\n for (const issue of tbdIssues) {\n tbdById.set(issue.id, issue);\n }\n\n // Validate each Beads issue\n const issues: ValidationIssue[] = [];\n let validCount = 0;\n\n for (const beads of beadsIssues) {\n const tbdId = beadsTotbd[beads.id];\n\n if (!tbdId) {\n issues.push({\n beadsId: beads.id,\n issue: 'Not imported - no ID mapping exists',\n severity: 'error',\n });\n continue;\n }\n\n const tbdIssue = tbdById.get(tbdId);\n if (!tbdIssue) {\n issues.push({\n beadsId: beads.id,\n tbdId,\n issue: 'ID mapping exists but issue file not found',\n severity: 'error',\n });\n continue;\n }\n\n // Validate fields\n const fieldIssues: string[] = [];\n\n if (tbdIssue.title !== beads.title) {\n fieldIssues.push(`title mismatch: \"${tbdIssue.title}\" vs \"${beads.title}\"`);\n }\n\n const expectedStatus = mapStatus(beads.status);\n if (tbdIssue.status !== expectedStatus) {\n fieldIssues.push(`status mismatch: \"${tbdIssue.status}\" vs expected \"${expectedStatus}\"`);\n }\n\n const expectedKind = mapKind(beads.type ?? beads.issue_type);\n if (tbdIssue.kind !== expectedKind) {\n fieldIssues.push(`kind mismatch: \"${tbdIssue.kind}\" vs expected \"${expectedKind}\"`);\n }\n\n if ((beads.priority ?? 2) !== tbdIssue.priority) {\n fieldIssues.push(`priority mismatch: ${tbdIssue.priority} vs ${beads.priority ?? 2}`);\n }\n\n // Check labels\n const beadsLabels = new Set(beads.labels ?? []);\n const tbdLabels = new Set(tbdIssue.labels ?? []);\n const missingLabels = [...beadsLabels].filter((l) => !tbdLabels.has(l));\n if (missingLabels.length > 0) {\n fieldIssues.push(`missing labels: ${missingLabels.join(', ')}`);\n }\n\n if (fieldIssues.length > 0) {\n issues.push({\n beadsId: beads.id,\n tbdId,\n issue: fieldIssues.join('; '),\n severity: 'warning',\n });\n } else {\n validCount++;\n }\n }\n\n // Check for orphaned tbd issues (not in Beads)\n const beadsIds = new Set(beadsIssues.map((b) => b.id));\n for (const tbdIssue of tbdIssues) {\n const beadsId = reverseMapping[tbdIssue.id];\n if (beadsId && !beadsIds.has(beadsId)) {\n issues.push({\n beadsId,\n tbdId: tbdIssue.id,\n issue: 'tbd issue has mapping but Beads issue no longer exists',\n severity: 'warning',\n });\n }\n }\n\n // Report results\n const errors = issues.filter((i) => i.severity === 'error');\n const warnings = issues.filter((i) => i.severity === 'warning');\n\n console.log('Validation Results');\n console.log('─'.repeat(60));\n console.log(`Total Beads issues: ${beadsIssues.length}`);\n console.log(`Total tbd issues: ${tbdIssues.length}`);\n console.log(`Valid imports: ${validCount}`);\n console.log(`Errors: ${errors.length}`);\n console.log(`Warnings: ${warnings.length}`);\n console.log('─'.repeat(60));\n\n if (errors.length > 0) {\n console.log('\\nErrors:');\n for (const err of errors) {\n console.log(` ✗ ${err.beadsId}: ${err.issue}`);\n }\n }\n\n if (warnings.length > 0 && options.verbose) {\n console.log('\\nWarnings:');\n for (const warn of warnings) {\n console.log(` ⚠ ${warn.beadsId}: ${warn.issue}`);\n }\n }\n\n console.log();\n if (errors.length === 0 && warnings.length === 0) {\n this.output.success('All imports validated successfully!');\n } else if (errors.length === 0) {\n this.output.warn(`Validation complete with ${warnings.length} warnings`);\n if (!options.verbose) {\n console.log(' Use --verbose to see warning details');\n }\n } else {\n this.output.error(`Validation failed with ${errors.length} errors`);\n }\n\n // Output JSON for programmatic use\n this.output.data({\n valid: validCount,\n errors: errors.length,\n warnings: warnings.length,\n total: beadsIssues.length,\n issues: options.verbose ? issues : undefined,\n });\n }\n\n private async importFromFile(filePath: string, options: ImportOptions): Promise<void> {\n // Check file exists\n try {\n await access(filePath);\n } catch {\n throw new NotFoundError('File', filePath);\n }\n\n if (this.checkDryRun('Would import issues', { file: filePath })) {\n // For dry run, still parse and show what would happen\n const content = await readFile(filePath, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l);\n this.output.info(`Would import ${lines.length} issues from ${filePath}`);\n return;\n }\n\n // Load file content\n const content = await readFile(filePath, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l);\n\n // Parse JSONL\n const beadsIssues: BeadsIssue[] = [];\n for (const line of lines) {\n try {\n const issue = JSON.parse(line) as BeadsIssue;\n if (issue.id && issue.title) {\n beadsIssues.push(issue);\n }\n } catch {\n if (options.verbose) {\n this.output.warn(`Skipping invalid JSON line`);\n }\n }\n }\n\n if (beadsIssues.length === 0) {\n this.output.info('No valid issues found in file');\n return;\n }\n\n // Auto-detect prefix from imported issues and update config if needed\n const detectedPrefix = this.detectPrefixFromIssues(beadsIssues);\n await this.updateConfigPrefixIfNeeded(detectedPrefix);\n\n // Load existing issues and short ID mapping\n const existingIssues = await this.loadExistingIssues();\n const shortIdMapping = await loadIdMapping(this.dataSyncDir);\n\n // Build lookup maps\n const existingByBeadsId = new Map<string, Issue>();\n const existingByShortId = new Map<string, Issue>();\n\n // Build reverse lookup from extensions and from short ID mapping\n for (const issue of existingIssues) {\n const beadsExt = issue.extensions?.beads as { original_id?: string } \| undefined;\n if (beadsExt?.original_id) {\n existingByBeadsId.set(beadsExt.original_id, issue);\n }\n // Also track by short ID\n const ulid = extractUlidFromInternalId(issue.id);\n const shortId = shortIdMapping.ulidToShort.get(ulid);\n if (shortId) {\n existingByShortId.set(shortId, issue);\n }\n }\n\n // Build beads-to-tbd mapping, preserving original short IDs\n // e.g., \"tbd-100\" preserves \"100\" as the short ID\n const beadsTotbd: BeadsTotbdMapping = {};\n\n // First pass: assign IDs to all issues (needed for dependency translation)\n for (const beads of beadsIssues) {\n // Extract the short ID from beads ID (e.g., \"tbd-100\" -> \"100\")\n const shortId = extractShortId(beads.id);\n\n // Check if we already have this issue by beads ID (from previous import)\n const existingByBeads = existingByBeadsId.get(beads.id);\n if (existingByBeads) {\n beadsTotbd[beads.id] = existingByBeads.id;\n continue;\n }\n\n // Check if we already have a mapping for this short ID\n const existingByShort = existingByShortId.get(shortId);\n if (existingByShort) {\n beadsTotbd[beads.id] = existingByShort.id;\n continue;\n }\n\n // Check if the short ID is already in the mapping (collision check)\n if (hasShortId(shortIdMapping, shortId)) {\n // Short ID already exists but for a different issue - generate a new one\n if (options.verbose) {\n this.output.warn(\n `Short ID \"${shortId}\" already exists, generating new ID for ${beads.id}`,\n );\n }\n const internalId = generateInternalId();\n beadsTotbd[beads.id] = internalId;\n // Generate a random short ID since the original is taken\n const ulid = extractUlidFromInternalId(internalId);\n const newShortId = generateUniqueShortId(shortIdMapping);\n addIdMapping(shortIdMapping, ulid, newShortId);\n } else {\n // Create new mapping, preserving the original short ID\n const internalId = generateInternalId();\n beadsTotbd[beads.id] = internalId;\n const ulid = extractUlidFromInternalId(internalId);\n addIdMapping(shortIdMapping, ulid, shortId);\n }\n }\n\n // Second pass: convert and save issues\n let imported = 0;\n let skipped = 0;\n let merged = 0;\n\n for (const beads of beadsIssues) {\n const tbdId = beadsTotbd[beads.id]!;\n const existing = existingByBeadsId.get(beads.id);\n\n if (existing && !options.merge) {\n // Check if Beads is newer\n if (new Date(beads.updated_at) <= new Date(existing.updated_at)) {\n skipped++;\n continue;\n }\n }\n\n const issue = convertIssue(beads, tbdId, beadsTotbd);\n\n if (existing) {\n // Merge: keep higher version, update fields\n issue.version = existing.version + 1;\n merged++;\n } else {\n imported++;\n }\n\n try {\n await writeIssue(this.dataSyncDir, issue);\n } catch (error) {\n if (options.verbose) {\n this.output.warn(`Failed to write issue ${beads.id}: ${(error as Error).message}`);\n }\n }\n }\n\n // Save updated short ID mapping (no separate beads.yml needed - IDs are preserved)\n await saveIdMapping(this.dataSyncDir, shortIdMapping);\n\n const result = { imported, skipped, merged, total: beadsIssues.length };\n\n this.output.data(result, () => {\n this.output.success(`Import complete from ${filePath}`);\n console.log(` New issues: ${imported}`);\n console.log(` Merged: ${merged}`);\n console.log(` Skipped: ${skipped}`);\n });\n }\n\n private async loadExistingIssues(): Promise<Issue[]> {\n try {\n return await listIssues(this.dataSyncDir);\n } catch {\n return [];\n }\n }\n\n /\n Detect the prefix used by beads issues from a file path.\n * Reads the first few issues and extracts the common prefix pattern.\n * Falls back to 'tbd' if no consistent prefix is found.\n /\n private async detectBeadsPrefix(jsonlPath: string): Promise<string> {\n try {\n const content = await readFile(jsonlPath, 'utf-8');\n const lines = content\n .trim()\n .split('\\n')\n .filter((l) => l)\n .slice(0, 10); // Sample first 10 issues\n\n const issues: BeadsIssue[] = [];\n for (const line of lines) {\n try {\n const issue = JSON.parse(line) as BeadsIssue;\n if (issue.id) {\n issues.push(issue);\n }\n } catch {\n // Skip invalid lines\n }\n }\n\n return this.detectPrefixFromIssues(issues);\n } catch {\n return 'tbd'; // Default fallback\n }\n }\n\n /\n Detect the prefix used by a list of beads issues.\n * Extracts the common prefix pattern from issue IDs.\n * Falls back to 'tbd' if no consistent prefix is found.\n /\n private detectPrefixFromIssues(issues: BeadsIssue[]): string {\n const prefixes = new Map<string, number>();\n\n for (const issue of issues.slice(0, 10)) {\n // Sample first 10\n if (issue.id) {\n const prefix = extractPrefix(issue.id);\n if (prefix) {\n prefixes.set(prefix, (prefixes.get(prefix) ?? 0) + 1);\n }\n }\n }\n\n // Find the most common prefix\n let maxCount = 0;\n let mostCommonPrefix = 'tbd';\n for (const [prefix, count] of prefixes) {\n if (count > maxCount) {\n maxCount = count;\n mostCommonPrefix = prefix;\n }\n }\n\n return mostCommonPrefix;\n }\n\n /\n Update config prefix if it differs from the detected prefix.\n * Returns true if prefix was updated.\n /\n private async updateConfigPrefixIfNeeded(detectedPrefix: string): Promise<boolean> {\n const cwd = process.cwd();\n try {\n const config = await readConfig(cwd);\n if (config.display.id_prefix !== detectedPrefix) {\n const oldPrefix = config.display.id_prefix;\n config.display.id_prefix = detectedPrefix;\n await writeConfig(cwd, config);\n this.output.info(`Updated ID prefix: ${oldPrefix} → ${detectedPrefix}`);\n return true;\n }\n return false;\n } catch {\n // Config doesn't exist or can't be read - skip update\n return false;\n }\n }\n}\n\nexport const importCommand = new Command('import')\n .description(\n 'Import issues from JSONL file or workspace.\\n' +\n 'For Beads migration, use: tbd setup --from-beads\\n' +\n 'For workspace import, use: tbd import --workspace=<name> or --outbox',\n )\n .argument('[file]', 'JSONL file to import')\n .option('--beads-dir <path>', 'Beads data directory (for --validate)')\n .option('--merge', 'Merge with existing issues instead of skipping duplicates')\n .option('--verbose', 'Show detailed import progress')\n .option('--validate', 'Validate existing import against Beads source')\n // Workspace import options\n .option('--workspace <name>', 'Import from named workspace under .tbd/workspaces/')\n .option('--dir <path>', 'Import from arbitrary directory')\n .option('--outbox', 'Shortcut for --workspace=outbox --clear-on-success')\n .option('--clear-on-success', 'Delete workspace after successful import')\n .action(async (file, options, command) => {\n const handler = new ImportHandler(command);\n await handler.run(file, options);\n });\n","/\n `tbd docs` - Display CLI documentation.\n \n Shows the bundled documentation for tbd CLI.\n * Documentation can be filtered by section.\n \n Note: Doc cache sync functionality has moved to `tbd sync --docs`.\n * See: docs/project/specs/active/plan-2026-01-29-unified-sync-command.md\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { fileURLToPath } from 'node:url';\nimport { dirname, join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError, NotFoundError } from '../lib/errors.js';\nimport { renderMarkdown } from '../lib/output.js';\nimport type { DocSection } from '../../lib/types.js';\nimport GithubSlugger from 'github-slugger';\n\n/\n Get the path to the bundled docs file.\n * The docs file is copied to dist/docs/ during build.\n /\nfunction getDocsPath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // Docs are at dist/docs/tbd-docs.md (same level as the bundle)\n return join(__dirname, 'docs', 'tbd-docs.md');\n}\n\ninterface DocsOptions {\n section?: string;\n list?: boolean;\n all?: boolean;\n}\n\nclass DocsHandler extends BaseCommand {\n async run(topic: string \| undefined, options: DocsOptions): Promise<void> {\n let content: string;\n try {\n content = await readFile(getDocsPath(), 'utf-8');\n } catch {\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // During development: src/cli/commands -> packages/tbd/docs\n const devPath = join(__dirname, '..', '..', '..', 'docs', 'tbd-docs.md');\n content = await readFile(devPath, 'utf-8');\n } catch {\n throw new CLIError('Documentation file not found. Please rebuild the CLI.');\n }\n }\n\n const sections = this.extractSections(content);\n\n // Show comprehensive documentation listing\n if (options.all) {\n await this.showComprehensiveListing();\n return;\n }\n\n // List available sections\n if (options.list) {\n this.output.data(sections, () => {\n const colors = this.output.getColors();\n console.log(colors.bold('Available documentation sections:'));\n console.log('');\n // Calculate max slug length for alignment\n const maxSlugLen = Math.max(...sections.map((s) => s.slug.length));\n for (const section of sections) {\n const paddedSlug = section.slug.padEnd(maxSlugLen);\n console.log(` ${colors.id(paddedSlug)} ${section.title}`);\n }\n console.log('');\n console.log(`Use ${colors.dim('tbd docs <topic>')} to view a specific section.`);\n });\n return;\n }\n\n // Determine which section to show (positional topic takes precedence)\n const sectionQuery = topic ?? options.section;\n\n // Filter by section if specified\n if (sectionQuery) {\n const sectionContent = this.extractSection(content, sections, sectionQuery);\n if (!sectionContent) {\n throw new NotFoundError(\n 'Section',\n `\"${sectionQuery}\" (use --list to see available sections)`,\n );\n }\n content = sectionContent;\n }\n\n // Output the documentation with Markdown colorization\n console.log(renderMarkdown(content, this.ctx.color));\n }\n\n /\n Extract section metadata from the documentation.\n * Sections are top-level headers (## ).\n * Returns title and slugified ID for each section.\n /\n private extractSections(content: string): DocSection[] {\n const sections: DocSection[] = [];\n const lines = content.split('\\n');\n const slugger = new GithubSlugger();\n\n for (const line of lines) {\n if (line.startsWith('## ')) {\n const title = line.slice(3).trim();\n const slug = slugger.slug(title);\n sections.push({ title, slug });\n }\n }\n\n return sections;\n }\n\n /\n Extract a specific section from the documentation.\n * Matches by slug or partial title match.\n * Returns content from the section header to the next section header.\n /\n private extractSection(content: string, sections: DocSection[], query: string): string \| null {\n const lowerQuery = query.toLowerCase();\n\n // Find matching section - first try exact slug match, then partial title match\n const matchedSection =\n sections.find((s) => s.slug === lowerQuery) ??\n sections.find((s) => s.title.toLowerCase().includes(lowerQuery));\n\n if (!matchedSection) {\n return null;\n }\n\n const lines = content.split('\\n');\n let inSection = false;\n const sectionLines: string[] = [];\n\n for (const line of lines) {\n if (line.startsWith('## ')) {\n if (inSection) {\n // End of our section\n break;\n }\n const currentTitle = line.slice(3).trim();\n if (currentTitle === matchedSection.title) {\n inSection = true;\n sectionLines.push(line);\n }\n } else if (inSection) {\n sectionLines.push(line);\n }\n }\n\n if (sectionLines.length === 0) {\n return null;\n }\n\n // Trim trailing empty lines\n while (sectionLines.length > 0) {\n const lastLine = sectionLines[sectionLines.length - 1];\n if (lastLine?.trim() === '') {\n sectionLines.pop();\n } else {\n break;\n }\n }\n\n return sectionLines.join('\\n');\n }\n\n /\n Show a comprehensive listing of all documentation resources organized by purpose.\n /\n private async showComprehensiveListing(): Promise<void> {\n const colors = this.output.getColors();\n\n console.log(colors.bold('=== tbd Documentation Resources ==='));\n console.log('');\n\n // Getting Started\n console.log(colors.bold('Getting Started:'));\n console.log(' tbd Full orientation and project status');\n console.log(' tbd prime Workflow context and guidance');\n console.log(' tbd prime --brief Quick reference (~35 lines)');\n console.log(' tbd --help CLI command reference');\n console.log('');\n\n // Workflows (Shortcuts)\n console.log(colors.bold('Workflows (Shortcuts):'));\n console.log(' tbd shortcut --list List all available shortcuts');\n console.log(' tbd shortcut new-plan-spec Plan a new feature');\n console.log(' tbd shortcut code-review-and-commit Commit code properly');\n console.log(' tbd shortcut create-or-update-pr-simple Create a pull request');\n console.log('');\n\n // Guidelines\n console.log(colors.bold('Guidelines (Coding Standards):'));\n console.log(' tbd guidelines --list List all available guidelines');\n console.log(' tbd guidelines typescript-rules TypeScript best practices');\n console.log(' tbd guidelines general-tdd-guidelines Test-driven development');\n console.log(' tbd guidelines golden-testing-guidelines Snapshot/golden testing');\n console.log('');\n\n // Templates\n console.log(colors.bold('Templates:'));\n console.log(' tbd template --list List all available templates');\n console.log(' tbd template plan-spec Feature planning template');\n console.log(' tbd template architecture-doc Architecture document template');\n console.log('');\n\n // Design & Reference\n console.log(colors.bold('Design & Reference:'));\n console.log(' tbd docs --list List documentation sections');\n console.log(' tbd design tbd design document');\n console.log(' tbd closing Session closing protocol');\n console.log('');\n\n // Quick Tips\n console.log(colors.bold('Quick Tips:'));\n console.log(' - Run tbd ready to see what issues are available to work on');\n console.log(' - Run tbd shortcut <name> to get step-by-step instructions');\n console.log(' - Run tbd guidelines <name> to get coding standards');\n console.log(' - Always run tbd sync at the end of a session');\n }\n}\n\nexport const docsCommand = new Command('docs')\n .description('Display CLI documentation (use tbd sync --docs for doc cache sync)')\n .argument('[topic]', 'Topic to display (e.g., \"commands\", \"id-system\")')\n .option('--section <name>', 'Show specific section (e.g., \"commands\", \"workflows\")')\n .option('--list', 'List available sections')\n .option('--all', 'Show comprehensive listing of all documentation resources')\n .action(async (topic: string \| undefined, options: DocsOptions, command: Command) => {\n const handler = new DocsHandler(command);\n await handler.run(topic, options);\n });\n","/\n `tbd closing` - Display the session closing protocol reminder.\n \n Shows the close protocol checklist for completing work.\n * Used by the Claude Code PostToolUse hook after git push.\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { fileURLToPath } from 'node:url';\nimport { dirname, join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError } from '../lib/errors.js';\nimport { renderMarkdown } from '../lib/output.js';\n\n/\n Get the path to the bundled closing file.\n * The file is copied to dist/docs/ during build.\n /\nfunction getCloseProtocolPath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n return join(__dirname, 'docs', 'tbd-closing.md');\n}\n\nclass CloseProtocolHandler extends BaseCommand {\n async run(): Promise<void> {\n let content: string;\n try {\n content = await readFile(getCloseProtocolPath(), 'utf-8');\n } catch {\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n const devPath = join(__dirname, '..', '..', 'docs', 'tbd-closing.md');\n content = await readFile(devPath, 'utf-8');\n } catch {\n // Last fallback: repo-level docs\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n const repoPath = join(__dirname, '..', '..', '..', 'docs', 'tbd-closing.md');\n content = await readFile(repoPath, 'utf-8');\n } catch {\n throw new CLIError('Close protocol file not found. Please rebuild the CLI.');\n }\n }\n }\n\n console.log(renderMarkdown(content, this.ctx.color));\n }\n}\n\nexport const closeProtocolCommand = new Command('closing')\n .description('Display the session closing protocol reminder')\n .action(async (_options: unknown, command: Command) => {\n const handler = new CloseProtocolHandler(command);\n await handler.run();\n });\n","/\n `tbd design` - Display design documentation.\n \n Shows the bundled design documentation for tbd,\n * including architecture, design decisions, and Beads comparison.\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { fileURLToPath } from 'node:url';\nimport { dirname, join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError, NotFoundError } from '../lib/errors.js';\nimport { renderMarkdown } from '../lib/output.js';\nimport type { DocSection } from '../../lib/types.js';\nimport GithubSlugger from 'github-slugger';\n\n/\n Get the path to the bundled design doc file.\n * The design doc is copied to dist/docs/ during build.\n /\nfunction getDesignPath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // Docs are at dist/docs/tbd-design.md (same level as the bundle)\n return join(__dirname, 'docs', 'tbd-design.md');\n}\n\ninterface DesignOptions {\n section?: string;\n list?: boolean;\n}\n\nclass DesignHandler extends BaseCommand {\n async run(topic: string \| undefined, options: DesignOptions): Promise<void> {\n let content: string;\n try {\n content = await readFile(getDesignPath(), 'utf-8');\n } catch {\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // During development: src/cli/commands -> packages/tbd/docs\n const devPath = join(__dirname, '..', '..', '..', 'docs', 'tbd-design.md');\n content = await readFile(devPath, 'utf-8');\n } catch {\n throw new CLIError('Design documentation file not found. Please rebuild the CLI.');\n }\n }\n\n const sections = this.extractSections(content);\n\n // List available sections\n if (options.list) {\n this.output.data(sections, () => {\n const colors = this.output.getColors();\n console.log(colors.bold('Available design documentation sections:'));\n console.log('');\n // Calculate max slug length for alignment\n const maxSlugLen = Math.max(...sections.map((s) => s.slug.length));\n for (const section of sections) {\n const paddedSlug = section.slug.padEnd(maxSlugLen);\n console.log(` ${colors.id(paddedSlug)} ${section.title}`);\n }\n console.log('');\n console.log(`Use ${colors.dim('tbd design <topic>')} to view a specific section.`);\n });\n return;\n }\n\n // Determine which section to show (positional topic takes precedence)\n const sectionQuery = topic ?? options.section;\n\n // Filter by section if specified\n if (sectionQuery) {\n const sectionContent = this.extractSection(content, sections, sectionQuery);\n if (!sectionContent) {\n throw new NotFoundError(\n 'Section',\n `\"${sectionQuery}\" (use --list to see available sections)`,\n );\n }\n content = sectionContent;\n }\n\n // Output the documentation with Markdown colorization\n console.log(renderMarkdown(content, this.ctx.color));\n }\n\n /\n Extract section metadata from the documentation.\n * Sections are top-level headers (## ).\n * Returns title and slugified ID for each section.\n /\n private extractSections(content: string): DocSection[] {\n const sections: DocSection[] = [];\n const lines = content.split('\\n');\n const slugger = new GithubSlugger();\n\n for (const line of lines) {\n if (line.startsWith('## ')) {\n const title = line.slice(3).trim();\n const slug = slugger.slug(title);\n sections.push({ title, slug });\n }\n }\n\n return sections;\n }\n\n /\n Extract a specific section from the documentation.\n * Matches by slug or partial title match.\n * Returns content from the section header to the next section header.\n /\n private extractSection(content: string, sections: DocSection[], query: string): string \| null {\n const lowerQuery = query.toLowerCase();\n\n // Find matching section - first try exact slug match, then partial title match\n const matchedSection =\n sections.find((s) => s.slug === lowerQuery) ??\n sections.find((s) => s.title.toLowerCase().includes(lowerQuery));\n\n if (!matchedSection) {\n return null;\n }\n\n const lines = content.split('\\n');\n let inSection = false;\n const sectionLines: string[] = [];\n\n for (const line of lines) {\n if (line.startsWith('## ')) {\n if (inSection) {\n // End of our section\n break;\n }\n const currentTitle = line.slice(3).trim();\n if (currentTitle === matchedSection.title) {\n inSection = true;\n sectionLines.push(line);\n }\n } else if (inSection) {\n sectionLines.push(line);\n }\n }\n\n if (sectionLines.length === 0) {\n return null;\n }\n\n // Trim trailing empty lines\n while (sectionLines.length > 0) {\n const lastLine = sectionLines[sectionLines.length - 1];\n if (lastLine?.trim() === '') {\n sectionLines.pop();\n } else {\n break;\n }\n }\n\n return sectionLines.join('\\n');\n }\n}\n\nexport const designCommand = new Command('design')\n .description('Display design documentation and Beads comparison')\n .argument('[topic]', 'Topic to display (e.g., \"architecture\", \"tbd-vs-beads\")')\n .option('--section <name>', 'Show specific section')\n .option('--list', 'List available sections')\n .action(async (topic: string \| undefined, options: DesignOptions, command: Command) => {\n const handler = new DesignHandler(command);\n await handler.run(topic, options);\n });\n","/\n `tbd readme` - Display the README.\n \n Shows the bundled README (same as the GitHub landing page).\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { fileURLToPath } from 'node:url';\nimport { dirname, join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError } from '../lib/errors.js';\nimport { renderMarkdown } from '../lib/output.js';\n\n/\n Get the path to the bundled README file.\n * The README is copied to dist/docs/ during build.\n /\nfunction getReadmePath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // README is at dist/docs/README.md (same level as the bundle)\n return join(__dirname, 'docs', 'README.md');\n}\n\nclass ReadmeHandler extends BaseCommand {\n async run(): Promise<void> {\n let content: string;\n try {\n content = await readFile(getReadmePath(), 'utf-8');\n } catch {\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // During development without bundle: src/cli/commands -> repo root\n const devPath = join(__dirname, '..', '..', '..', '..', '..', 'README.md');\n content = await readFile(devPath, 'utf-8');\n } catch {\n // Last fallback: try package-level README\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // From packages/tbd/src/cli/commands -> packages/tbd/README.md\n const pkgPath = join(__dirname, '..', '..', '..', 'README.md');\n content = await readFile(pkgPath, 'utf-8');\n } catch {\n throw new CLIError('README file not found. Please rebuild the CLI.');\n }\n }\n }\n\n // Output the README with Markdown colorization\n console.log(renderMarkdown(content, this.ctx.color));\n }\n}\n\nexport const readmeCommand = new Command('readme')\n .description('Display the README (same as GitHub landing page)')\n .action(async (_options: object, command: Command) => {\n const handler = new ReadmeHandler(command);\n await handler.run();\n });\n","/\n `tbd uninstall` - Remove tbd from a repository.\n \n Removes the .tbd directory, worktree, and optionally the sync branch.\n /\n\nimport { Command } from 'commander';\nimport { rm, access, readdir, stat } from 'node:fs/promises';\nimport { execSync } from 'node:child_process';\nimport { join } from 'node:path';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { NotInitializedError, CLIError } from '../lib/errors.js';\nimport { readConfig } from '../../file/config.js';\nimport { SYNC_BRANCH } from '../../lib/paths.js';\n\ninterface UninstallOptions {\n confirm?: boolean;\n keepBranch?: boolean;\n removeRemote?: boolean;\n}\n\nclass UninstallHandler extends BaseCommand {\n async run(options: UninstallOptions): Promise<void> {\n const colors = this.output.getColors();\n\n // Check if tbd is initialized\n try {\n await access('.tbd');\n } catch {\n throw new NotInitializedError('No .tbd directory found. Nothing to uninstall.');\n }\n\n // Read config to get branch info\n let config;\n try {\n config = await readConfig('.');\n } catch {\n config = null;\n }\n\n const syncBranch = config?.sync.branch ?? SYNC_BRANCH;\n const remote = config?.sync.remote ?? 'origin';\n const worktreePath = join('.tbd', 'data-sync-worktree');\n\n // Check what exists\n const items: string[] = [];\n\n // Check worktree\n let worktreeExists = false;\n try {\n await access(worktreePath);\n worktreeExists = true;\n const worktreeStats = await this.getDirectoryStats(worktreePath);\n items.push(` - Worktree: ${worktreePath} (${worktreeStats.files} files)`);\n } catch {\n // Worktree doesn't exist\n }\n\n // Check local sync branch\n let localBranchExists = false;\n try {\n execSync(`git rev-parse --verify ${syncBranch}`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n localBranchExists = true;\n if (!options.keepBranch) {\n items.push(` - Local branch: ${syncBranch}`);\n }\n } catch {\n // Branch doesn't exist\n }\n\n // Check remote sync branch\n let remoteBranchExists = false;\n if (options.removeRemote) {\n try {\n execSync(`git rev-parse --verify ${remote}/${syncBranch}`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n remoteBranchExists = true;\n items.push(` - Remote branch: ${remote}/${syncBranch}`);\n } catch {\n // Remote branch doesn't exist\n }\n }\n\n // Count .tbd contents\n const tbdStats = await this.getDirectoryStats('.tbd');\n items.push(` - Directory: .tbd/ (${tbdStats.files} files)`);\n\n // Show what will be removed\n console.log(colors.bold('The following will be removed:'));\n console.log('');\n for (const item of items) {\n console.log(colors.warn(item));\n }\n console.log('');\n\n if (!options.confirm) {\n console.log(`This action is ${colors.bold('irreversible')}.`);\n console.log('');\n console.log(`To confirm, run: ${colors.dim('tbd uninstall --confirm')}`);\n if (!options.keepBranch && localBranchExists) {\n console.log(\n `To keep the sync branch: ${colors.dim('tbd uninstall --confirm --keep-branch')}`,\n );\n }\n if (!options.removeRemote) {\n console.log(\n `To also remove from remote: ${colors.dim('tbd uninstall --confirm --remove-remote')}`,\n );\n }\n return;\n }\n\n // Check dry-run\n if (this.checkDryRun('Would remove tbd from repository', { items })) {\n return;\n }\n\n // Perform uninstall\n this.output.info('Uninstalling tbd...');\n\n // 1. Remove worktree first (git worktree remove)\n if (worktreeExists) {\n try {\n // First try to remove the worktree through git\n execSync(`git worktree remove --force \"${worktreePath}\"`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n console.log(` ${colors.success('✓')} Removed git worktree`);\n } catch {\n // If git worktree remove fails, force delete the directory\n try {\n await rm(worktreePath, { recursive: true, force: true });\n console.log(` ${colors.success('✓')} Removed worktree directory`);\n } catch {\n console.log(` ${colors.warn('⚠')} Could not remove worktree directory`);\n }\n }\n }\n\n // 2. Remove local sync branch\n if (localBranchExists && !options.keepBranch) {\n try {\n execSync(`git branch -D ${syncBranch}`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n console.log(` ${colors.success('✓')} Removed local branch: ${syncBranch}`);\n } catch {\n console.log(` ${colors.warn('⚠')} Could not remove local branch: ${syncBranch}`);\n }\n }\n\n // 3. Remove remote sync branch\n if (remoteBranchExists && options.removeRemote) {\n try {\n execSync(`git push ${remote} --delete ${syncBranch}`, {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n console.log(` ${colors.success('✓')} Removed remote branch: ${remote}/${syncBranch}`);\n } catch {\n console.log(\n ` ${colors.warn('⚠')} Could not remove remote branch: ${remote}/${syncBranch}`,\n );\n }\n }\n\n // 4. Clean up orphaned worktree references\n try {\n execSync('git worktree prune', {\n encoding: 'utf-8',\n stdio: ['ignore', 'pipe', 'ignore'],\n });\n } catch {\n // Ignore errors\n }\n\n // 5. Remove .tbd directory\n try {\n await rm('.tbd', { recursive: true, force: true });\n console.log(` ${colors.success('✓')} Removed .tbd directory`);\n } catch (error) {\n const message = error instanceof Error ? error.message : String(error);\n throw new CLIError(`Failed to remove .tbd directory: ${message}`);\n }\n\n console.log('');\n this.output.success('tbd has been uninstalled from this repository.');\n\n if (options.keepBranch && localBranchExists) {\n console.log('');\n console.log(colors.dim(`Note: The ${syncBranch} branch was preserved. Delete it with:`));\n console.log(colors.dim(` git branch -D ${syncBranch}`));\n }\n\n if (!options.removeRemote && remoteBranchExists) {\n console.log('');\n console.log(\n colors.dim(\n `Note: The remote ${remote}/${syncBranch} branch was preserved. Delete it with:`,\n ),\n );\n console.log(colors.dim(` git push ${remote} --delete ${syncBranch}`));\n }\n }\n\n /\n Get stats about a directory (file count, size).\n /\n private async getDirectoryStats(dirPath: string): Promise<{ files: number; size: number }> {\n let files = 0;\n let size = 0;\n\n const walk = async (dir: string): Promise<void> => {\n try {\n const entries = await readdir(dir, { withFileTypes: true });\n for (const entry of entries) {\n const fullPath = join(dir, entry.name);\n if (entry.isDirectory()) {\n await walk(fullPath);\n } else {\n files++;\n try {\n const stats = await stat(fullPath);\n size += stats.size;\n } catch {\n // Ignore stat errors\n }\n }\n }\n } catch {\n // Ignore errors\n }\n };\n\n await walk(dirPath);\n return { files, size };\n }\n}\n\nexport const uninstallCommand = new Command('uninstall')\n .description('Remove tbd from this repository')\n .option('--confirm', 'Confirm removal (required to proceed)')\n .option('--keep-branch', 'Keep the local sync branch')\n .option('--remove-remote', 'Also remove the remote sync branch')\n .action(async (options, command) => {\n const handler = new UninstallHandler(command);\n await handler.run(options);\n });\n","/\n DocCache - Path-ordered markdown document cache with lookup.\n \n Provides document lookups for the `tbd shortcut` command, supporting\n * both exact matching by filename and fuzzy matching against metadata.\n \n Also provides auto-sync functionality when docs are stale (per spec).\n \n See: docs/project/specs/active/plan-2026-01-22-doc-cache-abstraction.md\n * See: docs/project/specs/active/plan-2026-01-26-configurable-doc-cache-sync.md\n /\n\nimport { readdir, readFile } from 'node:fs/promises';\nimport { join, basename } from 'node:path';\nimport matter from 'gray-matter';\n\nimport { readConfig, readLocalState, findTbdRoot } from './config.js';\nimport { isDocsStale, syncDocsWithDefaults } from './doc-sync.js';\nimport { estimateTokens } from '../lib/format-utils.js';\n\n// =============================================================================\n// Scoring Constants\n// =============================================================================\n\n/* Score for exact filename match (with or without .md extension) /\nexport const SCORE_EXACT_MATCH = 1.0;\n\n/* Score when query is a prefix of the filename /\nexport const SCORE_PREFIX_MATCH = 0.9;\n\n/* Score when filename contains all query words /\nexport const SCORE_CONTAINS_ALL = 0.8;\n\n/* Base score for partial word matches (multiplied by matched/total ratio) /\nexport const SCORE_PARTIAL_BASE = 0.7;\n\n/* Minimum score threshold to return a fuzzy match result /\nexport const SCORE_MIN_THRESHOLD = 0.5;\n\n// =============================================================================\n// Types\n// =============================================================================\n\n/\n Frontmatter fields used for shortcut documents.\n * These are the expected fields in YAML frontmatter for searchability.\n /\nexport interface DocFrontmatter {\n /* Display title for the shortcut /\n title?: string;\n /* Brief description for fuzzy matching and listing /\n description?: string;\n /* Category for filtering (e.g., planning, review, git) /\n category?: string;\n /* Optional categorization tags /\n tags?: string[];\n}\n\n/\n A cached document loaded from the doc path.\n /\nexport interface CachedDoc {\n /* Full filesystem path to the document /\n path: string;\n /* Filename without extension (used for lookups) /\n name: string;\n /* Parsed YAML frontmatter, if present /\n frontmatter?: DocFrontmatter;\n /* Full file content (including frontmatter for output) /\n content: string;\n /* Which directory in the path this doc came from /\n sourceDir: string;\n /* File size in bytes /\n sizeBytes: number;\n /* Estimated token count (based on ~3.5 chars/token) /\n approxTokens: number;\n}\n\n/\n A document match with relevance score.\n /\nexport interface DocMatch {\n /* The matched document /\n doc: CachedDoc;\n /* Match score: 1.0 = exact, lower = fuzzier /\n score: number;\n}\n\n// =============================================================================\n// DocCache Class\n// =============================================================================\n\n/\n Options for loading the doc cache.\n /\nexport interface DocCacheLoadOptions {\n /* If true, suppress auto-sync output (default: false) /\n quiet?: boolean;\n}\n\n/\n Path-ordered markdown document cache.\n \n Loads all .md files from configured paths in order, with earlier paths\n * taking precedence (like shell $PATH). Supports exact lookup by filename\n * and fuzzy search across filename + frontmatter metadata.\n /\nexport class DocCache {\n /* Active docs (first occurrence of each name) /\n private docs: CachedDoc[] = [];\n\n /* All docs including shadowed ones /\n private allDocs: CachedDoc[] = [];\n\n /* Track names we've seen for shadow detection /\n private seenNames = new Set<string>();\n\n /* Whether the cache has been loaded /\n private loaded = false;\n\n /\n Create a new DocCache.\n \n @param paths - Ordered array of directory paths to search (relative to baseDir)\n * @param baseDir - Base directory for resolving relative paths (default: cwd)\n /\n constructor(\n private readonly paths: string[],\n private readonly baseDir: string = process.cwd(),\n ) {}\n\n /\n Load all documents from configured paths.\n \n Reads all .md files from each path in order. Documents with the same\n * name in later paths are shadowed (tracked but not returned by default).\n \n If auto-sync is enabled and docs are stale, triggers a sync first.\n \n @param options - Load options (quiet: suppress auto-sync output)\n /\n async load(options?: DocCacheLoadOptions): Promise<void> {\n if (this.loaded) return;\n\n // Check for auto-sync before loading\n await this.checkAutoSync(options?.quiet ?? false);\n\n for (const relativePath of this.paths) {\n const dirPath = join(this.baseDir, relativePath);\n await this.loadDirectory(dirPath, relativePath);\n }\n\n this.loaded = true;\n }\n\n /\n Check if docs are stale and auto-sync if needed.\n * Respects the quiet option - only silent when explicitly requested.\n \n Uses syncDocsWithDefaults() to ensure auto-sync also picks up new bundled\n * docs from tbd upgrades, not just existing config entries.\n \n @param quiet - If true, suppress sync output\n /\n private async checkAutoSync(quiet: boolean): Promise<void> {\n try {\n // Find tbd root\n const tbdRoot = await findTbdRoot(this.baseDir);\n if (!tbdRoot) return;\n\n // Read config and state\n const config = await readConfig(tbdRoot);\n const state = await readLocalState(tbdRoot);\n\n // Check if auto-sync is enabled and docs are stale\n const autoSyncHours = config.settings?.doc_auto_sync_hours ?? 24;\n if (!isDocsStale(state.last_doc_sync_at, autoSyncHours)) {\n return;\n }\n\n // Use syncDocsWithDefaults to merge bundled defaults with user config\n // This ensures new bundled docs from tbd upgrades are picked up by auto-sync\n await syncDocsWithDefaults(tbdRoot, { quiet });\n } catch {\n // Auto-sync errors are silent - don't interrupt the user\n }\n }\n\n /\n Load documents from a single directory.\n /\n private async loadDirectory(dirPath: string, sourceDir: string): Promise<void> {\n let entries: string[];\n\n try {\n entries = await readdir(dirPath);\n } catch {\n // Directory doesn't exist or isn't readable - skip silently\n // This is expected when paths haven't been initialized yet\n return;\n }\n\n for (const entry of entries) {\n if (!entry.endsWith('.md')) continue;\n\n const filePath = join(dirPath, entry);\n const name = basename(entry, '.md');\n\n try {\n const content = await readFile(filePath, 'utf-8');\n const frontmatter = this.parseFrontmatterData(content);\n const sizeBytes = Buffer.byteLength(content, 'utf-8');\n const approxTokens = estimateTokens(content);\n\n const doc: CachedDoc = {\n path: filePath,\n name,\n frontmatter,\n content,\n sourceDir,\n sizeBytes,\n approxTokens,\n };\n\n // Track all docs\n this.allDocs.push(doc);\n\n // Only add to active docs if not shadowed\n if (!this.seenNames.has(name)) {\n this.docs.push(doc);\n this.seenNames.add(name);\n }\n } catch (error) {\n // Failed to read or parse file - skip with warning context\n console.warn(`Failed to load shortcut ${filePath}: ${(error as Error).message}`);\n }\n }\n }\n\n /\n Parse YAML frontmatter from content and return typed data.\n * Uses gray-matter for consistent frontmatter parsing.\n /\n private parseFrontmatterData(content: string): DocFrontmatter \| undefined {\n if (!matter.test(content)) {\n return undefined;\n }\n\n try {\n const parsed = matter(content).data as Record<string, unknown>;\n return {\n title: typeof parsed.title === 'string' ? parsed.title : undefined,\n description: typeof parsed.description === 'string' ? parsed.description : undefined,\n category: typeof parsed.category === 'string' ? parsed.category : undefined,\n tags: Array.isArray(parsed.tags)\n ? parsed.tags.filter((t) => typeof t === 'string')\n : undefined,\n };\n } catch {\n // Invalid YAML in frontmatter - return undefined\n return undefined;\n }\n }\n\n /\n Get a document by exact name match.\n \n @param name - Filename to match (with or without .md extension)\n * @returns Match with score SCORE_EXACT_MATCH, or null if not found\n /\n get(name: string): DocMatch \| null {\n // Strip .md extension if present\n const lookupName = name.endsWith('.md') ? name.slice(0, -3) : name;\n\n const doc = this.docs.find((d) => d.name === lookupName);\n if (!doc) return null;\n\n return { doc, score: SCORE_EXACT_MATCH };\n }\n\n /\n Search for documents matching a query.\n \n Performs fuzzy matching against filename, title, and description.\n * Returns matches sorted by score descending.\n \n @param query - Search query string\n * @param limit - Maximum number of results (default: 10)\n * @returns Array of matches sorted by score descending\n /\n search(query: string, limit = 10): DocMatch[] {\n const matches: DocMatch[] = [];\n\n for (const doc of this.docs) {\n const score = this.calculateScore(doc, query);\n if (score >= SCORE_MIN_THRESHOLD) {\n matches.push({ doc, score });\n }\n }\n\n // Sort by score descending, then by name for stability\n matches.sort((a, b) => {\n if (b.score !== a.score) return b.score - a.score;\n return a.doc.name.localeCompare(b.doc.name);\n });\n\n return matches.slice(0, limit);\n }\n\n /\n Calculate relevance score for a document against a query.\n /\n private calculateScore(doc: CachedDoc, query: string): number {\n const queryLower = query.toLowerCase().trim();\n\n // Empty query matches nothing\n if (queryLower.length === 0) {\n return 0;\n }\n\n const nameLower = doc.name.toLowerCase();\n const titleLower = doc.frontmatter?.title?.toLowerCase() ?? '';\n const descLower = doc.frontmatter?.description?.toLowerCase() ?? '';\n\n // Exact match on name\n if (nameLower === queryLower) {\n return SCORE_EXACT_MATCH;\n }\n\n // Prefix match on name\n if (nameLower.startsWith(queryLower)) {\n return SCORE_PREFIX_MATCH;\n }\n\n // Split query into words for multi-word matching\n const queryWords = queryLower.split(/\\s+/).filter((w) => w.length > 0);\n const searchableText = `${nameLower} ${titleLower} ${descLower}`;\n\n // Check if all query words are contained\n const allWordsMatch = queryWords.every((word) => searchableText.includes(word));\n if (allWordsMatch && queryWords.length > 0) {\n return SCORE_CONTAINS_ALL;\n }\n\n // Partial match - count how many words match\n const matchedWords = queryWords.filter((word) => searchableText.includes(word));\n if (matchedWords.length > 0) {\n const ratio = matchedWords.length / queryWords.length;\n return SCORE_PARTIAL_BASE ratio;\n }\n\n return 0;\n }\n\n /*\n List all documents.\n \n @param includeAll - If true, include shadowed documents\n * @returns Array of cached documents\n /\n list(includeAll = false): CachedDoc[] {\n return includeAll ? this.allDocs : this.docs;\n }\n\n /\n Check if a document is shadowed by an earlier path.\n \n @param doc - Document to check\n * @returns True if this doc is shadowed (not the first with this name)\n /\n isShadowed(doc: CachedDoc): boolean {\n const firstDoc = this.docs.find((d) => d.name === doc.name);\n return firstDoc !== doc;\n }\n\n /\n Check if the cache has been loaded.\n /\n isLoaded(): boolean {\n return this.loaded;\n }\n}\n\n// =============================================================================\n// Shortcut Directory Generation\n// =============================================================================\n\n/\n Marker comments for shortcut directory section in skill files.\n * Used for incremental updates without overwriting user content.\n /\nconst SHORTCUT_DIRECTORY_BEGIN = '<!-- BEGIN SHORTCUT DIRECTORY -->';\nconst SHORTCUT_DIRECTORY_END = '<!-- END SHORTCUT DIRECTORY -->';\n\n/\n Build table rows from docs (shared helper for shortcuts and guidelines).\n /\nfunction buildTableRows(docs: CachedDoc[], skipNames: string[] = []): string[] {\n const sortedDocs = [...docs].sort((a, b) => a.name.localeCompare(b.name));\n const rows: string[] = [];\n\n for (const doc of sortedDocs) {\n if (skipNames.includes(doc.name)) {\n continue;\n }\n\n const name = doc.name;\n const description = doc.frontmatter?.description ?? '';\n const escapedDescription = description.replace(/\\\|/g, '\\\\\|');\n\n rows.push(`\| ${name} \| ${escapedDescription} \|`);\n }\n\n return rows;\n}\n\n/\n Generate a formatted markdown directory of shortcuts and guidelines.\n \n The output includes:\n * 1. Marker comments for incremental updates\n * 2. Available Shortcuts section with name and description\n * 3. Available Guidelines section with name and description (if provided)\n \n @param shortcuts - Array of shortcut CachedDoc objects\n * @param guidelines - Optional array of guideline CachedDoc objects\n * @returns Formatted markdown string with shortcuts and guidelines directory\n \n @example\n * const directory = generateShortcutDirectory(shortcutDocs, guidelineDocs);\n * // Returns:\n * // <!-- BEGIN SHORTCUT DIRECTORY -->\n * // ## Available Shortcuts\n * // \| Name \| Description \|\n * // \| --- \| --- \|\n * // \| code-review-and-commit \| Run pre-commit checks, review changes, and commit code \|\n * // ...\n * // ## Available Guidelines\n * // \| Name \| Description \|\n * // \| --- \| --- \|\n * // \| typescript-rules \| TypeScript coding rules and best practices \|\n * // ...\n * // <!-- END SHORTCUT DIRECTORY -->\n /\nexport function generateShortcutDirectory(\n shortcuts: CachedDoc[],\n guidelines: CachedDoc[] = [],\n): string {\n const lines: string[] = [SHORTCUT_DIRECTORY_BEGIN];\n\n // Shortcuts section\n const shortcutRows = buildTableRows(shortcuts, ['skill', 'skill-brief', 'shortcut-explanation']);\n\n lines.push('## Available Shortcuts');\n lines.push('');\n lines.push('Run `tbd shortcut <name>` to use any of these shortcuts:');\n lines.push('');\n\n if (shortcutRows.length === 0) {\n lines.push('No shortcuts available. Create shortcuts in `.tbd/docs/shortcuts/standard/`.');\n } else {\n lines.push('\| Name \| Description \|');\n lines.push('\| --- \| --- \|');\n lines.push(...shortcutRows);\n }\n\n // Guidelines section (if provided)\n if (guidelines.length > 0) {\n const guidelineRows = buildTableRows(guidelines);\n\n if (guidelineRows.length > 0) {\n lines.push('');\n lines.push('## Available Guidelines');\n lines.push('');\n lines.push('Run `tbd guidelines <name>` to apply any of these guidelines:');\n lines.push('');\n lines.push('\| Name \| Description \|');\n lines.push('\| --- \| --- \|');\n lines.push(...guidelineRows);\n }\n }\n\n lines.push('');\n lines.push(SHORTCUT_DIRECTORY_END);\n\n return lines.join('\\n');\n}\n","/\n `tbd prime` - Output dashboard and workflow context for AI agents.\n \n Designed to be called by hooks at session start and before context compaction\n * to ensure agents remember the tbd workflow.\n \n See: tbd-design.md §6.4.3 The tbd prime Command\n /\n\nimport { Command } from 'commander';\nimport { readFile, access } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport { fileURLToPath } from 'node:url';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { findTbdRoot, readConfig, hasSeenWelcome, markWelcomeSeen } from '../../file/config.js';\nimport { stripFrontmatter } from '../../utils/markdown-utils.js';\nimport { VERSION } from '../lib/version.js';\nimport { listIssues } from '../../file/storage.js';\nimport {\n resolveDataSyncDir,\n DEFAULT_SHORTCUT_PATHS,\n DEFAULT_GUIDELINES_PATHS,\n} from '../../lib/paths.js';\nimport { getClaudePaths } from '../../lib/integration-paths.js';\nimport type { Issue } from '../../lib/types.js';\nimport { DocCache, generateShortcutDirectory } from '../../file/doc-cache.js';\n\ninterface PrimeOptions {\n export?: boolean;\n brief?: boolean;\n}\n\n/\n Get the path to the bundled SKILL.md file.\n /\nfunction getSkillPath(): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // Docs are at dist/docs/SKILL.md (same level as the bundle)\n return join(__dirname, 'docs', 'SKILL.md');\n}\n\n/\n Load the skill content from the bundled SKILL.md file with fallbacks.\n * This is exported for use by setup.ts for skill installation.\n /\nexport async function loadSkillContent(): Promise<string> {\n // Try bundled location first (dist/docs/SKILL.md)\n try {\n return await readFile(getSkillPath(), 'utf-8');\n } catch {\n // Fallback: compose from source files during development\n }\n\n // Dev fallback: compose SKILL.md from source files on-the-fly\n // This mirrors what copy-docs.mjs does at build time\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // From packages/tbd/src/cli/commands/ go to packages/tbd/docs/\n const docsDir = join(__dirname, '..', '..', '..', 'docs');\n const headerPath = join(docsDir, 'install', 'claude-header.md');\n const skillPath = join(docsDir, 'shortcuts', 'system', 'skill.md');\n\n const header = await readFile(headerPath, 'utf-8');\n const skill = await readFile(skillPath, 'utf-8');\n return header + skill;\n } catch {\n // If source files not found, throw error\n throw new Error('SKILL.md content file not found. Please rebuild the CLI.');\n }\n}\n\n/\n Load the prime content from the bundled SKILL.md file with fallbacks.\n * Strips frontmatter and adjusts the header for prime output.\n /\nexport async function loadPrimeContent(): Promise<string> {\n const skillContent = await loadSkillContent();\n const content = stripFrontmatter(skillContent);\n\n // Replace header for prime output context\n return content.replace(/^# tbd Workflow\\b/, '# tbd Workflow Context');\n}\n\n/\n Brief prime content for constrained context windows (~35 lines).\n * Includes core workflow, session protocol, and key commands.\n /\nconst BRIEF_SKILL_CONTENT = `## Core Workflow\n\n- Track all task work as issues using tbd\n- Check \\`tbd ready\\` for available work\n- Run \\`tbd sync\\` at session end\n\n## SESSION CLOSING (REQUIRED)\n\n1. git add + git commit\n2. git push\n3. gh pr checks <PR> --watch # WAIT for completion\n4. tbd close/update <id>\n5. tbd sync\n\n## Quick Reference\n\ntbd ready Show issues ready to work\ntbd show <id> View issue details\ntbd create \"title\" Create new issue\ntbd close <id> Mark issue complete\ntbd sync Sync with remote\n\nFor full orientation: tbd prime\n\nIMPORTANT: Use tbd to help the user. Do NOT tell the user to run tbd commands.`;\n\n/\n Value proposition content for not-initialized state.\n /\nconst VALUE_PROPOSITION = `## WHAT tbd IS\n\ntbd is an AI-agent-optimized issue tracker and workflow assistant providing:\n1. Issue Tracking - Track tasks, bugs, features as git-native \"beads\"\n2. Coding Guidelines - Best practices for TypeScript, Python, testing\n3. Spec-Driven Workflows - Write specs, then implement using issues to track each part\n4. Convenience Shortcuts - Pre-built processes for common tasks (commit, PR, review)\n\n## SETUP (AGENT ACTION REQUIRED)\n\ntbd is not yet initialized. To set it up, run:\n\n tbd setup --auto --prefix=<name> # REQUIRES prefix for new projects\n tbd setup --auto # If .tbd/ already exists (prefix already set)\n\nCRITICAL: Never guess a prefix. Always ask the user what prefix they want.\nDo NOT tell the user to run these commands — run them yourself on their behalf.\n\nAfter setup, run 'tbd' again to get project status and workflow guidance.`;\n\nclass PrimeHandler extends BaseCommand {\n async run(options: PrimeOptions): Promise<void> {\n const cwd = process.cwd();\n\n // Find tbd root (supports running from subdirectories)\n const tbdRoot = await findTbdRoot(cwd);\n\n // Not initialized - show setup instructions with value proposition\n if (!tbdRoot) {\n await this.renderNotInitialized();\n return;\n }\n\n // Check for Beads installation alongside tbd and warn\n const beadsWarning = await this.checkForBeads(tbdRoot);\n if (beadsWarning) {\n console.log(beadsWarning);\n console.log('');\n }\n\n // Brief mode: dynamic status + abbreviated skill content\n if (options.brief) {\n await this.renderBriefOrientation(tbdRoot);\n return;\n }\n\n // Check for custom override file\n const customPrimePath = join(tbdRoot, '.tbd', 'PRIME.md');\n\n // If --export, always show default content\n if (!options.export) {\n try {\n await access(customPrimePath);\n const customContent = await readFile(customPrimePath, 'utf-8');\n console.log(customContent);\n return;\n } catch {\n // No custom file, use default full orientation\n }\n }\n\n // Default: full orientation (dynamic status + full skill content)\n await this.renderFullOrientation(tbdRoot);\n }\n\n /\n Render dynamic status section (installation + project status).\n /\n private async renderDynamicStatus(tbdRoot: string): Promise<void> {\n const colors = this.output.getColors();\n\n console.log(`${colors.bold('tbd')} v${VERSION}`);\n console.log('');\n\n // === INSTALLATION ===\n console.log(colors.bold('=== INSTALLATION ==='));\n console.log(`${colors.success('✓')} tbd installed (v${VERSION})`);\n console.log(`${colors.success('✓')} Initialized in this repo`);\n\n // Check if hooks are installed\n const hooksInstalled = await this.checkHooksInstalled(tbdRoot);\n if (hooksInstalled) {\n console.log(`${colors.success('✓')} Hooks installed`);\n } else {\n console.log(`${colors.dim('✗')} Hooks not installed (run: tbd setup --auto)`);\n }\n console.log('');\n\n // === PROJECT STATUS ===\n console.log(colors.bold('=== PROJECT STATUS ==='));\n try {\n const config = await readConfig(tbdRoot);\n console.log(`Repository: ${config.display.id_prefix \|\| 'unknown'}`);\n } catch {\n console.log('Repository: unknown');\n }\n\n // Get issue stats\n const stats = await this.getIssueStats(tbdRoot);\n if (stats) {\n const statusInfo = `${stats.open} open (${stats.inProgress} in_progress)`;\n const blockedInfo = stats.blocked > 0 ? ` \| ${stats.blocked} blocked` : '';\n console.log(`Issues: ${statusInfo}${blockedInfo}`);\n } else {\n console.log('Issues: (none)');\n }\n console.log('');\n }\n\n /\n Render full orientation: dynamic status + full skill content.\n * If the user hasn't seen the welcome message, add a welcome banner.\n /\n private async renderFullOrientation(tbdRoot: string): Promise<void> {\n // Dynamic status\n await this.renderDynamicStatus(tbdRoot);\n\n // Check if this is the user's first time\n const isNewUser = !(await hasSeenWelcome(tbdRoot));\n if (isNewUser) {\n await this.renderWelcomeBanner(tbdRoot);\n }\n\n // Full skill content\n const primeContent = await loadPrimeContent();\n console.log(primeContent);\n\n // Shortcut directory\n const shortcutDir = await this.getShortcutDirectory(tbdRoot);\n if (shortcutDir) {\n console.log('');\n console.log(shortcutDir);\n }\n\n console.log('');\n console.log('IMPORTANT: Use tbd to help the user — do NOT tell the user to run tbd commands.');\n console.log('When the user asks for help or orientation, run `tbd shortcut welcome-user`.');\n }\n\n /\n Render brief orientation: dynamic status + abbreviated skill content.\n /\n private async renderBriefOrientation(tbdRoot: string): Promise<void> {\n // Dynamic status\n await this.renderDynamicStatus(tbdRoot);\n\n // Abbreviated skill content\n console.log(BRIEF_SKILL_CONTENT);\n }\n\n /\n Render output for not initialized state with value proposition.\n /\n private async renderNotInitialized(): Promise<void> {\n const colors = this.output.getColors();\n\n console.log(`${colors.bold('tbd')} v${VERSION}`);\n console.log('');\n console.log(colors.bold('=== NOT INITIALIZED ==='));\n console.log(`${colors.warn('✗')} tbd not initialized in this repository`);\n console.log('');\n\n // Value proposition\n console.log(VALUE_PROPOSITION);\n }\n\n /\n Render a welcome banner for first-time users.\n * Instructs the agent to show the welcome message.\n /\n private async renderWelcomeBanner(tbdRoot: string): Promise<void> {\n const colors = this.output.getColors();\n\n console.log(colors.bold('=== WELCOME (FIRST TIME) ==='));\n console.log('');\n console.log('AGENT INSTRUCTION:');\n console.log('1. Welcome the user! Run `tbd shortcut welcome-user` and follow its');\n console.log(' instructions to give the user a warm orientation.');\n console.log('2. Show the user examples of what THEY can say (e.g. \"there\\'s a bug\",');\n console.log(' \"let\\'s plan a feature\") — do NOT show them tbd CLI commands.');\n console.log(\"3. You use tbd on the user's behalf. The user talks to you naturally;\");\n console.log(' you translate their requests into tbd actions.');\n console.log('');\n\n // Mark welcome as seen\n try {\n await markWelcomeSeen(tbdRoot);\n } catch {\n // Non-critical\n }\n }\n\n /\n Check if Claude Code hooks are installed in project-local .claude/settings.json.\n /\n private async checkHooksInstalled(projectRoot: string): Promise<boolean> {\n const { settings } = getClaudePaths(projectRoot);\n try {\n const content = await readFile(settings, 'utf-8');\n return content.includes('tbd');\n } catch {\n return false;\n }\n }\n\n /\n Get issue statistics.\n /\n private async getIssueStats(tbdRoot: string): Promise<{\n open: number;\n inProgress: number;\n blocked: number;\n } \| null> {\n try {\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n const issues: Issue[] = await listIssues(dataSyncDir);\n\n let open = 0;\n let inProgress = 0;\n const blockedIds = new Set<string>();\n\n // Find blocked issues\n // \"blocks\" dependency: issue A with {type: 'blocks', target: B} means A blocks B\n // B is blocked only if A (the blocker) is not closed\n for (const issue of issues) {\n for (const dep of issue.dependencies) {\n if (dep.type === 'blocks') {\n // Only count target as blocked if the blocker (this issue) is not closed\n if (issue.status !== 'closed') {\n blockedIds.add(dep.target);\n }\n }\n }\n }\n\n // Count by status\n for (const issue of issues) {\n if (issue.status === 'open') {\n open++;\n } else if (issue.status === 'in_progress') {\n inProgress++;\n }\n }\n\n return { open, inProgress, blocked: blockedIds.size };\n } catch {\n return null;\n }\n }\n\n /\n Check if Beads is installed alongside tbd and return a warning message.\n * This helps users who are migrating from Beads to tbd.\n /\n private async checkForBeads(cwd: string): Promise<string \| null> {\n const beadsDir = join(cwd, '.beads');\n try {\n await access(beadsDir);\n // .beads/ exists - warn the agent\n return `⚠️ WARNING: A .beads/ directory was detected alongside .tbd/\n When asked to use beads, use \\`tbd\\` commands, NOT \\`bd\\` commands.\n To complete migration: tbd setup beads --disable --confirm`;\n } catch {\n // No .beads/ directory, no warning needed\n return null;\n }\n }\n\n /\n Generate the shortcut and guidelines directory on-the-fly.\n /\n private async getShortcutDirectory(tbdRoot: string): Promise<string \| null> {\n // Load shortcuts\n const shortcutCache = new DocCache(DEFAULT_SHORTCUT_PATHS, tbdRoot);\n await shortcutCache.load({ quiet: this.ctx.quiet });\n const shortcuts = shortcutCache.list();\n\n // Load guidelines\n const guidelinesCache = new DocCache(DEFAULT_GUIDELINES_PATHS, tbdRoot);\n await guidelinesCache.load({ quiet: this.ctx.quiet });\n const guidelines = guidelinesCache.list();\n\n // If no docs loaded, skip directory\n if (shortcuts.length === 0 && guidelines.length === 0) {\n return null;\n }\n\n return generateShortcutDirectory(shortcuts, guidelines);\n }\n}\n\nexport const primeCommand = new Command('prime')\n .description('Show full orientation with workflow context (default when running `tbd`)')\n .option('--export', 'Output default content (ignores PRIME.md override)')\n .option('--brief', 'Output abbreviated orientation (~35 lines) for constrained contexts')\n .action(async (options: PrimeOptions, command) => {\n const handler = new PrimeHandler(command);\n await handler.run(options);\n });\n","/\n `tbd skill` - Output AI agent skill file content.\n \n See: tbd-design.md §Prime-First Design\n /\n\nimport { Command } from 'commander';\nimport { readFile } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport { fileURLToPath } from 'node:url';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { findTbdRoot } from '../../file/config.js';\nimport { DocCache, generateShortcutDirectory } from '../../file/doc-cache.js';\nimport { DEFAULT_SHORTCUT_PATHS, DEFAULT_GUIDELINES_PATHS } from '../../lib/paths.js';\n\ninterface SkillOptions {\n brief?: boolean;\n}\n\n/\n Get the path to a bundled doc file.\n /\nfunction getDocPath(filename: string): string {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // When bundled, runs from dist/bin.mjs or dist/cli.mjs\n // Docs are at dist/docs/ (same level as the bundle)\n return join(__dirname, 'docs', filename);\n}\n\n/\n Load a doc file content.\n /\nasync function loadDocContent(filename: string): Promise<string> {\n // Try bundled location first\n try {\n return await readFile(getDocPath(filename), 'utf-8');\n } catch {\n // Fallback for development\n }\n\n // Fallback: try to read from source location during development\n try {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // During development: src/cli/commands -> packages/tbd/docs\n const devPath = join(__dirname, '..', '..', '..', 'docs', filename);\n return await readFile(devPath, 'utf-8');\n } catch {\n throw new Error(`${filename} not found. Please rebuild the CLI.`);\n }\n}\n\nclass SkillHandler extends BaseCommand {\n async run(options: SkillOptions): Promise<void> {\n await this.execute(async () => {\n if (options.brief) {\n // Brief mode: just output skill-brief.md\n const content = await loadDocContent('skill-brief.md');\n console.log(content);\n return;\n }\n\n // Full mode: compose header + skill.md + shortcut directory\n const content = await this.composeFullSkill();\n console.log(content);\n }, 'Failed to output skill content');\n }\n\n /\n Compose the full skill output by combining:\n * 1. Claude header (YAML frontmatter)\n * 2. Base skill content (skill.md from shortcuts/system)\n * 3. Shortcut directory (from cache or generated on-the-fly)\n /\n private async composeFullSkill(): Promise<string> {\n // Load header (YAML frontmatter for Claude)\n const header = await loadDocContent('install/claude-header.md');\n\n // Load base skill content\n const baseSkill = await loadDocContent('shortcuts/system/skill.md');\n\n // Get shortcut directory\n const directory = await this.getShortcutDirectory();\n\n // Compose: header + base skill + (optional) shortcut directory\n let result = header + baseSkill;\n if (directory) {\n result = result.trimEnd() + '\\n\\n' + directory;\n }\n\n return result;\n }\n\n /\n Generate the shortcut directory on-the-fly.\n /\n private async getShortcutDirectory(): Promise<string \| null> {\n // Try to find tbd root (may not be initialized)\n const tbdRoot = await findTbdRoot(process.cwd());\n if (!tbdRoot) {\n return null;\n }\n\n // Load shortcuts\n const shortcutCache = new DocCache(DEFAULT_SHORTCUT_PATHS, tbdRoot);\n await shortcutCache.load({ quiet: this.ctx.quiet });\n const shortcuts = shortcutCache.list();\n\n // Load guidelines\n const guidelinesCache = new DocCache(DEFAULT_GUIDELINES_PATHS, tbdRoot);\n await guidelinesCache.load({ quiet: this.ctx.quiet });\n const guidelines = guidelinesCache.list();\n\n // If no docs loaded, skip directory\n if (shortcuts.length === 0 && guidelines.length === 0) {\n return null;\n }\n\n return generateShortcutDirectory(shortcuts, guidelines);\n }\n}\n\nexport const skillCommand = new Command('skill')\n .description('Output AI agent skill file content')\n .option('--brief', 'Output condensed workflow rules only')\n .action(async (options: SkillOptions, command) => {\n const handler = new SkillHandler(command);\n await handler.run(options);\n });\n","/\n Agent instruction prompts for document commands.\n \n These prompts are displayed when tbd outputs a document to help\n * the agent understand how to use the content.\n /\n\n/\n Header shown when outputting a shortcut document.\n /\nexport const SHORTCUT_AGENT_HEADER =\n 'Agent instructions: You have activated a shortcut with task instructions. If a user has asked you to do a task that requires this work, follow the instructions below carefully.';\n\n/\n Header shown when outputting a guidelines document.\n /\nexport const GUIDELINES_AGENT_HEADER =\n 'Agent instructions: You have activated a guidelines document. If a user has asked you to apply these rules, read them carefully and apply them. Use beads to track each step.';\n","/\n Add external documentation to the tbd doc cache.\n \n Uses the shared github-fetch utility for URL conversion and fetching.\n * Handles doc-specific concerns: content validation, file writing, and\n * atomic config updates.\n /\n\nimport { join, dirname } from 'node:path';\nimport { mkdir } from 'node:fs/promises';\nimport { writeFile } from 'atomically';\n\nimport { readConfig, writeConfig } from './config.js';\nimport { githubBlobToRawUrl, fetchWithGhFallback } from './github-fetch.js';\nimport { TBD_DOCS_DIR } from '../lib/paths.js';\n\n// =============================================================================\n// Types\n// =============================================================================\n\n/\n The type of document being added.\n /\nexport type DocType = 'guideline' \| 'shortcut' \| 'template';\n\n/\n Options for adding a document.\n /\nexport interface AddDocOptions {\n /* URL to fetch the document from /\n url: string;\n /* Name for the document (without .md extension) /\n name: string;\n /* Type of document /\n docType: DocType;\n}\n\n/\n Result of adding a document.\n /\nexport interface AddDocResult {\n /* The destination path relative to .tbd/docs/ /\n destPath: string;\n /* The raw URL used to fetch the content /\n rawUrl: string;\n /* Whether gh CLI was used as fallback /\n usedGhCli: boolean;\n}\n\n// =============================================================================\n// Content Validation\n// =============================================================================\n\n/\n Validate that fetched content looks like a reasonable markdown document.\n \n @throws If content fails sanity checks\n /\nexport function validateDocContent(content: string, name: string): void {\n if (!content \|\| content.trim().length === 0) {\n throw new Error(`Fetched content for \"${name}\" is empty`);\n }\n\n if (content.length < 10) {\n throw new Error(`Fetched content for \"${name}\" is too short (${content.length} chars)`);\n }\n\n // Check for HTML error pages\n if (content.trimStart().startsWith('<!DOCTYPE') \|\| content.trimStart().startsWith('<html')) {\n throw new Error(\n `Fetched content for \"${name}\" appears to be an HTML page, not a markdown document`,\n );\n }\n\n // Check for binary content (high ratio of non-printable characters)\n const nonPrintable = content.split('').filter((c) => {\n const code = c.charCodeAt(0);\n return code < 32 && code !== 9 && code !== 10 && code !== 13;\n }).length;\n if (nonPrintable / content.length > 0.1) {\n throw new Error(`Fetched content for \"${name}\" appears to be binary, not a text document`);\n }\n}\n\n// =============================================================================\n// Doc Type to Path Mapping\n// =============================================================================\n\n/\n Get the destination subdirectory for a doc type.\n /\nexport function getDocTypeSubdir(docType: DocType): string {\n switch (docType) {\n case 'guideline':\n return 'guidelines';\n case 'shortcut':\n return 'shortcuts/custom';\n case 'template':\n return 'templates';\n }\n}\n\n// =============================================================================\n// Main Add Function\n// =============================================================================\n\n/\n Add an external document to the tbd doc cache.\n \n This function:\n * 1. Converts GitHub blob URLs to raw URLs\n * 2. Fetches the content (with gh CLI fallback on 403)\n * 3. Validates the content looks like markdown\n * 4. Writes the file to .tbd/docs/{type}/{name}.md\n * 5. Atomically updates the config to include the new source\n \n @throws If fetching, validation, or config update fails\n /\nexport async function addDoc(tbdRoot: string, options: AddDocOptions): Promise<AddDocResult> {\n const { url, name, docType } = options;\n\n // Normalize name (strip .md if provided)\n const cleanName = name.endsWith('.md') ? name.slice(0, -3) : name;\n const filename = `${cleanName}.md`;\n const subdir = getDocTypeSubdir(docType);\n const destPath = `${subdir}/${filename}`;\n const rawUrl = githubBlobToRawUrl(url);\n\n // Fetch content\n const { content, usedGhCli } = await fetchWithGhFallback(url);\n\n // Validate content\n validateDocContent(content, cleanName);\n\n // Write file to .tbd/docs/{subdir}/{name}.md\n const fullPath = join(tbdRoot, TBD_DOCS_DIR, destPath);\n await mkdir(dirname(fullPath), { recursive: true });\n await writeFile(fullPath, content);\n\n // Atomically update config\n const config = await readConfig(tbdRoot);\n config.docs_cache ??= { files: {}, lookup_path: [] };\n config.docs_cache.files ??= {};\n config.docs_cache.files[destPath] = rawUrl;\n\n // Ensure the lookup_path includes the subdir\n const lookupDir = `.tbd/docs/${subdir}`;\n if (!config.docs_cache.lookup_path.includes(lookupDir)) {\n config.docs_cache.lookup_path.push(lookupDir);\n }\n\n await writeConfig(tbdRoot, config);\n\n return { destPath, rawUrl, usedGhCli };\n}\n","/\n `tbd shortcut` - Find and output documentation shortcuts.\n \n Shortcuts are reusable instruction templates for common tasks.\n * Give a name or description and tbd will find the matching shortcut.\n \n See: docs/project/specs/active/plan-2026-01-22-doc-cache-abstraction.md\n /\n\nimport { Command } from 'commander';\nimport pc from 'picocolors';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { SHORTCUT_AGENT_HEADER } from '../lib/doc-prompts.js';\nimport { requireInit, CLIError } from '../lib/errors.js';\nimport { DocCache, SCORE_PREFIX_MATCH } from '../../file/doc-cache.js';\nimport { addDoc } from '../../file/doc-add.js';\nimport { readConfig } from '../../file/config.js';\nimport { DEFAULT_SHORTCUT_PATHS } from '../../lib/paths.js';\nimport { truncate } from '../../lib/truncate.js';\nimport { formatDocSize } from '../../lib/format-utils.js';\nimport { getTerminalWidth } from '../lib/output.js';\n\ninterface ShortcutOptions {\n list?: boolean;\n all?: boolean;\n refresh?: boolean;\n quiet?: boolean;\n category?: string;\n add?: string;\n name?: string;\n}\n\n/\n Shortcut categories for filtering.\n * Categories are read from frontmatter.\n /\ntype ShortcutCategory =\n \| 'planning'\n \| 'documentation'\n \| 'review'\n \| 'git'\n \| 'cleanup'\n \| 'session'\n \| 'meta';\n\nclass ShortcutHandler extends BaseCommand {\n async run(query: string \| undefined, options: ShortcutOptions): Promise<void> {\n await this.execute(async () => {\n // Add mode\n if (options.add) {\n if (!options.name) {\n throw new CLIError('--name is required when using --add');\n }\n const tbdRoot = await requireInit();\n console.log(`Adding shortcut: ${options.name}`);\n console.log(` URL: ${options.add}`);\n const result = await addDoc(tbdRoot, {\n url: options.add,\n name: options.name,\n docType: 'shortcut',\n });\n if (result.usedGhCli) {\n console.log(pc.dim(' (fetched via gh CLI due to direct access restriction)'));\n }\n console.log(pc.green(` Added to ${result.destPath}`));\n console.log(pc.green(` Config updated with source: ${result.rawUrl}`));\n console.log('');\n console.log('Run `tbd shortcut --list` to verify.');\n return;\n }\n\n // Get tbd root (supports running from subdirectories)\n const tbdRoot = await requireInit();\n\n // Read config to get lookup paths (fall back to defaults)\n const config = await readConfig(tbdRoot);\n const lookupPaths = config.docs_cache?.lookup_path ?? DEFAULT_SHORTCUT_PATHS;\n\n // Create and load the doc cache with proper base directory\n const cache = new DocCache(lookupPaths, tbdRoot);\n await cache.load({ quiet: this.ctx.quiet });\n\n // Refresh mode: regenerate cache and update skill files\n if (options.refresh) {\n await this.handleRefresh(cache, tbdRoot, options.quiet);\n return;\n }\n\n // List mode\n if (options.list \|\| options.category) {\n await this.handleList(cache, options.all, options.category);\n return;\n }\n\n // No query: show explanation + help\n if (!query) {\n await this.handleNoQuery(cache);\n return;\n }\n\n // Query provided: try exact match first, then fuzzy\n await this.handleQuery(cache, query);\n }, 'Failed to find shortcut');\n }\n\n /\n Handle --refresh mode: no-op since shortcuts are now generated on-the-fly.\n * Kept for backward compatibility.\n /\n private async handleRefresh(cache: DocCache, _tbdRoot: string, quiet?: boolean): Promise<void> {\n const docs = cache.list();\n\n // Count shortcuts (excluding system docs)\n const shortcutCount = docs.filter(\n (d) => d.name !== 'skill' && d.name !== 'skill-brief' && d.name !== 'shortcut-explanation',\n ).length;\n\n if (!quiet) {\n if (this.ctx.json) {\n this.output.data({\n refreshed: true,\n shortcutCount,\n message: 'Shortcuts are now generated on-the-fly (no cache)',\n });\n } else {\n console.log(`${shortcutCount} shortcut(s) available (generated on-the-fly)`);\n }\n }\n }\n\n /\n Handle --list mode: show all available shortcuts.\n /\n private async handleList(\n cache: DocCache,\n includeAll?: boolean,\n category?: string,\n ): Promise<void> {\n let docs = cache.list(includeAll);\n\n // Filter by category if specified (read from frontmatter)\n if (category) {\n docs = docs.filter((d) => {\n const docCategory = d.frontmatter?.category as ShortcutCategory \| undefined;\n return docCategory === category;\n });\n }\n\n if (this.ctx.json) {\n this.output.data(\n docs.map((d) => ({\n name: d.name,\n title: d.frontmatter?.title,\n description: d.frontmatter?.description,\n category: d.frontmatter?.category,\n path: d.path,\n sourceDir: d.sourceDir,\n sizeBytes: d.sizeBytes,\n approxTokens: d.approxTokens,\n shadowed: cache.isShadowed(d),\n })),\n );\n return;\n }\n\n if (docs.length === 0) {\n console.log('No shortcuts found.');\n console.log('Run `tbd setup --auto` to install built-in shortcuts.');\n return;\n }\n\n const maxWidth = getTerminalWidth();\n\n for (const doc of docs) {\n const shadowed = cache.isShadowed(doc);\n const name = doc.name;\n const title = doc.frontmatter?.title;\n const description = doc.frontmatter?.description ?? this.extractFallbackText(doc.content);\n\n if (shadowed) {\n // Muted style for shadowed entries\n const line = `${name} (${doc.sourceDir}) [shadowed]`;\n console.log(pc.dim(truncate(line, maxWidth)));\n } else {\n // Line 1: name (bold) + size/token info (dimmed)\n const sizeInfo = formatDocSize(doc.sizeBytes, doc.approxTokens);\n console.log(`${pc.bold(name)} ${pc.dim(sizeInfo)}`);\n\n // Line 2+: Indented \"Title: Description\"\n // Only truncate fallback body text; never truncate actual title/description\n const hasFrontmatter = title ?? doc.frontmatter?.description;\n const content =\n title && description ? `${title}: ${description}` : (title ?? description ?? '');\n if (content) {\n this.printWrappedDescription(content, maxWidth, !hasFrontmatter);\n }\n }\n }\n }\n\n /\n Extract fallback text from content when no frontmatter description exists.\n * Strips frontmatter and markdown syntax, takes first text, condenses whitespace.\n /\n private extractFallbackText(content: string): string \| undefined {\n // Strip YAML frontmatter if present\n let text = content;\n if (text.startsWith('---')) {\n const endIndex = text.indexOf('---', 3);\n if (endIndex !== -1) {\n text = text.slice(endIndex + 3);\n }\n }\n\n // Strip markdown headers (# Title -> Title)\n text = text.replace(/^#+\\s/gm, '');\n // Strip bold/italic markers\n text = text.replace(/\\\\\|__\|\\\|_/g, '');\n // Strip code blocks\n text = text.replace(/```[\\s\\S]?```/g, '');\n // Strip inline code\n text = text.replace(/`[^`]+`/g, '');\n // Strip blockquotes\n text = text.replace(/^>\\s/gm, '');\n\n // Condense all whitespace to single spaces and trim\n text = text.replace(/\\s+/g, ' ').trim();\n\n // Return first chunk of text (up to ~200 chars for reasonable fallback)\n if (text.length === 0) return undefined;\n return text.slice(0, 200);\n }\n\n /\n Print description indented, wrapped across lines.\n * @param text - Text to print\n * @param maxWidth - Terminal width\n * @param shouldTruncate - If true, truncate to two lines; if false, wrap all lines\n /\n private printWrappedDescription(text: string, maxWidth: number, shouldTruncate: boolean): void {\n const indent = ' ';\n const availableWidth = maxWidth - indent.length;\n\n if (text.length <= availableWidth) {\n // Fits on one line\n console.log(`${indent}${text}`);\n return;\n }\n\n if (shouldTruncate) {\n // Truncate to two lines max (for fallback body text)\n const firstLine = this.wrapAtWord(text, availableWidth);\n const remainder = text.slice(firstLine.length).trimStart();\n console.log(`${indent}${firstLine}`);\n if (remainder) {\n console.log(`${indent}${truncate(remainder, availableWidth)}`);\n }\n } else {\n // Wrap all lines without truncation (for title/description)\n let remaining = text;\n while (remaining.length > 0) {\n if (remaining.length <= availableWidth) {\n console.log(`${indent}${remaining}`);\n break;\n }\n const line = this.wrapAtWord(remaining, availableWidth);\n console.log(`${indent}${line}`);\n remaining = remaining.slice(line.length).trimStart();\n }\n }\n }\n\n /\n Wrap text at word boundary to fit within maxWidth.\n /\n private wrapAtWord(text: string, maxWidth: number): string {\n if (text.length <= maxWidth) return text;\n const lastSpace = text.lastIndexOf(' ', maxWidth);\n if (lastSpace > 0) {\n return text.slice(0, lastSpace);\n }\n return text.slice(0, maxWidth);\n }\n\n /\n Handle no query: show explanation + help.\n /\n private async handleNoQuery(cache: DocCache): Promise<void> {\n // Try to find the shortcut-explanation.md\n const explanation = cache.get('shortcut-explanation');\n if (explanation) {\n console.log(explanation.doc.content);\n } else {\n // Fallback explanation\n console.log('tbd shortcut - Find and output documentation shortcuts');\n console.log('');\n console.log('Usage:');\n console.log(' tbd shortcut <name> Find shortcut by exact name');\n console.log(' tbd shortcut <description> Find shortcut by fuzzy match');\n console.log(' tbd shortcut --list List all available shortcuts');\n console.log(' tbd shortcut --list --all Include shadowed shortcuts');\n console.log('');\n console.log('No shortcuts found. Run `tbd setup --auto` to install built-in shortcuts.');\n }\n }\n\n /\n Handle query: exact match first, then fuzzy.\n /\n private async handleQuery(cache: DocCache, query: string): Promise<void> {\n // Try exact match first\n const exactMatch = cache.get(query);\n if (exactMatch) {\n if (this.ctx.json) {\n this.output.data({\n name: exactMatch.doc.name,\n title: exactMatch.doc.frontmatter?.title,\n score: exactMatch.score,\n content: exactMatch.doc.content,\n });\n } else {\n console.log(SHORTCUT_AGENT_HEADER + '\\n');\n console.log(exactMatch.doc.content);\n }\n return;\n }\n\n // Fuzzy match\n const matches = cache.search(query, 5);\n if (matches.length === 0) {\n console.log(`No shortcut found matching: ${query}`);\n console.log('Run `tbd shortcut --list` to see available shortcuts.');\n return;\n }\n\n const best = matches[0]!;\n // Use PREFIX_MATCH (0.9) as threshold for high confidence\n // Below this, show suggestions instead of auto-selecting\n if (best.score < SCORE_PREFIX_MATCH) {\n // Low confidence - show suggestions instead\n console.log(`No exact match for \"${query}\". Did you mean:`);\n for (const m of matches) {\n const name = m.doc.frontmatter?.title ?? m.doc.name;\n console.log(` ${name} ${pc.dim(`(score: ${m.score.toFixed(2)})`)}`);\n }\n return;\n }\n\n // Good fuzzy match - output it\n if (this.ctx.json) {\n this.output.data({\n name: best.doc.name,\n title: best.doc.frontmatter?.title,\n score: best.score,\n content: best.doc.content,\n });\n } else {\n console.log(SHORTCUT_AGENT_HEADER + '\\n');\n console.log(best.doc.content);\n }\n }\n}\n\nexport const shortcutCommand = new Command('shortcut')\n .description('Find and output documentation shortcuts')\n .argument('[query]', 'Shortcut name or description to search for')\n .option('--list', 'List all available shortcuts')\n .option('--all', 'Include shadowed shortcuts (use with --list)')\n .option(\n '--category <category>',\n 'Filter by category: planning, documentation, review, git, cleanup, session, meta',\n )\n .option('--refresh', 'Refresh the cached shortcut directory')\n .option('--quiet', 'Suppress output (use with --refresh)')\n .option('--add <url>', 'Add a shortcut from a URL')\n .option('--name <name>', 'Name for the added shortcut (required with --add)')\n .action(async (query: string \| undefined, options: ShortcutOptions, command) => {\n const handler = new ShortcutHandler(command);\n await handler.run(query, options);\n });\n","/\n Shared base class for document listing/lookup commands.\n \n Used by shortcuts, guidelines, and templates commands to provide\n * consistent behavior for --list, fuzzy search, and exact match.\n /\n\nimport type { Command } from 'commander';\nimport pc from 'picocolors';\n\nimport { BaseCommand } from './base-command.js';\nimport { GUIDELINES_AGENT_HEADER } from './doc-prompts.js';\nimport { requireInit } from './errors.js';\nimport { DocCache, SCORE_PREFIX_MATCH } from '../../file/doc-cache.js';\nimport { addDoc, type DocType } from '../../file/doc-add.js';\nimport { truncate } from '../../lib/truncate.js';\nimport { formatDocSize } from '../../lib/format-utils.js';\nimport { getTerminalWidth } from './output.js';\n\n/\n Configuration for a doc command handler.\n /\nexport interface DocCommandConfig {\n /* Display name for the doc type (e.g., \"shortcut\", \"guideline\", \"template\") /\n typeName: string;\n /* Plural display name (e.g., \"shortcuts\", \"guidelines\", \"templates\") /\n typeNamePlural: string;\n /* Paths to search for documents (relative to tbd root) /\n paths: string[];\n /* Names to exclude from listings (e.g., system docs) /\n excludeFromList?: string[];\n /* Content to show when no query is provided (optional) /\n noQueryDocName?: string;\n /* The doc type for --add operations /\n docType: DocType;\n}\n\n/\n Common options for doc commands.\n /\nexport interface DocCommandOptions {\n list?: boolean;\n all?: boolean;\n refresh?: boolean;\n quiet?: boolean;\n add?: string;\n name?: string;\n}\n\n/\n Base handler for document commands (shortcuts, guidelines, templates).\n \n Provides shared functionality for:\n * - Listing documents with --list\n * - Exact name lookup\n * - Fuzzy search\n * - Wrapped description output\n /\nexport abstract class DocCommandHandler extends BaseCommand {\n protected cache: DocCache \| null = null;\n protected tbdRoot = '';\n\n constructor(\n command: Command,\n protected readonly config: DocCommandConfig,\n ) {\n super(command);\n }\n\n /\n Initialize the doc cache. Must be called before other operations.\n /\n protected async initCache(): Promise<void> {\n this.tbdRoot = await requireInit();\n this.cache = new DocCache(this.config.paths, this.tbdRoot);\n await this.cache.load({ quiet: this.ctx.quiet });\n }\n\n /\n Handle --list mode: show all available documents.\n /\n protected async handleList(includeAll?: boolean): Promise<void> {\n if (!this.cache) throw new Error('Cache not initialized');\n\n const docs = this.cache.list(includeAll);\n\n if (this.ctx.json) {\n this.output.data(\n docs.map((d) => ({\n name: d.name,\n title: d.frontmatter?.title,\n description: d.frontmatter?.description,\n path: d.path,\n sourceDir: d.sourceDir,\n sizeBytes: d.sizeBytes,\n approxTokens: d.approxTokens,\n shadowed: this.cache!.isShadowed(d),\n })),\n );\n return;\n }\n\n if (docs.length === 0) {\n console.log(`No ${this.config.typeNamePlural} found.`);\n console.log(`Run \\`tbd setup --auto\\` to install built-in ${this.config.typeNamePlural}.`);\n return;\n }\n\n const maxWidth = getTerminalWidth();\n\n for (const doc of docs) {\n const shadowed = this.cache.isShadowed(doc);\n const name = doc.name;\n const title = doc.frontmatter?.title;\n const description = doc.frontmatter?.description ?? this.extractFallbackText(doc.content);\n\n if (shadowed) {\n // Muted style for shadowed entries\n const line = `${name} (${doc.sourceDir}) [shadowed]`;\n console.log(pc.dim(truncate(line, maxWidth)));\n } else {\n // Line 1: name (bold) + size/token info (dimmed)\n const sizeInfo = formatDocSize(doc.sizeBytes, doc.approxTokens);\n console.log(`${pc.bold(name)} ${pc.dim(sizeInfo)}`);\n\n // Line 2+: Indented \"Title: Description\"\n const hasFrontmatter = title ?? doc.frontmatter?.description;\n const content =\n title && description ? `${title}: ${description}` : (title ?? description ?? '');\n if (content) {\n this.printWrappedDescription(content, maxWidth, !hasFrontmatter);\n }\n }\n }\n }\n\n /\n Handle no query: show explanation + help.\n /\n protected async handleNoQuery(): Promise<void> {\n if (!this.cache) throw new Error('Cache not initialized');\n\n // Try to find the explanation doc if configured\n if (this.config.noQueryDocName) {\n const explanation = this.cache.get(this.config.noQueryDocName);\n if (explanation) {\n console.log(explanation.doc.content);\n return;\n }\n }\n\n // Fallback explanation\n const { typeName, typeNamePlural } = this.config;\n console.log(`tbd ${typeNamePlural} - Find and output ${typeNamePlural}`);\n console.log('');\n console.log('Usage:');\n console.log(` tbd ${typeNamePlural} <name> Find ${typeName} by exact name`);\n console.log(` tbd ${typeNamePlural} <description> Find ${typeName} by fuzzy match`);\n console.log(` tbd ${typeNamePlural} --list List all available ${typeNamePlural}`);\n console.log(` tbd ${typeNamePlural} --list --all Include shadowed ${typeNamePlural}`);\n console.log('');\n console.log(\n `No ${typeNamePlural} found. Run \\`tbd setup --auto\\` to install built-in ${typeNamePlural}.`,\n );\n }\n\n /\n Get the agent instruction header for the doc type.\n * Returns undefined if no header should be shown.\n /\n protected getAgentHeader(): string \| undefined {\n if (this.config.typeName === 'guideline') {\n return GUIDELINES_AGENT_HEADER;\n }\n // Templates and other types don't need a header\n return undefined;\n }\n\n /\n Handle query: exact match first, then fuzzy.\n /\n protected async handleQuery(query: string): Promise<void> {\n if (!this.cache) throw new Error('Cache not initialized');\n\n // Try exact match first\n const exactMatch = this.cache.get(query);\n if (exactMatch) {\n if (this.ctx.json) {\n this.output.data({\n name: exactMatch.doc.name,\n title: exactMatch.doc.frontmatter?.title,\n score: exactMatch.score,\n content: exactMatch.doc.content,\n });\n } else {\n const header = this.getAgentHeader();\n if (header) {\n console.log(header + '\\n');\n }\n console.log(exactMatch.doc.content);\n }\n return;\n }\n\n // Fuzzy match\n const matches = this.cache.search(query, 5);\n if (matches.length === 0) {\n console.log(`No ${this.config.typeName} found matching: ${query}`);\n console.log(\n `Run \\`tbd ${this.config.typeNamePlural} --list\\` to see available ${this.config.typeNamePlural}.`,\n );\n return;\n }\n\n const best = matches[0]!;\n // Use PREFIX_MATCH (0.9) as threshold for high confidence\n if (best.score < SCORE_PREFIX_MATCH) {\n // Low confidence - show suggestions instead\n console.log(`No exact match for \"${query}\". Did you mean:`);\n for (const m of matches) {\n const name = m.doc.frontmatter?.title ?? m.doc.name;\n console.log(` ${name} ${pc.dim(`(score: ${m.score.toFixed(2)})`)}`);\n }\n return;\n }\n\n // Good fuzzy match - output it\n if (this.ctx.json) {\n this.output.data({\n name: best.doc.name,\n title: best.doc.frontmatter?.title,\n score: best.score,\n content: best.doc.content,\n });\n } else {\n const header = this.getAgentHeader();\n if (header) {\n console.log(header + '\\n');\n }\n console.log(best.doc.content);\n }\n }\n\n /\n Handle --add mode: add an external document by URL.\n /\n protected async handleAdd(url: string, name: string): Promise<void> {\n if (!this.tbdRoot) {\n this.tbdRoot = await requireInit();\n }\n\n const { typeName, docType } = this.config;\n\n console.log(`Adding ${typeName}: ${name}`);\n console.log(` URL: ${url}`);\n\n const result = await addDoc(this.tbdRoot, { url, name, docType });\n\n if (result.usedGhCli) {\n console.log(pc.dim(' (fetched via gh CLI due to direct access restriction)'));\n }\n\n console.log(pc.green(` Added to ${result.destPath}`));\n console.log(pc.green(` Config updated with source: ${result.rawUrl}`));\n console.log('');\n console.log(`Run \\`tbd ${this.config.typeNamePlural} --list\\` to verify.`);\n }\n\n /\n Extract fallback text from content when no frontmatter description exists.\n /\n protected extractFallbackText(content: string): string \| undefined {\n // Strip YAML frontmatter if present\n let text = content;\n if (text.startsWith('---')) {\n const endIndex = text.indexOf('---', 3);\n if (endIndex !== -1) {\n text = text.slice(endIndex + 3);\n }\n }\n\n // Strip markdown headers (# Title -> Title)\n text = text.replace(/^#+\\s/gm, '');\n // Strip bold/italic markers\n text = text.replace(/\\\\\|__\|\\\|_/g, '');\n // Strip code blocks\n text = text.replace(/```[\\s\\S]?```/g, '');\n // Strip inline code\n text = text.replace(/`[^`]+`/g, '');\n // Strip blockquotes\n text = text.replace(/^>\\s/gm, '');\n\n // Condense all whitespace to single spaces and trim\n text = text.replace(/\\s+/g, ' ').trim();\n\n // Return first chunk of text (up to ~200 chars for reasonable fallback)\n if (text.length === 0) return undefined;\n return text.slice(0, 200);\n }\n\n /\n Print description indented, wrapped across lines.\n /\n protected printWrappedDescription(text: string, maxWidth: number, shouldTruncate: boolean): void {\n const indent = ' ';\n const availableWidth = maxWidth - indent.length;\n\n if (text.length <= availableWidth) {\n console.log(`${indent}${text}`);\n return;\n }\n\n if (shouldTruncate) {\n // Truncate to two lines max (for fallback body text)\n const firstLine = this.wrapAtWord(text, availableWidth);\n const remainder = text.slice(firstLine.length).trimStart();\n console.log(`${indent}${firstLine}`);\n if (remainder) {\n console.log(`${indent}${truncate(remainder, availableWidth)}`);\n }\n } else {\n // Wrap all lines without truncation (for title/description)\n let remaining = text;\n while (remaining.length > 0) {\n if (remaining.length <= availableWidth) {\n console.log(`${indent}${remaining}`);\n break;\n }\n const line = this.wrapAtWord(remaining, availableWidth);\n console.log(`${indent}${line}`);\n remaining = remaining.slice(line.length).trimStart();\n }\n }\n }\n\n /\n Wrap text at word boundary to fit within maxWidth.\n /\n protected wrapAtWord(text: string, maxWidth: number): string {\n if (text.length <= maxWidth) return text;\n const lastSpace = text.lastIndexOf(' ', maxWidth);\n if (lastSpace > 0) {\n return text.slice(0, lastSpace);\n }\n return text.slice(0, maxWidth);\n }\n}\n","/\n `tbd guidelines` - Find and output coding guidelines.\n \n Guidelines are reusable coding rules and best practices documents.\n * Give a name or description and tbd will find the matching guideline.\n /\n\nimport { Command } from 'commander';\nimport pc from 'picocolors';\n\nimport { DocCommandHandler, type DocCommandOptions } from '../lib/doc-command-handler.js';\nimport { CLIError } from '../lib/errors.js';\nimport { DEFAULT_GUIDELINES_PATHS } from '../../lib/paths.js';\nimport { truncate } from '../../lib/truncate.js';\nimport { formatDocSize } from '../../lib/format-utils.js';\nimport { getTerminalWidth } from '../lib/output.js';\n\n/\n Guideline categories for filtering.\n /\ntype GuidelineCategory = 'typescript' \| 'python' \| 'testing' \| 'general';\n\n/\n Infer category from guideline name.\n /\nfunction inferGuidelineCategory(name: string): GuidelineCategory \| undefined {\n // TypeScript guidelines\n if (name.startsWith('typescript-')) {\n return 'typescript';\n }\n\n // Python guidelines\n if (name.startsWith('python-')) {\n return 'python';\n }\n\n // Testing guidelines\n if (name.includes('tdd') \|\| name.includes('testing') \|\| name.includes('golden')) {\n return 'testing';\n }\n\n // General guidelines (everything else starting with general- or other general rules)\n if (\n name.startsWith('general-') \|\|\n name.includes('rules') \|\|\n name.includes('patterns') \|\|\n name.startsWith('backward-') \|\|\n name.startsWith('convex-') \|\|\n name.startsWith('release-')\n ) {\n return 'general';\n }\n\n return undefined;\n}\n\ninterface GuidelinesOptions extends DocCommandOptions {\n category?: string;\n add?: string;\n name?: string;\n}\n\nclass GuidelinesHandler extends DocCommandHandler {\n constructor(command: Command) {\n super(command, {\n typeName: 'guideline',\n typeNamePlural: 'guidelines',\n paths: DEFAULT_GUIDELINES_PATHS,\n docType: 'guideline',\n });\n }\n\n async run(query: string \| undefined, options: GuidelinesOptions): Promise<void> {\n await this.execute(async () => {\n // Add mode\n if (options.add) {\n if (!options.name) {\n throw new CLIError('--name is required when using --add');\n }\n await this.handleAdd(options.add, options.name);\n return;\n }\n\n await this.initCache();\n\n // List mode (also triggered by --category)\n if (options.list \|\| options.category) {\n await this.handleListWithCategory(options.all, options.category);\n return;\n }\n\n // No query: show help\n if (!query) {\n await this.handleNoQuery();\n return;\n }\n\n // Query provided: try exact match first, then fuzzy\n await this.handleQuery(query);\n }, 'Failed to find guideline');\n }\n\n /\n Handle --list mode with optional category filtering.\n /\n private async handleListWithCategory(includeAll?: boolean, category?: string): Promise<void> {\n if (!this.cache) throw new Error('Cache not initialized');\n\n let docs = this.cache.list(includeAll);\n\n // Filter by category if specified\n if (category) {\n docs = docs.filter((d) => {\n const docCategory = inferGuidelineCategory(d.name);\n return docCategory === category;\n });\n }\n\n if (this.ctx.json) {\n this.output.data(\n docs.map((d) => ({\n name: d.name,\n title: d.frontmatter?.title,\n description: d.frontmatter?.description,\n category: inferGuidelineCategory(d.name),\n path: d.path,\n sourceDir: d.sourceDir,\n sizeBytes: d.sizeBytes,\n approxTokens: d.approxTokens,\n shadowed: this.cache!.isShadowed(d),\n })),\n );\n return;\n }\n\n if (docs.length === 0) {\n if (category) {\n console.log(`No guidelines found in category: ${category}`);\n console.log('Valid categories: typescript, python, testing, general');\n } else {\n console.log('No guidelines found.');\n console.log('Run `tbd setup --auto` to install built-in guidelines.');\n }\n return;\n }\n\n const maxWidth = getTerminalWidth();\n\n for (const doc of docs) {\n const shadowed = this.cache.isShadowed(doc);\n const name = doc.name;\n const title = doc.frontmatter?.title;\n const description = doc.frontmatter?.description ?? this.extractFallbackText(doc.content);\n\n if (shadowed) {\n const line = `${name} (${doc.sourceDir}) [shadowed]`;\n console.log(pc.dim(truncate(line, maxWidth)));\n } else {\n const sizeInfo = formatDocSize(doc.sizeBytes, doc.approxTokens);\n console.log(`${pc.bold(name)} ${pc.dim(sizeInfo)}`);\n const hasFrontmatter = title ?? doc.frontmatter?.description;\n const content =\n title && description ? `${title}: ${description}` : (title ?? description ?? '');\n if (content) {\n this.printWrappedDescription(content, maxWidth, !hasFrontmatter);\n }\n }\n }\n }\n}\n\nexport const guidelinesCommand = new Command('guidelines')\n .description('Find and output coding guidelines')\n .argument('[query]', 'Guideline name or description to search for')\n .option('--list', 'List all available guidelines')\n .option('--all', 'Include shadowed guidelines (use with --list)')\n .option('--category <category>', 'Filter by category: typescript, python, testing, general')\n .option('--add <url>', 'Add a guideline from a URL')\n .option('--name <name>', 'Name for the added guideline (required with --add)')\n .action(async (query: string \| undefined, options: GuidelinesOptions, command) => {\n const handler = new GuidelinesHandler(command);\n await handler.run(query, options);\n });\n","/\n `tbd template` - Find and output document templates.\n \n Templates are reusable document templates for specs, research briefs, etc.\n * Give a name or description and tbd will find the matching template.\n /\n\nimport { Command } from 'commander';\n\nimport { DocCommandHandler, type DocCommandOptions } from '../lib/doc-command-handler.js';\nimport { CLIError } from '../lib/errors.js';\nimport { DEFAULT_TEMPLATE_PATHS } from '../../lib/paths.js';\n\nclass TemplateHandler extends DocCommandHandler {\n constructor(command: Command) {\n super(command, {\n typeName: 'template',\n typeNamePlural: 'templates',\n paths: DEFAULT_TEMPLATE_PATHS,\n docType: 'template',\n });\n }\n\n async run(query: string \| undefined, options: DocCommandOptions): Promise<void> {\n await this.execute(async () => {\n // Add mode\n if (options.add) {\n if (!options.name) {\n throw new CLIError('--name is required when using --add');\n }\n await this.handleAdd(options.add, options.name);\n return;\n }\n\n await this.initCache();\n\n // List mode\n if (options.list) {\n await this.handleList(options.all);\n return;\n }\n\n // No query: show help\n if (!query) {\n await this.handleNoQuery();\n return;\n }\n\n // Query provided: try exact match first, then fuzzy\n await this.handleQuery(query);\n }, 'Failed to find template');\n }\n}\n\nexport const templateCommand = new Command('template')\n .description('Find and output document templates')\n .argument('[query]', 'Template name or description to search for')\n .option('--list', 'List all available templates')\n .option('--all', 'Include shadowed templates (use with --list)')\n .option('--add <url>', 'Add a template from a URL')\n .option('--name <name>', 'Name for the added template (required with --add)')\n .action(async (query: string \| undefined, options: DocCommandOptions, command) => {\n const handler = new TemplateHandler(command);\n await handler.run(query, options);\n });\n","/\n `tbd setup` - Configure tbd integration with editors and tools.\n \n Requires a git repository. All setup artifacts (.tbd/, .claude/) are placed\n * at the git root, adjacent to .git/. Installation is always project-local —\n * there is no global/user-level install.\n \n Options:\n * - `tbd setup --auto` - Non-interactive setup (for agents/scripts)\n * - `tbd setup --interactive` - Interactive setup with prompts (for humans)\n * - `tbd setup --from-beads` - Migrate from Beads to tbd\n \n See: tbd-design.md §6.4.2 Claude Code Integration\n /\n\nimport { Command } from 'commander';\nimport { readFile, mkdir, access, rm, rename, chmod, readdir } from 'node:fs/promises';\nimport { spawnSync } from 'node:child_process';\nimport { join, dirname } from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { writeFile } from 'atomically';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { CLIError } from '../lib/errors.js';\nimport { loadSkillContent } from './prime.js';\nimport { stripFrontmatter, insertAfterFrontmatter } from '../../utils/markdown-utils.js';\nimport { pathExists } from '../../utils/file-utils.js';\nimport { ensureGitignorePatterns } from '../../utils/gitignore-utils.js';\nimport { type DiagnosticResult, renderDiagnostics } from '../lib/diagnostics.js';\nimport { isValidPrefix, isRecommendedPrefix, getBeadsPrefix } from '../lib/prefix-detection.js';\nimport {\n initConfig,\n isInitialized,\n readConfig,\n readConfigWithMigration,\n findTbdRoot,\n writeConfig,\n markWelcomeSeen,\n} from '../../file/config.js';\nimport { syncDocsWithDefaults } from '../../file/doc-sync.js';\nimport { VERSION } from '../lib/version.js';\nimport {\n TBD_DIR,\n TBD_DOCS_DIR,\n WORKTREE_DIR_NAME,\n DATA_SYNC_DIR_NAME,\n DEFAULT_SHORTCUT_PATHS,\n DEFAULT_GUIDELINES_PATHS,\n TBD_SHORTCUTS_SYSTEM,\n TBD_SHORTCUTS_STANDARD,\n TBD_GUIDELINES_DIR,\n TBD_TEMPLATES_DIR,\n} from '../../lib/paths.js';\nimport { getClaudePaths, getAgentsMdPath, GLOBAL_CLAUDE_DIR } from '../../lib/integration-paths.js';\nimport { initWorktree, isInGitRepo, findGitRoot, checkWorktreeHealth } from '../../file/git.js';\nimport { DocCache, generateShortcutDirectory } from '../../file/doc-cache.js';\n\n/\n Get the shortcut and guidelines directory content for appending to installed skill files.\n * Always generates on-the-fly from installed shortcuts and guidelines.\n \n @param quiet - If true, suppress auto-sync output (default: false)\n /\nasync function getShortcutDirectory(quiet = false): Promise<string \| null> {\n const cwd = process.cwd();\n\n // Try to find tbd root (may not be initialized)\n const tbdRoot = await findTbdRoot(cwd);\n if (!tbdRoot) {\n return null;\n }\n\n // Load shortcuts\n const shortcutCache = new DocCache(DEFAULT_SHORTCUT_PATHS, tbdRoot);\n await shortcutCache.load({ quiet });\n const shortcuts = shortcutCache.list();\n\n // Load guidelines\n const guidelinesCache = new DocCache(DEFAULT_GUIDELINES_PATHS, tbdRoot);\n await guidelinesCache.load({ quiet });\n const guidelines = guidelinesCache.list();\n\n // If no docs loaded, skip directory\n if (shortcuts.length === 0 && guidelines.length === 0) {\n return null;\n }\n\n return generateShortcutDirectory(shortcuts, guidelines);\n}\n\n/\n Get the tbd section content for AGENTS.md (Codex integration).\n * Loads from SKILL.md, strips frontmatter, and wraps in TBD INTEGRATION markers.\n \n @param quiet - If true, suppress auto-sync output (default: false)\n /\nasync function getCodexTbdSection(quiet = false): Promise<string> {\n const skillContent = await loadSkillContent();\n let content = stripFrontmatter(skillContent);\n const directory = await getShortcutDirectory(quiet);\n if (directory) {\n content = content.trimEnd() + '\\n\\n' + directory + '\\n';\n }\n return `<!-- BEGIN TBD INTEGRATION -->\\n${content}<!-- END TBD INTEGRATION -->\\n`;\n}\n\ninterface SetupClaudeOptions {\n check?: boolean;\n remove?: boolean;\n}\n\ninterface SetupCodexOptions {\n check?: boolean;\n remove?: boolean;\n}\n\n/\n Script to ensure tbd CLI is installed and run tbd prime.\n * Installed to project .claude/scripts/tbd-session.sh.\n * Runs on SessionStart and PreCompact to ensure tbd is available and provide orientation.\n \n Usage:\n * tbd-session.sh # Ensure tbd + run tbd prime\n * tbd-session.sh --brief # Ensure tbd + run tbd prime --brief (for PreCompact)\n /\nconst TBD_SESSION_SCRIPT = `#!/bin/bash\n# Ensure tbd CLI is installed and run tbd prime for Claude Code sessions\n# Installed by: tbd setup --auto\n# This script runs on SessionStart and PreCompact\n\n# Get npm global bin directory (if npm is available)\nNPM_GLOBAL_BIN=\"\"\nif command -v npm &> /dev/null; then\n NPM_PREFIX=$(npm config get prefix 2>/dev/null)\n if [ -n \"$NPM_PREFIX\" ] && [ -d \"$NPM_PREFIX/bin\" ]; then\n NPM_GLOBAL_BIN=\"$NPM_PREFIX/bin\"\n fi\nfi\n\n# Add common binary locations to PATH (persists for entire script)\n# Include npm global bin if found\nexport PATH=\"$NPM_GLOBAL_BIN:$HOME/.local/bin:$HOME/bin:/usr/local/bin:$PATH\"\n\n# Function to ensure tbd is available\nensure_tbd() {\n # Check if tbd is already installed\n if command -v tbd &> /dev/null; then\n return 0\n fi\n\n echo \"[tbd] CLI not found, installing...\"\n\n # Try npm first (most common for Node.js tools)\n if command -v npm &> /dev/null; then\n echo \"[tbd] Installing via npm...\"\n npm install -g get-tbd 2>/dev/null \|\| {\n # If global install fails (permissions), try local install\n echo \"[tbd] Global npm install failed, trying user install...\"\n mkdir -p ~/.local/bin\n npm install --prefix ~/.local get-tbd\n # Create symlink if needed\n if [ -f ~/.local/node_modules/.bin/tbd ]; then\n ln -sf ~/.local/node_modules/.bin/tbd ~/.local/bin/tbd\n fi\n }\n elif command -v pnpm &> /dev/null; then\n echo \"[tbd] Installing via pnpm...\"\n pnpm add -g get-tbd\n elif command -v yarn &> /dev/null; then\n echo \"[tbd] Installing via yarn...\"\n yarn global add get-tbd\n else\n echo \"[tbd] ERROR: No package manager found (npm, pnpm, or yarn required)\"\n echo \"[tbd] Please install Node.js and npm, then run: npm install -g get-tbd\"\n return 1\n fi\n\n # Verify installation\n if command -v tbd &> /dev/null; then\n echo \"[tbd] Successfully installed to $(which tbd)\"\n return 0\n else\n echo \"[tbd] WARNING: tbd installed but not found in PATH\"\n echo \"[tbd] Checking common locations...\"\n # Try to find and add to path (include npm global bin)\n for dir in \"$NPM_GLOBAL_BIN\" ~/.local/bin ~/.local/node_modules/.bin /usr/local/bin; do\n if [ -n \"$dir\" ] && [ -x \"$dir/tbd\" ]; then\n export PATH=\"$dir:$PATH\"\n echo \"[tbd] Found at $dir/tbd\"\n return 0\n fi\n done\n echo \"[tbd] Could not locate tbd after installation\"\n return 1\n fi\n}\n\n# Main\nensure_tbd \|\| exit 1\n\n# Run tbd prime with any passed arguments (e.g., --brief for PreCompact)\ntbd prime \"$@\"\n`;\n\n/\n Claude Code session hooks configuration.\n * Always uses project-relative paths so hooks work in any environment\n * (local dev, Claude Code Cloud, etc.).\n /\nconst CLAUDE_SESSION_HOOKS = {\n hooks: {\n SessionStart: [\n {\n matcher: '',\n hooks: [{ type: 'command', command: 'bash .claude/scripts/tbd-session.sh' }],\n },\n ],\n PreCompact: [\n {\n matcher: '',\n hooks: [{ type: 'command', command: 'bash .claude/scripts/tbd-session.sh --brief' }],\n },\n ],\n },\n};\n\n/\n Claude Code project-local hooks configuration (installed to .claude/settings.json)\n * PostToolUse hook reminds about tbd sync after git push\n /\nconst CLAUDE_PROJECT_HOOKS = {\n hooks: {\n PostToolUse: [\n {\n matcher: 'Bash',\n hooks: [\n {\n type: 'command',\n command: '\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/tbd-closing-reminder.sh',\n },\n ],\n },\n ],\n },\n};\n\n/\n Script to remind about close protocol after git push\n /\nconst TBD_CLOSE_PROTOCOL_SCRIPT = `#!/bin/bash\n# Remind about close protocol after git push\n# Installed by: tbd setup claude\n\ninput=$(cat)\ncommand=$(echo \"$input\" \| jq -r '.tool_input.command // empty')\n\n# Check if this is a git push command and .tbd exists\nif [[ \"$command\" == git\\\\ push ]] \|\| [[ \"$command\" == \"&& git push\" ]] \|\| [[ \"$command\" == \"; git push\" ]]; then\n if [ -d \".tbd\" ]; then\n tbd closing\n fi\nfi\n\nexit 0\n`;\n\n/*\n SessionStart hook entry for the gh CLI ensure script.\n * Installed to project-local .claude/settings.json when use_gh_cli is true.\n /\nconst GH_CLI_HOOK_ENTRY = {\n matcher: '',\n hooks: [{ type: 'command', command: 'bash .claude/scripts/ensure-gh-cli.sh', timeout: 120 }],\n};\n\n/\n Command string used to identify the gh CLI hook entry in settings.json.\n /\nconst GH_CLI_HOOK_COMMAND_PATTERN = 'ensure-gh-cli';\n\n/\n Load a bundled script from dist/docs/install/ (or dev fallback).\n * Used to read real .sh files that are copied into the npm package at build time.\n /\nasync function loadBundledScript(name: string): Promise<string> {\n const __filename = fileURLToPath(import.meta.url);\n const __dirname = dirname(__filename);\n // Flat bundle: dist/docs/install/<name> (tsdown produces flat dist/)\n const flatBundlePath = join(__dirname, 'docs', 'install', name);\n // Nested bundle: dist/cli/commands/../../docs/install/<name>\n const nestedBundlePath = join(__dirname, '..', 'docs', 'install', name);\n // Dev fallback: packages/tbd/docs/install/<name>\n const devPath = join(__dirname, '..', '..', '..', 'docs', 'install', name);\n for (const p of [flatBundlePath, nestedBundlePath, devPath]) {\n try {\n return await readFile(p, 'utf-8');\n } catch {\n continue;\n }\n }\n throw new Error(`Bundled script not found: ${name}`);\n}\n\n/\n AGENTS.md integration markers for Codex/Factory.ai\n * Content is now generated dynamically from SKILL.md via getCodexTbdSection()\n /\nconst CODEX_BEGIN_MARKER = '<!-- BEGIN TBD INTEGRATION -->';\nconst CODEX_END_MARKER = '<!-- END TBD INTEGRATION -->';\n\n/\n Generate a new AGENTS.md file with tbd integration.\n \n @param quiet - If true, suppress auto-sync output (default: false)\n /\nasync function getCodexNewAgentsFile(quiet = false): Promise<string> {\n const tbdSection = await getCodexTbdSection(quiet);\n return `# Project Instructions for AI Agents\n\nThis file provides instructions and context for AI coding agents working on this project.\n\n${tbdSection}\n## Build & Test\n\n_Add your build and test commands here_\n\n\\`\\`\\`bash\n# Example:\n# npm install\n# npm test\n\\`\\`\\`\n\n## Architecture Overview\n\n_Add a brief overview of your project architecture_\n\n## Conventions & Patterns\n\n_Add your project-specific conventions here_\n`;\n}\n\n/\n Legacy script patterns to clean up from .claude/scripts/\n * These were used in older versions of tbd before hooks moved to `tbd prime`\n /\nconst LEGACY_TBD_SCRIPTS = ['setup-tbd.sh', 'ensure-tbd-cli.sh', 'ensure-tbd.sh', 'tbd-setup.sh'];\n\n/\n Patterns to identify legacy tbd hooks that should be removed.\n * These patterns match old-style commands that are no longer used.\n /\nconst LEGACY_TBD_HOOK_PATTERNS = [\n /\\.claude\\/scripts\\/.tbd/i, // Any tbd-related script in .claude/scripts/\n /tbd\\s+setup\\s+claude/i, // Old command: tbd setup claude\n /setup-tbd\\.sh/i, // Old script name\n /ensure-tbd/i, // Old script names\n];\n\nclass SetupClaudeHandler extends BaseCommand {\n private projectDir: string \| undefined;\n\n setProjectDir(dir: string): void {\n this.projectDir = dir;\n }\n\n async run(options: SetupClaudeOptions): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n const claudePaths = getClaudePaths(cwd);\n\n if (options.check) {\n await this.checkClaudeSetup(claudePaths.skill);\n return;\n }\n\n if (options.remove) {\n await this.removeClaudeSetup(claudePaths.skill);\n return;\n }\n\n await this.installClaudeSetup(claudePaths.skill);\n }\n\n private async checkClaudeSetup(skillPath: string): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n let sessionScriptInstalled = false;\n let sessionStartHook = false;\n let preCompactHook = false;\n let postToolUseHook = false;\n let hookScriptInstalled = false;\n let skillInstalled = false;\n\n // All hooks and scripts are project-local in .claude/\n const projectSettingsPath = join(cwd, '.claude', 'settings.json');\n const sessionScript = join(cwd, '.claude', 'scripts', 'tbd-session.sh');\n const hookScriptPath = join(cwd, '.claude', 'hooks', 'tbd-closing-reminder.sh');\n\n // Check for tbd-session.sh script\n try {\n await access(sessionScript);\n sessionScriptInstalled = true;\n } catch {\n // Script doesn't exist\n }\n\n // Check hooks in project settings\n try {\n await access(projectSettingsPath);\n const content = await readFile(projectSettingsPath, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n const hooks = settings.hooks as Record<string, unknown> \| undefined;\n\n if (hooks) {\n const sessionStart = hooks.SessionStart as { hooks?: { command?: string }[] }[];\n const preCompact = hooks.PreCompact as { hooks?: { command?: string }[] }[];\n const postToolUse = hooks.PostToolUse as { hooks?: { command?: string }[] }[];\n\n sessionStartHook =\n sessionStart?.some((h) =>\n h.hooks?.some(\n (hook) =>\n (hook.command?.includes('tbd prime') ?? false) \|\|\n (hook.command?.includes('tbd-session.sh') ?? false),\n ),\n ) ?? false;\n\n preCompactHook =\n preCompact?.some((h) =>\n h.hooks?.some(\n (hook) =>\n (hook.command?.includes('tbd prime') ?? false) \|\|\n (hook.command?.includes('tbd-session.sh') ?? false),\n ),\n ) ?? false;\n\n postToolUseHook =\n postToolUse?.some((h) =>\n h.hooks?.some((hook) => hook.command?.includes('tbd-closing-reminder')),\n ) ?? false;\n }\n } catch {\n // Project settings file doesn't exist\n }\n\n try {\n await access(hookScriptPath);\n hookScriptInstalled = true;\n } catch {\n // Hook script doesn't exist\n }\n\n const sessionHooksInstalled = sessionStartHook && preCompactHook && sessionScriptInstalled;\n const projectHooksInstalled = postToolUseHook && hookScriptInstalled;\n\n // Check skill file in project\n try {\n await access(skillPath);\n skillInstalled = true;\n } catch {\n // Skill file doesn't exist\n }\n\n const fullyInstalled = sessionHooksInstalled && projectHooksInstalled && skillInstalled;\n\n // Build diagnostic results for text output\n const diagnostics: DiagnosticResult[] = [];\n const settingsRelPath = '.claude/settings.json';\n\n // Session hooks diagnostic\n if (sessionHooksInstalled) {\n diagnostics.push({\n name: 'Session hooks',\n status: 'ok',\n message: 'SessionStart, PreCompact',\n path: settingsRelPath,\n });\n } else if (sessionStartHook \|\| preCompactHook) {\n diagnostics.push({\n name: 'Session hooks',\n status: 'warn',\n message: 'partially configured',\n path: settingsRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n } else {\n diagnostics.push({\n name: 'Session hooks',\n status: 'warn',\n message: 'not configured',\n path: settingsRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n }\n\n // Project hooks diagnostic\n if (projectHooksInstalled) {\n diagnostics.push({\n name: 'Project hooks',\n status: 'ok',\n message: 'PostToolUse sync reminder',\n path: settingsRelPath,\n });\n } else if (postToolUseHook \|\| hookScriptInstalled) {\n diagnostics.push({\n name: 'Project hooks',\n status: 'warn',\n message: 'partially configured',\n path: settingsRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n } else {\n diagnostics.push({\n name: 'Project hooks',\n status: 'warn',\n message: 'not configured',\n path: settingsRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n }\n\n // Skill file diagnostic\n const skillRelPath = '.claude/skills/tbd/SKILL.md';\n if (skillInstalled) {\n diagnostics.push({\n name: 'Skill file',\n status: 'ok',\n path: skillRelPath,\n });\n } else {\n diagnostics.push({\n name: 'Skill file',\n status: 'warn',\n message: 'not found',\n path: skillRelPath,\n suggestion: 'Run: tbd setup --auto',\n });\n }\n\n this.output.data(\n {\n installed: fullyInstalled,\n sessionHooks: {\n installed: sessionHooksInstalled,\n sessionStart: sessionStartHook,\n preCompact: preCompactHook,\n script: sessionScriptInstalled,\n path: projectSettingsPath,\n },\n projectHooks: {\n installed: projectHooksInstalled,\n postToolUse: postToolUseHook,\n hookScript: hookScriptInstalled,\n path: projectSettingsPath,\n },\n skill: { installed: skillInstalled, path: skillPath },\n },\n () => {\n const colors = this.output.getColors();\n renderDiagnostics(diagnostics, colors);\n },\n );\n }\n\n private async removeClaudeSetup(skillPath: string): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n const claudePaths = getClaudePaths(cwd);\n let removedHooks = false;\n let removedScripts = false;\n let removedSkill = false;\n\n // Remove hooks from project .claude/settings.json\n try {\n await access(claudePaths.settings);\n const content = await readFile(claudePaths.settings, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n\n if (settings.hooks) {\n const hooks = settings.hooks as Record<string, unknown>;\n\n // Remove all tbd hooks (SessionStart, PreCompact, PostToolUse)\n const filterTbdHooks = (arr: { hooks?: { command?: string }[] }[] \| undefined) => {\n if (!arr) return undefined;\n return arr.filter(\n (h) =>\n !h.hooks?.some(\n (hook) =>\n (hook.command?.includes('tbd-closing-reminder') ?? false) \|\|\n (hook.command?.includes('tbd-session.sh') ?? false) \|\|\n (hook.command?.includes('tbd prime') ?? false),\n ),\n );\n };\n\n for (const hookType of ['PostToolUse', 'SessionStart', 'PreCompact'] as const) {\n const filtered = filterTbdHooks(hooks[hookType] as { hooks?: { command?: string }[] }[]);\n if (filtered?.length === 0) delete hooks[hookType];\n else if (filtered) hooks[hookType] = filtered;\n }\n\n if (Object.keys(hooks).length === 0) {\n delete settings.hooks;\n }\n\n await writeFile(claudePaths.settings, JSON.stringify(settings, null, 2) + '\\n');\n removedHooks = true;\n }\n } catch {\n // Project settings file doesn't exist\n }\n\n // Remove hook script\n try {\n await rm(claudePaths.closingReminder);\n removedHooks = true;\n } catch {\n // Hook script doesn't exist\n }\n\n // Remove tbd scripts from project\n try {\n await rm(claudePaths.sessionScript);\n removedScripts = true;\n } catch {\n // Script doesn't exist\n }\n\n // Remove skill file from project\n try {\n await rm(skillPath);\n removedSkill = true;\n } catch {\n // Skill file doesn't exist\n }\n\n // Report what was removed\n if (removedHooks \|\| removedScripts) {\n this.output.success('Removed hooks and scripts');\n } else {\n this.output.info('No hooks to remove');\n }\n\n if (removedSkill) {\n this.output.success('Removed skill file');\n } else {\n this.output.info('No skill file to remove');\n }\n }\n\n private async installClaudeSetup(skillPath: string): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n const claudePaths = getClaudePaths(cwd);\n\n if (\n this.checkDryRun('Would install Claude Code hooks and skill file', {\n settingsPath: claudePaths.settings,\n skillPath,\n })\n ) {\n return;\n }\n\n try {\n // Always install to project .claude/ directory (create if needed).\n // This avoids confusion between global vs project-level settings and\n // ensures hooks work in any environment (local dev, Claude Code Cloud, etc.).\n await mkdir(claudePaths.dir, { recursive: true });\n\n // Read existing project settings\n let settings: Record<string, unknown> = {};\n try {\n await access(claudePaths.settings);\n const content = await readFile(claudePaths.settings, 'utf-8');\n settings = JSON.parse(content) as Record<string, unknown>;\n } catch {\n // File doesn't exist, start fresh\n }\n\n // Merge session hooks (SessionStart, PreCompact) - append without overwriting\n const existingHooks = (settings.hooks as Record<string, unknown[]>) \|\| {};\n const newHooks = CLAUDE_SESSION_HOOKS.hooks as Record<string, unknown[]>;\n const mergedHooks: Record<string, unknown[]> = { ...existingHooks };\n\n for (const [hookType, hookEntries] of Object.entries(newHooks)) {\n if (mergedHooks[hookType]) {\n // Filter out any existing tbd-session.sh hooks before adding new ones\n const filtered = (mergedHooks[hookType] as { hooks?: { command?: string }[] }[]).filter(\n (entry) => !entry.hooks?.some((h) => h.command?.includes('tbd-session.sh')),\n );\n mergedHooks[hookType] = [...filtered, ...hookEntries];\n } else {\n mergedHooks[hookType] = hookEntries;\n }\n }\n\n // Merge PostToolUse hooks\n const projectHooks = CLAUDE_PROJECT_HOOKS.hooks as Record<string, unknown[]>;\n for (const [hookType, hookEntries] of Object.entries(projectHooks)) {\n mergedHooks[hookType] ??= hookEntries;\n }\n\n settings.hooks = mergedHooks;\n\n // Manage gh CLI SessionStart hook based on use_gh_cli config setting\n const useGhCli = await this.getUseGhCliSetting();\n const finalHooks = settings.hooks as Record<string, unknown>;\n let sessionStartEntries = (finalHooks.SessionStart as Record<string, unknown>[]) \|\| [];\n\n if (useGhCli) {\n // Add gh CLI hook if not already present\n const hasGhCliHook = sessionStartEntries.some((h: Record<string, unknown>) =>\n (h.hooks as { command?: string }[])?.some((hook) =>\n hook.command?.includes(GH_CLI_HOOK_COMMAND_PATTERN),\n ),\n );\n if (!hasGhCliHook) {\n sessionStartEntries = [...sessionStartEntries, GH_CLI_HOOK_ENTRY];\n }\n\n // Install the script file\n await mkdir(claudePaths.scriptsDir, { recursive: true });\n const ghScriptContent = await loadBundledScript('ensure-gh-cli.sh');\n await writeFile(claudePaths.ghCliScript, ghScriptContent);\n await chmod(claudePaths.ghCliScript, 0o755);\n this.output.success('Installed gh CLI setup script');\n } else {\n // Remove gh CLI hook entries\n sessionStartEntries = sessionStartEntries.filter(\n (h: Record<string, unknown>) =>\n !(h.hooks as { command?: string }[])?.some((hook) =>\n hook.command?.includes(GH_CLI_HOOK_COMMAND_PATTERN),\n ),\n );\n\n // Remove the script file\n try {\n await rm(claudePaths.ghCliScript);\n this.output.success('Removed gh CLI setup script');\n } catch {\n // Script doesn't exist, ignore\n }\n }\n\n if (sessionStartEntries.length > 0) {\n finalHooks.SessionStart = sessionStartEntries;\n } else {\n delete finalHooks.SessionStart;\n }\n\n // Write all hooks to project settings in a single write\n await writeFile(claudePaths.settings, JSON.stringify(settings, null, 2) + '\\n');\n this.output.success('Installed hooks to .claude/settings.json');\n\n // Install tbd-session.sh script\n await mkdir(claudePaths.scriptsDir, { recursive: true });\n await writeFile(claudePaths.sessionScript, TBD_SESSION_SCRIPT);\n await chmod(claudePaths.sessionScript, 0o755);\n\n // Clean up legacy scripts in project\n const legacyScripts = ['ensure-tbd-cli.sh', 'setup-tbd.sh', 'ensure-tbd.sh'];\n for (const script of legacyScripts) {\n try {\n await rm(join(claudePaths.scriptsDir, script));\n } catch {\n // Script doesn't exist, ignore\n }\n }\n\n this.output.success('Installed tbd session script to .claude/scripts/');\n\n // Add .claude/.gitignore to ignore backup files\n // NOTE: Pattern re-addition is intentional - see comment in initializeTbd\n const claudeGitignorePath = join(claudePaths.dir, '.gitignore');\n const claudeGitignoreResult = await ensureGitignorePatterns(claudeGitignorePath, [\n '# Backup files',\n '.bak',\n ]);\n if (claudeGitignoreResult.created) {\n this.output.success('Created .claude/.gitignore');\n } else if (claudeGitignoreResult.added.length > 0) {\n this.output.success('Updated .claude/.gitignore');\n }\n // else: file is up-to-date, no message needed\n\n // Install hook script\n await mkdir(claudePaths.hooksDir, { recursive: true });\n await writeFile(claudePaths.closingReminder, TBD_CLOSE_PROTOCOL_SCRIPT);\n await chmod(claudePaths.closingReminder, 0o755);\n this.output.success('Installed sync reminder hook script');\n\n // Install skill file in project (with shortcut directory appended)\n await mkdir(dirname(skillPath), { recursive: true });\n let skillContent = await loadSkillContent();\n const directory = await getShortcutDirectory(this.ctx.quiet);\n if (directory) {\n skillContent = skillContent.trimEnd() + '\\n\\n' + directory;\n }\n // Insert DO NOT EDIT marker after frontmatter (formatted to match flowmark output)\n const markerComment =\n \"<!-- DO NOT EDIT: Generated by tbd setup.\\nRun 'tbd setup' to update.\\n-->\";\n skillContent = insertAfterFrontmatter(skillContent, markerComment);\n // Ensure file ends with newline\n skillContent = skillContent.trimEnd() + '\\n';\n await writeFile(skillPath, skillContent);\n this.output.success('Installed skill file');\n this.output.info(` ${skillPath}`);\n\n this.output.info('');\n this.output.info('What was installed:');\n this.output.info(' - Session hooks: SessionStart and PreCompact run `tbd prime`');\n this.output.info(' - Session script: .claude/scripts/tbd-session.sh');\n this.output.info(' - Project hooks: PostToolUse reminds about `tbd sync` after git push');\n this.output.info(' - Project skill: .claude/skills/tbd/SKILL.md');\n } catch (error) {\n throw new CLIError(`Failed to install: ${(error as Error).message}`);\n }\n }\n\n /\n Read the use_gh_cli setting from config. Defaults to true if not set or if\n * tbd is not yet initialized (so fresh setup installs gh CLI by default).\n /\n private async getUseGhCliSetting(): Promise<boolean> {\n try {\n const tbdRoot = await findTbdRoot(process.cwd());\n if (!tbdRoot) return true;\n const config = await readConfig(tbdRoot);\n return config.settings.use_gh_cli ?? true;\n } catch {\n return true;\n }\n }\n}\n\nclass SetupCodexHandler extends BaseCommand {\n private projectDir: string \| undefined;\n\n setProjectDir(dir: string): void {\n this.projectDir = dir;\n }\n\n async run(options: SetupCodexOptions): Promise<void> {\n const cwd = this.projectDir ?? process.cwd();\n const agentsPath = join(cwd, 'AGENTS.md');\n\n if (options.check) {\n await this.checkCodexSetup(agentsPath);\n return;\n }\n\n if (options.remove) {\n await this.removeCodexSection(agentsPath);\n return;\n }\n\n await this.installCodexSection(agentsPath);\n }\n\n private async checkCodexSetup(agentsPath: string): Promise<void> {\n const agentsRelPath = './AGENTS.md';\n try {\n await access(agentsPath);\n const content = await readFile(agentsPath, 'utf-8');\n\n if (content.includes(CODEX_BEGIN_MARKER)) {\n const diagnostic: DiagnosticResult = {\n name: 'AGENTS.md',\n status: 'ok',\n message: 'tbd section found',\n path: agentsRelPath,\n };\n this.output.data({ installed: true, path: agentsPath, hastbdSection: true }, () => {\n const colors = this.output.getColors();\n renderDiagnostics([diagnostic], colors);\n });\n } else {\n const diagnostic: DiagnosticResult = {\n name: 'AGENTS.md',\n status: 'warn',\n message: 'exists but no tbd section',\n path: agentsRelPath,\n suggestion: 'Run: tbd setup --auto',\n };\n this.output.data({ installed: false, path: agentsPath, hastbdSection: false }, () => {\n const colors = this.output.getColors();\n renderDiagnostics([diagnostic], colors);\n });\n }\n } catch {\n const diagnostic: DiagnosticResult = {\n name: 'AGENTS.md',\n status: 'warn',\n message: 'not found',\n path: agentsRelPath,\n suggestion: 'Run: tbd setup --auto',\n };\n this.output.data({ installed: false, expectedPath: agentsPath }, () => {\n const colors = this.output.getColors();\n renderDiagnostics([diagnostic], colors);\n });\n }\n }\n\n private async removeCodexSection(agentsPath: string): Promise<void> {\n try {\n await access(agentsPath);\n const content = await readFile(agentsPath, 'utf-8');\n\n if (!content.includes(CODEX_BEGIN_MARKER)) {\n this.output.info('No tbd section found in AGENTS.md');\n return;\n }\n\n const newContent = this.removetbdSection(content);\n const trimmed = newContent.trim();\n\n if (trimmed === '' \|\| trimmed === '# Project Instructions for AI Agents') {\n // File is empty or only has the default header, remove it\n await rm(agentsPath);\n this.output.success('Removed AGENTS.md (file was empty after removing tbd section)');\n } else {\n await writeFile(agentsPath, newContent);\n this.output.success('Removed tbd section from AGENTS.md');\n }\n } catch {\n this.output.info('AGENTS.md not found');\n }\n }\n\n private async installCodexSection(agentsPath: string): Promise<void> {\n if (this.checkDryRun('Would create/update AGENTS.md', { path: agentsPath })) {\n return;\n }\n\n try {\n let existingContent = '';\n try {\n await access(agentsPath);\n existingContent = await readFile(agentsPath, 'utf-8');\n } catch {\n // File doesn't exist\n }\n\n let newContent: string;\n\n const tbdSection = await getCodexTbdSection(this.ctx.quiet);\n\n if (existingContent) {\n if (existingContent.includes(CODEX_BEGIN_MARKER)) {\n // Update existing section\n newContent = this.updatetbdSection(existingContent, tbdSection);\n await writeFile(agentsPath, newContent);\n this.output.success('Updated existing tbd section in AGENTS.md');\n } else {\n // Append section to existing file\n newContent = existingContent + '\\n\\n' + tbdSection;\n await writeFile(agentsPath, newContent);\n this.output.success('Added tbd section to existing AGENTS.md');\n }\n } else {\n // Create new file\n const newAgentsFile = await getCodexNewAgentsFile(this.ctx.quiet);\n await writeFile(agentsPath, newAgentsFile);\n this.output.success('Created new AGENTS.md with tbd integration');\n }\n\n this.output.info(` File: ${agentsPath}`);\n this.output.info('');\n this.output.info('Codex and other AGENTS.md-compatible tools will automatically');\n this.output.info('read this file on session start.');\n } catch (error) {\n throw new CLIError(`Failed to update AGENTS.md: ${(error as Error).message}`);\n }\n }\n\n private updatetbdSection(content: string, tbdSection: string): string {\n const startIdx = content.indexOf(CODEX_BEGIN_MARKER);\n const endIdx = content.indexOf(CODEX_END_MARKER);\n\n if (startIdx === -1 \|\| endIdx === -1 \|\| startIdx > endIdx) {\n // Markers not found or invalid, append instead\n return content + '\\n\\n' + tbdSection;\n }\n\n // Find the end of the end marker line\n let endOfEndMarker = endIdx + CODEX_END_MARKER.length;\n const nextNewline = content.indexOf('\\n', endOfEndMarker);\n if (nextNewline !== -1) {\n endOfEndMarker = nextNewline + 1;\n }\n\n return content.slice(0, startIdx) + tbdSection + content.slice(endOfEndMarker);\n }\n\n private removetbdSection(content: string): string {\n const startIdx = content.indexOf(CODEX_BEGIN_MARKER);\n const endIdx = content.indexOf(CODEX_END_MARKER);\n\n if (startIdx === -1 \|\| endIdx === -1 \|\| startIdx > endIdx) {\n return content;\n }\n\n // Find the end of the end marker line\n let endOfEndMarker = endIdx + CODEX_END_MARKER.length;\n const nextNewline = content.indexOf('\\n', endOfEndMarker);\n if (nextNewline !== -1) {\n endOfEndMarker = nextNewline + 1;\n }\n\n // Also remove leading blank lines before the section\n let trimStart = startIdx;\n while (trimStart > 0 && (content[trimStart - 1] === '\\n' \|\| content[trimStart - 1] === '\\r')) {\n trimStart--;\n }\n\n return content.slice(0, trimStart) + content.slice(endOfEndMarker);\n }\n}\n\n// ============================================================================\n// Setup Default Handler (for --auto and --interactive modes)\n// ============================================================================\n\ninterface SetupDefaultOptions {\n auto?: boolean;\n interactive?: boolean;\n fromBeads?: boolean;\n prefix?: string;\n force?: boolean;\n ghCli?: boolean; // Commander sets to false when --no-gh-cli is passed\n}\n\n/\n Default handler for `tbd setup` with --auto or --interactive flags.\n \n This implements the unified onboarding flow:\n * - `tbd setup --auto`: Non-interactive setup with smart defaults (for agents)\n * - `tbd setup --interactive`: Interactive setup with prompts (for humans)\n \n Decision tree:\n * 1. Not in git repo → Error (git init first)\n * 2. Resolve to git root → All paths relative to .git/ parent\n * 3. Has .tbd/ → Already initialized, check/update integrations\n * 4. Has .beads/ → Beads migration flow\n * 5. Fresh repo → Initialize + configure integrations\n /\nclass SetupDefaultHandler extends BaseCommand {\n private cmd: Command;\n\n constructor(command: Command) {\n super(command);\n this.cmd = command;\n }\n\n async run(options: SetupDefaultOptions): Promise<void> {\n const colors = this.output.getColors();\n const cwd = process.cwd();\n\n // Determine mode\n const isAutoMode = options.auto === true;\n // Note: options.interactive will be used when we add interactive prompts\n\n // Header\n console.log(colors.bold('tbd: Git-native issue tracking for AI agents and humans'));\n console.log('');\n\n // Check if in git repo and resolve to git root\n const inGitRepo = await isInGitRepo(cwd);\n if (!inGitRepo) {\n throw new CLIError('Not a git repository. Run `git init` first.');\n }\n\n // Resolve to git root so .tbd/ and .claude/ are always adjacent to .git/\n const gitRoot = await findGitRoot(cwd);\n if (!gitRoot) {\n throw new CLIError('Could not determine git repository root.');\n }\n\n // Use git root as the working directory for all setup operations\n const projectDir = gitRoot;\n\n // Check current state\n const hasTbd = await isInitialized(projectDir);\n const hasBeads = await pathExists(join(projectDir, '.beads'));\n\n // Validate --from-beads flag requires .beads/ directory\n if (options.fromBeads && !hasBeads) {\n throw new CLIError(\n 'The --from-beads flag requires a .beads/ directory to migrate from.\\n' +\n 'For fresh setup, use: tbd setup --auto --prefix=<name>',\n );\n }\n\n console.log('Checking repository...');\n console.log(` ${colors.success('✓')} Git repository detected`);\n\n if (hasTbd) {\n // Already initialized flow - check for migrations\n const { config, migrated, changes } = await readConfigWithMigration(projectDir);\n console.log(` ${colors.success('✓')} tbd initialized (prefix: ${config.display.id_prefix})`);\n\n // Apply --no-gh-cli flag to config if specified\n let needsConfigWrite = migrated;\n if (options.ghCli === false && config.settings.use_gh_cli !== false) {\n config.settings.use_gh_cli = false;\n needsConfigWrite = true;\n }\n\n // Persist config if migrated or --no-gh-cli was applied\n if (needsConfigWrite) {\n await writeConfig(projectDir, config);\n if (migrated) {\n console.log(` ${colors.success('✓')} Config migrated to latest format`);\n for (const change of changes) {\n console.log(` ${colors.dim(change)}`);\n }\n }\n if (options.ghCli === false) {\n console.log(` ${colors.success('✓')} Disabled gh CLI auto-setup`);\n }\n }\n\n console.log('');\n await this.handleAlreadyInitialized(projectDir, isAutoMode);\n } else if ((hasBeads \|\| options.fromBeads) && !options.prefix) {\n // Beads migration flow (unless prefix override given)\n console.log(` ${colors.dim('✗')} tbd not initialized`);\n console.log(` ${colors.warn('!')} Beads detected (.beads/ directory found)`);\n console.log('');\n await this.handleBeadsMigration(projectDir, isAutoMode, options);\n } else {\n // Fresh setup flow\n console.log(` ${colors.dim('✗')} tbd not initialized`);\n console.log('');\n await this.handleFreshSetup(projectDir, isAutoMode, options);\n }\n }\n\n private async handleAlreadyInitialized(projectDir: string, _isAutoMode: boolean): Promise<void> {\n const colors = this.output.getColors();\n\n // Ensure .tbd/.gitignore is up-to-date (may have new patterns from newer versions)\n const tbdGitignoreResult = await ensureGitignorePatterns(\n join(projectDir, TBD_DIR, '.gitignore'),\n [\n '# Synced documentation cache (regenerated by tbd sync --docs)',\n 'docs/',\n '',\n '# Hidden worktree for tbd-sync branch',\n `${WORKTREE_DIR_NAME}/`,\n '',\n '# Data sync directory (only exists in worktree)',\n `${DATA_SYNC_DIR_NAME}/`,\n '',\n '# Local state',\n 'state.yml',\n '',\n '# Migration backups (local only, not synced)',\n 'backups/',\n '',\n '# Temporary files',\n '.tmp',\n '.temp',\n ],\n );\n if (tbdGitignoreResult.created) {\n console.log(` ${colors.success('✓')} Created .tbd/.gitignore`);\n } else if (tbdGitignoreResult.added.length > 0) {\n console.log(` ${colors.success('✓')} Updated .tbd/.gitignore with new patterns`);\n }\n\n console.log('Checking integrations...');\n\n // Use SetupAutoHandler to configure integrations\n const autoHandler = new SetupAutoHandler(this.cmd);\n await autoHandler.run(projectDir);\n\n console.log('');\n console.log(colors.success('All set!'));\n }\n\n private async handleBeadsMigration(\n cwd: string,\n isAutoMode: boolean,\n options: SetupDefaultOptions,\n ): Promise<void> {\n const colors = this.output.getColors();\n\n if (isAutoMode) {\n console.log(` ${colors.warn('!')} Beads detected - auto-migrating`);\n console.log('');\n }\n\n // Get prefix from beads config or use provided --prefix\n const beadsPrefix = await getBeadsPrefix(cwd);\n const prefix = options.prefix ?? beadsPrefix;\n\n if (!prefix) {\n throw new CLIError(\n 'Could not read prefix from beads config.\\n' +\n 'Please specify a prefix (2-8 letters recommended):\\n' +\n ' tbd setup --auto --prefix=tbd',\n );\n }\n\n // Hard validation: always enforced\n if (!isValidPrefix(prefix)) {\n throw new CLIError(\n 'Invalid prefix format.\\n' +\n 'Prefix must be 1-20 lowercase characters:\\n' +\n ' - Must start with a letter (a-z)\\n' +\n ' - Must end with alphanumeric (a-z, 0-9)\\n' +\n ' - Middle characters can include dots (.) and underscores (_)\\n' +\n ' - No dashes allowed (breaks ID syntax)\\n\\n' +\n 'Please specify a valid prefix:\\n' +\n ' tbd setup --from-beads --prefix=tbd',\n );\n }\n\n // Soft validation: only for user-provided prefixes (not from beads config)\n // If prefix came from beads config, we accept it to ease migration\n const prefixFromBeads = beadsPrefix && prefix === beadsPrefix;\n if (!prefixFromBeads && !isRecommendedPrefix(prefix) && !options.force) {\n throw new CLIError(\n `Prefix \"${prefix}\" is not recommended.\\n` +\n 'Recommended prefixes are 2-8 alphabetic characters (e.g., \"tbd\", \"myp\", \"proj\").\\n\\n' +\n 'If you really want to use this prefix, add --force to override.\\n\\n' +\n 'Example:\\n' +\n ` tbd setup --from-beads --prefix=${prefix} --force`,\n );\n }\n\n // Initialize tbd first\n await this.initializeTbd(cwd, prefix);\n\n // Apply --no-gh-cli flag to newly created config\n if (options.ghCli === false) {\n const config = await readConfig(cwd);\n config.settings.use_gh_cli = false;\n await writeConfig(cwd, config);\n console.log(` ${colors.success('✓')} Disabled gh CLI auto-setup`);\n }\n\n // Import beads issues from the JSONL file\n console.log('Importing from Beads...');\n const beadsDir = join(cwd, '.beads');\n const jsonlPath = join(beadsDir, 'issues.jsonl');\n\n try {\n await access(jsonlPath);\n // Import directly from the JSONL file (tbd is already initialized)\n const result = spawnSync('tbd', ['import', jsonlPath, '--verbose'], {\n cwd,\n stdio: 'inherit',\n });\n if (result.status !== 0) {\n console.log(colors.warn('Warning: Some issues may not have imported correctly'));\n }\n } catch {\n console.log(colors.dim(' No issues.jsonl found - skipping import'));\n }\n\n // Disable beads\n await this.disableBeads(cwd);\n\n console.log('');\n console.log('Configuring integrations...');\n\n // Configure integrations\n const autoHandler = new SetupAutoHandler(this.cmd);\n await autoHandler.run(cwd);\n\n console.log('');\n console.log(colors.success('Setup complete!'));\n\n this.showWhatsNext(colors);\n\n // Show dashboard after setup\n spawnSync('tbd', ['prime'], { stdio: 'inherit' });\n\n // Mark welcome as seen since the user got the full onboarding experience\n try {\n await markWelcomeSeen(cwd);\n } catch {\n // Non-critical: don't fail setup if state write fails\n }\n }\n\n private async handleFreshSetup(\n cwd: string,\n isAutoMode: boolean,\n options: SetupDefaultOptions,\n ): Promise<void> {\n const colors = this.output.getColors();\n\n // Require --prefix for fresh setup (no auto-detection)\n const prefix = options.prefix;\n\n if (!prefix) {\n throw new CLIError(\n '--prefix is required for tbd setup --auto\\n\\n' +\n 'The --prefix flag specifies your project name for issue IDs.\\n' +\n 'Use a short 2-4 letter prefix so issue IDs stand out clearly.\\n\\n' +\n 'Example:\\n' +\n ' tbd setup --auto --prefix=tbd # Issues: tbd-a1b2\\n' +\n ' tbd setup --auto --prefix=myp # Issues: myp-c3d4\\n\\n' +\n 'Note: If migrating from beads, the prefix is automatically read from your beads config.',\n );\n }\n\n // Hard validation: always enforced\n if (!isValidPrefix(prefix)) {\n throw new CLIError(\n 'Invalid prefix format.\\n' +\n 'Prefix must be 1-20 lowercase characters:\\n' +\n ' - Must start with a letter (a-z)\\n' +\n ' - Must end with alphanumeric (a-z, 0-9)\\n' +\n ' - Middle characters can include dots (.) and underscores (_)\\n' +\n ' - No dashes allowed (breaks ID syntax)\\n\\n' +\n 'Example:\\n' +\n ' tbd setup --auto --prefix=tbd',\n );\n }\n\n // Soft validation: recommended format (2-8 alphabetic)\n if (!isRecommendedPrefix(prefix) && !options.force) {\n throw new CLIError(\n `Prefix \"${prefix}\" is not recommended.\\n` +\n 'Recommended prefixes are 2-8 alphabetic characters (e.g., \"tbd\", \"myp\", \"proj\").\\n\\n' +\n 'If you really want to use this prefix, add --force to override.\\n\\n' +\n 'Example:\\n' +\n ` tbd setup --auto --prefix=${prefix} --force`,\n );\n }\n\n console.log(`Initializing with prefix \"${prefix}\"...`);\n\n await this.initializeTbd(cwd, prefix);\n\n // Apply --no-gh-cli flag to newly created config\n if (options.ghCli === false) {\n const config = await readConfig(cwd);\n config.settings.use_gh_cli = false;\n await writeConfig(cwd, config);\n console.log(` ${colors.success('✓')} Disabled gh CLI auto-setup`);\n }\n\n console.log('');\n console.log('Configuring integrations...');\n\n // Configure integrations\n const autoHandler = new SetupAutoHandler(this.cmd);\n await autoHandler.run(cwd);\n\n console.log('');\n console.log(colors.success('Setup complete!'));\n\n this.showWhatsNext(colors);\n\n // Show dashboard after setup\n spawnSync('tbd', ['prime'], { stdio: 'inherit' });\n\n // Mark welcome as seen since the user got the full onboarding experience\n try {\n await markWelcomeSeen(cwd);\n } catch {\n // Non-critical: don't fail setup if state write fails\n }\n }\n\n /\n Show \"What's Next\" guidance after setup completion.\n * Framed as what users can SAY to get help, not as CLI commands to run.\n /\n private showWhatsNext(colors: ReturnType<typeof this.output.getColors>): void {\n console.log('');\n console.log(colors.bold(\"WHAT'S NEXT\"));\n console.log('');\n console.log(' Try saying things like:');\n console.log(' \"There\\'s a bug where ...\" → Creates and tracks a bug');\n console.log(' \"Let\\'s plan a new feature\" → Walks through a planning spec');\n console.log(' \"Let\\'s work on current issues\" → Shows ready issues to tackle');\n console.log(' \"Commit this code\" → Reviews and commits properly');\n console.log(' \"Review for best practices\" → Code review with guidelines');\n console.log('');\n }\n\n private async initializeTbd(cwd: string, prefix: string): Promise<void> {\n const colors = this.output.getColors();\n\n // 1. Create .tbd/ directory with config.yml\n await initConfig(cwd, VERSION, prefix);\n console.log(` ${colors.success('✓')} Created .tbd/config.yml`);\n\n // 2. Create/update .tbd/.gitignore (idempotent)\n // NOTE: Pattern re-addition is intentional - these are tool-managed files\n // that are regenerated from the npm package on every setup. If a user removes\n // a pattern, we re-add it because tracking these directories in git would\n // cause noise on every tbd upgrade.\n const tbdGitignoreResult = await ensureGitignorePatterns(join(cwd, TBD_DIR, '.gitignore'), [\n '# Synced documentation cache (regenerated by tbd sync --docs)',\n 'docs/',\n '',\n '# Hidden worktree for tbd-sync branch',\n `${WORKTREE_DIR_NAME}/`,\n '',\n '# Data sync directory (only exists in worktree)',\n `${DATA_SYNC_DIR_NAME}/`,\n '',\n '# Local state',\n 'state.yml',\n '',\n '# Migration backups (local only, not synced)',\n 'backups/',\n '',\n '# Temporary files',\n '.tmp',\n '.temp',\n ]);\n if (tbdGitignoreResult.created) {\n console.log(` ${colors.success('✓')} Created .tbd/.gitignore`);\n } else if (tbdGitignoreResult.added.length > 0) {\n console.log(` ${colors.success('✓')} Updated .tbd/.gitignore`);\n }\n // else: file is up-to-date, no message needed\n\n // 3. Initialize worktree for sync branch\n try {\n await initWorktree(cwd);\n\n // Verify worktree health after creation (prevents silent failures)\n const health = await checkWorktreeHealth(cwd);\n if (health.valid) {\n console.log(` ${colors.success('✓')} Initialized sync branch`);\n } else {\n console.log(\n ` ${colors.warn('!')} Sync branch created but verification failed (status: ${health.status})`,\n );\n console.log(` Run 'tbd doctor' to diagnose`);\n }\n } catch {\n // Non-fatal - sync will work, just not optimally\n console.log(` ${colors.dim('○')} Sync branch will be created on first sync`);\n }\n }\n\n private async disableBeads(cwd: string): Promise<void> {\n const colors = this.output.getColors();\n\n // Move .beads to .beads-disabled\n const beadsDir = join(cwd, '.beads');\n const disabledDir = join(cwd, '.beads-disabled');\n\n try {\n await rename(beadsDir, disabledDir);\n console.log(` ${colors.success('✓')} Disabled beads (moved to .beads-disabled/)`);\n } catch {\n console.log(` ${colors.dim('○')} Could not move .beads directory`);\n }\n }\n}\n\n// ============================================================================\n// Auto Setup Command\n// ============================================================================\n\ninterface AutoSetupResult {\n name: string;\n detected: boolean;\n installed: boolean;\n alreadyInstalled: boolean;\n error?: string;\n}\n\nclass SetupAutoHandler extends BaseCommand {\n private cmd: Command;\n\n constructor(command: Command) {\n super(command);\n this.cmd = command;\n }\n\n /\n Clean up legacy scripts from project .claude/scripts/ directory.\n * This runs during any setup, regardless of whether Claude Code is detected,\n * since we want to clean up old project-level scripts that are no longer needed.\n /\n private async cleanupLegacyProjectScripts(cwd: string): Promise<string[]> {\n const scriptsDir = join(cwd, '.claude', 'scripts');\n const scriptsRemoved: string[] = [];\n\n try {\n await access(scriptsDir);\n const entries = await readdir(scriptsDir, { withFileTypes: true });\n\n for (const entry of entries) {\n if (entry.isFile()) {\n const filename = entry.name;\n // Check against known legacy script names\n if (LEGACY_TBD_SCRIPTS.includes(filename)) {\n try {\n await rm(join(scriptsDir, filename));\n scriptsRemoved.push(filename);\n } catch {\n // Ignore removal errors\n }\n }\n }\n }\n } catch {\n // Scripts directory doesn't exist, nothing to clean\n }\n\n return scriptsRemoved;\n }\n\n /\n Filter out hook entries that match legacy tbd patterns from project settings.\n /\n private filterLegacyHooks(\n hookList: { hooks?: { command?: string }[] }[],\n ): { hooks?: { command?: string }[] }[] {\n return hookList.filter((entry) => {\n // Check if any hook command matches legacy patterns\n const hasLegacyCommand = entry.hooks?.some((hook) => {\n if (!hook.command) return false;\n return LEGACY_TBD_HOOK_PATTERNS.some((pattern) => pattern.test(hook.command!));\n });\n // Keep entries that DON'T have legacy commands\n return !hasLegacyCommand;\n });\n }\n\n /\n Clean up legacy hooks from project .claude/settings.json.\n * This runs during any setup, regardless of whether Claude Code is detected.\n /\n private async cleanupLegacyProjectHooks(cwd: string): Promise<number> {\n const projectSettingsPath = join(cwd, '.claude', 'settings.json');\n let hooksRemoved = 0;\n\n try {\n await access(projectSettingsPath);\n const content = await readFile(projectSettingsPath, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n\n if (settings.hooks) {\n const hooks = settings.hooks as Record<string, unknown>;\n let modified = false;\n\n for (const hookType of ['SessionStart', 'PreCompact', 'PostToolUse']) {\n if (hooks[hookType]) {\n const hookList = hooks[hookType] as { hooks?: { command?: string }[] }[];\n const filtered = this.filterLegacyHooks(hookList);\n if (filtered.length !== hookList.length) {\n hooksRemoved += hookList.length - filtered.length;\n hooks[hookType] = filtered.length > 0 ? filtered : undefined;\n if (!hooks[hookType]) delete hooks[hookType];\n modified = true;\n }\n }\n }\n\n if (modified) {\n if (Object.keys(hooks).length === 0) {\n delete settings.hooks;\n }\n await writeFile(projectSettingsPath, JSON.stringify(settings, null, 2) + '\\n');\n }\n }\n } catch {\n // Project settings file doesn't exist, nothing to clean\n }\n\n return hooksRemoved;\n }\n\n async run(projectDir?: string): Promise<void> {\n const colors = this.output.getColors();\n const cwd = projectDir ?? process.cwd();\n const results: AutoSetupResult[] = [];\n\n // Clean up legacy project-level scripts and hooks FIRST,\n // regardless of whether any coding agent is detected.\n // This ensures old tbd scripts are removed even if user switches tools.\n const scriptsRemoved = await this.cleanupLegacyProjectScripts(cwd);\n const hooksRemoved = await this.cleanupLegacyProjectHooks(cwd);\n if (scriptsRemoved.length > 0 \|\| hooksRemoved > 0) {\n const parts = [];\n if (scriptsRemoved.length > 0) parts.push(`${scriptsRemoved.length} script(s)`);\n if (hooksRemoved > 0) parts.push(`${hooksRemoved} hook(s)`);\n console.log(colors.dim(`Cleaned up legacy ${parts.join(' and ')}`));\n }\n\n // Sync docs using DocSync\n await this.syncDocs(cwd);\n\n // Detect and set up Claude Code\n const claudeResult = await this.setupClaudeIfDetected(cwd);\n results.push(claudeResult);\n\n // Detect and set up Codex/AGENTS.md (also used by Cursor since v1.6)\n const codexResult = await this.setupCodexIfDetected(cwd);\n results.push(codexResult);\n\n // Report results\n const installed = results.filter((r) => r.installed && !r.alreadyInstalled);\n const alreadyInstalled = results.filter((r) => r.alreadyInstalled);\n const skipped = results.filter((r) => !r.detected);\n\n if (installed.length > 0) {\n console.log(colors.bold('Configured integrations:'));\n for (const r of installed) {\n console.log(` ${colors.success('✓')} ${r.name}`);\n }\n }\n\n if (alreadyInstalled.length > 0) {\n console.log(colors.dim('Already configured:'));\n for (const r of alreadyInstalled) {\n console.log(` ${colors.dim('✓')} ${r.name}`);\n }\n }\n\n if (skipped.length > 0 && (installed.length > 0 \|\| alreadyInstalled.length > 0)) {\n console.log(colors.dim('Not detected (skipped):'));\n for (const r of skipped) {\n console.log(` ${colors.dim('-')} ${r.name}`);\n }\n }\n\n if (installed.length === 0 && alreadyInstalled.length === 0) {\n console.log(colors.dim('No coding agents detected.'));\n console.log('');\n console.log(\n 'Install a coding agent (Claude Code, Codex, or any AGENTS.md-compatible tool) and re-run:',\n );\n console.log(' tbd setup --auto');\n }\n }\n\n /\n Sync docs using syncDocsWithDefaults.\n * Uses the shared function that merges bundled defaults, prunes stale entries,\n * syncs files, and updates config.\n /\n private async syncDocs(cwd: string): Promise<void> {\n const colors = this.output.getColors();\n\n // Ensure docs directories exist\n await mkdir(join(cwd, TBD_SHORTCUTS_SYSTEM), { recursive: true });\n await mkdir(join(cwd, TBD_SHORTCUTS_STANDARD), { recursive: true });\n await mkdir(join(cwd, TBD_GUIDELINES_DIR), { recursive: true });\n await mkdir(join(cwd, TBD_TEMPLATES_DIR), { recursive: true });\n\n // Use shared sync function that handles:\n // - Merging bundled defaults with user config\n // - Pruning stale internal entries\n // - Syncing files to .tbd/docs/\n // - Writing config if changed\n // - Updating last_doc_sync_at in state\n const result = await syncDocsWithDefaults(cwd);\n\n // Report sync results\n if (result.configChanged) {\n console.log(colors.dim('Updated docs_cache config'));\n }\n\n const total = result.added.length + result.updated.length;\n if (total > 0) {\n console.log(colors.dim(`Synced ${total} doc(s) to ${TBD_DOCS_DIR}/`));\n }\n if (result.removed.length > 0) {\n console.log(colors.dim(`Removed ${result.removed.length} outdated doc(s)`));\n }\n if (result.pruned.length > 0) {\n console.log(colors.dim(`Pruned ${result.pruned.length} stale config entry/entries`));\n }\n if (result.errors.length > 0) {\n for (const { path, error } of result.errors) {\n console.log(colors.warn(`Warning: ${path}: ${error}`));\n }\n }\n }\n\n private async setupClaudeIfDetected(cwd: string): Promise<AutoSetupResult> {\n const result: AutoSetupResult = {\n name: 'Claude Code',\n detected: false,\n installed: false,\n alreadyInstalled: false,\n };\n\n // Detect Claude Code: check for ~/.claude/ directory or CLAUDE_ env vars\n // Note: We check global dir for DETECTION only, not for installation\n const hasClaudeDir = await pathExists(GLOBAL_CLAUDE_DIR);\n const hasClaudeEnv = Object.keys(process.env).some((k) => k.startsWith('CLAUDE_'));\n\n if (!hasClaudeDir && !hasClaudeEnv) {\n return result;\n }\n\n result.detected = true;\n\n // Check if already installed (project-local settings - all installs are project-local)\n const claudePaths = getClaudePaths(cwd);\n\n try {\n if (await pathExists(claudePaths.settings)) {\n const content = await readFile(claudePaths.settings, 'utf-8');\n const settings = JSON.parse(content) as Record<string, unknown>;\n const hooks = settings.hooks as Record<string, unknown> \| undefined;\n if (hooks) {\n const sessionStart = hooks.SessionStart as { hooks?: { command?: string }[] }[];\n const hasTbdHook = sessionStart?.some((h) =>\n h.hooks?.some(\n (hook) =>\n (hook.command?.includes('tbd prime') ?? false) \|\|\n (hook.command?.includes('tbd-session.sh') ?? false),\n ),\n );\n if (hasTbdHook && (await pathExists(claudePaths.skill))) {\n result.alreadyInstalled = true;\n // Note: We still run the handler to update the skill file content\n // even if hooks are already installed. This ensures users get the\n // latest skill file when running `tbd setup --auto`.\n }\n }\n }\n\n // Install/update Claude Code setup (always runs to update skill file)\n const handler = new SetupClaudeHandler(this.cmd);\n handler.setProjectDir(cwd);\n await handler.run({});\n result.installed = true;\n } catch (error) {\n result.error = (error as Error).message;\n }\n\n return result;\n }\n\n private async setupCodexIfDetected(cwd: string): Promise<AutoSetupResult> {\n const result: AutoSetupResult = {\n name: 'Codex/AGENTS.md',\n detected: false,\n installed: false,\n alreadyInstalled: false,\n };\n\n // Detect Codex: check for existing AGENTS.md or CODEX_* env vars\n const agentsPath = getAgentsMdPath(cwd);\n const hasAgentsMd = await pathExists(agentsPath);\n const hasCodexEnv = Object.keys(process.env).some((k) => k.startsWith('CODEX_'));\n\n if (!hasAgentsMd && !hasCodexEnv) {\n return result;\n }\n\n result.detected = true;\n\n // Check if already has tbd section\n if (hasAgentsMd) {\n const content = await readFile(agentsPath, 'utf-8');\n if (content.includes('BEGIN TBD INTEGRATION')) {\n result.alreadyInstalled = true;\n // Note: We still run the handler to update the AGENTS.md content\n // even if tbd section exists. This ensures users get the latest\n // content when running `tbd setup --auto`.\n }\n }\n\n try {\n // Install/update Codex AGENTS.md (always runs to update content)\n const handler = new SetupCodexHandler(this.cmd);\n handler.setProjectDir(cwd);\n await handler.run({});\n result.installed = true;\n } catch (error) {\n result.error = (error as Error).message;\n }\n\n return result;\n }\n}\n\n// Main setup command\nexport const setupCommand = new Command('setup')\n .description('Configure tbd integration with editors and tools')\n .option('--auto', 'Non-interactive mode with smart defaults (for agents/scripts)')\n .option('--interactive', 'Interactive mode with prompts (for humans)')\n .option('--from-beads', 'Migrate from Beads to tbd')\n .option('--prefix <name>', 'Project prefix for issue IDs (required for fresh setup)')\n .option('--force', 'Allow non-recommended prefix format (not 2-8 alphabetic)')\n .option('--no-gh-cli', 'Disable automatic GitHub CLI installation hook')\n .action(async (options: SetupDefaultOptions, command) => {\n // If --auto or --interactive flag is set, run the default handler\n if (options.auto \|\| options.interactive) {\n const handler = new SetupDefaultHandler(command);\n await handler.run(options);\n return;\n }\n\n // If --from-beads is set without --auto/--interactive, treat as --auto\n if (options.fromBeads) {\n const handler = new SetupDefaultHandler(command);\n await handler.run({ ...options, auto: true });\n return;\n }\n\n // No flags provided - show help\n console.log('Usage: tbd setup [options]');\n console.log('');\n console.log('Initialize tbd and configure agent integrations.');\n console.log('Must be run inside a git repository. Installs .tbd/ and .claude/');\n console.log('at the git root (adjacent to .git/).');\n console.log('');\n console.log('Modes (one required):');\n console.log(\n ' --auto Non-interactive mode with smart defaults (for agents/scripts)',\n );\n console.log(' --interactive Interactive mode with prompts (for humans)');\n console.log(' --from-beads Migrate from Beads to tbd (implies --auto)');\n console.log('');\n console.log('Options:');\n console.log(' --prefix <name> Project prefix for issue IDs (2-8 alphabetic recommended)');\n console.log(' --force Allow non-recommended prefix format');\n console.log(' --no-gh-cli Disable automatic GitHub CLI installation hook');\n console.log('');\n console.log('Examples:');\n console.log(' tbd setup --auto --prefix=tbd # Full automatic setup with prefix');\n console.log(' tbd setup --from-beads # Migrate from Beads (uses beads prefix)');\n console.log(' tbd setup --interactive # Interactive setup with prompts');\n console.log('');\n console.log('For surgical initialization without integrations, see: tbd init --help');\n });\n","/*\n `tbd save` - Save issues to a workspace or directory.\n \n Saves issues from the data-sync worktree to a named workspace or directory.\n * Used for sync failure recovery, backups, and bulk editing workflows.\n \n See: plan-2026-01-30-workspace-sync-alt.md\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, ValidationError } from '../lib/errors.js';\nimport { resolveDataSyncDir } from '../../lib/paths.js';\nimport { saveToWorkspace, type SaveOptions } from '../../file/workspace.js';\n\ninterface SaveCommandOptions {\n workspace?: string;\n dir?: string;\n outbox?: boolean;\n updatesOnly?: boolean;\n}\n\nclass SaveHandler extends BaseCommand {\n async run(options: SaveCommandOptions): Promise<void> {\n const tbdRoot = await requireInit();\n const dataSyncDir = await resolveDataSyncDir(tbdRoot);\n\n // Validate that at least one target is specified\n if (!options.workspace && !options.dir && !options.outbox) {\n throw new ValidationError('One of --workspace, --dir, or --outbox is required');\n }\n\n // Build save options\n const saveOptions: SaveOptions = {\n workspace: options.workspace,\n dir: options.dir,\n outbox: options.outbox,\n updatesOnly: options.updatesOnly,\n };\n\n if (this.checkDryRun('Would save issues to workspace', saveOptions)) {\n return;\n }\n\n const spinner = this.output.spinner('Saving issues...');\n\n const result = await this.execute(async () => {\n return await saveToWorkspace(tbdRoot, dataSyncDir, saveOptions);\n }, 'Failed to save issues');\n\n spinner.stop();\n\n if (!result) {\n return;\n }\n\n // Format output\n const targetName = options.outbox ? 'outbox' : (options.workspace ?? options.dir ?? 'unknown');\n\n this.output.data(\n {\n saved: result.saved,\n conflicts: result.conflicts,\n target: targetName,\n totalSource: result.totalSource,\n filtered: result.filtered,\n },\n () => {\n if (result.saved === 0) {\n if (result.filtered) {\n this.output.info(`No issues to save (0 of ${result.totalSource} issues have updates)`);\n } else {\n this.output.info('No issues to save');\n }\n } else {\n if (result.filtered) {\n this.output.success(\n `Saved ${result.saved} issue(s) to ${targetName} (${result.saved} of ${result.totalSource} filtered)`,\n );\n } else {\n this.output.success(`Saved ${result.saved} issue(s) to ${targetName}`);\n }\n if (result.conflicts > 0) {\n this.output.warn(`${result.conflicts} conflict(s) moved to attic`);\n }\n }\n },\n );\n\n // Remind user to commit if saving to workspace\n if (options.workspace \|\| options.outbox) {\n const colors = this.output.getColors();\n console.log(\n colors.dim(\n `\\nRemember to commit: git add .tbd/workspaces && git commit -m \"tbd: save workspace\"`,\n ),\n );\n }\n }\n}\n\nexport const saveCommand = new Command('save')\n .description('Save issues to a workspace or directory')\n .option('--workspace <name>', 'Save to named workspace under .tbd/workspaces/')\n .option('--dir <path>', 'Save to arbitrary directory')\n .option('--outbox', 'Shortcut for --workspace=outbox --updates-only')\n .option('--updates-only', 'Only save issues modified since last sync')\n .action(async (options, command) => {\n const handler = new SaveHandler(command);\n await handler.run(options);\n });\n","/\n `tbd workspace` - Workspace management commands.\n \n Workspaces are named directories for sync failure recovery, backups,\n * and bulk editing. Issues can be saved to a workspace and imported back.\n \n See: plan-2026-01-30-workspace-sync-alt.md\n /\n\nimport { Command } from 'commander';\n\nimport { BaseCommand } from '../lib/base-command.js';\nimport { requireInit, NotFoundError, ValidationError } from '../lib/errors.js';\nimport {\n listWorkspacesWithCounts,\n deleteWorkspace,\n workspaceExists,\n} from '../../file/workspace.js';\nimport { isValidWorkspaceName } from '../../lib/paths.js';\n\n/\n List all workspaces with issue counts.\n /\nclass WorkspaceListHandler extends BaseCommand {\n async run(): Promise<void> {\n const tbdRoot = await requireInit();\n\n const workspaces = await listWorkspacesWithCounts(tbdRoot);\n\n this.output.data(workspaces, () => {\n const colors = this.output.getColors();\n if (workspaces.length === 0) {\n console.log('No workspaces');\n return;\n }\n\n // Calculate column widths\n const maxNameLen = Math.max(9, ...workspaces.map((ws) => ws.name.length)); // 9 = \"WORKSPACE\".length\n const countWidth = 6;\n\n // Header\n const header = `${colors.dim('WORKSPACE'.padEnd(maxNameLen))} ${colors.dim('open'.padStart(countWidth))} ${colors.dim('in_progress'.padStart(11))} ${colors.dim('closed'.padStart(countWidth))} ${colors.dim('total'.padStart(countWidth))}`;\n console.log(header);\n\n // Rows\n for (const ws of workspaces) {\n const { name, counts } = ws;\n const row = `${name.padEnd(maxNameLen)} ${String(counts.open).padStart(countWidth)} ${String(counts.in_progress).padStart(11)} ${String(counts.closed).padStart(countWidth)} ${String(counts.total).padStart(countWidth)}`;\n console.log(row);\n }\n });\n }\n}\n\n/\n Delete a workspace.\n /\nclass WorkspaceDeleteHandler extends BaseCommand {\n async run(name: string, options: { force?: boolean }): Promise<void> {\n const tbdRoot = await requireInit();\n\n // Validate workspace name\n if (!isValidWorkspaceName(name)) {\n throw new ValidationError(\n `Invalid workspace name: \"${name}\". Use lowercase alphanumeric characters, hyphens, and underscores.`,\n );\n }\n\n // Check if workspace exists\n const exists = await workspaceExists(tbdRoot, name);\n if (!exists && !options.force) {\n throw new NotFoundError('Workspace', name);\n }\n\n if (this.checkDryRun('Would delete workspace', { name })) {\n return;\n }\n\n await this.execute(async () => {\n await deleteWorkspace(tbdRoot, name);\n }, 'Failed to delete workspace');\n\n this.output.success(`Deleted workspace \"${name}\"`);\n }\n}\n\nconst listWorkspaceCommand = new Command('list')\n .description('List all workspaces')\n .action(async (_options, command) => {\n const handler = new WorkspaceListHandler(command);\n await handler.run();\n });\n\nconst deleteWorkspaceCommand = new Command('delete')\n .description('Delete a workspace')\n .argument('<name>', 'Workspace name to delete')\n .option('--force', 'Delete without error if workspace does not exist')\n .action(async (name, options, command) => {\n const handler = new WorkspaceDeleteHandler(command);\n await handler.run(name, options);\n });\n\nexport const workspaceCommand = new Command('workspace')\n .description('Manage workspaces for sync recovery and backups')\n .addCommand(listWorkspaceCommand)\n .addCommand(deleteWorkspaceCommand);\n","/\n CLI program setup using Commander.js\n \n See: research-modern-typescript-cli-patterns.md\n /\n\nimport { Command } from 'commander';\n\nimport { VERSION } from './lib/version.js';\nimport {\n configureColoredHelp,\n createColoredHelpConfig,\n createHelpEpilog,\n getColorOptionFromArgv,\n} from './lib/output.js';\nimport { initCommand } from './commands/init.js';\nimport { createCommand } from './commands/create.js';\nimport { listCommand } from './commands/list.js';\nimport { showCommand } from './commands/show.js';\nimport { updateCommand } from './commands/update.js';\nimport { closeCommand } from './commands/close.js';\nimport { reopenCommand } from './commands/reopen.js';\nimport { readyCommand } from './commands/ready.js';\nimport { blockedCommand } from './commands/blocked.js';\nimport { staleCommand } from './commands/stale.js';\nimport { labelCommand } from './commands/label.js';\nimport { depCommand } from './commands/dep.js';\nimport { syncCommand } from './commands/sync.js';\nimport { searchCommand } from './commands/search.js';\nimport { statusCommand } from './commands/status.js';\nimport { statsCommand } from './commands/stats.js';\nimport { doctorCommand } from './commands/doctor.js';\nimport { configCommand } from './commands/config.js';\nimport { atticCommand } from './commands/attic.js';\nimport { importCommand } from './commands/import.js';\nimport { docsCommand } from './commands/docs.js';\nimport { closeProtocolCommand } from './commands/closing.js';\nimport { designCommand } from './commands/design.js';\nimport { readmeCommand } from './commands/readme.js';\nimport { uninstallCommand } from './commands/uninstall.js';\nimport { primeCommand } from './commands/prime.js';\nimport { skillCommand } from './commands/skill.js';\nimport { shortcutCommand } from './commands/shortcut.js';\nimport { guidelinesCommand } from './commands/guidelines.js';\nimport { templateCommand } from './commands/template.js';\nimport { setupCommand } from './commands/setup.js';\nimport { saveCommand } from './commands/save.js';\nimport { workspaceCommand } from './commands/workspace.js';\nimport { CLIError } from './lib/errors.js';\n\n/\n Create and configure the CLI program.\n /\nfunction createProgram(): Command {\n const program = new Command()\n .name('tbd')\n .description('Git-native issue tracking for AI agents and humans')\n .version(VERSION, '--version', 'Show version number')\n .helpOption('--help', 'Display help for command')\n .showHelpAfterError('(add --help for additional information)');\n\n // Configure colored help output (respects --color option)\n configureColoredHelp(program);\n\n // Global options\n program\n .option('--dry-run', 'Show what would be done without making changes')\n .option('--verbose', 'Enable verbose output')\n .option('--quiet', 'Suppress non-essential output')\n .option('--json', 'Output as JSON')\n .option('--color <when>', 'Colorize output: auto, always, never', 'auto')\n .option('--non-interactive', 'Disable all prompts, fail if input required')\n .option('--yes', 'Assume yes to confirmation prompts')\n .option('--no-sync', 'Skip automatic sync after write operations')\n .option('--debug', 'Show internal IDs alongside public IDs for debugging');\n\n // Add commands in logical groups\n // Note: commandsGroup() sets the heading for all following addCommand() calls\n\n program.commandsGroup('Documentation:');\n program.addCommand(readmeCommand);\n program.addCommand(primeCommand);\n program.addCommand(skillCommand);\n program.addCommand(shortcutCommand);\n program.addCommand(guidelinesCommand);\n program.addCommand(templateCommand);\n program.addCommand(closeProtocolCommand);\n program.addCommand(docsCommand);\n program.addCommand(designCommand);\n\n program.commandsGroup('Setup & Configuration:');\n program.addCommand(initCommand);\n program.addCommand(configCommand);\n program.addCommand(setupCommand);\n\n program.commandsGroup('Working With Issues:');\n\n program.addCommand(createCommand);\n program.addCommand(showCommand);\n program.addCommand(updateCommand);\n program.addCommand(closeCommand);\n program.addCommand(reopenCommand);\n program.addCommand(searchCommand);\n\n program.commandsGroup('Views and Filtering:');\n program.addCommand(readyCommand);\n program.addCommand(listCommand);\n program.addCommand(blockedCommand);\n program.addCommand(staleCommand);\n\n program.commandsGroup('Labels and Dependencies:');\n program.addCommand(depCommand);\n program.addCommand(labelCommand);\n\n program.commandsGroup('Sync and Status:');\n program.addCommand(syncCommand);\n program.addCommand(saveCommand);\n program.addCommand(statusCommand);\n program.addCommand(statsCommand);\n\n program.commandsGroup('Maintenance:');\n program.addCommand(doctorCommand);\n program.addCommand(atticCommand);\n program.addCommand(workspaceCommand);\n program.addCommand(importCommand);\n program.addCommand(uninstallCommand);\n\n // Apply colored help to all commands recursively\n // Note: addCommand() does NOT inherit parent's configureHelp settings,\n // unlike command() which does inherit. So we must apply manually.\n applyColoredHelpToAllCommands(program);\n\n return program;\n}\n\n/\n Apply colored help configuration and epilog to all commands recursively.\n * This is needed because Commander.js's addCommand() does not inherit\n * configureHelp settings from the parent command.\n /\nfunction applyColoredHelpToAllCommands(program: Command): void {\n const colorOption = getColorOptionFromArgv();\n const helpConfig = createColoredHelpConfig(colorOption);\n const epilog = createHelpEpilog(colorOption);\n\n // Add epilog to main program only - it shows for all help including subcommands\n program.addHelpText('afterAll', `\\n${epilog}`);\n\n const applyRecursively = (cmd: Command) => {\n cmd.configureHelp(helpConfig);\n for (const sub of cmd.commands) {\n applyRecursively(sub);\n }\n };\n\n for (const cmd of program.commands) {\n applyRecursively(cmd);\n }\n}\n\n/\n Check if --json flag is present in argv.\n /\nfunction isJsonMode(): boolean {\n return process.argv.includes('--json');\n}\n\n/\n Check if --debug flag is present in argv.\n /\nfunction isDebugMode(): boolean {\n return process.argv.includes('--debug');\n}\n\n/\n Output error in the appropriate format (JSON or text).\n * In debug mode, shows full error details and stack trace.\n /\nfunction outputError(message: string, error?: Error): void {\n const debugMode = isDebugMode();\n\n if (isJsonMode()) {\n const errorObj: { error: string; type?: string; details?: string; stack?: string } = {\n error: message,\n };\n if (error instanceof CLIError) {\n errorObj.type = error.name;\n }\n if (error && error.message !== message) {\n errorObj.details = error.message;\n }\n if (debugMode && error?.stack) {\n errorObj.stack = error.stack;\n }\n console.error(JSON.stringify(errorObj));\n } else {\n console.error(`Error: ${message}`);\n if (debugMode && error?.stack) {\n console.error('');\n console.error('Stack trace:');\n console.error(error.stack);\n }\n }\n}\n\n/\n Check if running with no command (just options or nothing).\n * Returns true if: `tbd`, `tbd --help`, `tbd --version`, `tbd --color never`\n * Returns false if there's a command: `tbd list`, `tbd show foo`\n /\nfunction hasNoCommand(): boolean {\n // process.argv is: [node, script, ...args]\n const rawArgs = process.argv.slice(2);\n\n // Global options that take a value (space-separated form)\n const optionsWithValues = new Set(['--color']);\n\n const nonOptionArgs: string[] = [];\n let skipNext = false;\n\n for (const arg of rawArgs) {\n if (skipNext) {\n // This arg is a value for the previous option, skip it\n skipNext = false;\n continue;\n }\n\n if (arg.startsWith('-')) {\n // Check if this option takes a value (and doesn't use = syntax)\n const optionName = arg.includes('=') ? arg.split('=')[0] : arg;\n if (optionsWithValues.has(optionName!) && !arg.includes('=')) {\n skipNext = true;\n }\n continue;\n }\n\n // This is a non-option argument (potential command)\n nonOptionArgs.push(arg);\n }\n\n return nonOptionArgs.length === 0;\n}\n\n/\n Run the CLI. This is the main entry point.\n */\nexport async function runCli(): Promise<void> {\n const program = createProgram();\n\n // If no command specified (and not help/version), run prime by default\n // But only if no --help or --version flags\n const isHelpOrVersion =\n process.argv.includes('--help') \|\|\n process.argv.includes('-h') \|\|\n process.argv.includes('--version') \|\|\n process.argv.includes('-V');\n\n if (hasNoCommand() && !isHelpOrVersion) {\n // Insert 'prime' as the command\n process.argv.splice(2, 0, 'prime');\n }\n\n try {\n await program.parseAsync(process.argv);\n } catch (error) {\n if (error instanceof CLIError) {\n outputError(error.message, error);\n process.exit(error.exitCode);\n }\n // Unexpected error\n const message = error instanceof Error ? error.message : String(error);\n outputError(message, error instanceof Error ? error : undefined);\n process.exit(1);\n }\n}\n\n// Handle SIGINT (Ctrl+C)\nprocess.on('SIGINT', () => {\n console.error('\\nInterrupted');\n process.exit(130); // 128 + 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