geneseed 4.3.0 → 4.3.1

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Files changed (32) hide show
  1. package/CHANGELOG.md +11 -0
  2. package/SHIPPED.md +1 -1
  3. package/adapters/opencode/plugins/geneseed-context.js +25 -1
  4. package/adapters/opencode/plugins/geneseed-guard.js +25 -1
  5. package/adapters/opencode/plugins/geneseed-learn.js +25 -1
  6. package/docs/concepts/exclusions.md +2 -0
  7. package/docs/concepts/host-matrix.md +2 -1
  8. package/docs/reference/opencode-plugins.md +1 -1
  9. package/harness.config.json +1 -1
  10. package/js/hosts/gitref.mjs +25 -1
  11. package/js/hosts/hosts.mjs +14 -4
  12. package/js/inspect/excludes.mjs +33 -2
  13. package/package.json +1 -1
  14. package/web/dist/assets/{Activity-DDTRkc4M.js → Activity-UiGvYgEl.js} +1 -1
  15. package/web/dist/assets/{ActivityDetail-C41RsH-S.js → ActivityDetail-COXCSeXn.js} +1 -1
  16. package/web/dist/assets/{Dashboard-B0DJ2oUk.js → Dashboard-DkdOUpke.js} +2 -2
  17. package/web/dist/assets/{Docs-DBj7-n9F.js → Docs-TtVyc_Dy.js} +1 -1
  18. package/web/dist/assets/{GreenhouseView-Bz-Q1Xl-.js → GreenhouseView-Bh0xq6Up.js} +1 -1
  19. package/web/dist/assets/{Installs-BNlWdJJE.js → Installs-J3IoSqk6.js} +1 -1
  20. package/web/dist/assets/{JournalView-BkwmfkEy.js → JournalView-BrD33V35.js} +1 -1
  21. package/web/dist/assets/{Laws-CzvMZCUL.js → Laws-Cjkenizx.js} +1 -1
  22. package/web/dist/assets/{Library-BgIpOTHi.js → Library-CKyeB096.js} +1 -1
  23. package/web/dist/assets/{Loops-s_NsuNaQ.js → Loops-D15LDhZO.js} +1 -1
  24. package/web/dist/assets/Markdown-DrXLM6TA.js +65 -0
  25. package/web/dist/assets/{OperatorHudView-CgeWJnPI.js → OperatorHudView-B5CcWoJ6.js} +1 -1
  26. package/web/dist/assets/{Personal-DMM6jfE0.js → Personal-BBdGbJn6.js} +1 -1
  27. package/web/dist/assets/{Tabs-CPpcsYDc.js → Tabs-s8T501po.js} +1 -1
  28. package/web/dist/assets/{drawable-D-fIT_ow.js → drawable-DALqyS4l.js} +1 -1
  29. package/web/dist/assets/index-BP4foUp0.js +2 -0
  30. package/web/dist/index.html +1 -1
  31. package/web/dist/assets/Markdown-C6fRd4A4.js +0 -67
  32. package/web/dist/assets/index-DXIa0ZG_.js +0 -2
package/CHANGELOG.md CHANGED
@@ -8,6 +8,17 @@ label. For the capability ↔ spec map, see [SHIPPED.md](SHIPPED.md).
8
8
 
9
9
  ## [Unreleased]
10
10
 
11
+ ## [4.3.1] — 2026-10-15
12
+
13
+ Patch: a folder excluded from the global harness now stays excluded in its git worktrees.
14
+
15
+ ### Upgrade notes
16
+ - Run `geneseed rebuild-all` once after updating so installed hooks and OpenCode plugins carry the fix.
17
+ - On Claude Code and OpenClaude, a worktree still loads the global `CLAUDE.md` until you commit the `claudeMdExcludes` snippet that `geneseed exclude list` prints into the repo's tracked settings file.
18
+
19
+ ### Fixed
20
+ - **Exclusions cover git worktrees.** A session in a linked worktree of an excluded repo (`git worktree add`, or a tool that keeps worktrees elsewhere on disk) got the whole global harness, because the bypass only matched the working directory's path. The hooks and the three OpenCode plugins now follow the worktree's `.git` file back to the main repository, reading files only. `exclude add` and `exclude list` warn that `settings.local.json` never reaches a worktree and print the snippet to commit; Geneseed writes no tracked file. (#280)
21
+
11
22
  ## [4.3.0] — 2026-10-15
12
23
 
13
24
  Minor: a performance agent, and Deletion Is Deliberate says what counts as recoverable.
package/SHIPPED.md CHANGED
@@ -20,7 +20,7 @@ historical references, not files distributed with the repo.
20
20
  > **On version numbers.** [`harness.config.json`](harness.config.json)'s `version` is a
21
21
  > human-readable label only. The canonical identity of an installed harness is the
22
22
  > **source fingerprint** stamped in `.geneseed-version` (see `geneseed version`), not the
23
- > string. Current label: **4.3.0**.
23
+ > string. Current label: **4.3.1**.
24
24
 
25
25
  ## Capabilities
26
26
 
@@ -85,17 +85,41 @@ const norm = (p) => {
85
85
  }
86
86
  return process.platform === "win32" ? s.toLowerCase() : s
87
87
  }
88
+ // A linked git worktree of an excluded repo is excluded too, wherever it sits on disk — twin of
89
+ // js/hosts/gitref.mjs `mainWorktreeOf`: the worktree's `.git` FILE names its gitdir, whose
90
+ // `commondir` names the shared `.git`; that directory's parent is the main worktree. null for
91
+ // a main worktree, a submodule, a bare repo's worktree, or anything malformed.
92
+ async function mainWorktreeOf(dir) {
93
+ try {
94
+ let root = path.resolve(dir)
95
+ for (;;) {
96
+ try { await fs.stat(path.join(root, ".git")); break } catch { /* walk up */ }
97
+ const up = path.dirname(root)
98
+ if (up === root) return null
99
+ root = up
100
+ }
101
+ const dotgit = path.join(root, ".git")
102
+ if (!(await fs.stat(dotgit)).isFile()) return null
103
+ const m = /^gitdir:\s*(.+?)\s*$/m.exec(await fs.readFile(dotgit, "utf8"))
104
+ if (!m) return null
105
+ const gitdir = path.resolve(root, m[1])
106
+ const common = path.resolve(gitdir, (await fs.readFile(path.join(gitdir, "commondir"), "utf8")).trim())
107
+ return path.basename(common) === ".git" ? path.dirname(common) : null
108
+ } catch { return null }
109
+ }
88
110
  async function sovereignBypass(cwd) {
89
111
  try {
90
112
  const cfg = path.dirname(PLUGIN_DIR) // plugins/ sits directly in <cfg>
91
113
  const raw = await fs.readFile(path.join(cfg, "excludes.json"), "utf8")
92
114
  const entries = (JSON.parse(raw).excludes) || []
93
115
  const here = norm(cwd || process.cwd())
116
+ const main = await mainWorktreeOf(cwd || process.cwd())
117
+ const heres = main ? [here, norm(main)] : [here]
94
118
  for (const e of entries) {
95
119
  const p = typeof e === "string" ? e : e && e.path
96
120
  if (typeof p !== "string" || !p.trim()) continue
97
121
  const base = norm(p.trim()).replace(/[\\/]+$/, "")
98
- if (here === base || here.startsWith(base + path.sep)) return true
122
+ if (heres.some((h) => h === base || h.startsWith(base + path.sep))) return true
99
123
  }
100
124
  } catch { /* degrade to active */ }
101
125
  return false
@@ -72,17 +72,41 @@ const norm = (p) => {
72
72
  }
73
73
  return process.platform === "win32" ? s.toLowerCase() : s
74
74
  }
75
+ // A linked git worktree of an excluded repo is excluded too, wherever it sits on disk — twin of
76
+ // js/hosts/gitref.mjs `mainWorktreeOf`: the worktree's `.git` FILE names its gitdir, whose
77
+ // `commondir` names the shared `.git`; that directory's parent is the main worktree. null for
78
+ // a main worktree, a submodule, a bare repo's worktree, or anything malformed.
79
+ async function mainWorktreeOf(dir) {
80
+ try {
81
+ let root = path.resolve(dir)
82
+ for (;;) {
83
+ try { await fs.stat(path.join(root, ".git")); break } catch { /* walk up */ }
84
+ const up = path.dirname(root)
85
+ if (up === root) return null
86
+ root = up
87
+ }
88
+ const dotgit = path.join(root, ".git")
89
+ if (!(await fs.stat(dotgit)).isFile()) return null
90
+ const m = /^gitdir:\s*(.+?)\s*$/m.exec(await fs.readFile(dotgit, "utf8"))
91
+ if (!m) return null
92
+ const gitdir = path.resolve(root, m[1])
93
+ const common = path.resolve(gitdir, (await fs.readFile(path.join(gitdir, "commondir"), "utf8")).trim())
94
+ return path.basename(common) === ".git" ? path.dirname(common) : null
95
+ } catch { return null }
96
+ }
75
97
  async function sovereignBypass(cwd) {
76
98
  try {
77
99
  const cfg = path.dirname(PLUGIN_DIR) // plugins/ sits directly in <cfg>
78
100
  const raw = await fs.readFile(path.join(cfg, "excludes.json"), "utf8")
79
101
  const entries = (JSON.parse(raw).excludes) || []
80
102
  const here = norm(cwd || process.cwd())
103
+ const main = await mainWorktreeOf(cwd || process.cwd())
104
+ const heres = main ? [here, norm(main)] : [here]
81
105
  for (const e of entries) {
82
106
  const p = typeof e === "string" ? e : e && e.path
83
107
  if (typeof p !== "string" || !p.trim()) continue
84
108
  const base = norm(p.trim()).replace(/[\\/]+$/, "")
85
- if (here === base || here.startsWith(base + path.sep)) return true
109
+ if (heres.some((h) => h === base || h.startsWith(base + path.sep))) return true
86
110
  }
87
111
  } catch { /* degrade to active */ }
88
112
  return false
@@ -67,17 +67,41 @@ const norm = (p) => {
67
67
  }
68
68
  return process.platform === "win32" ? s.toLowerCase() : s
69
69
  }
70
+ // A linked git worktree of an excluded repo is excluded too, wherever it sits on disk — twin of
71
+ // js/hosts/gitref.mjs `mainWorktreeOf`: the worktree's `.git` FILE names its gitdir, whose
72
+ // `commondir` names the shared `.git`; that directory's parent is the main worktree. null for
73
+ // a main worktree, a submodule, a bare repo's worktree, or anything malformed.
74
+ async function mainWorktreeOf(dir) {
75
+ try {
76
+ let root = path.resolve(dir)
77
+ for (;;) {
78
+ try { await fs.stat(path.join(root, ".git")); break } catch { /* walk up */ }
79
+ const up = path.dirname(root)
80
+ if (up === root) return null
81
+ root = up
82
+ }
83
+ const dotgit = path.join(root, ".git")
84
+ if (!(await fs.stat(dotgit)).isFile()) return null
85
+ const m = /^gitdir:\s*(.+?)\s*$/m.exec(await fs.readFile(dotgit, "utf8"))
86
+ if (!m) return null
87
+ const gitdir = path.resolve(root, m[1])
88
+ const common = path.resolve(gitdir, (await fs.readFile(path.join(gitdir, "commondir"), "utf8")).trim())
89
+ return path.basename(common) === ".git" ? path.dirname(common) : null
90
+ } catch { return null }
91
+ }
70
92
  async function sovereignBypass(cwd) {
71
93
  try {
72
94
  const cfg = path.dirname(PLUGIN_DIR) // plugins/ sits directly in <cfg>
73
95
  const raw = await fs.readFile(path.join(cfg, "excludes.json"), "utf8")
74
96
  const entries = (JSON.parse(raw).excludes) || []
75
97
  const here = norm(cwd || process.cwd())
98
+ const main = await mainWorktreeOf(cwd || process.cwd())
99
+ const heres = main ? [here, norm(main)] : [here]
76
100
  for (const e of entries) {
77
101
  const p = typeof e === "string" ? e : e && e.path
78
102
  if (typeof p !== "string" || !p.trim()) continue
79
103
  const base = norm(p.trim()).replace(/[\\/]+$/, "")
80
- if (here === base || here.startsWith(base + path.sep)) return true
104
+ if (heres.some((h) => h === base || h.startsWith(base + path.sep))) return true
81
105
  }
82
106
  } catch { /* degrade to active */ }
83
107
  return false
@@ -42,6 +42,8 @@ What "dormant" means per host:
42
42
 
43
43
  `geneseed exclude remove` undoes all of it.
44
44
 
45
+ **Git worktrees.** A linked worktree of an excluded repo (`git worktree add`) is excluded too, wherever it sits on disk: the hooks and plugins follow its `.git` file back to the main repository. The global `CLAUDE.md` is the exception on Claude Code and OpenClaude: `settings.local.json` is gitignored, so a worktree never gets it. Geneseed writes no tracked file in a repo you told it to leave alone, so `exclude add` and `exclude list` print the snippet to commit yourself in the repo's tracked `.claude/settings.json` (`.openclaude/` for OpenClaude): `"claudeMdExcludes": ["<path to the global CLAUDE.md>"]`.
46
+
45
47
  **Limits.** Globally installed skills and agents stay *listed* by the host — no host offers a per-repo switch for them. And a global install created *after* you added exclusions starts with an empty list: run `geneseed exclude add` again (`geneseed exclude list` flags installs whose lists differ).
46
48
 
47
49
  The web console has the same controls in the **Excluded folders** card on the Harness page, shown once a global install exists.
@@ -19,7 +19,7 @@ Every [host](hosts.md) gets the same content. This table is what each one lets G
19
19
  | Consent before every commit and push | 🔒 permission ask | 🪝 ask | 🪝 warning¹ | 🪝 ask² |
20
20
  | Rule-or-memory write needs your call | ⚙️ speed bump³ | 🪝 ask | 🪝 warning¹ | 🪝 ask² |
21
21
  | User-only skills hidden from the model | 🔒 `permission.skill` deny | ✅ `disable-model-invocation` | ✅ `/`-command, no skill | ✅ `disable-model-invocation` |
22
- | Sovereign-repo exclusions | ⚙️ plugins stand down | ✅ `claudeMdExcludes` | ✅ rules shadow stub | ✅ `claudeMdExcludes` |
22
+ | Sovereign-repo exclusions⁵ | ⚙️ plugins stand down | ✅ `claudeMdExcludes` | ✅ rules shadow stub | ✅ `claudeMdExcludes` |
23
23
  | MCP server wiring | ✅ `mcp` | ✅ `mcpServers` | ✅ `mcp.json` | ✅ `mcpServers` |
24
24
  | Colour themes · LSP · workflow runner · primary agent · `/`-commands | ✅ | ➖ | ➖ | ➖ |
25
25
 
@@ -29,6 +29,7 @@ Every [host](hosts.md) gets the same content. This table is what each one lets G
29
29
  ² **OpenClaude** is a Claude Code fork and gets Claude's hooks and verdicts verbatim, in `~/.openclaude/settings.json` (global) or `.openclaude/settings.local.json` (per repo). **Unverified live** for the same reason.
30
30
  ³ OpenCode's plugin hook can only allow or throw — there is no "ask the user" — so this check stops the first such write once rather than prompting.
31
31
  ⁴ The checks differ in shape: OpenCode's guard plugin blocks writes *to* private-key and credential files by path; the Claude-shaped hook looks at the *content* being written for credential-shaped strings (cloud keys, tokens, private-key blocks) and asks. A `.env` file is exempt on the hook side — that is where a secret is allowed to live.
32
+ ⁵ A linked git worktree of an excluded repo is excluded too: the hooks and plugins follow its `.git` file back to the main repository. `claudeMdExcludes` is the exception — it lives in the gitignored `settings.local.json`, which a worktree never gets — so `geneseed exclude add` and `exclude list` print the snippet to commit yourself. See [Exclusions](exclusions.md).
32
33
 
33
34
  ## The one conditional row
34
35
 
@@ -35,4 +35,4 @@ If a plugin seems silent on OpenCode 2, check that `~/.config/opencode/plugins/`
35
35
 
36
36
  ## Excluded folders
37
37
 
38
- `geneseed-context`, `geneseed-guard` and `geneseed-learn` go dormant inside a folder listed in the global install's `excludes.json` (managed by `geneseed exclude`). See [Exclusions](../concepts/exclusions.md).
38
+ `geneseed-context`, `geneseed-guard` and `geneseed-learn` go dormant inside a folder listed in the global install's `excludes.json` (managed by `geneseed exclude`), and inside any linked git worktree of such a folder. See [Exclusions](../concepts/exclusions.md).
@@ -2,5 +2,5 @@
2
2
  "_comment": "version is a human-readable release label only; the canonical identity of an installed harness is the source fingerprint stamped in .geneseed-version (see `harness version`), not this string.",
3
3
  "theme": "neutral",
4
4
  "product": "Geneseed",
5
- "version": "4.3.0"
5
+ "version": "4.3.1"
6
6
  }
@@ -6,7 +6,7 @@
6
6
  * launched-loop evidence reader were duplicated in `js/hosts/hooks.mjs` (the hook's
7
7
  * `loopExempt`) and `js/loop/cli.mjs` (the CLI's commit-message writer) — two copies of the
8
8
  * same worktree-following walk that could silently drift apart. Both now import this one.
9
- * `js/hosts/hooks.mjs` is NOT a safe shared home for it: it pulls in `node:child_process`
9
+ * `js/hosts/hooks.mjs` is NOT a safe shared home for it: it pulls in `child_process`
10
10
  * (`spawnSync`, for the destructive-act guard's own concerns) and the hook-dispatch
11
11
  * machinery (`jsonDumpsCompact`, the ledger), none of which `js/loop/cli.mjs` — under a hard
12
12
  * `child_process` ban like every other closure that feeds `bin/geneseed-cli.mjs` — may ever
@@ -54,6 +54,30 @@ export function gitDirOf(root) {
54
54
  return dotgit;
55
55
  }
56
56
 
57
+ /**
58
+ * The MAIN worktree's root when `cwd` stands in a LINKED worktree (`git worktree add`), else
59
+ * null — a main worktree, a submodule (its gitdir has no `commondir`), a bare repository's
60
+ * worktree, no repo, or a malformed link. Never throws.
61
+ *
62
+ * WHY: a linked worktree can live anywhere on disk (Orca puts them under its own workspaces
63
+ * folder), so a path-prefix test against the repo the user EXCLUDED never matches it, and the
64
+ * global harness woke up inside a sovereign repo's worktree. The worktree's `.git` FILE names
65
+ * `<common>/.git/worktrees/<n>`, whose `commondir` (relative to it, usually `../..`) names the
66
+ * shared `.git`; that directory's parent is the main worktree. Read off disk, never by
67
+ * spawning git: `sovereignBypass` runs on every hook call and feeds the CLI's `child_process` ban.
68
+ */
69
+ export function mainWorktreeOf(cwd) {
70
+ try {
71
+ const root = gitRootOf(cwd);
72
+ if (!root || !statSync(path.join(root, '.git')).isFile()) return null;
73
+ const gitdir = gitDirOf(root);
74
+ const common = path.resolve(gitdir, readFileSync(path.join(gitdir, 'commondir'), 'utf8').trim());
75
+ return path.basename(common) === '.git' ? path.dirname(common) : null;
76
+ } catch {
77
+ return null;
78
+ }
79
+ }
80
+
57
81
  /**
58
82
  * The branch checked out in `cwd`, read from .git/HEAD without spawning git. null on
59
83
  * anything unexpected (detached HEAD, no repo, a malformed worktree link, unreadable) — the
@@ -19,6 +19,7 @@ import path from 'node:path';
19
19
  import os from 'node:os';
20
20
  import { printErr, withDiscardableStderr, isDir, isFile, readText } from '../lib/fs.mjs';
21
21
  import { toPlatformPath, normcase } from '../lib/paths.mjs';
22
+ import { mainWorktreeOf } from './gitref.mjs';
22
23
 
23
24
  /** `_build_global.GLOBAL_MANIFEST` — the file whose presence means "a global install". */
24
25
  export const GLOBAL_MANIFEST = '.geneseed-manifest.json';
@@ -39,6 +40,11 @@ export const GATE_LEDGER = path.join('notebook', 'gates.jsonl');
39
40
  * under the transitive `child_process` ban that `hooks.mjs`'s `learn` verb breaks). A
40
41
  * second copy in `js/inspect/` was the alternative, and a copy is what let the `~user`
41
42
  * refusal diverge between the two CLIs once already (see `hooks.mjs`'s header).
43
+ *
44
+ * A LINKED GIT WORKTREE OF AN EXCLUDED REPO IS EXCLUDED TOO, wherever it sits on disk: the
45
+ * cwd matches, or the main worktree `mainWorktreeOf` reads off the `.git` file does. An
46
+ * exclusion names a repository the user keeps sovereign, not a folder; a worktree elsewhere
47
+ * (Orca's workspaces) otherwise woke the full global harness inside it.
42
48
  */
43
49
  export function sovereignBypass(root) {
44
50
  if (!root) return false;
@@ -49,12 +55,16 @@ export function sovereignBypass(root) {
49
55
  } catch {
50
56
  return false;
51
57
  }
52
- let cwd;
58
+ let heres;
53
59
  try {
54
- cwd = normcase(resolvePath(process.cwd()));
60
+ heres = [normcase(resolvePath(process.cwd()))];
55
61
  } catch {
56
62
  return false;
57
63
  }
64
+ try {
65
+ const main = mainWorktreeOf(process.cwd());
66
+ if (main) heres.push(normcase(resolvePath(main)));
67
+ } catch { /* an unresolvable main worktree degrades to the cwd test alone */ }
58
68
  for (const entry of entries) {
59
69
  const raw = (entry && typeof entry === 'object' ? entry.path : entry) || '';
60
70
  if (typeof raw !== 'string' || !raw.trim()) continue;
@@ -67,7 +77,7 @@ export function sovereignBypass(root) {
67
77
  // and this caller catches: the reference prints nothing here, so replaying the
68
78
  // message would be a stderr divergence on every hook call for one bad entry.
69
79
  //
70
- // `resolvePath`, the same resolution as `cwd` above: symlinks and junctions are followed on
80
+ // `resolvePath`, the same resolution as `heres` above: symlinks and junctions are followed on
71
81
  // BOTH sides, so an entry spelled through a link matches the real directory the session
72
82
  // stands in (and the OpenCode plugins' `norm` applies the identical rule).
73
83
  base = withDiscardableStderr(
@@ -79,7 +89,7 @@ export function sovereignBypass(root) {
79
89
  // Skipping errs toward the gate staying ACTIVE, which is the safe direction.
80
90
  continue;
81
91
  }
82
- if (cwd === base || cwd.startsWith(base + path.sep)) return true;
92
+ if (heres.some((h) => h === base || h.startsWith(base + path.sep))) return true;
83
93
  }
84
94
  return false;
85
95
  }
@@ -32,6 +32,28 @@ import { normcase, toPlatformPath } from '../lib/paths.mjs';
32
32
  const localSettings = (repo, host) =>
33
33
  path.join(repo, HOSTS.find((h) => h.host === host).projectMarker, 'settings.local.json');
34
34
 
35
+ /** The `claudeMdExcludes` entry naming a Claude-family global install's CLAUDE.md, as wired. */
36
+ const claudeMdEntry = (cfg) => resolvePath(path.join(cfg, 'CLAUDE.md')).split(path.sep).join('/');
37
+
38
+ /**
39
+ * The worktree caveat, or null when it does not apply: a Claude-family install and an
40
+ * excluded folder that is a git repository (a `.git` there — no repo, no worktrees).
41
+ *
42
+ * WHY A WARNING AND NOT A WRITE: `settings.local.json` is gitignored, so a `git worktree add`
43
+ * of the excluded repo never carries it and the global CLAUDE.md loads there again (the hooks
44
+ * do stand down — `sovereignBypass` follows the worktree to its main repo). The one durable
45
+ * fix is the repo's TRACKED `settings.json`, and the user decided (2026-10) Geneseed never
46
+ * writes a tracked file in a repo it was told to leave alone — so it prints the snippet.
47
+ */
48
+ function worktreeNote(host, cfg, repo) {
49
+ if (host !== 'claude' && host !== 'openclaude') return null;
50
+ if (!existsSync(path.join(repo, '.git'))) return null;
51
+ const marker = HOSTS.find((h) => h.host === host).projectMarker;
52
+ return `${host}: git worktrees of this repo do not get the gitignored `
53
+ + `${marker}/settings.local.json and still load the global CLAUDE.md — to stop that, commit `
54
+ + `to the repo's ${marker}/settings.json: "claudeMdExcludes": ["${claudeMdEntry(cfg)}"]`;
55
+ }
56
+
35
57
  /** `_global_installs` — every host whose GLOBAL config dir carries a Geneseed manifest. */
36
58
  function globalInstalls() {
37
59
  const out = [];
@@ -112,8 +134,7 @@ export function excludeAdd(target) {
112
134
  const priorWired = (isDict(prior) ? get(prior, 'wired') : null) || {};
113
135
  const wired = {};
114
136
  if ((host === 'claude' || host === 'openclaude') && isDir(repo)) {
115
- const entry = resolvePath(path.join(cfg, 'CLAUDE.md')).split(path.sep).join('/');
116
- const added = wireClaudeExcludes(localSettings(repo, host), [entry]);
137
+ const added = wireClaudeExcludes(localSettings(repo, host), [claudeMdEntry(cfg)]);
117
138
  if (added.length) {
118
139
  wired.claude_md_excludes = added;
119
140
  } else if (get(priorWired, 'claude_md_excludes')) {
@@ -126,6 +147,8 @@ export function excludeAdd(target) {
126
147
  // own project-bypasses-global wiring, or a bailed write) — do NOT fabricate ownership,
127
148
  // or a later excludeRemove would strip wiring we never created.
128
149
  if (!added.length) messages.push(`${host}: claudeMdExcludes already present (kept)`);
150
+ const note = worktreeNote(host, cfg, repo);
151
+ if (note) messages.push(note);
129
152
  }
130
153
  if (host === 'bob' && isDir(repo)) {
131
154
  const stub = path.join(repo, '.bob', 'rules', 'geneseed.md');
@@ -249,6 +272,14 @@ export function cmdExclude(args) {
249
272
  const flag = missing.length
250
273
  ? ` (MISSING from: ${missing.join(', ')} — re-run \`geneseed exclude add\`)` : '';
251
274
  printOut(` ${rec.path} [${rec.hosts.slice().sort().join(', ')}]${flag}\n`);
275
+ for (const { host, cfg } of snap.installs) {
276
+ if (!rec.hosts.includes(host)) continue;
277
+ let note = null;
278
+ try {
279
+ note = worktreeNote(host, cfg, toPlatformPath(rec.path));
280
+ } catch { /* a broken resolver: the listing itself must still print */ }
281
+ if (note) printOut(` note: ${note}\n`);
282
+ }
252
283
  }
253
284
  return 0;
254
285
  }
package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "//": "Every field here is argued and gated in tests/unit/package_manifest.test.mjs. `files`, `bin` and `engines` each have a test that fails when reality drifts from this file; `version` mirrors harness.config.json and is gated too. Read that docblock before editing this one.",
3
3
  "name": "geneseed",
4
- "version": "4.3.0",
4
+ "version": "4.3.1",
5
5
  "description": "A portable, theme-able harness you implant once and use everywhere to grow a disciplined AI coding agent.",
6
6
  "keywords": [
7
7
  "ai",
@@ -1 +1 @@
1
- import{s as e}from"./sections-GalMS0Zv.js";import{i as t,t as n}from"./react-DRhoX0kS.js";import{t as r}from"./api-Bp5eW_6m.js";import{N as i,_ as a,k as o,q as s,y as c}from"./index-DXIa0ZG_.js";import{a as l,i as u,n as d,o as f,r as p,t as m}from"./activity-dcg5vF9j.js";import{t as h}from"./usePoll-BmR631BB.js";var g=e(t(),1),_=n();function v({s:e}){let t=p[e.status]||p.idle,n=e.files,r=e.todos,a=r&&r.total>0||e.error||e.blocked_on;return(0,_.jsxs)(`a`,{className:`card pad-md act-card`,href:`#/activity/${encodeURIComponent(e.session_id)}`,children:[(0,_.jsxs)(`div`,{className:`row between wrap gap-12`,children:[(0,_.jsxs)(`div`,{className:`row gap-10`,style:{minWidth:0},children:[(0,_.jsx)(`span`,{className:`feed-dot ${t.cls||`acc`}`,style:{width:9,height:9}}),(0,_.jsxs)(`div`,{style:{minWidth:0},children:[(0,_.jsx)(`h3`,{style:{margin:0},children:e.title||l(e.cwd)||e.session_id}),e.cwd&&(0,_.jsx)(`div`,{className:`dim mono`,style:{fontSize:12,...m},title:e.cwd,children:e.cwd})]})]}),(0,_.jsxs)(`div`,{className:`row gap-8`,style:{flexShrink:0},children:[e.model&&(0,_.jsx)(`span`,{className:`badge mono`,title:`model`,children:e.model}),e.agent&&(0,_.jsx)(`span`,{className:`badge`,children:e.agent}),(0,_.jsxs)(`span`,{className:`badge ${t.cls}`,children:[(0,_.jsx)(`span`,{className:`dot`}),t.label]}),(0,_.jsx)(o,{name:`chevron`,className:`glyph act-chev`})]})]}),e.phase&&(0,_.jsxs)(`div`,{className:`row gap-8`,style:{marginTop:10,fontSize:14},children:[(0,_.jsx)(o,{name:`activity`}),(0,_.jsx)(`span`,{style:m,children:e.phase})]}),(e.tokens>0||e.cost>0||e.turn_started_at||n&&n.count>0)&&(0,_.jsxs)(`div`,{className:`row wrap`,style:{gap:16,marginTop:12,fontSize:13,color:`var(--text-2)`},children:[e.tokens>0&&(0,_.jsxs)(`span`,{children:[f(e.tokens),` tok`]}),e.cost>0&&(0,_.jsxs)(`span`,{children:[`$`,e.cost.toFixed(2)]}),e.turn_started_at?(0,_.jsx)(`span`,{children:(0,_.jsx)(d,{startedAt:e.turn_started_at})}):null,n&&n.count>0&&(0,_.jsxs)(`span`,{children:[n.count,` file`,n.count===1?``:`s`,` `,(0,_.jsxs)(`span`,{style:{color:`var(--good)`},children:[`+`,n.additions]}),` `,(0,_.jsxs)(`span`,{style:{color:`var(--bad)`},children:[`−`,n.deletions]})]})]}),a&&(0,_.jsxs)(`div`,{className:`row between wrap gap-12`,style:{marginTop:12,paddingTop:10,borderTop:`1px solid var(--line)`},children:[r&&r.total>0?(0,_.jsxs)(`span`,{className:`row gap-8 dim`,style:{fontSize:13},children:[(0,_.jsx)(u,{done:r.done,total:r.total}),`plan `,r.done,`/`,r.total]}):(0,_.jsx)(`span`,{}),e.error?(0,_.jsx)(`span`,{className:`badge bad`,title:e.error,style:{maxWidth:300,...m},children:e.error}):e.blocked_on?(0,_.jsx)(`span`,{className:`badge bad`,title:e.blocked_on,style:{maxWidth:300,...m},children:e.blocked_on}):null]}),(0,_.jsxs)(`div`,{className:`dim mono`,style:{fontSize:11,marginTop:8},children:[`updated `,i(e.updated_at),` ago`]})]})}function y(){let[e,t]=(0,g.useState)(null),[n,i]=(0,g.useState)(``);h(e=>r.activity().then(n=>{e()&&(t(n),i(``))},t=>{e()&&i(t.message)}),2e3,[]);let o=!e||e.enabled!==!1,l=e?.activity||[],u=s(),d=async()=>{let e=!o;try{let n=await r.activityToggle(e);t(e=>({...e||{},enabled:n.enabled,activity:n.enabled&&e?.activity||[]})),i(``)}catch(e){i(e.message)}};return(0,_.jsxs)(`div`,{className:`narrow`,children:[(0,_.jsxs)(`div`,{className:`head-row mb-16`,children:[(0,_.jsxs)(`div`,{children:[(0,_.jsx)(`h1`,{className:`h`,children:`Activity`}),(0,_.jsx)(`p`,{className:`sub`,children:`Live OpenCode sessions this harness is running: what each one is doing right now. Refreshes every couple of seconds; sessions drop off when their process exits.`})]}),(0,_.jsxs)(`div`,{className:`row gap-10`,style:{alignItems:`center`,flexShrink:0},children:[(0,_.jsx)(`span`,{className:`dim mono`,style:{fontSize:12},children:o?`tracking on`:`tracking off`}),(0,_.jsx)(`div`,{className:`sw-toggle${o?` on`:``}`,role:`switch`,"aria-checked":o,"aria-label":`Toggle activity tracking`,tabIndex:0,onClick:d,onKeyDown:e=>{(e.key===`Enter`||e.key===` `)&&(e.key===` `&&e.preventDefault(),d())}})]})]}),(0,_.jsx)(a,{error:n,style:{marginBottom:12}}),e?o?l.length===0?(0,_.jsxs)(`div`,{className:`empty`,children:[(0,_.jsx)(`div`,{className:`big`,children:`No active sessions`}),`Run `,(0,_.jsx)(`code`,{children:`opencode`}),` and the sessions it spins up appear here.`]}):(0,_.jsx)(`div`,{className:`stack gap-12`,ref:u,children:l.map(e=>(0,_.jsx)(`div`,{"data-flip":e.session_id,children:(0,_.jsx)(v,{s:e})},e.session_id))}):(0,_.jsxs)(`div`,{className:`empty`,children:[(0,_.jsx)(`div`,{className:`big`,children:`Activity tracking is off`}),`The plugin isn't recording sessions. Flip the switch to turn it back on.`]}):(0,_.jsx)(c,{label:`Reading live sessions…`})]})}export{y as default};
1
+ import{s as e}from"./sections-GalMS0Zv.js";import{i as t,t as n}from"./react-DRhoX0kS.js";import{t as r}from"./api-Bp5eW_6m.js";import{N as i,_ as a,k as o,q as s,y as c}from"./index-BP4foUp0.js";import{a as l,i as u,n as d,o as f,r as p,t as m}from"./activity-dcg5vF9j.js";import{t as h}from"./usePoll-BmR631BB.js";var g=e(t(),1),_=n();function v({s:e}){let t=p[e.status]||p.idle,n=e.files,r=e.todos,a=r&&r.total>0||e.error||e.blocked_on;return(0,_.jsxs)(`a`,{className:`card pad-md act-card`,href:`#/activity/${encodeURIComponent(e.session_id)}`,children:[(0,_.jsxs)(`div`,{className:`row between wrap gap-12`,children:[(0,_.jsxs)(`div`,{className:`row gap-10`,style:{minWidth:0},children:[(0,_.jsx)(`span`,{className:`feed-dot ${t.cls||`acc`}`,style:{width:9,height:9}}),(0,_.jsxs)(`div`,{style:{minWidth:0},children:[(0,_.jsx)(`h3`,{style:{margin:0},children:e.title||l(e.cwd)||e.session_id}),e.cwd&&(0,_.jsx)(`div`,{className:`dim mono`,style:{fontSize:12,...m},title:e.cwd,children:e.cwd})]})]}),(0,_.jsxs)(`div`,{className:`row gap-8`,style:{flexShrink:0},children:[e.model&&(0,_.jsx)(`span`,{className:`badge mono`,title:`model`,children:e.model}),e.agent&&(0,_.jsx)(`span`,{className:`badge`,children:e.agent}),(0,_.jsxs)(`span`,{className:`badge ${t.cls}`,children:[(0,_.jsx)(`span`,{className:`dot`}),t.label]}),(0,_.jsx)(o,{name:`chevron`,className:`glyph act-chev`})]})]}),e.phase&&(0,_.jsxs)(`div`,{className:`row gap-8`,style:{marginTop:10,fontSize:14},children:[(0,_.jsx)(o,{name:`activity`}),(0,_.jsx)(`span`,{style:m,children:e.phase})]}),(e.tokens>0||e.cost>0||e.turn_started_at||n&&n.count>0)&&(0,_.jsxs)(`div`,{className:`row wrap`,style:{gap:16,marginTop:12,fontSize:13,color:`var(--text-2)`},children:[e.tokens>0&&(0,_.jsxs)(`span`,{children:[f(e.tokens),` tok`]}),e.cost>0&&(0,_.jsxs)(`span`,{children:[`$`,e.cost.toFixed(2)]}),e.turn_started_at?(0,_.jsx)(`span`,{children:(0,_.jsx)(d,{startedAt:e.turn_started_at})}):null,n&&n.count>0&&(0,_.jsxs)(`span`,{children:[n.count,` file`,n.count===1?``:`s`,` `,(0,_.jsxs)(`span`,{style:{color:`var(--good)`},children:[`+`,n.additions]}),` `,(0,_.jsxs)(`span`,{style:{color:`var(--bad)`},children:[`−`,n.deletions]})]})]}),a&&(0,_.jsxs)(`div`,{className:`row between wrap gap-12`,style:{marginTop:12,paddingTop:10,borderTop:`1px solid var(--line)`},children:[r&&r.total>0?(0,_.jsxs)(`span`,{className:`row gap-8 dim`,style:{fontSize:13},children:[(0,_.jsx)(u,{done:r.done,total:r.total}),`plan `,r.done,`/`,r.total]}):(0,_.jsx)(`span`,{}),e.error?(0,_.jsx)(`span`,{className:`badge bad`,title:e.error,style:{maxWidth:300,...m},children:e.error}):e.blocked_on?(0,_.jsx)(`span`,{className:`badge bad`,title:e.blocked_on,style:{maxWidth:300,...m},children:e.blocked_on}):null]}),(0,_.jsxs)(`div`,{className:`dim mono`,style:{fontSize:11,marginTop:8},children:[`updated `,i(e.updated_at),` ago`]})]})}function y(){let[e,t]=(0,g.useState)(null),[n,i]=(0,g.useState)(``);h(e=>r.activity().then(n=>{e()&&(t(n),i(``))},t=>{e()&&i(t.message)}),2e3,[]);let o=!e||e.enabled!==!1,l=e?.activity||[],u=s(),d=async()=>{let e=!o;try{let n=await r.activityToggle(e);t(e=>({...e||{},enabled:n.enabled,activity:n.enabled&&e?.activity||[]})),i(``)}catch(e){i(e.message)}};return(0,_.jsxs)(`div`,{className:`narrow`,children:[(0,_.jsxs)(`div`,{className:`head-row mb-16`,children:[(0,_.jsxs)(`div`,{children:[(0,_.jsx)(`h1`,{className:`h`,children:`Activity`}),(0,_.jsx)(`p`,{className:`sub`,children:`Live OpenCode sessions this harness is running: what each one is doing right now. Refreshes every couple of seconds; sessions drop off when their process exits.`})]}),(0,_.jsxs)(`div`,{className:`row gap-10`,style:{alignItems:`center`,flexShrink:0},children:[(0,_.jsx)(`span`,{className:`dim mono`,style:{fontSize:12},children:o?`tracking on`:`tracking off`}),(0,_.jsx)(`div`,{className:`sw-toggle${o?` on`:``}`,role:`switch`,"aria-checked":o,"aria-label":`Toggle activity tracking`,tabIndex:0,onClick:d,onKeyDown:e=>{(e.key===`Enter`||e.key===` `)&&(e.key===` `&&e.preventDefault(),d())}})]})]}),(0,_.jsx)(a,{error:n,style:{marginBottom:12}}),e?o?l.length===0?(0,_.jsxs)(`div`,{className:`empty`,children:[(0,_.jsx)(`div`,{className:`big`,children:`No active sessions`}),`Run `,(0,_.jsx)(`code`,{children:`opencode`}),` and the sessions it spins up appear here.`]}):(0,_.jsx)(`div`,{className:`stack gap-12`,ref:u,children:l.map(e=>(0,_.jsx)(`div`,{"data-flip":e.session_id,children:(0,_.jsx)(v,{s:e})},e.session_id))}):(0,_.jsxs)(`div`,{className:`empty`,children:[(0,_.jsx)(`div`,{className:`big`,children:`Activity tracking is off`}),`The plugin isn't recording sessions. Flip the switch to turn it back on.`]}):(0,_.jsx)(c,{label:`Reading live sessions…`})]})}export{y as default};
@@ -1 +1 @@
1
- import{s as e}from"./sections-GalMS0Zv.js";import{i as t,t as n}from"./react-DRhoX0kS.js";import{t as r}from"./api-Bp5eW_6m.js";import{N as i,k as a,y as o}from"./index-DXIa0ZG_.js";import{a as s,n as c,o as l,r as u,t as d}from"./activity-dcg5vF9j.js";import{t as f}from"./usePoll-BmR631BB.js";var p=e(t(),1),m=n();function h(e){return e.kind===`tool`?e.status===`error`?`bad`:e.status===`completed`?`ok`:`acc`:{retry:`warn`,error:`bad`,subtask:`acc`,text:`acc`}[e.kind]||``}function g({rec:e}){let t=e.who===`you`,n=[];t||(e.kind===`tool`&&e.ms!=null&&n.push(`${(e.ms/1e3).toFixed(1)}s`),e.kind===`step`&&(e.tokens&&n.push(`${l(e.tokens)} tok`),e.cost&&n.push(`$${e.cost.toFixed(2)}`)),e.kind===`subtask`&&e.agent&&n.unshift(e.agent));let r=!t&&(e.kind===`text`||e.kind===`thinking`||e.kind===`step`),i=t?e.text:e.label||e.snippet||e.kind;return(0,m.jsxs)(`div`,{className:`row gap-10`,style:{alignItems:`baseline`},children:[(0,m.jsx)(`span`,{className:`badge ${t?``:`acc`}`,style:{flexShrink:0,minWidth:52,justifyContent:`center`},children:t?`you`:`agent`}),(0,m.jsxs)(`div`,{style:{minWidth:0,flex:1,fontSize:13},children:[!t&&(0,m.jsx)(`span`,{className:`feed-dot ${h(e)||`acc`}`,style:{display:`inline-block`,marginRight:8,verticalAlign:`middle`}}),e.kind===`thinking`&&(0,m.jsx)(`span`,{className:`dim`,children:`thinking: `}),r?(0,m.jsx)(`span`,{className:`dim`,children:i}):t?i:(0,m.jsx)(`b`,{children:i}),e.error&&(0,m.jsxs)(`span`,{className:`dim`,children:[`: `,e.error]})]}),n.length>0&&(0,m.jsx)(`span`,{className:`dim mono`,style:{flexShrink:0,fontSize:12},children:n.join(` · `)})]})}function _({turns:e}){return!e||e.length===0?(0,m.jsx)(`div`,{className:`dim`,style:{fontSize:13},children:`No conversation captured yet.`}):(0,m.jsx)(`div`,{className:`stack gap-12`,children:e.map((e,t)=>{let n=e.role===`user`;return(0,m.jsxs)(`div`,{className:`row gap-10`,style:{alignItems:`baseline`},children:[(0,m.jsx)(`span`,{className:`badge ${n?``:`acc`}`,style:{flexShrink:0,minWidth:52,justifyContent:`center`},children:n?`you`:`agent`}),(0,m.jsx)(`div`,{style:{minWidth:0,fontSize:13,color:n?`inherit`:`var(--text-2)`},children:e.text})]},t)})})}function v({sid:e}){let[t,n]=(0,p.useState)(null),[h,v]=(0,p.useState)(``),[y,b]=(0,p.useState)(!1),[x,S]=(0,p.useState)(!1);f(t=>r.activityDetail(e).then(e=>{t()&&(n(e),v(``),b(!1))},e=>{t()&&(e.status===404?b(!0):v(e.message))}),2e3,[e]);let C=(0,m.jsxs)(`a`,{className:`btn ghost sm`,href:`#/activity`,style:{marginBottom:12,display:`inline-flex`,gap:6},children:[(0,m.jsx)(a,{name:`arrow`,style:{transform:`rotate(180deg)`}}),` Activity`]});if(y)return(0,m.jsxs)(`div`,{className:`narrow`,children:[C,(0,m.jsxs)(`div`,{className:`empty`,children:[(0,m.jsx)(`div`,{className:`big`,children:`Session ended`}),`It's no longer live. `,(0,m.jsx)(`a`,{href:`#/activity`,children:`Back to Activity`}),`.`]})]});if(!t)return(0,m.jsxs)(`div`,{className:`narrow`,children:[C,(0,m.jsx)(o,{label:`Loading session…`})]});let w=t.session,T=u[w.status]||u.idle,E=w.files,D=w.todos,O=!!(E&&E.items&&E.items.length>0),k=!!(D&&D.items&&D.items.length>0),A=t.conversation||[],j=t.timeline||[],M=[...A.filter(e=>e.role===`user`).map(e=>({who:`you`,text:e.text,t:e.t||0})),...j.map(e=>({...e,who:`agent`}))].sort((e,t)=>(e.t||0)-(t.t||0));return(0,m.jsxs)(`div`,{className:`narrow`,children:[C,h&&(0,m.jsx)(`p`,{className:`badge bad`,style:{marginBottom:12},children:h}),(0,m.jsxs)(`div`,{className:`card pad-md`,children:[(0,m.jsxs)(`div`,{className:`row between wrap gap-12`,children:[(0,m.jsxs)(`div`,{style:{minWidth:0},children:[(0,m.jsx)(`h1`,{className:`h`,style:{margin:0},children:w.title||s(w.cwd)||w.session_id}),w.cwd&&(0,m.jsx)(`div`,{className:`dim mono`,style:{fontSize:12,...d},title:w.cwd,children:w.cwd})]}),(0,m.jsxs)(`div`,{className:`row 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1
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2
2
  `)[0].slice(0,v)}`:``]}),(0,g.jsx)(`span`,{className:`b-tl-when`,children:e.duration?`${e.duration}s`:e.status})]},e.id)}),(!i||i.length===0)&&(0,g.jsxs)(`div`,{className:`b-tl-row`,children:[(0,g.jsx)(`span`,{className:`b-tl-node`}),(0,g.jsx)(`div`,{className:`b-tl-body sub`,children:`No runs yet. Trigger an action to populate this.`}),(0,g.jsx)(`span`,{className:`b-tl-when`,children:`—`})]})]})]})]})}export{T as default};