genesis-compiler 1.8.0 → 1.8.2

package/README.md

@@ -461,6 +461,11 @@ implementing source files.
 Both are derived JSON, not receipts, authority, or correctness claims. An
 extractor warning does not stop ordinary work.
 
+Local package exports whose entry files are excluded from indexing retain their
+declared import paths with unavailable symbol coverage and a diagnostic. They do
+not invalidate the rest of the architecture. After upgrading Genesis, run
+`genesis index` to regenerate an affected snapshot.
+
 The selected Stack decides which structural extractors run. Genesis uses the
 Tree-sitter-backed [ast-grep JavaScript API](https://ast-grep.github.io/guide/api-usage/js-api.html)
 through one shared engine. Built-in adapters cover JavaScript/TypeScript,

package/docs/templates.md

@@ -84,6 +84,9 @@ Genesis never treats partial application code as an empty destination.
 
 The destination keeps its Git history, remotes, branch, meaningful Blueprint,
 collaboration/engineering choices, and authored Stack operation sections.
+An empty bootstrap subsystem map yields to the starter's authored map, keeping
+the imported Program connected to its source. A nonempty destination map remains
+authored project context; incompatible declarations fail validation before copying.
 Template Stack components/packages are combined with existing selections;
 existing complete operation sections take precedence. No dependency command,
 database command, agent, or Git commit runs during import. The result reports

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "genesis-compiler",
-  "version": "1.8.0",
+  "version": "1.8.2",
   "type": "module",
   "description": "An agent-independent prompt, multi-language code-index, cleanup, and verification companion with project agent guidance.",
   "repository": {

package/plugins/genesis/.codex-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "genesis",
-  "version": "1.8.0",
+  "version": "1.8.1",
   "description": "Makes Codex aware of optional Genesis adoption for existing projects.",
   "author": {
     "name": "Mobily Enterprises"

package/src/index/code-indexers/npm-packages.js

@@ -134,6 +134,10 @@ export async function inspectNpmPackages({ projectRoot, discovery, files, indexe
         const point = { importPath, target: entry.target, conditions: entry.conditions, file: canonical(relative) && canonical(publicPath) ? publicPath : null, symbols: [], coverage: 'unsupported' };
         record.entryPoints.push(point);
         if (entry.target.includes('*') || !point.file || !/\.(?:[cm]?js|jsx|tsx?|vue)$/u.test(point.file)) continue;
+        if (owned && !known.has(point.file)) {
+          diagnostics.push({ code: 'NPM_INTERFACE_UNAVAILABLE', path: point.file, message: `${name}: the project-owned public entry is outside the indexed source inventory.` });
+          continue;
+        }
         const file = await read(point.file, { indexed: Boolean(known.has(point.file)) });
         if (file) entries.push({ record, point, file });
       }

package/src/index/template-project.js

@@ -12,6 +12,7 @@ import { runGit, runGitText } from './process.js';
 import { listTemplates, resolveTemplate } from './template-catalog.js';
 import { readGitSnapshot } from './template-source.js';
 import { readStack } from './stack.js';
+import { inspectSubsystems } from './subsystems.js';
 import { writeFileAtomic } from './utils.js';
 import { claudeSkillLinkTarget } from './claude-hooks.js';
 
@@ -111,6 +112,7 @@ export async function applyTemplate({ projectRoot, templateId, stackPackages = [
       if (previous === null || name.startsWith('.genesis/')) continue;
       const { contents, linkTarget } = previous;
       if (name === 'genesis/blueprint.md' && !parseBlueprintSource(contents.toString('utf8')).description) continue;
+      if (name === 'genesis/subsystems.md' && (await inspectSubsystems({ projectRoot: root })).status === 'empty') continue;
       let value = contents;
       if (name === 'genesis/stack.md') value = mergeTemplateStack(stackFile.contents.toString('utf8'), contents.toString('utf8'));
       const location = path.join(stagingRoot, name);