generative-bayesian-network 2.0.0-dev.0 → 2.0.0-dev.3

package/bayesian-network.d.ts

@@ -0,0 +1,44 @@
+export declare type RecordList = Record<string, any>[];
+/**
+ * BayesianNetwork is an implementation of a bayesian network capable of randomly sampling from the distribution
+ * represented by the network.
+ */
+export declare class BayesianNetwork {
+    private nodesInSamplingOrder;
+    private nodesByName;
+    constructor({ path }: {
+        path: string;
+    });
+    /**
+     * Randomly samples from the distribution represented by the bayesian network.
+     * @param inputValues Already known node values.
+     */
+    generateSample(inputValues?: Record<string, string>): Record<string, string>;
+    /**
+     * Randomly samples values from the distribution represented by the bayesian network,
+     * making sure the sample is consistent with the provided restrictions on value possibilities.
+     * Returns false if no such sample can be generated.
+     * @param valuePossibilities A dictionary of lists of possible values for nodes (if a node isn't present in the dictionary, all values are possible).
+     */
+    generateConsistentSampleWhenPossible(valuePossibilities: Record<string, string[]>): Record<string, string>;
+    /**
+     * Recursively generates a random sample consistent with the given restrictions on possible values.
+     * @param sampleSoFar Already known node values.
+     * @param valuePossibilities A dictionary of lists of possible values for nodes (if a node isn't present in the dictionary, all values are possible).
+     * @param depth Current recursion depth.
+     */
+    private recursivelyGenerateConsistentSampleWhenPossible;
+    /**
+     * Sets the conditional probability distributions of this network's nodes to match the given data.
+     * @param dataframe A Danfo.js dataframe containing the data.
+     */
+    setProbabilitiesAccordingToData(data: RecordList): void;
+    /**
+     * Saves the network definition to the specified file path to be used later.
+     * @param networkDefinitionFilePath File path where the network definition should be saved.
+     */
+    saveNetworkDefinition({ path }: {
+        path: string;
+    }): void;
+}
+//# sourceMappingURL=bayesian-network.d.ts.map

package/bayesian-network.d.ts.map

@@ -0,0 +1 @@
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package/bayesian-network.js

@@ -0,0 +1,111 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.BayesianNetwork = void 0;
+const AdmZip = require("adm-zip");
+const bayesian_node_1 = require("./bayesian-node");
+/**
+ * BayesianNetwork is an implementation of a bayesian network capable of randomly sampling from the distribution
+ * represented by the network.
+ */
+class BayesianNetwork {
+    constructor({ path }) {
+        Object.defineProperty(this, "nodesInSamplingOrder", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: []
+        });
+        Object.defineProperty(this, "nodesByName", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: {}
+        });
+        const zip = new AdmZip(path);
+        const zipEntries = zip.getEntries();
+        const networkDefinition = JSON.parse(zipEntries[0].getData().toString('utf8'));
+        this.nodesInSamplingOrder = networkDefinition.nodes.map((nodeDefinition) => new bayesian_node_1.BayesianNode(nodeDefinition));
+        this.nodesByName = this.nodesInSamplingOrder.reduce((p, node) => ({
+            ...p,
+            [node.name]: node,
+        }), {});
+    }
+    /**
+     * Randomly samples from the distribution represented by the bayesian network.
+     * @param inputValues Already known node values.
+     */
+    generateSample(inputValues = {}) {
+        const sample = inputValues;
+        for (const node of this.nodesInSamplingOrder) {
+            if (!(node.name in sample)) {
+                sample[node.name] = node.sample(sample);
+            }
+        }
+        return sample;
+    }
+    /**
+     * Randomly samples values from the distribution represented by the bayesian network,
+     * making sure the sample is consistent with the provided restrictions on value possibilities.
+     * Returns false if no such sample can be generated.
+     * @param valuePossibilities A dictionary of lists of possible values for nodes (if a node isn't present in the dictionary, all values are possible).
+     */
+    generateConsistentSampleWhenPossible(valuePossibilities) {
+        return this.recursivelyGenerateConsistentSampleWhenPossible({}, valuePossibilities, 0);
+    }
+    /**
+     * Recursively generates a random sample consistent with the given restrictions on possible values.
+     * @param sampleSoFar Already known node values.
+     * @param valuePossibilities A dictionary of lists of possible values for nodes (if a node isn't present in the dictionary, all values are possible).
+     * @param depth Current recursion depth.
+     */
+    recursivelyGenerateConsistentSampleWhenPossible(sampleSoFar, valuePossibilities, depth) {
+        const bannedValues = [];
+        const node = this.nodesInSamplingOrder[depth];
+        let sampleValue;
+        do {
+            sampleValue = node.sampleAccordingToRestrictions(sampleSoFar, valuePossibilities[node.name], bannedValues);
+            if (!sampleValue)
+                break;
+            sampleSoFar[node.name] = sampleValue;
+            if (depth + 1 < this.nodesInSamplingOrder.length) {
+                const sample = this.recursivelyGenerateConsistentSampleWhenPossible(sampleSoFar, valuePossibilities, depth + 1);
+                if (Object.keys(sample).length !== 0) {
+                    return sample;
+                }
+            }
+            else {
+                return sampleSoFar;
+            }
+            bannedValues.push(sampleValue);
+        } while (sampleValue);
+        return {};
+    }
+    /**
+     * Sets the conditional probability distributions of this network's nodes to match the given data.
+     * @param dataframe A Danfo.js dataframe containing the data.
+     */
+    setProbabilitiesAccordingToData(data) {
+        this.nodesInSamplingOrder.forEach((node) => {
+            const possibleParentValues = {};
+            for (const parentName of node.parentNames) {
+                possibleParentValues[parentName] = this.nodesByName[parentName].possibleValues;
+            }
+            node.setProbabilitiesAccordingToData(data, possibleParentValues);
+        });
+    }
+    /**
+     * Saves the network definition to the specified file path to be used later.
+     * @param networkDefinitionFilePath File path where the network definition should be saved.
+     */
+    saveNetworkDefinition({ path }) {
+        const network = {
+            nodes: this.nodesInSamplingOrder,
+        };
+        // creating archives
+        const zip = new AdmZip();
+        zip.addFile('network.json', Buffer.from(JSON.stringify(network), 'utf8'));
+        zip.writeZip(path);
+    }
+}
+exports.BayesianNetwork = BayesianNetwork;
+//# sourceMappingURL=bayesian-network.js.map

package/bayesian-network.js.map

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package/bayesian-node.d.ts

@@ -0,0 +1,76 @@
+import { RecordList } from './bayesian-network';
+/**
+ * Bayesian network node definition.
+ */
+interface NodeDefinition {
+    /**
+     * Name of this node.
+     */
+    name: string;
+    /**
+     * Name of the current node's parent nodes.
+     */
+    parentNames: string[];
+    /**
+     * Array of possible values for this node.
+     */
+    possibleValues: string[];
+    /**
+     * Conditional probabilities for the `possibleValues`, given specified ancestor values.
+     */
+    conditionalProbabilities: any;
+}
+/**
+ * BayesianNode is an implementation of a single node in a bayesian network allowing sampling from its conditional distribution.
+ */
+export declare class BayesianNode {
+    private nodeDefinition;
+    /**
+     * @param nodeDefinition Node structure and distributions definition taken from the network definition file.
+     */
+    constructor(nodeDefinition: NodeDefinition);
+    toJSON(): NodeDefinition;
+    /**
+     * Extracts unconditional probabilities of node values given the values of the parent nodes
+     * @param parentValues Parent nodes values.
+     */
+    private getProbabilitiesGivenKnownValues;
+    /**
+     * Randomly samples from the given values using the given probabilities
+     * @param possibleValues A list of values to sample from.
+     * @param totalProbabilityOfPossibleValues Sum of probabilities of possibleValues in the conditional distribution.
+     * @param probabilities A dictionary of probabilities from the conditional distribution, indexed by the values.
+     */
+    private sampleRandomValueFromPossibilities;
+    /**
+     * Randomly samples from the conditional distribution of this node given values of parents
+     * @param parentValues Values of the parent nodes.
+     */
+    sample(parentValues?: {}): string;
+    /**
+     * Randomly samples from the conditional distribution of this node given restrictions on the possible
+     * values and the values of the parents.
+     * @param parentValues Values of the parent nodes.
+     * @param valuePossibilities List of possible values for this node.
+     * @param bannedValues What values of this node are banned.
+     */
+    sampleAccordingToRestrictions(parentValues: Record<string, string>, valuePossibilities: string[], bannedValues: string[]): string | false;
+    /**
+     * Sets the conditional probability distribution for this node to match the given data.
+     * @param dataframe A Danfo.js dataframe containing the data.
+     * @param possibleParentValues A dictionary of lists of possible values for parent nodes.
+     */
+    setProbabilitiesAccordingToData(data: RecordList, possibleParentValues?: Record<string, string[]>): void;
+    /**
+     * Recursively calculates the conditional probability distribution for this node from the data.
+     * @param dataframe A Danfo.js dataframe containing the data.
+     * @param possibleParentValues A dictionary of lists of possible values for parent nodes.
+     * @param depth Depth of the current recursive call.
+     */
+    private recursivelyCalculateConditionalProbabilitiesAccordingToData;
+    get name(): string;
+    get parentNames(): string[];
+    get possibleValues(): string[];
+}
+export {};
+//# sourceMappingURL=bayesian-node.d.ts.map

package/bayesian-node.d.ts.map

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package/bayesian-node.js

@@ -0,0 +1,157 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.BayesianNode = void 0;
+/**
+* Calculates relative frequencies of values of specific attribute from the given data
+* @param dataframe A Danfo.js dataframe containing the data.
+* @param attributeName Attribute name.
+*/
+function getRelativeFrequencies(data, attributeName) {
+    const frequencies = {};
+    const totalCount = data.length;
+    data.forEach((record) => {
+        const value = record[attributeName];
+        frequencies[value] = (frequencies[value] ?? 0) + 1;
+    });
+    return Object.fromEntries(Object.entries(frequencies).map(([key, value]) => [key, value / totalCount]));
+}
+/**
+ * BayesianNode is an implementation of a single node in a bayesian network allowing sampling from its conditional distribution.
+ */
+class BayesianNode {
+    /**
+     * @param nodeDefinition Node structure and distributions definition taken from the network definition file.
+     */
+    constructor(nodeDefinition) {
+        Object.defineProperty(this, "nodeDefinition", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        this.nodeDefinition = nodeDefinition;
+    }
+    toJSON() {
+        return this.nodeDefinition;
+    }
+    /**
+     * Extracts unconditional probabilities of node values given the values of the parent nodes
+     * @param parentValues Parent nodes values.
+     */
+    getProbabilitiesGivenKnownValues(parentValues = {}) {
+        let probabilities = this.nodeDefinition.conditionalProbabilities;
+        for (const parentName of this.parentNames) {
+            const parentValue = parentValues[parentName];
+            if (parentValue in probabilities.deeper) {
+                probabilities = probabilities.deeper[parentValue];
+            }
+            else {
+                probabilities = probabilities.skip;
+            }
+        }
+        return probabilities;
+    }
+    /**
+     * Randomly samples from the given values using the given probabilities
+     * @param possibleValues A list of values to sample from.
+     * @param totalProbabilityOfPossibleValues Sum of probabilities of possibleValues in the conditional distribution.
+     * @param probabilities A dictionary of probabilities from the conditional distribution, indexed by the values.
+     */
+    sampleRandomValueFromPossibilities(possibleValues, totalProbabilityOfPossibleValues, probabilities) {
+        let chosenValue = possibleValues[0];
+        const anchor = Math.random() * totalProbabilityOfPossibleValues;
+        let cumulativeProbability = 0;
+        for (const possibleValue of possibleValues) {
+            cumulativeProbability += probabilities[possibleValue];
+            if (cumulativeProbability > anchor) {
+                chosenValue = possibleValue;
+                break;
+            }
+        }
+        return chosenValue;
+    }
+    /**
+     * Randomly samples from the conditional distribution of this node given values of parents
+     * @param parentValues Values of the parent nodes.
+     */
+    sample(parentValues = {}) {
+        const probabilities = this.getProbabilitiesGivenKnownValues(parentValues);
+        const possibleValues = Object.keys(probabilities);
+        return this.sampleRandomValueFromPossibilities(possibleValues, 1.0, probabilities);
+    }
+    /**
+     * Randomly samples from the conditional distribution of this node given restrictions on the possible
+     * values and the values of the parents.
+     * @param parentValues Values of the parent nodes.
+     * @param valuePossibilities List of possible values for this node.
+     * @param bannedValues What values of this node are banned.
+     */
+    sampleAccordingToRestrictions(parentValues, valuePossibilities, bannedValues) {
+        const probabilities = this.getProbabilitiesGivenKnownValues(parentValues);
+        let totalProbability = 0.0;
+        const validValues = [];
+        const valuesInDistribution = Object.keys(probabilities);
+        const possibleValues = valuePossibilities || valuesInDistribution;
+        for (const value of possibleValues) {
+            if (!bannedValues.includes(value) && valuesInDistribution.includes(value)) {
+                validValues.push(value);
+                totalProbability += probabilities[value];
+            }
+        }
+        if (validValues.length === 0)
+            return false;
+        return this.sampleRandomValueFromPossibilities(validValues, totalProbability, probabilities);
+    }
+    /**
+     * Sets the conditional probability distribution for this node to match the given data.
+     * @param dataframe A Danfo.js dataframe containing the data.
+     * @param possibleParentValues A dictionary of lists of possible values for parent nodes.
+     */
+    setProbabilitiesAccordingToData(data, possibleParentValues = {}) {
+        this.nodeDefinition.possibleValues = Array.from(new Set(data.map((record) => record[this.name])));
+        this.nodeDefinition.conditionalProbabilities = this.recursivelyCalculateConditionalProbabilitiesAccordingToData(data, possibleParentValues, 0);
+    }
+    /**
+     * Recursively calculates the conditional probability distribution for this node from the data.
+     * @param dataframe A Danfo.js dataframe containing the data.
+     * @param possibleParentValues A dictionary of lists of possible values for parent nodes.
+     * @param depth Depth of the current recursive call.
+     */
+    recursivelyCalculateConditionalProbabilitiesAccordingToData(data, possibleParentValues, depth) {
+        let probabilities = {
+            deeper: {},
+        };
+        if (depth < this.parentNames.length) {
+            const currentParentName = this.parentNames[depth];
+            for (const possibleValue of possibleParentValues[currentParentName]) {
+                const skip = !data.map((record) => record[currentParentName]).includes(possibleValue);
+                let filteredData = data;
+                if (!skip) {
+                    filteredData = data.filter((record) => record[currentParentName] === possibleValue);
+                }
+                const nextLevel = this.recursivelyCalculateConditionalProbabilitiesAccordingToData(filteredData, possibleParentValues, depth + 1);
+                if (!skip) {
+                    probabilities.deeper[possibleValue] = nextLevel;
+                }
+                else {
+                    probabilities.skip = nextLevel;
+                }
+            }
+        }
+        else {
+            probabilities = getRelativeFrequencies(data, this.name);
+        }
+        return probabilities;
+    }
+    get name() {
+        return this.nodeDefinition.name;
+    }
+    get parentNames() {
+        return this.nodeDefinition.parentNames;
+    }
+    get possibleValues() {
+        return this.nodeDefinition.possibleValues;
+    }
+}
+exports.BayesianNode = BayesianNode;
+//# sourceMappingURL=bayesian-node.js.map

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package/index.d.ts

@@ -0,0 +1,2 @@
+export { BayesianNetwork } from './bayesian-network';
+//# sourceMappingURL=index.d.ts.map

package/index.d.ts.map

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package/index.js.map

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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,uDAAqD;AAA5C,mHAAA,eAAe,OAAA"}

package/index.mjs

@@ -0,0 +1,4 @@
+import mod from "./index.js";
+
+export default mod;
+export const BayesianNetwork = mod.BayesianNetwork;

package/package.json

@@ -1,12 +1,9 @@
 {
     "name": "generative-bayesian-network",
-    "version": "2.0.0-dev.0",
+    "version": "2.0.0-dev.3",
     "author": {
         "name": "Apify"
     },
-    "files": [
-        "dist"
-    ],
     "main": "index.js",
     "module": "index.mjs",
     "types": "index.d.ts",
@@ -20,8 +17,7 @@
         "url": "https://github.com/apify/generative-bayesian-network/issues"
     },
     "dependencies": {
-        "adm-zip": "^0.5.9",
-        "danfojs-node": "^1.1.1"
+        "adm-zip": "^0.5.9"
     },
     "description": "An implementation of a bayesian network usable for .",
     "homepage": "https://github.com/apify/generative-bayesian-network#readme",
@@ -36,5 +32,5 @@
         "compile": "tsc -p tsconfig.build.json && gen-esm-wrapper ./index.js ./index.mjs",
         "copy": "ts-node -T ../../scripts/copy.ts"
     },
-    "gitHead": "2dd3d8c9ced1a14cb74ef16ebdd50b349bb5971b"
+    "gitHead": "e7932f0439efe4da1ef1c03af581879443db88da"
 }

package/tsconfig.build.tsbuildinfo

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