geneviewer-js 0.3.3 → 0.3.4

package/README.md

@@ -192,7 +192,7 @@ Set `PORT` to use a port other than 4849.
 
 1. Bump `version` in `package.json` and `src/lib/chart.js` (`npm run check`
    compares them).
-2. Commit, then tag and push: `git tag v0.3.3 && git push origin main v0.3.3`.
+2. Commit, then tag and push: `git tag v0.3.4 && git push origin main v0.3.4`.
 
 The publish workflow tests and builds, publishes to npm with provenance,
 and attaches `dist/` to a GitHub release.
@@ -204,7 +204,7 @@ repo and shipped inside the package, so users never download JavaScript
 separately. From the R repo, a maintainer pulls a release with:
 
 ```sh
-Rscript dev/update_js.R 0.3.3
+Rscript dev/update_js.R 0.3.4
 ```
 
 It downloads `geneviewer.core.js`, `geneviewer.css`, `themes.json`, the

package/dist/SHA256SUMS

@@ -1,11 +1,11 @@
-a9bde50f724c27eb1ef23fd14a664e6eef2a2bbd48354f516b68fa4c91088d9c  geneviewer.core.js
+35f5c4c15d24671fd23c141f15537df7572c67eeb57bf7c2cd6b1dba55def09a  geneviewer.core.js
 d96c80adea1ce9ebe5323e153e4f1e014816ef37d502c849741d68f7b3fa6575  geneviewer.css
 78b8e7230f617d026d719dd2a737235cff0dfd2eccea9a45c6a2f3dc8c79012b  geneviewer.d.ts
-720829b0804eee902aea98688ad96b1dc6bd177f276d974708996cddcab4d520  geneviewer.min.js
-427fc223cb67e4b007638a429855ad6f16462e9300bdbd218c3ce0c28c68f91a  geneviewer.min.js.map
-4bb038edb53601af5bd34610b192cc6ae87cc67fd1c20dd19c99e8fbbdf62e5b  geneviewer.mjs
-5a1013558ff1cff7fa0b836a0b049449d94549475fe40ede0f5d90a0f6454e59  geneviewer.standalone.mjs
-b8fbfc2263e580c8778f41125f9ee5727f4ee357432e46913e79d87a75d1d0a3  geneviewer.standalone.mjs.map
-6c10d97166d6ae208888b3c0ba2a9fa1301888e759a49f1761ee5c00843fddff  geneviewerwidget.js
+73e70a79b430782b777b58c2f7f51121aa1302a993f1748874d0ff7a58b3f15e  geneviewer.min.js
+0624f1db0911b27fe9fcb9295579094ec7478ed502e68c7280bd4c6d0c4b51b9  geneviewer.min.js.map
+f0683bbcae0db31509d5429fb0d624b00ab36496f0df9ef2cdd2a04d5bb6fb7f  geneviewer.mjs
+e1bfea55a5c3a6fc7a3d718301b84c3317d75f61ceb723059de418729f1515aa  geneviewer.standalone.mjs
+0be7d7f3913c2a68f2da752cce9a52382ecf884191e475d4e58dbd4a1e27b9f0  geneviewer.standalone.mjs.map
+3be7d90d7a81aaaa4f5cb9249e3209c654146c7ed3d18f3abb5899f592b09533  geneviewerwidget.js
 3d9a1611127c02a515da15b88c46f9da30e0f8ade676919e7502244aef4dd000  spec.d.ts
 65ebaa72b864ba74fabc06aa02d858a0a621e5579dadc0c5d9d7add1ba48f246  themes.json

package/dist/geneviewer.core.js

@@ -3699,11 +3699,19 @@ var geneviewer = (() => {
     x.legend = { group, show: group !== null, width };
     x.legend.style = { width: "100%", backgroundColor: style.backgroundColor ?? null };
     x.saveButton = saveButton;
-    const clusters = cluster2 === null ? ["cluster"] : [...new Set(data.get(cluster2))];
+    const clusterRows = /* @__PURE__ */ new Map();
+    if (cluster2 !== null) {
+      data.get(cluster2).forEach((name, i) => {
+        const rows = clusterRows.get(name);
+        if (rows) rows.push(i);
+        else clusterRows.set(name, [i]);
+      });
+    }
+    const clusters = cluster2 === null ? ["cluster"] : [...clusterRows.keys()];
     const blast = columnNames.includes("BlastP") && columnNames.includes("protein_id");
     const series = /* @__PURE__ */ new Map();
     for (const name of clusters) {
-      const subset = cluster2 === null ? data.copy() : data.filter((i) => data.get(cluster2)[i] === name);
+      const subset = cluster2 === null ? data.copy() : data.rows(clusterRows.get(name));
       subset.set("cluster", name);
       const clusterHeight = typeof height === "string" && /%$/.test(height) ? computeSize2(height, clusters.length) : Number(getRelativeHeight(height, height)) / clusters.length;
       const starts = subset.get("start");
@@ -7326,7 +7334,7 @@ var geneviewer = (() => {
   }
 
   // src/lib/chart.js
-  var version = "0.3.3";
+  var version = "0.3.4";
   var renderSequence = 0;
   var chartCount = 0;
   var activeShortcuts = null;
@@ -8644,26 +8652,29 @@ var geneviewer = (() => {
       redrawZoom(true);
       reportZoom("set");
     };
-    var draw = function() {
+    var keepScroll = function(drawing) {
       var scrolled = [];
       for (var node = el.parentElement; node; node = node.parentElement) {
         if (node.scrollTop || node.scrollLeft) scrolled.push([node, node.scrollTop, node.scrollLeft]);
       }
       var page = el.ownerDocument.scrollingElement;
-      if (page && (page.scrollTop || page.scrollLeft) && !scrolled.some(function(s) {
-        return s[0] === page;
+      if (page && !scrolled.some(function(item) {
+        return item[0] === page;
       })) {
         scrolled.push([page, page.scrollTop, page.scrollLeft]);
       }
       try {
-        drawChart();
+        drawing();
       } finally {
-        scrolled.forEach(function(s) {
-          if (s[0].scrollTop !== s[1]) s[0].scrollTop = s[1];
-          if (s[0].scrollLeft !== s[2]) s[0].scrollLeft = s[2];
+        scrolled.forEach(function(item) {
+          if (item[0].scrollTop !== item[1]) item[0].scrollTop = item[1];
+          if (item[0].scrollLeft !== item[2]) item[0].scrollLeft = item[2];
         });
       }
     };
+    var draw = function() {
+      keepScroll(drawChart);
+    };
     var drawChart = function() {
       cancelDrag();
       zoomCharts = [];
@@ -8803,26 +8814,6 @@ var geneviewer = (() => {
       makeColorBar(graphContainer2, links2, theme2, legendColorBar !== null);
       clipZoomLinks();
     };
-    var keepScroll = function(drawing) {
-      var scrolled = [];
-      for (var node = el.parentElement; node; node = node.parentElement) {
-        if (node.scrollTop || node.scrollLeft) scrolled.push([node, node.scrollTop, node.scrollLeft]);
-      }
-      var page = document.scrollingElement;
-      if (page && !scrolled.some(function(item) {
-        return item[0] === page;
-      })) {
-        scrolled.push([page, page.scrollTop, page.scrollLeft]);
-      }
-      try {
-        drawing();
-      } finally {
-        scrolled.forEach(function(item) {
-          if (item[0].scrollTop !== item[1]) item[0].scrollTop = item[1];
-          if (item[0].scrollLeft !== item[2]) item[0].scrollLeft = item[2];
-        });
-      }
-    };
     var redraw = function() {
       var focused = zoomBar && zoomBar.contains(document.activeElement) ? document.activeElement.getAttribute("data-zoom-part") : null;
       keepScroll(function() {