fixo-cli 1.0.3 → 2.0.0

package/dist/runtime/os-sandbox.js

@@ -0,0 +1,246 @@
+/**
+ * os-sandbox.ts — Phase 1.2 OS-level sandbox wrapper for `run_command`.
+ *
+ * The CLI already enforces a regex-based command-parser layer and
+ * a WorkspaceGuard path-boundary check before any shell command runs.
+ * That stops the obvious cases (`> /etc/passwd`, `sed -i ../foo`) but
+ * is not a complete defence against a confused or prompt-injected
+ * model — a regex blocklist is a speed bump, not a wall.
+ *
+ * This module adds an OS-enforced second layer that the model has no
+ * way around: `sandbox-exec` on macOS, `bwrap` on Linux. Both use the
+ * same OS primitives Apple's own `xcrun` and Flatpak rely on, so the
+ * deny semantics are exactly the kernel's, not a JavaScript regex.
+ *
+ * Design choices, deliberate:
+ *
+ *  - Default is OFF (config `safety.sandboxMode === 'guard'`). Turning
+ *    it on changes runtime behaviour and we want users to opt in
+ *    explicitly, not be surprised by a build that suddenly fails
+ *    because their `npm test` script writes to `~/.npm/_cacache`.
+ *
+ *  - When ON and the platform binary is missing, we surface a clear
+ *    structured error instead of silently downgrading. A user who
+ *    opted into `os-sandbox` and got the regex layer would have the
+ *    worst of both worlds — false safety.
+ *
+ *  - Network is allowed by default — most legitimate build/test
+ *    commands need it (npm install, cargo fetch, pip). Callers that
+ *    want strict isolation can pass `allowNetwork: false`.
+ *
+ *  - Reads are unrestricted. The agent legitimately needs to inspect
+ *    the system to plan its work. Writes are the dangerous side.
+ *
+ *  - The macOS profile is generated at runtime into the OS temp dir
+ *    from a template (no static `.sb` file shipped) so allow-write
+ *    paths can be parameterised per-invocation without macros.
+ *    `sandbox-exec` is technically deprecated by Apple but still
+ *    ships and works on darwin 25; what's available today wins.
+ */
+import { spawnSync } from 'node:child_process';
+import fs from 'node:fs';
+import os from 'node:os';
+import path from 'node:path';
+/**
+ * Why a sandboxed `run_command` couldn't actually be wrapped in an
+ * OS sandbox. Distinct from a *command-failed-inside-the-sandbox*
+ * error, which surfaces through {@link SpawnSyncReturns.status} as
+ * usual.
+ */
+export class SandboxUnavailableError extends Error {
+    platform;
+    reason;
+    constructor(platform, reason) {
+        super(`OS sandbox unavailable on ${platform}: ${reason}`);
+        this.platform = platform;
+        this.reason = reason;
+        this.name = 'SandboxUnavailableError';
+    }
+}
+/* ──────────────────────── Public entry point ──────────────────────── */
+/**
+ * Run a shell command inside an OS-enforced sandbox.
+ *
+ * Throws {@link SandboxUnavailableError} if the current platform has
+ * no supported wrapper or the required binary is not on `$PATH`.
+ * Otherwise returns the same {@link SpawnSyncReturns} shape the
+ * caller would get from a plain `spawnSync(command, { shell: true })`
+ * call — so the call site only differs by routing decision, not by
+ * result handling.
+ */
+export function runSandboxed(command, opts) {
+    const platform = process.platform;
+    if (platform === 'darwin') {
+        return runSandboxedMacos(command, opts);
+    }
+    if (platform === 'linux') {
+        return runSandboxedLinux(command, opts);
+    }
+    throw new SandboxUnavailableError(platform, 'no supported OS sandbox wrapper for this platform');
+}
+/**
+ * Best-effort probe: would {@link runSandboxed} succeed on this
+ * machine without actually running a command? Used by the CLI's
+ * startup sanity check so we can warn at boot rather than at the
+ * first command. Returns `null` on success, a structured reason on
+ * failure.
+ */
+export function probeSandbox() {
+    const platform = process.platform;
+    if (platform === 'darwin') {
+        const which = whichBinary('sandbox-exec');
+        return which ? { ok: true } : { ok: false, reason: '`sandbox-exec` not on $PATH (macOS system tool)' };
+    }
+    if (platform === 'linux') {
+        const which = whichBinary('bwrap');
+        if (which)
+            return { ok: true };
+        return {
+            ok: false,
+            reason: '`bwrap` (bubblewrap) not installed. Install with: apt install bubblewrap | dnf install bubblewrap | apk add bubblewrap',
+        };
+    }
+    return { ok: false, reason: `unsupported platform: ${platform}` };
+}
+/* ──────────────────────── macOS: sandbox-exec ──────────────────────── */
+function runSandboxedMacos(command, opts) {
+    if (!whichBinary('sandbox-exec')) {
+        throw new SandboxUnavailableError('darwin', '`sandbox-exec` not on $PATH');
+    }
+    const profile = buildMacosProfile({
+        allowedWritePaths: dedupeAndResolve([...opts.allowedWritePaths, os.tmpdir()]),
+        allowNetwork: opts.allowNetwork,
+    });
+    // Write the profile to a temp file. sandbox-exec will read it
+    // before exec; we delete it immediately after the child returns.
+    const profilePath = path.join(os.tmpdir(), `fixo-sandbox-${process.pid}-${Date.now()}.sb`);
+    fs.writeFileSync(profilePath, profile, { encoding: 'utf-8', mode: 0o600 });
+    try {
+        return spawnSync('sandbox-exec', ['-f', profilePath, '/bin/sh', '-c', command], {
+            cwd: opts.cwd,
+            encoding: 'utf-8',
+            timeout: opts.timeout ?? 60_000,
+            maxBuffer: opts.maxBuffer ?? 1024 * 1024,
+            env: opts.env ?? process.env,
+        });
+    }
+    finally {
+        try {
+            fs.unlinkSync(profilePath);
+        }
+        catch { /* safe: best-effort cleanup of tmp profile */ }
+    }
+}
+function buildMacosProfile(opts) {
+    // Quote each allow-write path in TinyScheme-style string literal
+    // form. sandbox-exec uses backslash-escaped double-quoted strings.
+    const writeRoots = opts.allowedWritePaths
+        .map((p) => `  (subpath ${quoteSb(p)})`)
+        .join('\n');
+    const networkRule = opts.allowNetwork ? '(allow network*)' : '(deny network*)';
+    // Inspired by Apple's own /System/Library/Sandbox/Profiles seed
+    // profiles. `allow file-read*` is total because the agent must be
+    // able to read the system to do useful work; writes are the side
+    // we lock down. The auxiliary `allow` rules (sysctl, mach-lookup,
+    // process-fork, ipc-posix-shm) are the bare minimum a `/bin/sh`
+    // exec of a typical build command needs to not crash.
+    return `(version 1)
+(deny default)
+
+; Reads: unrestricted. The agent needs to inspect the system.
+(allow file-read*)
+
+; Writes: only inside the explicitly-allowed roots.
+(allow file-write*
+${writeRoots})
+
+; Process / sysctl / IPC: required for /bin/sh to execute a command.
+(allow process-fork)
+(allow process-exec*)
+(allow sysctl-read)
+(allow mach-lookup)
+(allow file-ioctl)
+(allow ipc-posix-shm)
+(allow signal (target self))
+
+; Network rule (gated by caller).
+${networkRule}
+`;
+}
+function quoteSb(s) {
+    // sandbox-exec strings use double-quotes with backslash escaping.
+    return `"${s.replace(/\\/g, '\\\\').replace(/"/g, '\\"')}"`;
+}
+/* ──────────────────────── Linux: bubblewrap ──────────────────────── */
+function runSandboxedLinux(command, opts) {
+    if (!whichBinary('bwrap')) {
+        throw new SandboxUnavailableError('linux', '`bwrap` (bubblewrap) not installed. Install with: apt install bubblewrap | dnf install bubblewrap | apk add bubblewrap');
+    }
+    const writeRoots = dedupeAndResolve([...opts.allowedWritePaths, os.tmpdir()]);
+    const args = [
+        // Read-only mount the standard system tree. /usr is the
+        // important one — that's where /bin/sh, coreutils, etc. live.
+        '--ro-bind', '/usr', '/usr',
+        '--ro-bind', '/bin', '/bin',
+        '--ro-bind', '/sbin', '/sbin',
+        '--ro-bind', '/lib', '/lib',
+        '--symlink', 'usr/lib64', '/lib64',
+        '--ro-bind', '/etc', '/etc',
+        // Procfs + devtmpfs: needed by virtually every binary.
+        '--proc', '/proc',
+        '--dev', '/dev',
+        // Tmpfs for /run and /var so the child can drop pidfiles.
+        '--tmpfs', '/run',
+        '--tmpfs', '/var',
+    ];
+    for (const wr of writeRoots) {
+        args.push('--bind', wr, wr);
+    }
+    if (!opts.allowNetwork) {
+        args.push('--unshare-net');
+    }
+    // PID + user namespaces — cheap isolation that doesn't break
+    // most build tools.
+    args.push('--unshare-pid');
+    args.push('--die-with-parent');
+    args.push('--chdir', opts.cwd);
+    args.push('/bin/sh', '-c', command);
+    return spawnSync('bwrap', args, {
+        cwd: opts.cwd,
+        encoding: 'utf-8',
+        timeout: opts.timeout ?? 60_000,
+        maxBuffer: opts.maxBuffer ?? 1024 * 1024,
+        env: opts.env ?? process.env,
+    });
+}
+/* ──────────────────────── Helpers ──────────────────────── */
+function whichBinary(name) {
+    const which = spawnSync('which', [name], { encoding: 'utf-8' });
+    return which.status === 0 && which.stdout.trim().length > 0;
+}
+function dedupeAndResolve(paths) {
+    const seen = new Set();
+    const out = [];
+    for (const p of paths) {
+        // Canonicalize: on macOS `/var/folders/...` is actually
+        // `/private/var/folders/...`; sandbox-exec matches on the
+        // canonical path, so an allow rule written against the symlink
+        // path silently denies. Same trap exists for `/tmp` →
+        // `/private/tmp`. realpathSync resolves both. Fall back to the
+        // resolved-but-uncanonicalized path if the directory does not
+        // exist yet (callers may pass it before creation).
+        let abs;
+        try {
+            abs = fs.realpathSync(path.resolve(p));
+        }
+        catch {
+            abs = path.resolve(p);
+        }
+        if (seen.has(abs))
+            continue;
+        seen.add(abs);
+        out.push(abs);
+    }
+    return out;
+}
+//# sourceMappingURL=os-sandbox.js.map

package/dist/runtime/os-sandbox.js.map

@@ -0,0 +1 @@
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package/dist/runtime/run-inventory.d.ts

@@ -0,0 +1,17 @@
+import fs from 'node:fs';
+/**
+ * Phase 4b — Shared per-run file inventory cache.
+ * Memoizes listDir and fileStats for the duration of an orchestrator run
+ * to reduce redundant fs calls from parallel workers.
+ */
+export declare class RunInventory {
+    readonly runId: string;
+    private dirCache;
+    private statCache;
+    constructor(runId: string);
+    listDir(dirPath: string): fs.Dirent[];
+    fileStats(filePath: string): fs.Stats;
+    invalidate(filePath: string): void;
+}
+export declare function getRunInventory(runId: string): RunInventory;
+//# sourceMappingURL=run-inventory.d.ts.map

package/dist/runtime/run-inventory.d.ts.map

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package/dist/runtime/run-inventory.js

@@ -0,0 +1,49 @@
+import fs from 'node:fs';
+import path from 'node:path';
+/**
+ * Phase 4b — Shared per-run file inventory cache.
+ * Memoizes listDir and fileStats for the duration of an orchestrator run
+ * to reduce redundant fs calls from parallel workers.
+ */
+export class RunInventory {
+    runId;
+    dirCache = new Map();
+    statCache = new Map();
+    constructor(runId) {
+        this.runId = runId;
+    }
+    listDir(dirPath) {
+        const cached = this.dirCache.get(dirPath);
+        if (cached)
+            return cached;
+        const list = fs.readdirSync(dirPath, { withFileTypes: true });
+        this.dirCache.set(dirPath, list);
+        return list;
+    }
+    fileStats(filePath) {
+        const cached = this.statCache.get(filePath);
+        if (cached)
+            return cached;
+        const stats = fs.statSync(filePath);
+        this.statCache.set(filePath, stats);
+        return stats;
+    }
+    invalidate(filePath) {
+        this.statCache.delete(filePath);
+        // Invalidate the parent directory's listing so it gets re-read
+        const parentDir = path.dirname(filePath);
+        this.dirCache.delete(parentDir);
+        // Also invalidate the file itself in case it was considered a directory
+        this.dirCache.delete(filePath);
+    }
+}
+const instances = new Map();
+export function getRunInventory(runId) {
+    let inv = instances.get(runId);
+    if (!inv) {
+        inv = new RunInventory(runId);
+        instances.set(runId, inv);
+    }
+    return inv;
+}
+//# sourceMappingURL=run-inventory.js.map

package/dist/runtime/run-inventory.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"run-inventory.js","sourceRoot":"","sources":["../../src/runtime/run-inventory.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,SAAS,CAAC;AACzB,OAAO,IAAI,MAAM,WAAW,CAAC;AAE7B;;;;GAIG;AACH,MAAM,OAAO,YAAY;IAIK;IAHpB,QAAQ,GAAG,IAAI,GAAG,EAAuB,CAAC;IAC1C,SAAS,GAAG,IAAI,GAAG,EAAoB,CAAC;IAEhD,YAA4B,KAAa;QAAb,UAAK,GAAL,KAAK,CAAQ;IAAG,CAAC;IAE7C,OAAO,CAAC,OAAe;QACrB,MAAM,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAC1C,IAAI,MAAM;YAAE,OAAO,MAAM,CAAC;QAE1B,MAAM,IAAI,GAAG,EAAE,CAAC,WAAW,CAAC,OAAO,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;QAC9D,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QACjC,OAAO,IAAI,CAAC;IACd,CAAC;IAED,SAAS,CAAC,QAAgB;QACxB,MAAM,MAAM,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;QAC5C,IAAI,MAAM;YAAE,OAAO,MAAM,CAAC;QAE1B,MAAM,KAAK,GAAG,EAAE,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;QACpC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;QACpC,OAAO,KAAK,CAAC;IACf,CAAC;IAED,UAAU,CAAC,QAAgB;QACzB,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;QAEhC,+DAA+D;QAC/D,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC;QACzC,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAChC,wEAAwE;QACxE,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;IACjC,CAAC;CACF;AAED,MAAM,SAAS,GAAG,IAAI,GAAG,EAAwB,CAAC;AAElD,MAAM,UAAU,eAAe,CAAC,KAAa;IAC3C,IAAI,GAAG,GAAG,SAAS,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;IAC/B,IAAI,CAAC,GAAG,EAAE,CAAC;QACT,GAAG,GAAG,IAAI,YAAY,CAAC,KAAK,CAAC,CAAC;QAC9B,SAAS,CAAC,GAAG,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;IAC5B,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC"}

package/dist/runtime/session-snapshots.d.ts

@@ -1,10 +1,11 @@
+import type { ChatContentBlock } from '../shared/types.js';
 import { type TodoList } from '../context/todo.js';
 export declare const SNAPSHOT_VERSION: 1;
 export declare const SNAPSHOT_KIND: "fixo-cli-session";
 export type AgentMode = 'PLAN' | 'BUILD' | 'EXPLORE' | 'SCOUT';
 export interface SessionMessage {
     role: 'system' | 'user' | 'assistant' | 'tool';
-    content: string;
+    content: string | ChatContentBlock[];
     /** Tool name for `role === 'tool'` messages. */
     name?: string;
     /** Monotonic per-conversation index. */
@@ -29,8 +30,17 @@ export interface SessionSnapshot {
     mode: AgentMode;
     /** Files the user had selected (e.g. via `--files` or the file picker). */
     selectedFiles: string[];
-    /** Optional user-supplied session summary. */
+    /** Optional user-supplied session summary (auto-derived from the
+     *  first user prompt when not set). */
     summary?: string;
+    /**
+     * User-chosen human-readable label for this session — what the user
+     * sees in the header, in `/sessions`, and what they pass to `/resume`.
+     * Distinct from {@link summary} (auto-derived) and {@link id} (file
+     * basename); ids are kept stable across renames so existing resume
+     * links never break.
+     */
+    label?: string;
     /** Optional system-prompt override (FIXO.md block stripped, but
      *  the caller's original override preserved). */
     fixedInstructions?: string;
@@ -47,6 +57,10 @@ export interface SaveInput {
     mode: AgentMode;
     selectedFiles: string[];
     summary?: string;
+    /** User-chosen session label. See {@link SessionSnapshot.label}. */
+    label?: string;
+    /** Reuse a specific id (only used by /resume to overwrite in place). */
+    id?: string;
     fixedInstructions?: string;
     /** If omitted, the todo list is reloaded from disk. */
     todo?: TodoList;
@@ -71,6 +85,42 @@ export interface SnapshotListEntry {
     tokens: number;
     items: number;
     summary?: string;
+    label?: string;
 }
 export declare function listSnapshots(cwd: string): SnapshotListEntry[];
+/**
+ * Maximum label length. Long enough for "clinic-website-accessibility-audit"
+ * but short enough to fit in a session header pill on a 100-col terminal.
+ */
+export declare const MAX_LABEL_LENGTH = 64;
+/**
+ * Returns true if the label is safe to store, render, and search.
+ *
+ * Rules:
+ *   - 1..MAX_LABEL_LENGTH characters
+ *   - letters, digits, dash, underscore, dot, and spaces only
+ *   - no path separators (`/`, `\`) so a label can never affect
+ *     where the snapshot file lives on disk
+ *   - no shell metacharacters (backtick, `$`, `;`, `|`, `&`, `<`, `>`)
+ *     so a future render path that interpolates the label cannot be
+ *     hijacked
+ *
+ * The validator is conservative on purpose — labels are user-facing,
+ * not creative writing. The file id stays as the durable identifier.
+ */
+export declare function isValidSessionLabel(label: string): boolean;
+export interface RenameResult {
+    ok: boolean;
+    id: string;
+    label?: string;
+    error?: string;
+}
+/**
+ * Atomically rewrite the `label` field of an existing snapshot.
+ * The on-disk file basename (the snapshot id) is **never** renamed —
+ * existing `/resume <id>` invocations keep working after a relabel.
+ *
+ * Pass `label: undefined` to clear an existing label.
+ */
+export declare function renameSnapshot(cwd: string, id: string, label: string | undefined): RenameResult;
 //# sourceMappingURL=session-snapshots.d.ts.map

package/dist/runtime/session-snapshots.d.ts.map

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package/dist/runtime/session-snapshots.js

@@ -51,7 +51,7 @@ export function snapshotPath(cwd, id) {
     return path.join(dirForCwd(cwd), `${id}.json`);
 }
 export function saveSnapshot(input, now = new Date()) {
-    const id = makeSnapshotId(now);
+    const id = input.id ?? makeSnapshotId(now);
     const file = snapshotPath(input.cwd, id);
     const dir = path.dirname(file);
     try {
@@ -73,6 +73,7 @@ export function saveSnapshot(input, now = new Date()) {
         mode: input.mode,
         selectedFiles: input.selectedFiles,
         summary: input.summary,
+        label: input.label,
         fixedInstructions: input.fixedInstructions,
         todo,
     };
@@ -154,6 +155,7 @@ export function listSnapshots(cwd) {
                 tokens: typeof obj.tokens === 'number' ? obj.tokens : 0,
                 items,
                 summary: typeof obj.summary === 'string' ? obj.summary : undefined,
+                label: typeof obj.label === 'string' ? obj.label : undefined,
             });
         }
         catch {
@@ -163,4 +165,77 @@ export function listSnapshots(cwd) {
     out.sort((a, b) => b.createdAt.localeCompare(a.createdAt));
     return out;
 }
+/* ──────────────────────── rename ──────────────────────── */
+/**
+ * Maximum label length. Long enough for "clinic-website-accessibility-audit"
+ * but short enough to fit in a session header pill on a 100-col terminal.
+ */
+export const MAX_LABEL_LENGTH = 64;
+/**
+ * Returns true if the label is safe to store, render, and search.
+ *
+ * Rules:
+ *   - 1..MAX_LABEL_LENGTH characters
+ *   - letters, digits, dash, underscore, dot, and spaces only
+ *   - no path separators (`/`, `\`) so a label can never affect
+ *     where the snapshot file lives on disk
+ *   - no shell metacharacters (backtick, `$`, `;`, `|`, `&`, `<`, `>`)
+ *     so a future render path that interpolates the label cannot be
+ *     hijacked
+ *
+ * The validator is conservative on purpose — labels are user-facing,
+ * not creative writing. The file id stays as the durable identifier.
+ */
+export function isValidSessionLabel(label) {
+    if (typeof label !== 'string')
+        return false;
+    const trimmed = label.trim();
+    if (trimmed.length === 0 || trimmed.length > MAX_LABEL_LENGTH)
+        return false;
+    // Allow Unicode letters/digits + space + dash + underscore + dot.
+    return /^[\p{L}\p{N}._\- ]+$/u.test(trimmed);
+}
+/**
+ * Atomically rewrite the `label` field of an existing snapshot.
+ * The on-disk file basename (the snapshot id) is **never** renamed —
+ * existing `/resume <id>` invocations keep working after a relabel.
+ *
+ * Pass `label: undefined` to clear an existing label.
+ */
+export function renameSnapshot(cwd, id, label) {
+    if (label !== undefined && !isValidSessionLabel(label)) {
+        return {
+            ok: false,
+            id,
+            error: `invalid label: must be 1..${MAX_LABEL_LENGTH} chars, letters/digits/space/dash/underscore/dot only`,
+        };
+    }
+    const loaded = loadSnapshot(cwd, id);
+    if (!loaded.ok || !loaded.snapshot) {
+        return { ok: false, id, error: loaded.error ?? 'snapshot not found' };
+    }
+    const updated = {
+        ...loaded.snapshot,
+        label: label?.trim() || undefined,
+    };
+    const file = snapshotPath(cwd, id);
+    const tmp = `${file}.tmp`;
+    try {
+        fs.writeFileSync(tmp, JSON.stringify(updated, null, 2), {
+            encoding: 'utf-8',
+            mode: 0o600,
+        });
+        fs.renameSync(tmp, file);
+    }
+    catch (err) {
+        try {
+            fs.unlinkSync(tmp);
+        }
+        catch {
+            /* ignore tmp cleanup failure */
+        }
+        return { ok: false, id, error: err.message };
+    }
+    return { ok: true, id, label: updated.label };
+}
 //# sourceMappingURL=session-snapshots.js.map

package/dist/runtime/session-snapshots.js.map

@@ -1 +1 @@
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package/dist/runtime/staging.d.ts.map

@@ -1 +1 @@
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package/dist/runtime/staging.js

@@ -35,6 +35,7 @@ import crypto from 'node:crypto';
 import fs from 'node:fs';
 import path from 'node:path';
 import { WorkspaceGuard } from '../workspace-guard.js';
+import { getRunInventory } from './run-inventory.js';
 // ---------------------------------------------------------------------------
 // Errors
 // ---------------------------------------------------------------------------
@@ -52,7 +53,7 @@ export class PreCommitHookRejectedError extends Error {
     id;
     cause;
     constructor(id, cause) {
-        super(`Pre-commit hook rejected staged write ${id}: ${String(cause)}`);
+        super(`Write rejected by pre-commit hook. Reason: ${String(cause)}. (Staged write id: ${id})`);
         this.name = 'PreCommitHookRejectedError';
         this.id = id;
         this.cause = cause;
@@ -303,6 +304,7 @@ export class AtomicStagingManager {
             const bytes = Buffer.byteLength(fs.readFileSync(target, 'utf-8'), 'utf-8');
             // Tidy up the meta sidecar.
             rmSafe(entry.metaPath);
+            getRunInventory(this.runId).invalidate(target);
             return {
                 committed: true,
                 targetPath: target,
@@ -404,6 +406,7 @@ export class AtomicStagingManager {
                 rmSafe(backup);
             rmSafe(metaPath);
             const bytes = Buffer.byteLength(fs.readFileSync(resolved, 'utf-8'), 'utf-8');
+            getRunInventory(this.runId).invalidate(resolved);
             return { ok: true, path: resolved, bytes };
         }
         catch (err) {