genoverse 4.0.9 → 4.1.0-alpha.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (93) hide show
  1. package/.github/workflows/test.yml +1 -1
  2. package/dist/171.genoverse.js +2 -0
  3. package/dist/171.genoverse.js.map +1 -0
  4. package/dist/2463b90d9a316e4e5294.woff2 +0 -0
  5. package/dist/2582b0e4bcf85eceead0.ttf +0 -0
  6. package/dist/298.genoverse.js +2 -0
  7. package/dist/298.genoverse.js.map +1 -0
  8. package/dist/{394.css → 347.css} +1 -1
  9. package/dist/{394.css.map → 347.css.map} +1 -1
  10. package/dist/347.genoverse.js +2 -0
  11. package/dist/347.genoverse.js.map +1 -0
  12. package/dist/{949.css → 407.css} +27 -27
  13. package/dist/{952.css.map → 407.css.map} +1 -1
  14. package/dist/{729.css → 423.css} +1 -1
  15. package/dist/{729.css.map → 423.css.map} +1 -1
  16. package/dist/423.genoverse.js +2 -0
  17. package/dist/423.genoverse.js.map +1 -0
  18. package/dist/{547.css → 47.css} +1 -1
  19. package/dist/47.css.map +1 -0
  20. package/dist/{166.genoverse.js → 47.genoverse.js} +1 -1
  21. package/dist/{129.css → 512.css} +1 -1
  22. package/dist/{129.css.map → 512.css.map} +1 -1
  23. package/dist/512.genoverse.js +2 -0
  24. package/dist/512.genoverse.js.map +1 -0
  25. package/dist/{232.css → 52.css} +1 -1
  26. package/dist/52.css.map +1 -0
  27. package/dist/52.genoverse.js +2 -0
  28. package/dist/52.genoverse.js.map +1 -0
  29. package/dist/758.css +23 -0
  30. package/dist/758.css.map +1 -0
  31. package/dist/840.genoverse.js +2 -0
  32. package/dist/840.genoverse.js.map +1 -0
  33. package/dist/{547.genoverse.js → 895.genoverse.js} +1 -1
  34. package/dist/89999bdf5d835c012025.woff2 +0 -0
  35. package/dist/914997e1bdfc990d0897.ttf +0 -0
  36. package/dist/{530.css → 943.css} +1 -1
  37. package/dist/{530.css.map → 943.css.map} +1 -1
  38. package/dist/943.genoverse.js +2 -0
  39. package/dist/943.genoverse.js.map +1 -0
  40. package/dist/{469.css → 966.css} +1 -1
  41. package/dist/{469.css.map → 966.css.map} +1 -1
  42. package/dist/966.genoverse.js +2 -0
  43. package/dist/966.genoverse.js.map +1 -0
  44. package/dist/{952.css → 984.css} +27 -27
  45. package/dist/{949.css.map → 984.css.map} +1 -1
  46. package/dist/984.genoverse.js +2 -0
  47. package/dist/984.genoverse.js.map +1 -0
  48. package/dist/genoverse.js +1 -1
  49. package/dist/genoverse.js.map +1 -1
  50. package/eslint.config.js +176 -0
  51. package/genoverse-4.1.0-alpha.2.tgz +0 -0
  52. package/package.json +18 -10
  53. package/src/js/Genoverse.js +7 -5
  54. package/src/js/plugins/controlPanel.js +4 -3
  55. package/src/js/plugins/fileDrop.js +4 -2
  56. package/test/View/__snapshots__/render-chromosome.test.js.snap +2 -2
  57. package/test/View/__snapshots__/render-highlights.test.js.snap +3 -3
  58. package/test/View/__snapshots__/render-labels.test.js.snap +74 -74
  59. package/test/View/__snapshots__/render-legends.test.js.snap +3 -3
  60. package/test/View/__snapshots__/render-scalebar.test.js.snap +12 -12
  61. package/test/View/__snapshots__/render-scaleline.test.js.snap +15 -15
  62. package/test/View/__snapshots__/render-sequence.test.js.snap +5 -5
  63. package/test/track_config/__snapshots__/config-settings.test.js.snap +9 -9
  64. package/utils/devServer.js +14 -1
  65. package/dist/0caf4c6cf244a90efcc5.woff2 +0 -0
  66. package/dist/0d03b1bbd1d62c1e1284.ttf +0 -0
  67. package/dist/129.genoverse.js +0 -2
  68. package/dist/129.genoverse.js.map +0 -1
  69. package/dist/216.css +0 -20
  70. package/dist/216.css.map +0 -1
  71. package/dist/232.css.map +0 -1
  72. package/dist/232.genoverse.js +0 -2
  73. package/dist/232.genoverse.js.map +0 -1
  74. package/dist/394.genoverse.js +0 -2
  75. package/dist/394.genoverse.js.map +0 -1
  76. package/dist/469.genoverse.js +0 -2
  77. package/dist/469.genoverse.js.map +0 -1
  78. package/dist/530.genoverse.js +0 -2
  79. package/dist/530.genoverse.js.map +0 -1
  80. package/dist/547.css.map +0 -1
  81. package/dist/59edf72a325ac2048d60.woff2 +0 -0
  82. package/dist/804.genoverse.js +0 -2
  83. package/dist/804.genoverse.js.map +0 -1
  84. package/dist/842.genoverse.js +0 -2
  85. package/dist/842.genoverse.js.map +0 -1
  86. package/dist/893.genoverse.js +0 -2
  87. package/dist/893.genoverse.js.map +0 -1
  88. package/dist/949.genoverse.js +0 -2
  89. package/dist/949.genoverse.js.map +0 -1
  90. package/dist/952.genoverse.js +0 -2
  91. package/dist/952.genoverse.js.map +0 -1
  92. package/dist/e615bbcb258550973c16.ttf +0 -0
  93. /package/dist/{166.css → 895.css} +0 -0
package/dist/298.genoverse.js ADDED
@@ -0,0 +1,2 @@
1
+ "use 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84400000, 'type': 'gpos100' },\n { 'id': 'p31.2', 'start': 68500001, 'end': 69300000, 'type': 'gneg' },\n { 'id': 'p31.3', 'start': 60800001, 'end': 68500000, 'type': 'gpos50' },\n { 'id': 'p32.1', 'start': 58500001, 'end': 60800000, 'type': 'gneg' },\n { 'id': 'p32.2', 'start': 55600001, 'end': 58500000, 'type': 'gpos50' },\n { 'id': 'p32.3', 'start': 50200001, 'end': 55600000, 'type': 'gneg' },\n { 'id': 'p33', 'start': 46300001, 'end': 50200000, 'type': 'gpos75' },\n { 'id': 'p34.1', 'start': 43700001, 'end': 46300000, 'type': 'gneg' },\n { 'id': 'p34.2', 'start': 39600001, 'end': 43700000, 'type': 'gpos25' },\n { 'id': 'p34.3', 'start': 34300001, 'end': 39600000, 'type': 'gneg' },\n { 'id': 'p35.1', 'start': 32300001, 'end': 34300000, 'type': 'gpos25' },\n { 'id': 'p35.2', 'start': 29900001, 'end': 32300000, 'type': 'gneg' },\n { 'id': 'p35.3', 'start': 27600001, 'end': 29900000, 'type': 'gpos25' },\n { 'id': 'p36.11', 'start': 23600001, 'end': 27600000, 'type': 'gneg' },\n { 'id': 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@@ -111,4 +111,4 @@
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113
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package/dist/{394.css.map → 347.css.map} RENAMED
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right: 10px; border-bottom-style: solid; border-top: none; border-left-color: transparent; border-right-color: transparent;}\n.tipsy-s .tipsy-arrow { bottom: 0; left: 50%; margin-left: -5px; border-top-style: solid; border-bottom: none; border-left-color: transparent; border-right-color: transparent; }\n.tipsy-sw .tipsy-arrow { bottom: 0; left: 10px; border-top-style: solid; border-bottom: none; border-left-color: transparent; border-right-color: transparent; }\n.tipsy-se .tipsy-arrow { bottom: 0; right: 10px; border-top-style: solid; border-bottom: none; border-left-color: transparent; border-right-color: transparent; }\n.tipsy-e .tipsy-arrow { right: 0; top: 50%; margin-top: -5px; border-left-style: solid; border-right: none; border-top-color: transparent; border-bottom-color: transparent; }\n.tipsy-w .tipsy-arrow { left: 0; top: 50%; margin-top: -5px; border-right-style: solid; border-left: none; border-top-color: transparent; border-bottom-color: transparent; }\n\n.gv-wrapper-tooltip { position: absolute; left: 50%; top: 60px; }\n\n.genoverse .tooltip { z-index: 1000; }","@import url('./tooltips.css');\n\n.gv-karyotype-plugin .gv-karyotype-container {\n height: 50px;\n overflow: hidden;\n box-shadow: inset 0 0 33px -7px rgba(24, 36, 56, 0.97);\n border: 1px solid #000;\n background-color: #FFF;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-wrapper {\n border: 0;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-chromosome {\n margin: 15px;\n position: relative;\n height: calc(100% - 30px);\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-image-container {\n box-shadow: 0 0 33px -7px #CCC inset;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-karyotype-viewpoint-wrapper {\n position: relative;\n height: 70%;\n top: -85%;\n margin: 0 15px;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-karyotype-viewpoint {\n background-color: rgba(222, 84, 35, 0.37);\n border: 1px dashed #E6380D;\n box-shadow: 0 0 3px 2px rgba(237, 237, 237, 0.4) inset, 0 0 4px 0 rgba(116, 116, 116, 0.7);\n height: 100%;\n position: absolute;\n z-index: 50;\n cursor: grab;\n cursor: -moz-grab;\n cursor: -webkit-grab;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .ui-resizable-e {\n cursor: e-resize;\n height: 100%;\n right: -5px;\n top: 0;\n width: 7px;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .ui-resizable-w {\n cursor: w-resize;\n height: 100%;\n left: -5px;\n top: 0;\n width: 7px;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .ui-resizable-handle {\n display: block;\n font-size: 0.1px;\n position: absolute;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-chromosome .gv-label-container {\n background: transparent;\n box-shadow: none;\n border: none;\n cursor: default;\n width: auto;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-chromosome .gv-label-container .gv-name {\n color: #000;\n float: none;\n left: 0 !important;\n margin: 0;\n overflow: auto;\n position: relative;\n text-shadow: none;\n width: 100%;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container.gv-no-label .gv-wrapper {\n margin-left: 0;\n}\n"],"names":[],"sourceRoot":""}
1
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left: 50%; top: 60px; }\n\n.genoverse .tooltip { z-index: 1000; }","@import url('./tooltips.css');\n\n.gv-karyotype-plugin .gv-karyotype-container {\n height: 50px;\n overflow: hidden;\n box-shadow: inset 0 0 33px -7px rgba(24, 36, 56, 0.97);\n border: 1px solid #000;\n background-color: #FFF;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-wrapper {\n border: 0;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-chromosome {\n margin: 15px;\n position: relative;\n height: calc(100% - 30px);\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-image-container {\n box-shadow: 0 0 33px -7px #CCC inset;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-karyotype-viewpoint-wrapper {\n position: relative;\n height: 70%;\n top: -85%;\n margin: 0 15px;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-karyotype-viewpoint {\n background-color: rgba(222, 84, 35, 0.37);\n border: 1px dashed #E6380D;\n box-shadow: 0 0 3px 2px rgba(237, 237, 237, 0.4) inset, 0 0 4px 0 rgba(116, 116, 116, 0.7);\n height: 100%;\n position: absolute;\n z-index: 50;\n cursor: grab;\n cursor: -moz-grab;\n cursor: -webkit-grab;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .ui-resizable-e {\n cursor: e-resize;\n height: 100%;\n right: -5px;\n top: 0;\n width: 7px;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .ui-resizable-w {\n cursor: w-resize;\n height: 100%;\n left: -5px;\n top: 0;\n width: 7px;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .ui-resizable-handle {\n display: block;\n font-size: 0.1px;\n position: absolute;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-chromosome .gv-label-container {\n background: transparent;\n box-shadow: none;\n border: none;\n cursor: default;\n width: auto;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container .gv-chromosome .gv-label-container .gv-name {\n color: #000;\n float: none;\n left: 0 !important;\n margin: 0;\n overflow: auto;\n position: relative;\n text-shadow: none;\n width: 100%;\n}\n\n.gv-karyotype-plugin .gv-karyotype-container.gv-no-label .gv-wrapper {\n margin-left: 0;\n}\n"],"names":[],"sourceRoot":""}
package/dist/347.genoverse.js ADDED
@@ -0,0 +1,2 @@
1
+ "use strict";(self.webpackChunkgenoverse=self.webpackChunkgenoverse||[]).push([[347],{6347:function(t,e,i){var n=i(2624);e.default={karyotype:function(t){var e=this.jQuery;function i(){var i=e('<div class="gv-chromosome">'),s=e('<div class="gv-karyotype-container">').html(i).insertBefore(this.wrapper),a=this.assembly||this.genomeName,o="".concat(t.showAssembly&&a?"".concat(a,": "):"","Chr ").concat(this.chr);t.showAssembly&&a&&s.addClass("gv-show-assembly");var r=e('<div class="gv-chromosome"><ul class="gv-label-container"><li><span class="gv-name">'.concat(o,"</span></li></ul></div>")).appendTo(s),h=!1===t.karyotypeLabel?0:r.find(".gv-name").outerWidth(!0)+10;r.remove(),this.karyotype=new Genoverse({parent:this,container:i,width:i.width(),genome:this.genome,chr:this.chr,start:1,end:this.chromosomeSize,isStatic:!0,tracks:[n.default.extend({name:o,height:20,featureHeight:20,border:!1,legend:!1,unsortable:!0,click:function(t){var i=this.container.parent().offset().left,n=t.pageX-i,s=this.featurePositions.search({x:n,y:1,w:1,h:1})[0];if(s)if("mouseup"===t.type)this.browser.parent.isStatic||this.browser.parent.moveTo(s.chr,s.start,s.end,!0);else if(this.hoverFeature!==s&&!this.browser.hideTooltip){if(this.container.tipsy("hide"),s.label){var a=i+s.position[this.scale].start+s.position[this.scale].width/2;this.container.attr("title",s.label[0]).tipsy({trigger:"manual",container:"body"}).tipsy("show").data("tipsy").$tip.css("left",function(){return a-e(this).width()/2})}this.hoverFeature=s}},addUserEventHandlers:function(){var t=this;this.base(),this.container.on({mousemove:function(e){t.click(e)},mouseout:function(e){if(t.browser.viewPoint.is(e.relatedTarget)||t.browser.viewPoint.find(e.relatedTarget).length)return!0;t.container.tipsy("hide"),t.hoverFeature=!1}},".gv-image-container"),this.container.on("mousewheel",".gv-image-container, .gv-selector",function(t){t.stopPropagation()})},afterSetName:function(){this.label.css("lineHeight","".concat(this.label.height(),"px"))}})],addUserEventHandlers:function(){},afterInit:function(){this.updatePosition(),this.viewPoint.fadeIn()},afterAddTracks:function(){this.track=this.tracks[0]},afterAddDomElements:function(){var i=this,n=this.parent;function a(){i.hideTooltip=!0,i.track.prop("container").tipsy("hide")}function o(t,s){i.hideTooltip=!1;var a=i.chromosomeSize/i.width,o="resizestop"===t.type?e(this).data("ui-resizable").axis:void 0,r="e"===o?n.start:Math.max(Math.floor(s.position.left*a),1),h="w"===o?n.end:"dragstop"===t.type?r+n.length-1:Math.floor(s.helper.outerWidth(!0)*a)+r;r===n.start&&h===n.end||n.moveTo(i.chr,r,h,!0,"dragstop"===t.type)}!1===t.karyotypeLabel?(this.labelContainer.remove(),this.labelContainer=e(),s.addClass("gv-no-label")):this.labelContainer.width(h),this.viewPoint=e('<div class="gv-karyotype-viewpoint-wrapper"><div class="gv-karyotype-viewpoint"></div></div>').appendTo(s).css({left:h,width:this.width-h}).children().on({mousemove:function(t){i.track.controller.click(t)},mouseout:function(t){var n=e(t.relatedTarget);if(i.viewPoint.is(n)||i.viewPoint.find(n).length||"IMG"===n.prop("nodeName")&&n.parent().is(i.track.prop("imgContainers")[0]))return!0;i.track.prop("container").tipsy("hide"),i.track.prop("hoverFeature",!1)}}),n.isStatic||this.viewPoint.draggable({axis:"x",containment:this.wrapper,start:a,stop:o}).resizable({handles:"e, w",containment:"parent",start:a,stop:o,resize:function(t,e){e.element.css("left",Math.max(0,e.position.left)),e.position.left>0?e.element.width(Math.min(e.size.width,e.element.parent().width()-e.position.left)):e.element.width(e.size.width+e.position.left)}})},updatePosition:function(){var t=this.parent.start*this.scale,e=this.parent.end*this.scale-t;this.viewPoint.css({left:t,width:e})}}),!0!==this.loadedPlugins.controlPanel&&e('<li class="gv-unsortable">').height(function(t,e){return e+s.height()}).prependTo(this.labelContainer)}function s(){var t=this.karyotype.container.parent();this.karyotype.destroy(),t.remove(),i.call(this)}this.on({afterInit:i,afterSetRange:function(){this.karyotype&&this.karyotype.updatePosition()},afterSetWidth:s,afterMoveTo:function(t){this.karyotype&&this.karyotype.chr!==t&&s.call(this)}})}}}}]);
2
+ //# sourceMappingURL=347.genoverse.js.map