galaxy-charts 0.0.21 → 0.0.22

package/docs/package.json

@@ -1,21 +0,0 @@
-{
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-  "scripts": {
-    "docs:dev": "vitepress dev",
-    "docs:build": "vitepress build",
-    "docs:preview": "vitepress preview"
-  },
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-    "postcss": "^8.4.41",
-    "tailwindcss": "^3.4.10",
-    "vitepress": "^1.4.5"
-  },
-  "dependencies": {
-    "@heroicons/vue": "^2.1.5",
-    "naive-ui": "^2.39.0"
-  },
-  "optionalDependencies": {
-    "@rollup/rollup-linux-x64-gnu": "4.6.1"
-  }
-}

package/docs/postcss.config.js

@@ -1,6 +0,0 @@
-export default {
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-        autoprefixer: {},
-    },
-};

package/docs/public/eslint.svg

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package/docs/public/galaxy-charts.svg

@@ -1,7 +0,0 @@
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package/docs/public/javascript.svg

@@ -1,8 +0,0 @@
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package/docs/public/naive-ui.svg

@@ -1,9 +0,0 @@
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package/docs/public/next-js.svg

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package/docs/public/nuxt.svg

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package/docs/public/prettier.svg

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package/docs/public/tailwind.svg

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package/docs/public/vitest.svg

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-    <title>vitest</title>
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package/docs/public/vue.svg

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package/docs/public/vuetify.svg

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package/docs/tailwind.config.js

@@ -1,9 +0,0 @@
-/** @type {import('tailwindcss').Config} */
-export default {
-  content: ["./content/*.md"],
-  theme: {
-    extend: {},
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-  plugins: [],
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-

package/index.html

@@ -1,13 +0,0 @@
-<!doctype html>
-<html lang="en">
-  <head>
-    <meta charset="UTF-8" />
-    <link rel="icon" href="charts.svg" sizes="any" type="image/svg+xml" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Galaxy Charts</title>
-  </head>
-  <body>
-    <div id="app"></div>
-    <script type="module" src="/src/main.js"></script>
-  </body>
-</html>

package/lib/galaxy-charts.js

@@ -1,7 +0,0 @@
-export { useColumnsStore } from "@/store/columnsStore";
-
-export { GalaxyApi } from "@/api/client";
-
-import GalaxyCharts from '@/components/GalaxyCharts.vue';
-
-export { GalaxyCharts };

package/postcss.config.js

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-export default {
-    plugins: {
-        tailwindcss: {},
-        autoprefixer: {},
-    },
-};

package/prettier.config.js

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-export default {
-    tabWidth: 4,
-    printWidth: 120,
-    bracketSameLine: true,
-};

package/public/galaxy-charts.xml

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-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
-<visualization name="MY_VISUALIZATION">
-    <description>MY_DESCRIPTION</description>
-    <data_sources>
-        <data_source>
-            <model_class>HistoryDatasetAssociation</model_class>
-            <test test_attr="ext" result_type="datatype">MY_EXTENSION</test>
-            <test test_attr="datatype" result_type="datatype" type="isinstance">MY_DATATYPE</test>
-            <to_param param_attr="id">dataset_id</to_param>
-        </data_source>
-    </data_sources>
-    <params>
-        <param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
-    </params>
-    <requirements>
-        <requirement type="npm" version="MY_NPM_PACKAGE_VERSION" package="MY_NPM_PACKAGE_NAME"/>
-    </requirements>
-    <entry_point entry_point_type="script" src="dist/index.js" css="dist/index.css" />
-    <specs>
-        <type>spec_type</type>
-    </specs>
-    <settings>
-        <input>
-            <label>My Data Column Label</label>
-            <help>My Data ColumnHelp</help>
-            <name>my_data_column_name</name>
-            <type>data_column</type>
-        </input>
-        <input>
-            <label>My Float Label</label>
-            <help>My Float Help</help>
-            <name>my_float_name</name>
-            <type>float</type>
-            <value>1</value>
-            <min>0</min>
-            <max>100</max>
-        </input>
-        <input>
-            <label>Setting: Text</label>
-            <name>setting_text</name>
-            <type>textarea</type>
-            <rows>5</rows>
-            <optional>true</optional>
-        </input>
-        <input>
-            <label>Setting: Boolean</label>
-            <name>setting_boolean</name>
-            <type>boolean</type>
-            <optional>true</optional>
-            <help>Setting: Boolean Help</help>
-        </input>
-        <input>
-            <name>setting_conditional</name>
-            <label>Setting: Conditional</label>
-            <type>conditional</type>
-            <help>Setting: Conditional Help</help>
-            <test_param>
-                <name>test_condition</name>
-                <type>boolean</type>
-                <value>true</value>
-                <data>
-                    <data>
-                        <value>true</value>
-                        <label>Condition: True</label>
-                    </data>
-                    <data>
-                        <value>false</value>
-                        <label>Condition: False</label>
-                    </data>
-                </data>
-            </test_param>
-            <cases>
-                <cases>
-                    <value>true</value>
-                    <inputs>
-                        <inputs>
-                            <label>Case True: Input</label>
-                            <name>case_true</name>
-                            <type>textarea</type>
-                            <value>my value</value>
-                        </inputs>
-                    </inputs>
-                </cases>
-                <cases>
-                    <value>false</value>
-                    <inputs>
-                        <inputs>
-                            <label>Case False: Input</label>
-                            <name>case_false</name>
-                            <type>text</type>
-                        </inputs>
-                    </inputs>
-                </cases>
-            </cases>
-        </input>
-    </settings>
-    <tracks>
-        <input>
-            <label>Track: Data</label>
-            <name>track_data</name>
-            <type>data</type>
-            <extension>tabular</extension>
-        </input>
-        <input>
-            <label>Track: Data (Optional)</label>
-            <name>track_data_required</name>
-            <type>data</type>
-            <extension>bed</extension>
-            <optional>true</optional>
-        </input>
-        <input>
-            <label>Track: Color</label>
-            <name>track_color</name>
-            <type>color</type>
-        </input>
-        <input>
-            <label>Track: Text</label>
-            <name>track_text</name>
-            <type>text</type>
-            <placeholder>Placeholder</placeholder>
-            <value>Text</value>
-        </input>
-        <input>
-            <name>track_column_0</name>
-            <label>Track: Column (Auto, Text)</label>
-            <type>data_column</type>
-            <is_auto>true</is_auto>
-            <is_text>true</is_text>
-        </input>
-        <input>
-            <name>track_column_1</name>
-            <label>Track: Column (Number)</label>
-            <type>data_column</type>
-            <is_number>true</is_number>
-        </input>
-    </tracks>
-</visualization>

package/src/App.vue

@@ -1,23 +0,0 @@
-<script setup lang="ts">
-import { GalaxyCharts } from "galaxy-charts";
-import Plugin from "./Plugin.vue";
-
-defineProps<{
-    credentials?: RequestCredentials;
-    xml: string;
-}>();
-</script>
-
-<template>
-    <GalaxyCharts :credentials="credentials" :xml="xml">
-        <template #default="{ datasetId, datasetUrl, root, settings, specs, tracks }">
-            <Plugin
-                :dataset-id="datasetId"
-                :dataset-url="datasetUrl"
-                :root="root"
-                :settings="settings"
-                :specs="specs"
-                :tracks="tracks" />
-        </template>
-    </GalaxyCharts>
-</template>

package/src/Plugin.vue

@@ -1,37 +0,0 @@
-<script setup lang="ts">
-import { onMounted, ref, watch } from "vue";
-
-const props = defineProps<{
-    datasetId: string;
-    datasetUrl: string;
-    root: string;
-    settings: object;
-    specs: object;
-    tracks: Array<object>;
-}>();
-
-const viewport = ref(null);
-
-function render() {
-    /** Place your render function here! */
-}
-
-onMounted(() => {
-    render();
-});
-
-watch(
-    () => props,
-    () => render(),
-    { deep: true },
-);
-</script>
-
-<template>
-    <div ref="viewport" class="h-screen p-4 overflow-auto">
-        <div class="bg-gray-600 text-white rounded-lg p-2">
-            <pre class="p-2">Settings: {{ settings }}</pre>
-            <pre class="p-2">Tracks: {{ tracks }}</pre>
-        </div>
-    </div>
-</template>

package/src/api/client.ts

@@ -1,46 +0,0 @@
-import { rethrowSimple } from "@/utilities/simpleError";
-import { useConfigStore } from "@/store/configStore";
-
-async function fetchApi(path: string, options: RequestInit): Promise<{ data: any; response: Response }> {
-    const configStore = useConfigStore();
-    const routedPath = `${configStore.getRoot()}${path.substring(1)}`;
-    try {
-        const response = await fetch(routedPath, {
-            credentials: configStore.getCredentials(),
-            headers: { "Content-Type": "application/json" },
-            ...options,
-        });
-        const data = await response.json();
-        return { data, response };
-    } catch (err) {
-        rethrowSimple(err);
-    }
-}
-
-export function GalaxyApi() {
-    async function GET(path: string): Promise<{ data: any; response: Response }> {
-        return fetchApi(path, {
-            method: "GET",
-        });
-    }
-
-    async function POST(path: string, options: any): Promise<{ data: any; response: Response }> {
-        return fetchApi(path, {
-            body: JSON.stringify(options),
-            method: "POST",
-        });
-    }
-
-    async function PUT(path: string, options: any): Promise<{ data: any; response: Response }> {
-        return fetchApi(path, {
-            body: JSON.stringify(options),
-            method: "PUT",
-        });
-    }
-
-    return {
-        GET,
-        POST,
-        PUT,
-    };
-}

package/src/api/datasets.ts

@@ -1,34 +0,0 @@
-import { GalaxyApi } from "@/api/client";
-
-export async function datasetsGetColumns(datasetId: string, columnList: string[]): Promise<any[][] | undefined> {
-    try {
-        const params = new URLSearchParams({
-            data_type: "raw_data",
-            provider: "dataset-column",
-            indeces: columnList.toString(),
-        }).toString();
-
-        const { data } = await GalaxyApi().GET(`/api/datasets/${datasetId}?${params}`);
-        const columnLength = columnList.length;
-        const results: any[][] = new Array(columnLength).fill(null).map(() => []);
-
-        for (const row of data) {
-            for (const j in row) {
-                const index = Number(j);
-                const value = row[j];
-                if (value !== undefined && value != 2147483647 && index < columnLength) {
-                    results[index].push(value);
-                }
-            }
-        }
-
-        return results;
-    } catch (err) {
-        console.error(err);
-        return undefined;
-    }
-}
-
-export function datasetsGetUrl(datasetId: string): string {
-    return `/api/datasets/${datasetId}/display`;
-}