flavor-code 1.4.0-beta.1 → 1.4.0-beta.3

package/dist/desktop-renderer/assets/{interactive-terminal-C4o7MNPO.js → interactive-terminal-j52Ty3QO.js}

@@ -1,4 +1,4 @@
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this.bg&268435456}updateExtended(){this.extended.isEmpty()?this.bg&=-268435457:this.bg|=268435456}getUnderlineColor(){if(this.bg&268435456&&~this.extended.underlineColor)switch(this.extended.underlineColor&50331648){case 16777216:case 33554432:return this.extended.underlineColor&255;case 50331648:return this.extended.underlineColor&16777215;default:return this.getFgColor()}return this.getFgColor()}getUnderlineColorMode(){return this.bg&268435456&&~this.extended.underlineColor?this.extended.underlineColor&50331648:this.getFgColorMode()}isUnderlineColorRGB(){return this.bg&268435456&&~this.extended.underlineColor?(this.extended.underlineColor&50331648)==50331648:this.isFgRGB()}isUnderlineColorPalette(){return this.bg&268435456&&~this.extended.underlineColor?(this.extended.underlineColor&50331648)==16777216||(this.extended.underlineColor&50331648)==33554432:this.isFgPalette()}isUnderlineColorDefault(){return this.bg&268435456&&~this.extended.underlineColor?(this.extended.underlineColor&50331648)==0:this.isFgDefault()}getUnderlineStyle(){return this.fg&268435456?this.bg&268435456?this.extended.underlineStyle:1:0}getUnderlineVariantOffset(){return this.extended.underlineVariantOffset}},b=class e{constructor(e=0,t=0){this._ext=0,this._urlId=0,this._ext=e,this._urlId=t}get ext(){return this._urlId?this._ext&-469762049|this.underlineStyle<<26:this._ext}set ext(e){this._ext=e}get underlineStyle(){return this._urlId?5:(this._ext&469762048)>>26}set underlineStyle(e){this._ext&=-469762049,this._ext|=e<<26&469762048}get underlineColor(){return this._ext&67108863}set underlineColor(e){this._ext&=-67108864,this._ext|=e&67108863}get urlId(){return this._urlId}set urlId(e){this._urlId=e}get underlineVariantOffset(){let e=(this._ext&3758096384)>>29;return e<0?e^4294967288:e}set underlineVariantOffset(e){this._ext&=536870911,this._ext|=e<<29&3758096384}clone(){return new e(this._ext,this._urlId)}isEmpty(){return this.underlineStyle===0&&this._urlId===0}},x=class e extends ue{constructor(){super(...arguments),this.content=0,this.fg=0,this.bg=0,this.extended=new b,this.combinedData=``}static fromCharData(t){let n=new e;return n.setFromCharData(t),n}isCombined(){return this.content&2097152}getWidth(){return this.content>>22}getChars(){return this.content&2097152?this.combinedData:this.content&2097151?v(this.content&2097151):``}getCode(){return this.isCombined()?this.combinedData.charCodeAt(this.combinedData.length-1):this.content&2097151}setFromCharData(e){this.fg=e[0],this.bg=0;let t=!1;if(e[1].length>2)t=!0;else if(e[1].length===2){let n=e[1].charCodeAt(0);if(55296<=n&&n<=56319){let r=e[1].charCodeAt(1);56320<=r&&r<=57343?this.content=(n-55296)*1024+r-56320+65536|e[2]<<22:t=!0}else t=!0}else this.content=e[1].charCodeAt(0)|e[2]<<22;t&&(this.combinedData=e[1],this.content=2097152|e[2]<<22)}getAsCharData(){return[this.fg,this.getChars(),this.getWidth(),this.getCode()]}},de=`di$target`,fe=`di$dependencies`,S=new Map;function pe(e){return e[fe]||[]}function C(e){if(S.has(e))return S.get(e);let t=function(e,n,r){if(arguments.length!==3)throw Error(`@IServiceName-decorator can only be used to decorate a parameter`);me(t,e,r)};return t._id=e,S.set(e,t),t}function me(e,t,n){t[de]===t?t[fe].push({id:e,index:n}):(t[fe]=[{id:e,index:n}],t[de]=t)}var w=C(`BufferService`),he=C(`CoreMouseService`),T=C(`CoreService`),ge=C(`CharsetService`),E=C(`InstantiationService`),_e=C(`LogService`),D=C(`OptionsService`),ve=C(`OscLinkService`),ye=C(`UnicodeService`),be=C(`DecorationService`),xe=class{constructor(e,t,n){this._bufferService=e,this._optionsService=t,this._oscLinkService=n}provideLinks(e,t){let n=this._bufferService.buffer.lines.get(e-1);if(!n){t(void 0);return}let r=[],i=this._optionsService.rawOptions.linkHandler,a=new x,o=n.getTrimmedLength(),s=-1,c=-1,l=!1;for(let t=0;t<o;t++)if(!(c===-1&&!n.hasContent(t))){if(n.loadCell(t,a),a.hasExtendedAttrs()&&a.extended.urlId)if(c===-1){c=t,s=a.extended.urlId;continue}else l=a.extended.urlId!==s;else c!==-1&&(l=!0);if(l||c!==-1&&t===o-1){let n=this._oscLinkService.getLinkData(s)?.uri;if(n){let a={start:{x:c+1,y:e},end:{x:t+ +(!l&&t===o-1),y:e}},s=!1;if(!i?.allowNonHttpProtocols)try{let e=new URL(n);[`http:`,`https:`].includes(e.protocol)||(s=!0)}catch{s=!0}s||r.push({text:n,range:a,activate:(e,t)=>i?i.activate(e,t,a):Se(e,t),hover:(e,t)=>i?.hover?.(e,t,a),leave:(e,t)=>i?.leave?.(e,t,a)})}l=!1,a.hasExtendedAttrs()&&a.extended.urlId?(c=t,s=a.extended.urlId):(c=-1,s=-1)}}t(r)}};xe=d([f(0,w),f(1,D),f(2,ve)],xe);function Se(e,t){if(confirm(`Do you want to navigate to ${t}?
 
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package/dist/desktop-renderer/index.html

@@ -6,7 +6,7 @@
     <meta name="color-scheme" content="light" />
     <meta http-equiv="Content-Security-Policy" content="default-src 'self'; script-src 'self'; style-src 'self' 'unsafe-inline'; img-src 'self' data:; connect-src 'self' http://127.0.0.1:* http://localhost:* http://[::1]:* ws://127.0.0.1:* ws://localhost:* ws://[::1]:*; frame-src http://127.0.0.1:* http://localhost:* http://[::1]:*" />
     <title>Flavor Code</title>
-    <script type="module" crossorigin src="./assets/index-CqRIr-hz.js"></script>
+    <script type="module" crossorigin src="./assets/index-CYd5JkTR.js"></script>
     <link rel="stylesheet" crossorigin href="./assets/index-Bk6FYhyh.css">
   </head>
   <body>

package/dist/git/service.d.ts

@@ -4,8 +4,8 @@ export interface GitResult {
     stderr: string;
     code: number;
 }
-export declare function git(workspace: string, args: readonly string[], timeoutMs?: number): Promise<GitResult>;
-export declare function isGitRepository(workspace: string): Promise<boolean>;
+export declare function git(workspace: string, args: readonly string[], timeoutMs?: number, signal?: AbortSignal): Promise<GitResult>;
+export declare function isGitRepository(workspace: string, signal?: AbortSignal): Promise<boolean>;
 export interface GitChangeSummary {
     branch: string;
     head: string;
@@ -38,6 +38,6 @@ export interface GitHistoryEntry {
     subject: string;
 }
 /** Commit history for the repository, or for one file when a path is given. */
-export declare function fileHistory(workspace: string, path: string | undefined, limit: number): Promise<GitHistoryEntry[]>;
+export declare function fileHistory(workspace: string, path: string | undefined, limit: number, signal?: AbortSignal): Promise<GitHistoryEntry[]>;
 /** Short branch@sha marker used to tag session checkpoints with git state. */
 export declare function gitMarker(workspace: string): Promise<string | undefined>;

package/dist/git/tools.d.ts

@@ -2,7 +2,7 @@ import { z } from "zod";
 import type { ToolDefinition } from "../tools/types.js";
 declare const GitHistoryInput: z.ZodObject<{
     path: z.ZodOptional<z.ZodString>;
-    limit: z.ZodOptional<z.ZodNumber>;
+    limit: z.ZodOptional<z.ZodCoercedNumber<unknown>>;
 }, z.core.$strip>;
 export type GitHistoryInput = z.infer<typeof GitHistoryInput>;
 export declare function createGitHistoryTool(workspace: string): ToolDefinition<GitHistoryInput, string>;

package/dist/harness/local.d.ts

@@ -21,6 +21,8 @@ export interface LocalHarnessOptions {
     approve?: ApprovalCallback;
     maxIterationsMain?: number;
     maxIterationsSubagent?: number;
+    softLimitFactor?: number;
+    extendIterations?: number;
     hasActiveProgress?(): boolean;
     hallucinationGuard?: HallucinationGuard;
     /** When true, non-destructive tools skip the approval callback. Destructive tools still require confirmation. */

package/dist/init/project.d.ts

@@ -24,10 +24,4 @@ export interface InitResult {
     facts: ProjectFacts;
 }
 export declare function inspectProject(cwd: string): Promise<ProjectFacts>;
-/**
- * Copy the astgraph plugin (runtime + vendored WASM grammars + zod) into the
- * workspace's project plugin directory. An existing installation is never
- * overwritten.
- */
-export declare function copyAstgraphPlugin(cwd: string): Promise<void>;
 export declare function initializeFlavor(cwd: string): Promise<InitResult>;

package/dist/jobs/registry.d.ts

@@ -43,7 +43,7 @@ export declare class JobRegistry {
     list(owner?: string): readonly JobSnapshot[];
     read(id: string, owner: string, cursor?: number): JobReadResult;
     wait(id: string, owner: string, signal?: AbortSignal): Promise<JobSnapshot>;
-    kill(id: string, owner: string): void;
+    kill(id: string, owner: string): void | Promise<void>;
     subscribe(listener: (jobs: readonly JobSnapshot[]) => void): () => void;
     dispose(): Promise<void>;
 }

package/dist/{load-V2UIYYQI.js → load-SLSL3IWR.js}

@@ -7,7 +7,7 @@ import {
   setProjectMcpServerDisabled,
   setProjectProviderConfig,
   setProjectSkillDisabled
-} from "./chunk-URUVFECH.js";
+} from "./chunk-KBHWS7M6.js";
 import "./chunk-S32JRDZK.js";
 export {
   loadConfig,

package/dist/sdk/index.js

@@ -4,7 +4,7 @@ import {
   FlavorRpcServer,
   TraceRecordSchema,
   TraceRecorder
-} from "../chunk-FOTMP4ZS.js";
+} from "../chunk-3BHKW5A7.js";
 import {
   AgentMessageQueue,
   DockerExecutionEnvironment,
@@ -13,10 +13,10 @@ import {
   WorkspaceCheckpointStore,
   buildDockerInvocation,
   createProductionRuntime
-} from "../chunk-6MNOZ2TX.js";
+} from "../chunk-NIKCPCJG.js";
 import "../chunk-CIVPKHF4.js";
-import "../chunk-URUVFECH.js";
-import "../chunk-3WCDZ6ZL.js";
+import "../chunk-KBHWS7M6.js";
+import "../chunk-ZJCAQXA7.js";
 import "../chunk-S32JRDZK.js";
 
 // src/trace/replay.ts

package/dist/tools/lsp.d.ts

@@ -14,10 +14,13 @@ interface LspLocation {
 }
 interface LspHover {
     contents: {
-        kind: string;
+        kind?: string;
         language?: string;
         value: string;
-    } | string;
+    } | string | Array<string | {
+        language: string;
+        value: string;
+    }>;
     range?: {
         start: {
             line: number;
@@ -52,10 +55,10 @@ interface LanguageServerConfig {
     rootFiles: string[];
 }
 export interface LspManager {
-    findReferences(uri: string, line: number, character: number): Promise<LspLocation[]>;
-    hover(uri: string, line: number, character: number): Promise<LspHover | null>;
-    diagnostics(uri: string): Promise<LspDiagnostic[]>;
-    dispose(): void;
+    findReferences(uri: string, line: number, character: number, signal?: AbortSignal): Promise<LspLocation[]>;
+    hover(uri: string, line: number, character: number, signal?: AbortSignal): Promise<LspHover | null>;
+    diagnostics(uri: string, signal?: AbortSignal): Promise<LspDiagnostic[]>;
+    dispose(): void | Promise<void>;
 }
 export declare class RealLspManager implements LspManager {
     #private;
@@ -64,10 +67,10 @@ export declare class RealLspManager implements LspManager {
         serverConfigs?: LanguageServerConfig[];
         onStatus?: ((message: string) => void) | undefined;
     });
-    dispose(): void;
-    findReferences(uri: string, line: number, character: number): Promise<LspLocation[]>;
-    hover(uri: string, line: number, character: number): Promise<LspHover | null>;
-    diagnostics(uri: string): Promise<LspDiagnostic[]>;
+    dispose(): Promise<void>;
+    findReferences(uri: string, line: number, character: number, signal?: AbortSignal): Promise<LspLocation[]>;
+    hover(uri: string, line: number, character: number, signal?: AbortSignal): Promise<LspHover | null>;
+    diagnostics(uri: string, signal?: AbortSignal): Promise<LspDiagnostic[]>;
 }
 export interface LspToolOptions {
     manager?: LspManager;

package/dist/tools/runtime.d.ts

@@ -36,7 +36,8 @@ export interface ToolOutputOverflow {
     preview: string;
     originalChars: number;
     previewChars: number;
-    savedTo: string;
+    savedTo?: string;
+    storageError?: string;
 }
 export declare const DEFAULT_TOOL_OUTPUT_LIMITS: Readonly<ToolOutputLimits>;
 export type ToolInputValidation = {

package/dist/tools/search.d.ts

@@ -8,6 +8,7 @@ declare const GlobInput: z.ZodObject<{
 }, z.core.$strip>;
 declare const GrepInput: z.ZodObject<{
     pattern: z.ZodString;
+    fixedStrings: z.ZodOptional<z.ZodNullable<z.ZodPreprocess<z.ZodBoolean>>>;
     path: z.ZodOptional<z.ZodNullable<z.ZodString>>;
     glob: z.ZodOptional<z.ZodNullable<z.ZodString>>;
     fileType: z.ZodOptional<z.ZodNullable<z.ZodEnum<{

package/dist/tools/types.d.ts

@@ -77,7 +77,7 @@ export interface JobToolPresentation {
 }
 export type ToolPresentation = ChangeSetPresentation | FileChangePresentation | GenericToolPresentation | TerminalToolPresentation | WebToolPresentation | JobToolPresentation;
 export declare function withToolPresentation<T extends object>(output: T, presentation: ToolPresentation): T;
-export declare function getToolPresentation(output: unknown): FileChangePresentation | undefined;
+export declare function getToolPresentation(output: unknown): ToolPresentation | undefined;
 export interface ToolDefinition<T, O = unknown> {
     name: string;
     description: string;

package/dist/utils/abort.d.ts

@@ -0,0 +1,4 @@
+/** Wait without retaining an abort listener after the operation settles.
+ * The operation must still receive the signal when it supports cancellation.
+ */
+export declare function waitWithSignal<T>(operation: Promise<T>, signal?: AbortSignal): Promise<T>;

package/dist/utils/execFileNoThrow.d.ts

@@ -4,6 +4,7 @@ export interface ExecFileNoThrowOptions {
     env?: NodeJS.ProcessEnv;
     stdin?: "ignore" | "inherit" | "pipe";
     input?: string;
+    signal?: AbortSignal;
 }
 export declare function execFileNoThrow(file: string, args: string[], options?: ExecFileNoThrowOptions): Promise<{
     stdout: string;

package/dist/utils/process-tree.d.ts

@@ -0,0 +1,2 @@
+/** POSIX callers must spawn the root in its own process group (detached=true). */
+export declare function terminateProcessTree(pid: number | undefined): Promise<void>;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "flavor-code",
-  "version": "1.4.0-beta.1",
+  "version": "1.4.0-beta.3",
   "author": "YachuanWzh",
   "type": "module",
   "publishConfig": {
@@ -31,7 +31,7 @@
   "scripts": {
     "build": "npm run build:icons && npm run build:cli && npm run build:desktop",
     "build:icons": "node scripts/build-icons.mjs",
-    "build:cli": "tsup && tsc -p tsconfig.sdk.json && node -e \"require('fs').cpSync('src/init/astgraph','dist/astgraph',{recursive:true})\"",
+    "build:cli": "tsup && tsc -p tsconfig.sdk.json",
     "build:desktop": "npm run build:desktop:main && npm run build:desktop:renderer",
     "build:desktop:main": "tsup --config tsup.desktop.config.ts",
     "build:desktop:renderer": "vite build --config vite.desktop.config.ts",

package//346/212/200/346/234/257/346/226/271/346/241/210/346/212/245/345/221/212.md

@@ -405,7 +405,7 @@ sequenceDiagram
     U->>CLI: 输入 prompt
     CLI->>L: submit(prompt, signal)
 
-    loop 每轮迭代（最多 80 轮）
+    loop 每轮迭代（最多 300 轮）
         L->>C: prepareForModelCall()
         C->>C: 微压缩（清理旧工具输出）
         alt 仍超阈值
@@ -560,13 +560,13 @@ FlavorConfigSchema = {
   },
   language: "zh-CN",                   // BCP47 语言标签
   maxIterations: {
-    main: 10-500,                      // 主 Agent 迭代上限（默认 80）
-    subagent: 10-200,                  // 子 Agent 迭代上限（默认 40）
+    main: 10-500,                      // 主 Agent 迭代上限（默认 300）
+    subagent: 10-200,                  // 子 Agent 迭代上限（默认 100）
     softLimitFactor: 0.8,              // 软限制比例
-    extendBy: 20                       // 扩展步数
+    extendBy: 50                       // 扩展步数
   },
   loop: {
-    maxCycles: 20,                     // 每次用户授权增加的 cycle 数
+    maxCycles: 100,                    // 每次用户授权增加的 cycle 数
     maxTokens: 500_000,                // 每次用户授权增加的模型 token 数
     isolation: "auto"                  // 只读用当前目录；改代码自动用 worktree
   },
@@ -749,8 +749,8 @@ flowchart TD
 maxTokens = 5,000,000
 5,000,000 → 确认 → 10,000,000 → 确认 → 15,000,000 → ...
 
-maxCycles = 20
-20 → 确认 → 40 → 确认 → 60 → ...
+maxCycles = 100
+100 → 确认 → 200 → 确认 → 300 → ...
 ```
 
 token 统计包括 worker 的所有模型调用以及上下文压缩模型调用；本地 Shell 验证命令不计 token。用户拒绝产生 `budget_exhausted`；非交互模式无法确认时产生 `needs_human`。预算批准记录维度、旧/新 checkpoint、当时累计用量和时间戳。

package/dist/astgraph/db.mjs

@@ -1,237 +0,0 @@
-// astgraph graph database — SQLite-backed node/edge graph (codegraph-inspired).
-// Uses node:sqlite with WAL mode so concurrent readers never block on a writer.
-
-import { mkdirSync } from "node:fs";
-import { dirname } from "node:path";
-import { DatabaseSync } from "node:sqlite";
-
-const SCHEMA = `
-CREATE TABLE IF NOT EXISTS schema_versions (
-    version INTEGER PRIMARY KEY,
-    applied_at INTEGER NOT NULL,
-    description TEXT
-);
-
-CREATE TABLE IF NOT EXISTS files (
-    path TEXT PRIMARY KEY,
-    content_hash TEXT NOT NULL,
-    language TEXT NOT NULL,
-    size INTEGER NOT NULL,
-    modified_at INTEGER NOT NULL DEFAULT 0,
-    indexed_at INTEGER NOT NULL DEFAULT 0,
-    node_count INTEGER NOT NULL DEFAULT 0
-);
-
-CREATE TABLE IF NOT EXISTS nodes (
-    id TEXT PRIMARY KEY,
-    kind TEXT NOT NULL,
-    name TEXT NOT NULL,
-    qualified_name TEXT NOT NULL,
-    file_path TEXT NOT NULL,
-    language TEXT NOT NULL,
-    start_line INTEGER NOT NULL,
-    end_line INTEGER NOT NULL,
-    signature TEXT,
-    docstring TEXT,
-    is_exported INTEGER NOT NULL DEFAULT 0,
-    is_async INTEGER NOT NULL DEFAULT 0
-);
-
-CREATE TABLE IF NOT EXISTS edges (
-    id INTEGER PRIMARY KEY AUTOINCREMENT,
-    source TEXT NOT NULL,
-    target TEXT NOT NULL,
-    kind TEXT NOT NULL,
-    line INTEGER,
-    col INTEGER,
-    FOREIGN KEY (source) REFERENCES nodes(id) ON DELETE CASCADE,
-    FOREIGN KEY (target) REFERENCES nodes(id) ON DELETE CASCADE
-);
-
-CREATE TABLE IF NOT EXISTS unresolved_refs (
-    id INTEGER PRIMARY KEY AUTOINCREMENT,
-    from_node_id TEXT,
-    reference_name TEXT NOT NULL,
-    reference_kind TEXT NOT NULL,
-    line INTEGER NOT NULL,
-    col INTEGER NOT NULL,
-    file_path TEXT NOT NULL DEFAULT '',
-    module_specifier TEXT,
-    status TEXT NOT NULL DEFAULT 'pending',
-    FOREIGN KEY (from_node_id) REFERENCES nodes(id) ON DELETE CASCADE
-);
-
-CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes(name);
-CREATE INDEX IF NOT EXISTS idx_nodes_lower_name ON nodes(lower(name));
-CREATE INDEX IF NOT EXISTS idx_nodes_file_path ON nodes(file_path);
-CREATE INDEX IF NOT EXISTS idx_nodes_kind ON nodes(kind);
-CREATE INDEX IF NOT EXISTS idx_edges_source_kind ON edges(source, kind);
-CREATE INDEX IF NOT EXISTS idx_edges_target_kind ON edges(target, kind);
-CREATE UNIQUE INDEX IF NOT EXISTS idx_edges_identity
-  ON edges(source, target, kind, IFNULL(line, -1), IFNULL(col, -1));
-CREATE INDEX IF NOT EXISTS idx_unresolved_from ON unresolved_refs(from_node_id);
-CREATE INDEX IF NOT EXISTS idx_unresolved_name ON unresolved_refs(reference_name);
-
-CREATE VIRTUAL TABLE IF NOT EXISTS nodes_fts USING fts5(
-    name,
-    qualified_name,
-    signature,
-    docstring,
-    content='nodes',
-    content_rowid='rowid'
-);
-
-CREATE TRIGGER IF NOT EXISTS nodes_ai AFTER INSERT ON nodes BEGIN
-    INSERT INTO nodes_fts(rowid, name, qualified_name, signature, docstring)
-    VALUES (NEW.rowid, NEW.name, NEW.qualified_name, NEW.signature, NEW.docstring);
-END;
-
-CREATE TRIGGER IF NOT EXISTS nodes_ad AFTER DELETE ON nodes BEGIN
-    INSERT INTO nodes_fts(nodes_fts, rowid, name, qualified_name, signature, docstring)
-    VALUES ('delete', OLD.rowid, OLD.name, OLD.qualified_name, OLD.signature, OLD.docstring);
-END;
-
-CREATE TRIGGER IF NOT EXISTS nodes_au AFTER UPDATE ON nodes BEGIN
-    INSERT INTO nodes_fts(nodes_fts, rowid, name, qualified_name, signature, docstring)
-    VALUES ('delete', OLD.rowid, OLD.name, OLD.qualified_name, OLD.signature, OLD.docstring);
-    INSERT INTO nodes_fts(rowid, name, qualified_name, signature, docstring)
-    VALUES (NEW.rowid, NEW.name, NEW.qualified_name, NEW.signature, NEW.docstring);
-END;
-
-CREATE TABLE IF NOT EXISTS project_metadata (
-    key TEXT PRIMARY KEY,
-    value TEXT NOT NULL,
-    updated_at INTEGER NOT NULL
-);
-`;
-
-/** Open (creating when absent) the graph database at `path`. Returns a DatabaseSync. */
-export function openDb(path) {
-  if (path !== ":memory:") mkdirSync(dirname(path), { recursive: true });
-  const db = new DatabaseSync(path);
-  db.exec("PRAGMA journal_mode = WAL");
-  db.exec("PRAGMA foreign_keys = ON");
-  db.exec("PRAGMA synchronous = NORMAL");
-  db.exec(SCHEMA);
-  const version = db.prepare("SELECT COUNT(*) AS count FROM schema_versions").get();
-  if (version.count === 0) {
-    db.prepare("INSERT INTO schema_versions(version, applied_at, description) VALUES (?, ?, ?)")
-      .run(1, Date.now(), "Initial astgraph schema");
-  }
-  return db;
-}
-
-/** Insert or replace the tracking record for one source file. */
-export function upsertFileRecord(db, record) {
-  db.prepare(`
-    INSERT INTO files(path, content_hash, language, size, modified_at, indexed_at, node_count)
-    VALUES (?, ?, ?, ?, ?, ?, ?)
-    ON CONFLICT(path) DO UPDATE SET
-      content_hash = excluded.content_hash,
-      language = excluded.language,
-      size = excluded.size,
-      modified_at = excluded.modified_at,
-      indexed_at = excluded.indexed_at,
-      node_count = excluded.node_count
-  `).run(
-    record.path, record.contentHash, record.language, record.size,
-    record.modifiedAt ?? Date.now(), record.indexedAt ?? Date.now(), record.nodeCount ?? 0,
-  );
-}
-
-/** Read the tracking record for one source file, or undefined when absent. */
-export function getFileRecord(db, path) {
-  const row = db.prepare("SELECT * FROM files WHERE path = ?").get(path);
-  if (row === undefined) return undefined;
-  return {
-    path: row.path, contentHash: row.content_hash, language: row.language,
-    size: row.size, modifiedAt: row.modified_at, indexedAt: row.indexed_at,
-    nodeCount: row.node_count,
-  };
-}
-
-/** Delete a file record; nodes cascade (and with them edges + refs + FTS rows). */
-export function deleteFileRecord(db, path) {
-  db.prepare("DELETE FROM nodes WHERE file_path = ?").run(path);
-  db.prepare("DELETE FROM files WHERE path = ?").run(path);
-}
-
-/**
- * Replace every node belonging to a file. Runs inside one transaction; the FTS
- * triggers keep nodes_fts in sync.
- */
-export function replaceNodes(db, filePath, nodes) {
-  const insert = db.prepare(`
-    INSERT OR REPLACE INTO nodes(
-      id, kind, name, qualified_name, file_path, language,
-      start_line, end_line, signature, docstring, is_exported, is_async
-    ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
-  `);
-  const clear = db.prepare("DELETE FROM nodes WHERE file_path = ?");
-  db.exec("BEGIN");
-  try {
-    clear.run(filePath);
-    for (const node of nodes) {
-      insert.run(
-        node.id, node.kind, node.name, node.qualifiedName, node.filePath, node.language,
-        node.startLine, node.endLine, node.signature ?? null, node.docstring ?? null,
-        node.isExported ? 1 : 0, node.isAsync ? 1 : 0,
-      );
-    }
-    db.exec("COMMIT");
-  } catch (error) {
-    db.exec("ROLLBACK");
-    throw error;
-  }
-}
-
-/** Insert one edge; duplicate (source, target, kind, line, col) rows are ignored. */
-export function insertEdge(db, edge) {
-  db.prepare(`
-    INSERT OR IGNORE INTO edges(source, target, kind, line, col) VALUES (?, ?, ?, ?, ?)
-  `).run(edge.source, edge.target, edge.kind, edge.line ?? null, edge.col ?? null);
-}
-
-/** Delete every edge whose source OR target belongs to a file. */
-export function deleteEdgesForFile(db, filePath) {
-  db.prepare(`
-    DELETE FROM edges WHERE source IN (SELECT id FROM nodes WHERE file_path = ?)
-       OR target IN (SELECT id FROM nodes WHERE file_path = ?)
-  `).run(filePath, filePath);
-}
-
-/** Insert one unresolved cross-file reference (status 'pending'). */
-export function insertUnresolvedRef(db, ref) {
-  db.prepare(`
-    INSERT INTO unresolved_refs(from_node_id, reference_name, reference_kind, line, col, file_path, module_specifier, status)
-    VALUES (?, ?, ?, ?, ?, ?, ?, 'pending')
-  `).run(ref.fromNodeId, ref.referenceName, ref.referenceKind, ref.line, ref.col, ref.filePath, ref.moduleSpecifier ?? null);
-}
-
-/** Delete every unresolved reference originating from a file. */
-export function deleteUnresolvedRefsForFile(db, filePath) {
-  db.prepare("DELETE FROM unresolved_refs WHERE file_path = ?").run(filePath);
-}
-
-/** Summary counters used by /ast status. */
-export function stats(db) {
-  const files = db.prepare("SELECT COUNT(*) AS count FROM files").get().count;
-  const nodes = db.prepare("SELECT COUNT(*) AS count FROM nodes").get().count;
-  const edges = db.prepare("SELECT COUNT(*) AS count FROM edges").get().count;
-  const unresolved = db.prepare("SELECT COUNT(*) AS count FROM unresolved_refs WHERE status = 'pending'").get().count;
-  return { files, nodes, edges, unresolved };
-}
-
-/** Store a provenance metadata value. */
-export function setMetadata(db, key, value) {
-  db.prepare(`
-    INSERT INTO project_metadata(key, value, updated_at) VALUES (?, ?, ?)
-    ON CONFLICT(key) DO UPDATE SET value = excluded.value, updated_at = excluded.updated_at
-  `).run(key, value, Date.now());
-}
-
-/** Read a provenance metadata value, or undefined when absent. */
-export function getMetadata(db, key) {
-  const row = db.prepare("SELECT value FROM project_metadata WHERE key = ?").get(key);
-  return row?.value;
-}