filedist 0.29.0 → 0.30.0

package/README.md

@@ -308,7 +308,7 @@ Each entry in the `filedist.sets` array in `package.json` supports the following
 | `selector.exclude` | `string[]` | `["package.json","bin/**","README.md","node_modules/**"]` (when `files` is unset), none otherwise | Glob patterns to exclude files even when they match `selector.files` (e.g. `["test/**", "**/*.test.*"]`). |
 | `selector.contentRegexes` | `string[]` | none | Regex patterns (as strings) to filter files by content. Only files matching at least one pattern are extracted. |
 | `output.force` | `boolean` | `false` | Allow overwriting existing files or files owned by a different package. |
-| `output.keepExisting` | `boolean` | `false` | Skip files that already exist but create them when absent. Cannot be combined with `force`. |
+| `output.mutable` | `boolean` | `false` | Skip files that already exist; mark extracted files as mutable (check ignores content changes). Cannot be combined with `force`. |
 | `output.noSync` | `boolean` | `false` | Keep stale managed files on disk during extract instead of deleting them. `check` still reports them as extra drift until they are removed or synced. |
 | `output.gitignore` | `boolean` | `true` | Create/update a `.gitignore` file alongside each `.filedist` marker file. Set to `false` to disable. |
 | `output.managed` | `boolean` | `true` | Write files with a `.filedist` marker, `.gitignore` update, and read-only flag. Set to `false` to skip tracking. Existing files are skipped when set to `false`. |
@@ -472,7 +472,7 @@ When `extract` recurses, the caller's `output` flags are inherited by every tran
 |---|---|
 | `force: true` | Transitive entries also overwrite unmanaged / foreign files |
 | `dryRun: true` | No files are written anywhere in the hierarchy |
-| `keepExisting: true` | Existing files are skipped at every level |
+| `mutable: true` | Existing files are skipped at every level; extracted files are marked as mutable |
 | `gitignore: false` | No `.gitignore` entries are created anywhere |
 | `managed: false` | All transitive files are written without a marker or read-only flag |
 | `symlinks` / `contentReplacements` | Appended to each transitive entry's own lists |
@@ -539,8 +539,8 @@ Extract options:
                            "my-pkg@^1.0.0,git:github.com/org/repo.git@main"
   --output, -o <dir>       Output directory (default: current directory)
   --force                  Overwrite existing files or files owned by a different package
-  --keep-existing          Skip files that already exist; create them when absent. Cannot be
-                           combined with --force
+  --mutable                Skip files that already exist; mark extracted files as mutable (check ignores
+                           content changes). Cannot be combined with --force
   --gitignore [bool]       Disable .gitignore management when set to false (enabled by default)
   --managed [bool]         Set to false to write files without a .filedist marker, .gitignore
                            update, or read-only flag. Existing files are skipped. Files can be

package/dist/cli/argv.d.ts

@@ -17,7 +17,7 @@ export type ParsedArgv = {
     presets?: string[];
     configFile?: string;
     force?: boolean;
-    keepExisting?: boolean;
+    mutable?: boolean;
     /** --nosync / --nosync=true|false */
     nosync?: boolean;
     /** --gitignore / --gitignore=true|false */

package/dist/cli/argv.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"argv.d.ts","sourceRoot":"","sources":["../../src/cli/argv.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,cAAc,EAAE,oBAAoB,EAAgC,MAAM,UAAU,CAAC;AAG9F,MAAM,MAAM,iBAAiB,GAAG,cAAc,GAAG;IAC/C,cAAc,CAAC,EAAE,MAAM,EAAE,CAAC;CAC3B,CAAC;AAEF;;;;GAIG;AACH,MAAM,MAAM,UAAU,GAAG;IACvB,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;IACjB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,cAAc,CAAC,EAAE,MAAM,EAAE,CAAC;IAC1B,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,qCAAqC;IACrC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,2CAA2C;IAC3C,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,iEAAiE;IACjE,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,uDAAuD;IACvD,YAAY,CAAC,EAAE,OAAO,CAAC;CACxB,CAAC;AAEF,wBAAgB,uBAAuB,CACrC,MAAM,EAAE,UAAU,EAClB,MAAM,CAAC,EAAE,iBAAiB,GAAG,IAAI,GAChC,MAAM,EAAE,CAMV;AA0BD;;;GAGG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,UAAU,CAkEpD;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAClC,MAAM,EAAE,UAAU,EAClB,OAAO,GAAE,MAAM,EAAyB,GACvC,oBAAoB,EAAE,GAAG,IAAI,CAoB/B;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,CAChC,OAAO,EAAE,oBAAoB,EAAE,EAC/B,MAAM,EAAE,UAAU,GACjB,oBAAoB,EAAE,CA8BxB;AAED;;;;;;GAMG;AACH,wBAAgB,+BAA+B,CAC7C,MAAM,EAAE,cAAc,GAAG,IAAI,EAC7B,IAAI,EAAE,MAAM,EAAE,GACb,oBAAoB,EAAE,CAexB"}

package/dist/cli/argv.js

@@ -30,7 +30,7 @@ function buildOutputFromArgv(parsed) {
     return {
         ...(parsed.output !== undefined ? { path: parsed.output } : {}),
         ...(parsed.force !== undefined ? { force: parsed.force } : {}),
-        ...(parsed.keepExisting !== undefined ? { keepExisting: parsed.keepExisting } : {}),
+        ...(parsed.mutable !== undefined ? { mutable: parsed.mutable } : {}),
         ...(parsed.nosync !== undefined ? { noSync: parsed.nosync } : {}),
         ...(parsed.gitignore !== undefined ? { gitignore: parsed.gitignore } : {}),
         ...(parsed.managed !== undefined ? { managed: parsed.managed } : {}),
@@ -71,9 +71,9 @@ function parseArgv(argv) {
             .filter(Boolean);
     };
     const force = getBoolFlag('--force');
-    const keepExisting = getBoolFlag('--keep-existing');
-    if (force === true && keepExisting === true) {
-        throw new Error('--force and --keep-existing are mutually exclusive');
+    const mutable = getBoolFlag('--mutable');
+    if (force === true && mutable === true) {
+        throw new Error('--force and --mutable are mutually exclusive');
     }
     const packages = getCommaSplit('--packages');
     const all = getBoolFlag('--all');
@@ -92,7 +92,7 @@ function parseArgv(argv) {
         presets,
         configFile: getValue('--config'),
         force,
-        keepExisting,
+        mutable,
         nosync: getBoolFlag('--nosync'),
         gitignore: getBoolFlag('--gitignore'),
         managed: getBoolFlag('--managed'),
@@ -136,7 +136,7 @@ function applyArgvOverrides(entries, parsed) {
             ...entry.output,
             ...(parsed.output !== undefined ? { path: parsed.output } : {}),
             ...(parsed.force !== undefined ? { force: parsed.force } : {}),
-            ...(parsed.keepExisting !== undefined ? { keepExisting: parsed.keepExisting } : {}),
+            ...(parsed.mutable !== undefined ? { mutable: parsed.mutable } : {}),
             ...(parsed.nosync !== undefined ? { noSync: parsed.nosync } : {}),
             ...(parsed.gitignore !== undefined ? { gitignore: parsed.gitignore } : {}),
             ...(parsed.managed !== undefined ? { managed: parsed.managed } : {}),

package/dist/cli/argv.js.map

@@ -1 +1 @@
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package/dist/cli/usage.js

@@ -24,7 +24,7 @@ Options:
   --files <globs>         Comma-separated glob patterns for file selection.
   --content-regex <re>    Comma-separated regex strings for content filtering.
   --force                 Overwrite existing unmanaged files.
-  --keep-existing         Skip files that already exist; create missing ones.
+  --mutable               Skip files that already exist; mark extracted files as mutable (check ignores content changes).
   --nosync [bool]         Keep stale managed files on disk during extract (default: false).
   --gitignore [bool]      Enable/disable .gitignore update (default: true). Use --gitignore=false to disable.
   --managed [bool]        Enable/disable managed mode (default: true). Use --managed=false to write without .filedist marker.

package/dist/fileset/check.d.ts

@@ -1,15 +1,18 @@
-import { SelectorConfig, OutputConfig, ManagedFileMetadata, CheckResult } from '../types';
+import { SelectorConfig, ManagedFileMetadata, CheckResult } from '../types';
 /**
- * Check whether locally extracted files are in sync with their package source.
- * Reuses diff logic to classify files as missing, modified, or extra.
- * Applies contentReplacements before hash comparison.
+ * Check whether locally extracted files are in sync with their source.
  *
- * @param pkgPath       Absolute path to the installed package directory, or null if not installed.
+ * Uses the checksum stored in each .filedist marker entry to verify file integrity
+ * without requiring access to the original source package.
+ * Mutable marker entries (extracted with mutable option) are excluded from the check.
+ * Entries without a stored checksum are reported as modified (re-extract to repair).
+ *
+ * @param pkgPath       Absolute path to the installed package directory, or null.
+ *                      Used only for extra-file detection; not for content comparison.
  * @param outputDir     Absolute path to the output directory.
  * @param selector      SelectorConfig controlling which package files are in scope.
- * @param outputConfig  OutputConfig (used for contentReplacements).
  * @param marker        Managed file entries from the .filedist marker.
  * @returns CheckResult with missing, modified, and extra arrays.
  */
-export declare function checkFileset(pkgPath: string | null, outputDir: string, selector: SelectorConfig, outputConfig: OutputConfig, marker: ManagedFileMetadata[]): Promise<CheckResult>;
+export declare function checkFileset(pkgPath: string | null, outputDir: string, marker: ManagedFileMetadata[], selector?: SelectorConfig): Promise<CheckResult>;
 //# sourceMappingURL=check.d.ts.map

package/dist/fileset/check.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/fileset/check.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,cAAc,EACd,YAAY,EACZ,mBAAmB,EACnB,WAAW,EAEZ,MAAM,UAAU,CAAC;AAMlB;;;;;;;;;;;GAWG;AACH,wBAAsB,YAAY,CAChC,OAAO,EAAE,MAAM,GAAG,IAAI,EACtB,SAAS,EAAE,MAAM,EACjB,QAAQ,EAAE,cAAc,EACxB,YAAY,EAAE,YAAY,EAC1B,MAAM,EAAE,mBAAmB,EAAE,GAC5B,OAAO,CAAC,WAAW,CAAC,CAuDtB"}
+{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/fileset/check.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,cAAc,EAAE,mBAAmB,EAAE,WAAW,EAAE,MAAM,UAAU,CAAC;AAK5E;;;;;;;;;;;;;;GAcG;AACH,wBAAsB,YAAY,CAChC,OAAO,EAAE,MAAM,GAAG,IAAI,EACtB,SAAS,EAAE,MAAM,EACjB,MAAM,EAAE,mBAAmB,EAAE,EAC7B,QAAQ,GAAE,cAAmB,GAC5B,OAAO,CAAC,WAAW,CAAC,CAyCtB"}

package/dist/fileset/check.js

@@ -7,34 +7,24 @@ exports.checkFileset = checkFileset;
 const node_path_1 = __importDefault(require("node:path"));
 const node_fs_1 = __importDefault(require("node:fs"));
 const utils_1 = require("../utils");
-const content_replacements_1 = require("../package/content-replacements");
 const package_files_1 = require("./package-files");
 /**
- * Check whether locally extracted files are in sync with their package source.
- * Reuses diff logic to classify files as missing, modified, or extra.
- * Applies contentReplacements before hash comparison.
+ * Check whether locally extracted files are in sync with their source.
  *
- * @param pkgPath       Absolute path to the installed package directory, or null if not installed.
+ * Uses the checksum stored in each .filedist marker entry to verify file integrity
+ * without requiring access to the original source package.
+ * Mutable marker entries (extracted with mutable option) are excluded from the check.
+ * Entries without a stored checksum are reported as modified (re-extract to repair).
+ *
+ * @param pkgPath       Absolute path to the installed package directory, or null.
+ *                      Used only for extra-file detection; not for content comparison.
  * @param outputDir     Absolute path to the output directory.
  * @param selector      SelectorConfig controlling which package files are in scope.
- * @param outputConfig  OutputConfig (used for contentReplacements).
  * @param marker        Managed file entries from the .filedist marker.
  * @returns CheckResult with missing, modified, and extra arrays.
  */
-async function checkFileset(pkgPath, outputDir, selector, outputConfig, marker) {
-    const contentReplacements = outputConfig.contentReplacements ?? [];
-    if (!pkgPath) {
-        // Package not installed
-        return {
-            missing: marker.map((m) => m.path),
-            modified: [],
-            extra: [],
-        };
-    }
+async function checkFileset(pkgPath, outputDir, marker, selector = {}) {
     const managedByPath = new Map(marker.map((m) => [m.path, m]));
-    // Enumerate files from package (in scope)
-    const pkgFiles = await (0, package_files_1.enumeratePackageFiles)(pkgPath, selector);
-    const pkgFileSet = new Set(pkgFiles);
     const result = { missing: [], modified: [], extra: [] };
     // Check each managed file
     for (const m of marker) {
@@ -43,22 +33,26 @@ async function checkFileset(pkgPath, outputDir, selector, outputConfig, marker)
             result.missing.push(m.path);
             continue;
         }
-        // Compare hash with content replacements applied
-        if (pkgFileSet.has(m.path)) {
-            const srcPath = node_path_1.default.join(pkgPath, m.path);
-            const srcContent = node_fs_1.default.readFileSync(srcPath, 'utf8');
-            const transformed = (0, content_replacements_1.applyContentReplacementsToBuffer)(srcContent, contentReplacements);
-            const srcHash = (0, utils_1.hashBuffer)(transformed);
+        // Mutable files are allowed to change locally; skip content check
+        if (m.mutable)
+            continue;
+        if (m.checksum) {
+            // Compare local file against stored checksum (no source needed)
             const destHash = await (0, utils_1.hashFile)(destPath);
-            if (srcHash !== destHash) {
+            if (m.checksum !== destHash) {
                 result.modified.push(m.path);
             }
         }
+        else {
+            // No stored checksum: marker is from an old extraction; re-extract to repair
+            result.modified.push(m.path);
+        }
     }
     // Find extra files: in filtered package source but never extracted (not in marker).
-    // Only perform this check when the marker is non-empty; an empty marker means no
-    // extraction has taken place or everything was purged, so there is nothing to drift.
-    if (marker.length > 0) {
+    // Only perform this check when the marker is non-empty and package is available;
+    // an empty marker means no extraction has taken place or everything was purged.
+    if (pkgPath && marker.length > 0) {
+        const pkgFiles = await (0, package_files_1.enumeratePackageFiles)(pkgPath, selector);
         for (const relPath of pkgFiles) {
             if (!managedByPath.has(relPath)) {
                 result.extra.push(relPath);

package/dist/fileset/check.js.map

@@ -1 +1 @@
-{"version":3,"file":"check.js","sourceRoot":"","sources":["../../src/fileset/check.ts"],"names":[],"mappings":";;;;;AA2BA,oCA6DC;AAxFD,0DAA6B;AAC7B,sDAAyB;AASzB,oCAAgD;AAChD,0EAAmF;AAEnF,mDAAwD;AAExD;;;;;;;;;;;GAWG;AACI,KAAK,UAAU,YAAY,CAChC,OAAsB,EACtB,SAAiB,EACjB,QAAwB,EACxB,YAA0B,EAC1B,MAA6B;IAE7B,MAAM,mBAAmB,GAA+B,YAAY,CAAC,mBAAmB,IAAI,EAAE,CAAC;IAE/F,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,wBAAwB;QACxB,OAAO;YACL,OAAO,EAAE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;YAClC,QAAQ,EAAE,EAAE;YACZ,KAAK,EAAE,EAAE;SACV,CAAC;IACJ,CAAC;IAED,MAAM,aAAa,GAAG,IAAI,GAAG,CAA8B,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;IAE3F,0CAA0C;IAC1C,MAAM,QAAQ,GAAG,MAAM,IAAA,qCAAqB,EAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IAChE,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,CAAC;IAErC,MAAM,MAAM,GAAgB,EAAE,OAAO,EAAE,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;IAErE,0BAA0B;IAC1B,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,MAAM,QAAQ,GAAG,mBAAI,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;QAC9C,IAAI,CAAC,iBAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC7B,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;YAC5B,SAAS;QACX,CAAC;QAED,iDAAiD;QACjD,IAAI,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC;YAC3B,MAAM,OAAO,GAAG,mBAAI,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;YAC3C,MAAM,UAAU,GAAG,iBAAE,CAAC,YAAY,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;YACpD,MAAM,WAAW,GAAG,IAAA,uDAAgC,EAAC,UAAU,EAAE,mBAAmB,CAAC,CAAC;YACtF,MAAM,OAAO,GAAG,IAAA,kBAAU,EAAC,WAAW,CAAC,CAAC;YAExC,MAAM,QAAQ,GAAG,MAAM,IAAA,gBAAQ,EAAC,QAAQ,CAAC,CAAC;YAE1C,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;gBACzB,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;YAC/B,CAAC;QACH,CAAC;IACH,CAAC;IAED,oFAAoF;IACpF,iFAAiF;IACjF,qFAAqF;IACrF,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACtB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;YAC/B,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC;gBAChC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YAC7B,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC"}
+{"version":3,"file":"check.js","sourceRoot":"","sources":["../../src/fileset/check.ts"],"names":[],"mappings":";;;;;AAuBA,oCA8CC;AArED,0DAA6B;AAC7B,sDAAyB;AAGzB,oCAAoC;AAEpC,mDAAwD;AAExD;;;;;;;;;;;;;;GAcG;AACI,KAAK,UAAU,YAAY,CAChC,OAAsB,EACtB,SAAiB,EACjB,MAA6B,EAC7B,WAA2B,EAAE;IAE7B,MAAM,aAAa,GAAG,IAAI,GAAG,CAA8B,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;IAE3F,MAAM,MAAM,GAAgB,EAAE,OAAO,EAAE,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;IAErE,0BAA0B;IAC1B,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,MAAM,QAAQ,GAAG,mBAAI,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;QAC9C,IAAI,CAAC,iBAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC7B,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;YAC5B,SAAS;QACX,CAAC;QAED,kEAAkE;QAClE,IAAI,CAAC,CAAC,OAAO;YAAE,SAAS;QAExB,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;YACf,gEAAgE;YAChE,MAAM,QAAQ,GAAG,MAAM,IAAA,gBAAQ,EAAC,QAAQ,CAAC,CAAC;YAC1C,IAAI,CAAC,CAAC,QAAQ,KAAK,QAAQ,EAAE,CAAC;gBAC5B,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;YAC/B,CAAC;QACH,CAAC;aAAM,CAAC;YACN,6EAA6E;YAC7E,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;QAC/B,CAAC;IACH,CAAC;IAED,oFAAoF;IACpF,iFAAiF;IACjF,gFAAgF;IAChF,IAAI,OAAO,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACjC,MAAM,QAAQ,GAAG,MAAM,IAAA,qCAAqB,EAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;QAChE,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;YAC/B,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC;gBAChC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YAC7B,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/dist/fileset/diff.js

@@ -52,8 +52,8 @@ async function diff(pkgPath, outputDir, selector, outputConfig, existingMarker,
             }
             continue;
         }
-        if (outputConfig.keepExisting && destExists) {
-            result.toSkip.push({ relPath, reason: 'keep-existing' });
+        if (outputConfig.mutable && destExists) {
+            result.toSkip.push({ relPath, reason: 'mutable' });
             continue;
         }
         if (!destExists) {
@@ -78,7 +78,7 @@ async function diff(pkgPath, outputDir, selector, outputConfig, existingMarker,
         const srcHash = await hashSrcWithReplacements(srcPath, contentReplacements);
         const destHash = await (0, utils_1.hashFile)(destPath);
         if (srcHash === destHash) {
-            result.toSkip.push({ relPath, reason: 'keep-existing' });
+            result.toSkip.push({ relPath, reason: 'unchanged' });
         }
         else {
             result.toModify.push({ relPath, sourcePath: srcPath, destPath, hash: srcHash });

package/dist/fileset/diff.js.map

@@ -1 +1 @@
-{"version":3,"file":"diff.js","sourceRoot":"","sources":["../../src/fileset/diff.ts"],"names":[],"mappings":";;;;;AA6BA,oBA2FC;AAxHD,sDAAyB;AACzB,0DAA6B;AAC7B,8DAAiC;AASjC,oCAAkD;AAClD,0EAAmF;AAEnF,mDAAwD;AAExD;;;;;;;;;;;;GAYG;AACI,KAAK,UAAU,IAAI,CACxB,OAAe,EACf,SAAiB,EACjB,QAAwB,EACxB,YAA0B,EAC1B,cAAqC,EACrC,mBAA+C;IAE/C,MAAM,MAAM,GAAkB;QAC5B,KAAK,EAAE,EAAE;QACT,QAAQ,EAAE,EAAE;QACZ,QAAQ,EAAE,EAAE;QACZ,MAAM,EAAE,EAAE;QACV,SAAS,EAAE,EAAE;KACd,CAAC;IAEF,6DAA6D;IAC7D,MAAM,aAAa,GAAG,IAAI,GAAG,CAC3B,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CACvC,CAAC;IAEF,+BAA+B;IAC/B,MAAM,QAAQ,GAAG,MAAM,IAAA,qCAAqB,EAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IAChE,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,CAAC;IAErC,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;QAC/B,MAAM,OAAO,GAAG,mBAAI,CAAC,IAAI,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;QAC5C,MAAM,QAAQ,GAAG,mBAAI,CAAC,IAAI,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QAC/C,MAAM,UAAU,GAAG,iBAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC;QAC3C,MAAM,SAAS,GAAG,aAAa,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAE7C,IAAI,YAAY,CAAC,OAAO,KAAK,KAAK,EAAE,CAAC;YACnC,IAAI,UAAU,EAAE,CAAC;gBACf,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,CAAC,CAAC;YACzD,CAAC;iBAAM,CAAC;gBACN,gEAAgE;gBAEhE,MAAM,OAAO,GAAG,MAAM,IAAA,gBAAQ,EAAC,OAAO,CAAC,CAAC;gBACxC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC;YAC/E,CAAC;YACD,SAAS;QACX,CAAC;QAED,IAAI,YAAY,CAAC,YAAY,IAAI,UAAU,EAAE,CAAC;YAC5C,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC,CAAC;YACzD,SAAS;QACX,CAAC;QAED,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,MAAM,OAAO,GAAG,MAAM,IAAA,gBAAQ,EAAC,OAAO,CAAC,CAAC;YACxC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC;YAC7E,SAAS;QACX,CAAC;QAED,cAAc;QACd,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,yDAAyD;YACzD,IAAI,YAAY,CAAC,KAAK,EAAE,CAAC;gBACvB,8BAA8B;gBAE9B,MAAM,OAAO,GAAG,MAAM,uBAAuB,CAAC,OAAO,EAAE,mBAAmB,CAAC,CAAC;gBAC5E,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC;YAClF,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC;YACrC,CAAC;YACD,SAAS;QACX,CAAC;QAED,gCAAgC;QAChC,MAAM,OAAO,GAAG,MAAM,uBAAuB,CAAC,OAAO,EAAE,mBAAmB,CAAC,CAAC;QAC5E,MAAM,QAAQ,GAAG,MAAM,IAAA,gBAAQ,EAAC,QAAQ,CAAC,CAAC;QAE1C,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;YACzB,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC,CAAC;QAC3D,CAAC;aAAM,CAAC;YACN,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC;QAClF,CAAC;IACH,CAAC;IAED,wEAAwE;IACxE,gFAAgF;IAChF,sFAAsF;IACtF,IAAI,YAAY,CAAC,OAAO,KAAK,KAAK,EAAE,CAAC;QACnC,KAAK,MAAM,OAAO,IAAI,cAAc,EAAE,CAAC;YACrC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;gBAClC,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;YACrC,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,KAAK,UAAU,uBAAuB,CACpC,OAAe,EACf,mBAA+C;IAE/C,2EAA2E;IAC3E,wEAAwE;IACxE,IAAI,mBAAmB,CAAC,MAAM,KAAK,CAAC,IAAI,IAAA,oBAAY,EAAC,OAAO,CAAC;QAAE,OAAO,IAAA,gBAAQ,EAAC,OAAO,CAAC,CAAC;IACxF,MAAM,OAAO,GAAG,iBAAE,CAAC,YAAY,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IACjD,MAAM,WAAW,GAAG,IAAA,uDAAgC,EAAC,OAAO,EAAE,mBAAmB,CAAC,CAAC;IACnF,OAAO,UAAU,CAAC,WAAW,CAAC,CAAC;AACjC,CAAC;AAED,SAAS,UAAU,CAAC,OAAe;IACjC,OAAO,qBAAM,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AACnE,CAAC"}
+{"version":3,"file":"diff.js","sourceRoot":"","sources":["../../src/fileset/diff.ts"],"names":[],"mappings":";;;;;AA6BA,oBA2FC;AAxHD,sDAAyB;AACzB,0DAA6B;AAC7B,8DAAiC;AASjC,oCAAkD;AAClD,0EAAmF;AAEnF,mDAAwD;AAExD;;;;;;;;;;;;GAYG;AACI,KAAK,UAAU,IAAI,CACxB,OAAe,EACf,SAAiB,EACjB,QAAwB,EACxB,YAA0B,EAC1B,cAAqC,EACrC,mBAA+C;IAE/C,MAAM,MAAM,GAAkB;QAC5B,KAAK,EAAE,EAAE;QACT,QAAQ,EAAE,EAAE;QACZ,QAAQ,EAAE,EAAE;QACZ,MAAM,EAAE,EAAE;QACV,SAAS,EAAE,EAAE;KACd,CAAC;IAEF,6DAA6D;IAC7D,MAAM,aAAa,GAAG,IAAI,GAAG,CAC3B,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CACvC,CAAC;IAEF,+BAA+B;IAC/B,MAAM,QAAQ,GAAG,MAAM,IAAA,qCAAqB,EAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IAChE,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,CAAC;IAErC,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;QAC/B,MAAM,OAAO,GAAG,mBAAI,CAAC,IAAI,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;QAC5C,MAAM,QAAQ,GAAG,mBAAI,CAAC,IAAI,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QAC/C,MAAM,UAAU,GAAG,iBAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC;QAC3C,MAAM,SAAS,GAAG,aAAa,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAE7C,IAAI,YAAY,CAAC,OAAO,KAAK,KAAK,EAAE,CAAC;YACnC,IAAI,UAAU,EAAE,CAAC;gBACf,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,CAAC,CAAC;YACzD,CAAC;iBAAM,CAAC;gBACN,gEAAgE;gBAEhE,MAAM,OAAO,GAAG,MAAM,IAAA,gBAAQ,EAAC,OAAO,CAAC,CAAC;gBACxC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC;YAC/E,CAAC;YACD,SAAS;QACX,CAAC;QAED,IAAI,YAAY,CAAC,OAAO,IAAI,UAAU,EAAE,CAAC;YACvC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAC;YACnD,SAAS;QACX,CAAC;QAED,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,MAAM,OAAO,GAAG,MAAM,IAAA,gBAAQ,EAAC,OAAO,CAAC,CAAC;YACxC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC;YAC7E,SAAS;QACX,CAAC;QAED,cAAc;QACd,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,yDAAyD;YACzD,IAAI,YAAY,CAAC,KAAK,EAAE,CAAC;gBACvB,8BAA8B;gBAE9B,MAAM,OAAO,GAAG,MAAM,uBAAuB,CAAC,OAAO,EAAE,mBAAmB,CAAC,CAAC;gBAC5E,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC;YAClF,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC;YACrC,CAAC;YACD,SAAS;QACX,CAAC;QAED,gCAAgC;QAChC,MAAM,OAAO,GAAG,MAAM,uBAAuB,CAAC,OAAO,EAAE,mBAAmB,CAAC,CAAC;QAC5E,MAAM,QAAQ,GAAG,MAAM,IAAA,gBAAQ,EAAC,QAAQ,CAAC,CAAC;QAE1C,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;YACzB,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,CAAC,CAAC;QACvD,CAAC;aAAM,CAAC;YACN,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC;QAClF,CAAC;IACH,CAAC;IAED,wEAAwE;IACxE,gFAAgF;IAChF,sFAAsF;IACtF,IAAI,YAAY,CAAC,OAAO,KAAK,KAAK,EAAE,CAAC;QACnC,KAAK,MAAM,OAAO,IAAI,cAAc,EAAE,CAAC;YACrC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;gBAClC,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;YACrC,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,KAAK,UAAU,uBAAuB,CACpC,OAAe,EACf,mBAA+C;IAE/C,2EAA2E;IAC3E,wEAAwE;IACxE,IAAI,mBAAmB,CAAC,MAAM,KAAK,CAAC,IAAI,IAAA,oBAAY,EAAC,OAAO,CAAC;QAAE,OAAO,IAAA,gBAAQ,EAAC,OAAO,CAAC,CAAC;IACxF,MAAM,OAAO,GAAG,iBAAE,CAAC,YAAY,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IACjD,MAAM,WAAW,GAAG,IAAA,uDAAgC,EAAC,OAAO,EAAE,mBAAmB,CAAC,CAAC;IACnF,OAAO,UAAU,CAAC,WAAW,CAAC,CAAC;AACjC,CAAC;AAED,SAAS,UAAU,CAAC,OAAe;IACjC,OAAO,qBAAM,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AACnE,CAAC"}

package/dist/fileset/execute.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"execute.d.ts","sourceRoot":"","sources":["../../src/fileset/execute.ts"],"names":[],"mappings":"AAIA,OAAO,EACL,aAAa,EACb,YAAY,EACZ,aAAa,EACb,aAAa,EACb,mBAAmB,EACpB,MAAM,UAAU,CAAC;AAOlB;;;;;;;;;;;;;;;;GAgBG;AAEH,wBAAsB,OAAO,CAC3B,GAAG,EAAE,aAAa,EAClB,SAAS,EAAE,MAAM,EACjB,YAAY,EAAE,YAAY,EAC1B,GAAG,EAAE,aAAa,EAClB,UAAU,EAAE,MAAM,EAClB,cAAc,EAAE,mBAAmB,EAAE,EAErC,IAAI,CAAC,EAAE,MAAM,EACb,OAAO,CAAC,EAAE,OAAO,GAChB,OAAO,CAAC,aAAa,CAAC,CAqHxB;AAED;;;GAGG;AACH,wBAAsB,WAAW,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,OAAO,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAkBvF;AAED;;GAEG;AACH,wBAAsB,QAAQ,CAAC,YAAY,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAEpE"}

package/dist/fileset/execute.js

@@ -83,6 +83,14 @@ async function execute(map, outputDir, outputConfig, pkg, pkgVersion, existingMa
     // processed and counts them independently via deferredDeletes.length.
     // ExecuteResult.deleted is intentionally left at 0 here to avoid double-counting.
     // result.deleted = 0; (already initialised to 0 above)
+    // Apply content replacements BEFORE computing checksums so stored hashes reflect
+    // the final on-disk content (including any in-place text substitutions).
+    if (!dryRun && outputConfig.contentReplacements && outputConfig.contentReplacements.length > 0) {
+        if (verbose) {
+            console.log(`[verbose] execute: applying ${outputConfig.contentReplacements.length} content replacement(s) in ${(0, utils_1.formatDisplayPath)(outputDir, displayBaseDir)}`);
+        }
+        await (0, content_replacements_1.applyContentReplacements)(outputDir, outputConfig.contentReplacements);
+    }
     // Update marker and gitignore
     if (!dryRun && !unmanaged) {
         const marker = (0, markers_1.markerPath)(outputDir);
@@ -94,10 +102,14 @@ async function execute(map, outputDir, outputConfig, pkg, pkgVersion, existingMa
         // Remove deleted paths, add/update new paths
         const updatedEntries = existingMarker.filter((m) => !map.toDelete.includes(m.path) && !addedPaths.has(m.path));
         for (const op of [...map.toAdd, ...map.toModify]) {
+            // Hash the final file content (after any content replacements applied above)
+            const checksum = (0, utils_1.hashFileSync)(op.destPath);
             updatedEntries.push({
                 path: op.relPath,
                 packageName: pkg.name,
                 packageVersion: pkgVersion,
+                checksum,
+                ...(outputConfig.mutable === true ? { mutable: true } : {}),
             });
         }
         if (verbose) {
@@ -112,13 +124,6 @@ async function execute(map, outputDir, outputConfig, pkg, pkgVersion, existingMa
             await (0, gitignore_1.addToGitignore)(outputDir, managedPaths);
         }
     }
-    // Apply content replacements
-    if (!dryRun && outputConfig.contentReplacements && outputConfig.contentReplacements.length > 0) {
-        if (verbose) {
-            console.log(`[verbose] execute: applying ${outputConfig.contentReplacements.length} content replacement(s) in ${(0, utils_1.formatDisplayPath)(outputDir, displayBaseDir)}`);
-        }
-        await (0, content_replacements_1.applyContentReplacements)(outputDir, outputConfig.contentReplacements);
-    }
     return result;
 }
 /**

package/dist/fileset/execute.js.map

@@ -1 +1 @@
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+{"version":3,"file":"execute.js","sourceRoot":"","sources":["../../src/fileset/execute.ts"],"names":[],"mappings":";;;;;AAmCA,0BA+HC;AAMD,kCAkBC;AAKD,4BAEC;AAjMD,+BAA+B;AAC/B,sDAAyB;AACzB,0DAA6B;AAS7B,oCAAsE;AACtE,0EAA2E;AAE3E,uCAAoD;AACpD,2CAA6C;AAE7C;;;;;;;;;;;;;;;;GAgBG;AACH,sCAAsC;AAC/B,KAAK,UAAU,OAAO,CAC3B,GAAkB,EAClB,SAAiB,EACjB,YAA0B,EAC1B,GAAkB,EAClB,UAAkB,EAClB,cAAqC,EAErC,IAAa,EACb,OAAiB;IAEjB,MAAM,MAAM,GAAG,YAAY,CAAC,MAAM,IAAI,KAAK,CAAC;IAC5C,MAAM,SAAS,GAAG,YAAY,CAAC,OAAO,KAAK,KAAK,CAAC;IACjD,MAAM,eAAe,GAAG,YAAY,CAAC,SAAS,KAAK,KAAK,CAAC;IACzD,MAAM,cAAc,GAAG,IAAI,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;IAE7C,MAAM,MAAM,GAAkB;QAC5B,YAAY,EAAE,EAAE;QAChB,KAAK,EAAE,CAAC;QACR,QAAQ,EAAE,CAAC;QACX,OAAO,EAAE,CAAC;QACV,OAAO,EAAE,GAAG,CAAC,MAAM,CAAC,MAAM;KAC3B,CAAC;IAEF,oBAAoB;IACpB,KAAK,MAAM,EAAE,IAAI,GAAG,CAAC,KAAK,EAAE,CAAC;QAC3B,IAAI,OAAO,EAAE,CAAC;YACZ,OAAO,CAAC,GAAG,CACT,kCAAkC,IAAA,yBAAiB,EAAC,EAAE,CAAC,QAAQ,EAAE,cAAc,CAAC,EAAE,CACnF,CAAC;QACJ,CAAC;QACD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,IAAA,iBAAS,EAAC,mBAAI,CAAC,OAAO,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC;YACrC,uEAAuE;YACvE,IAAI,iBAAE,CAAC,UAAU,CAAC,EAAE,CAAC,QAAQ,CAAC,EAAE,CAAC;gBAC/B,iBAAE,CAAC,SAAS,CAAC,EAAE,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;YACnC,CAAC;YACD,iBAAE,CAAC,YAAY,CAAC,EAAE,CAAC,UAAU,EAAE,EAAE,CAAC,QAAQ,CAAC,CAAC;YAC5C,IAAI,CAAC,SAAS,EAAE,CAAC;gBACf,iBAAE,CAAC,SAAS,CAAC,EAAE,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC,CAAC,YAAY;YAChD,CAAC;YACD,MAAM,CAAC,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC;QACxC,CAAC;QACD,MAAM,CAAC,KAAK,IAAI,CAAC,CAAC;IACpB,CAAC;IAED,uBAAuB;IACvB,KAAK,MAAM,EAAE,IAAI,GAAG,CAAC,QAAQ,EAAE,CAAC;QAC9B,IAAI,OAAO,EAAE,CAAC;YACZ,OAAO,CAAC,GAAG,CACT,qCAAqC,IAAA,yBAAiB,EAAC,EAAE,CAAC,QAAQ,EAAE,cAAc,CAAC,EAAE,CACtF,CAAC;QACJ,CAAC;QACD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,IAAA,iBAAS,EAAC,mBAAI,CAAC,OAAO,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC;YACrC,IAAI,iBAAE,CAAC,UAAU,CAAC,EAAE,CAAC,QAAQ,CAAC,EAAE,CAAC;gBAC/B,iBAAE,CAAC,SAAS,CAAC,EAAE,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC,CAAC,mCAAmC;YACvE,CAAC;YACD,iBAAE,CAAC,YAAY,CAAC,EAAE,CAAC,UAAU,EAAE,EAAE,CAAC,QAAQ,CAAC,CAAC;YAC5C,IAAI,CAAC,SAAS,EAAE,CAAC;gBACf,iBAAE,CAAC,SAAS,CAAC,EAAE,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC,CAAC,YAAY;YAChD,CAAC;QACH,CAAC;QACD,MAAM,CAAC,QAAQ,IAAI,CAAC,CAAC;IACvB,CAAC;IAED,8EAA8E;IAC9E,sEAAsE;IACtE,kFAAkF;IAClF,uDAAuD;IAEvD,iFAAiF;IACjF,yEAAyE;IACzE,IAAI,CAAC,MAAM,IAAI,YAAY,CAAC,mBAAmB,IAAI,YAAY,CAAC,mBAAmB,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC/F,IAAI,OAAO,EAAE,CAAC;YACZ,OAAO,CAAC,GAAG,CACT,+BAA+B,YAAY,CAAC,mBAAmB,CAAC,MAAM,8BAA8B,IAAA,yBAAiB,EAAC,SAAS,EAAE,cAAc,CAAC,EAAE,CACnJ,CAAC;QACJ,CAAC;QACD,MAAM,IAAA,+CAAwB,EAAC,SAAS,EAAE,YAAY,CAAC,mBAAmB,CAAC,CAAC;IAC9E,CAAC;IAED,8BAA8B;IAC9B,IAAI,CAAC,MAAM,IAAI,CAAC,SAAS,EAAE,CAAC;QAC1B,MAAM,MAAM,GAAG,IAAA,oBAAU,EAAC,SAAS,CAAC,CAAC;QACrC,sCAAsC;QACtC,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC;YACzB,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,OAAO,CAAC;YACpC,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,OAAO,CAAC;SACxC,CAAC,CAAC;QAEH,6CAA6C;QAC7C,MAAM,cAAc,GAA0B,cAAc,CAAC,MAAM,CACjE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CACjE,CAAC;QAEF,KAAK,MAAM,EAAE,IAAI,CAAC,GAAG,GAAG,CAAC,KAAK,EAAE,GAAG,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC;YACjD,6EAA6E;YAC7E,MAAM,QAAQ,GAAG,IAAA,oBAAY,EAAC,EAAE,CAAC,QAAQ,CAAC,CAAC;YAC3C,cAAc,CAAC,IAAI,CAAC;gBAClB,IAAI,EAAE,EAAE,CAAC,OAAO;gBAChB,WAAW,EAAE,GAAG,CAAC,IAAI;gBACrB,cAAc,EAAE,UAAU;gBAC1B,QAAQ;gBACR,GAAG,CAAC,YAAY,CAAC,OAAO,KAAK,IAAI,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,IAAa,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;aACrE,CAAC,CAAC;QACL,CAAC;QAED,IAAI,OAAO,EAAE,CAAC;YACZ,OAAO,CAAC,GAAG,CACT,6CAA6C,IAAA,yBAAiB,EAAC,MAAM,EAAE,cAAc,CAAC,KAAK,cAAc,CAAC,MAAM,WAAW,CAC5H,CAAC;QACJ,CAAC;QACD,MAAM,IAAA,qBAAW,EAAC,MAAM,EAAE,cAAc,CAAC,CAAC;QAE1C,IAAI,eAAe,EAAE,CAAC;YACpB,MAAM,YAAY,GAAG,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;YACvD,IAAI,OAAO,EAAE,CAAC;gBACZ,OAAO,CAAC,GAAG,CACT,6CAA6C,IAAA,yBAAiB,EAAC,SAAS,EAAE,cAAc,CAAC,KAAK,YAAY,CAAC,MAAM,SAAS,CAC3H,CAAC;YACJ,CAAC;YACD,MAAM,IAAA,0BAAc,EAAC,SAAS,EAAE,YAAY,CAAC,CAAC;QAChD,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;GAGG;AACI,KAAK,UAAU,WAAW,CAAC,SAAmB,EAAE,OAAiB;IACtE,KAAK,MAAM,QAAQ,IAAI,SAAS,EAAE,CAAC;QACjC,IAAI,CAAC,iBAAE,CAAC,UAAU,CAAC,QAAQ,CAAC;YAAE,SAAS;QACvC,IAAI,OAAO,EAAE,CAAC;YACZ,OAAO,CAAC,GAAG,CAAC,oCAAoC,IAAA,yBAAiB,EAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;QACjF,CAAC;QACD,IAAI,CAAC;YACH,iBAAE,CAAC,SAAS,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;YAC9B,iBAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC;QAC1B,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,oDAAoD;YACpD,IAAI,OAAO,EAAE,CAAC;gBACZ,OAAO,CAAC,KAAK,CACX,uCAAuC,IAAA,yBAAiB,EAAC,QAAQ,CAAC,KAAK,KAAK,EAAE,CAC/E,CAAC;YACJ,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC;AAED;;GAEG;AACI,KAAK,UAAU,QAAQ,CAAC,YAAsB;IACnD,MAAM,WAAW,CAAC,YAAY,CAAC,CAAC;AAClC,CAAC"}

package/dist/fileset/markers.d.ts

@@ -1,13 +1,15 @@
 import { ManagedFileMetadata } from '../types';
 /**
  * Read all managed file entries from a .filedist marker file.
- * Format: path|packageName|packageVersion — one row per file, no header.
+ * Format: path|packageName|packageVersion[|kind[|checksum[|mutable]]]
  * Pipe is used as separator so file paths containing commas are handled safely.
+ * Fields beyond the first three are optional for backward compatibility.
  */
 export declare function readMarker(markerFilePath: string): Promise<ManagedFileMetadata[]>;
 /**
  * Write managed file entries to a .filedist marker file.
- * Format: path|packageName|packageVersion — one row per file, no header.
+ * Format: path|packageName|packageVersion[|kind[|checksum[|mutable]]]
+ * Trailing empty columns are omitted for backward compatibility.
  * Makes the file read-only after writing.
  */
 export declare function writeMarker(markerFilePath: string, entries: ManagedFileMetadata[]): Promise<void>;

package/dist/fileset/markers.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"markers.d.ts","sourceRoot":"","sources":["../../src/fileset/markers.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,mBAAmB,EAAE,MAAM,UAAU,CAAC;AAK/C;;;;GAIG;AACH,wBAAsB,UAAU,CAAC,cAAc,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,EAAE,CAAC,CAevF;AAED;;;;GAIG;AACH,wBAAsB,WAAW,CAC/B,cAAc,EAAE,MAAM,EACtB,OAAO,EAAE,mBAAmB,EAAE,GAC7B,OAAO,CAAC,IAAI,CAAC,CAqBf;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAEpD;AAED;;GAEG;AACH,wBAAsB,mBAAmB,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,EAAE,CAAC,CAE3F"}
+{"version":3,"file":"markers.d.ts","sourceRoot":"","sources":["../../src/fileset/markers.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,mBAAmB,EAAE,MAAM,UAAU,CAAC;AAK/C;;;;;GAKG;AACH,wBAAsB,UAAU,CAAC,cAAc,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,EAAE,CAAC,CAiBvF;AAED;;;;;GAKG;AACH,wBAAsB,WAAW,CAC/B,cAAc,EAAE,MAAM,EACtB,OAAO,EAAE,mBAAmB,EAAE,GAC7B,OAAO,CAAC,IAAI,CAAC,CAgCf;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAEpD;AAED;;GAEG;AACH,wBAAsB,mBAAmB,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,EAAE,CAAC,CAE3F"}

package/dist/fileset/markers.js

@@ -13,8 +13,9 @@ const utils_1 = require("../utils");
 const constants_1 = require("./constants");
 /**
  * Read all managed file entries from a .filedist marker file.
- * Format: path|packageName|packageVersion — one row per file, no header.
+ * Format: path|packageName|packageVersion[|kind[|checksum[|mutable]]]
  * Pipe is used as separator so file paths containing commas are handled safely.
+ * Fields beyond the first three are optional for backward compatibility.
  */
 async function readMarker(markerFilePath) {
     if (!node_fs_1.default.existsSync(markerFilePath)) {
@@ -29,12 +30,15 @@ async function readMarker(markerFilePath) {
             packageName: fields[1] ?? '',
             packageVersion: fields[2] ?? '',
             kind: fields[3] === 'symlink' ? 'symlink' : 'file',
+            ...(fields[4] ? { checksum: fields[4] } : {}),
+            ...(fields[5] === 'mutable' ? { mutable: true } : {}),
         };
     });
 }
 /**
  * Write managed file entries to a .filedist marker file.
- * Format: path|packageName|packageVersion — one row per file, no header.
+ * Format: path|packageName|packageVersion[|kind[|checksum[|mutable]]]
+ * Trailing empty columns are omitted for backward compatibility.
  * Makes the file read-only after writing.
  */
 async function writeMarker(markerFilePath, entries) {
@@ -51,8 +55,18 @@ async function writeMarker(markerFilePath, entries) {
         return;
     }
     const rows = entries.map((e) => {
-        if (e.kind === 'symlink') {
-            return `${e.path}|${e.packageName}|${e.packageVersion}|symlink`;
+        const kindField = e.kind === 'symlink' ? 'symlink' : '';
+        const checksumField = e.checksum ?? '';
+        const mutableField = e.mutable ? 'mutable' : '';
+        // Include only as many trailing fields as needed (omit trailing empty columns)
+        if (mutableField) {
+            return `${e.path}|${e.packageName}|${e.packageVersion}|${kindField}|${checksumField}|${mutableField}`;
+        }
+        if (checksumField) {
+            return `${e.path}|${e.packageName}|${e.packageVersion}|${kindField}|${checksumField}`;
+        }
+        if (kindField) {
+            return `${e.path}|${e.packageName}|${e.packageVersion}|${kindField}`;
         }
         return `${e.path}|${e.packageName}|${e.packageVersion}`;
     });

package/dist/fileset/markers.js.map

@@ -1 +1 @@
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+{"version":3,"file":"markers.js","sourceRoot":"","sources":["../../src/fileset/markers.ts"],"names":[],"mappings":";;;;;AAcA,gCAiBC;AAQD,kCAmCC;AAKD,gCAEC;AAKD,kDAEC;AAxFD,sDAAyB;AACzB,0DAA6B;AAG7B,oCAAqC;AAErC,2CAA0C;AAE1C;;;;;GAKG;AACI,KAAK,UAAU,UAAU,CAAC,cAAsB;IACrD,IAAI,CAAC,iBAAE,CAAC,UAAU,CAAC,cAAc,CAAC,EAAE,CAAC;QACnC,OAAO,EAAE,CAAC;IACZ,CAAC;IACD,MAAM,OAAO,GAAG,iBAAE,CAAC,YAAY,CAAC,cAAc,EAAE,MAAM,CAAC,CAAC;IACxD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;IACvE,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;QACxB,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QAC/B,OAAO;YACL,IAAI,EAAE,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE;YACrB,WAAW,EAAE,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE;YAC5B,cAAc,EAAE,MAAM,CAAC,CAAC,CAAC,IAAI,EAAE;YAC/B,IAAI,EAAE,MAAM,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM;YAClD,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YAC7C,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,IAAa,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;SAC/D,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;;;;GAKG;AACI,KAAK,UAAU,WAAW,CAC/B,cAAsB,EACtB,OAA8B;IAE9B,IAAA,iBAAS,EAAC,mBAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC;IACxC,qCAAqC;IACrC,IAAI,iBAAE,CAAC,UAAU,CAAC,cAAc,CAAC,EAAE,CAAC;QAClC,iBAAE,CAAC,SAAS,CAAC,cAAc,EAAE,KAAK,CAAC,CAAC;IACtC,CAAC;IACD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzB,sBAAsB;QACtB,IAAI,iBAAE,CAAC,UAAU,CAAC,cAAc,CAAC,EAAE,CAAC;YAClC,iBAAE,CAAC,UAAU,CAAC,cAAc,CAAC,CAAC;QAChC,CAAC;QACD,OAAO;IACT,CAAC;IACD,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;QAC7B,MAAM,SAAS,GAAG,CAAC,CAAC,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC;QACxD,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,IAAI,EAAE,CAAC;QACvC,MAAM,YAAY,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC;QAEhD,+EAA+E;QAC/E,IAAI,YAAY,EAAE,CAAC;YACjB,OAAO,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,WAAW,IAAI,CAAC,CAAC,cAAc,IAAI,SAAS,IAAI,aAAa,IAAI,YAAY,EAAE,CAAC;QACxG,CAAC;QACD,IAAI,aAAa,EAAE,CAAC;YAClB,OAAO,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,WAAW,IAAI,CAAC,CAAC,cAAc,IAAI,SAAS,IAAI,aAAa,EAAE,CAAC;QACxF,CAAC;QACD,IAAI,SAAS,EAAE,CAAC;YACd,OAAO,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,WAAW,IAAI,CAAC,CAAC,cAAc,IAAI,SAAS,EAAE,CAAC;QACvE,CAAC;QACD,OAAO,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,WAAW,IAAI,CAAC,CAAC,cAAc,EAAE,CAAC;IAC1D,CAAC,CAAC,CAAC;IACH,iBAAE,CAAC,aAAa,CAAC,cAAc,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IACjE,iBAAE,CAAC,SAAS,CAAC,cAAc,EAAE,KAAK,CAAC,CAAC;AACtC,CAAC;AAED;;GAEG;AACH,SAAgB,UAAU,CAAC,SAAiB;IAC1C,OAAO,mBAAI,CAAC,IAAI,CAAC,SAAS,EAAE,uBAAW,CAAC,CAAC;AAC3C,CAAC;AAED;;GAEG;AACI,KAAK,UAAU,mBAAmB,CAAC,SAAiB;IACzD,OAAO,UAAU,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC;AAC3C,CAAC"}

package/dist/package/action-extract.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"action-extract.d.ts","sourceRoot":"","sources":["../../src/package/action-extract.ts"],"names":[],"mappings":"AAIA,OAAO,EAGL,aAAa,EACb,mBAAmB,EAEpB,MAAM,UAAU,CAAC;AAkBlB,MAAM,MAAM,cAAc,GAAG,mBAAmB,GAAG;IACjD,UAAU,CAAC,EAAE,CAAC,KAAK,EAAE,aAAa,KAAK,IAAI,CAAC;CAC7C,CAAC;AAEF,MAAM,MAAM,aAAa,GAAG;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CACjB,CAAC;AAEF;;;;;;;GAOG;AAEH,wBAAsB,aAAa,CAAC,OAAO,EAAE,cAAc,GAAG,OAAO,CAAC,aAAa,CAAC,CAoOnF"}
+{"version":3,"file":"action-extract.d.ts","sourceRoot":"","sources":["../../src/package/action-extract.ts"],"names":[],"mappings":"AAIA,OAAO,EAGL,aAAa,EACb,mBAAmB,EAEpB,MAAM,UAAU,CAAC;AAkBlB,MAAM,MAAM,cAAc,GAAG,mBAAmB,GAAG;IACjD,UAAU,CAAC,EAAE,CAAC,KAAK,EAAE,aAAa,KAAK,IAAI,CAAC;CAC7C,CAAC;AAEF,MAAM,MAAM,aAAa,GAAG;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CACjB,CAAC;AAEF;;;;;;;GAOG;AAEH,wBAAsB,aAAa,CAAC,OAAO,EAAE,cAAc,GAAG,OAAO,CAAC,aAAa,CAAC,CA0OnF"}

package/dist/package/action-extract.js

@@ -43,7 +43,7 @@ async function actionExtract(options) {
             console.log(`[verbose] actionExtract: resolved ${resolvedFiles.length} desired file(s)`);
         }
         // ── Phase 2: Calculate diff ──────────────────────────────────────────────
-        const diff = await (0, calculate_diff_1.calculateDiff)(resolvedFiles, verbose, cwd, relevantPackagesByOutputDir);
+        const diff = await (0, calculate_diff_1.calculateDiff)(resolvedFiles, verbose, cwd, relevantPackagesByOutputDir, true);
         if (verbose) {
             console.log(`[verbose] actionExtract: diff ok=${diff.ok.length} missing=${diff.missing.length}` +
                 ` conflict=${diff.conflict.length} extra=${diff.extra.length}`);
@@ -60,7 +60,7 @@ async function actionExtract(options) {
             for (const entry of fileConflictEntries) {
                 const desired = entry.desired;
                 const isUnmanagedConflict = !entry.existing && desired.managed;
-                if (!desired.ignoreIfExisting && !desired.force && isUnmanagedConflict) {
+                if (!desired.mutable && !desired.force && isUnmanagedConflict) {
                     throw new Error(`Conflict: file "${entry.relPath}" in "${entry.outputDir}" exists and is not managed` +
                         ` by filedist.\nUse --force to overwrite or --managed=false to skip.`);
                 }
@@ -71,7 +71,7 @@ async function actionExtract(options) {
         result.deleted = diff.extra.filter((entry) => (0, symlinks_1.isManagedFileEntry)(entry.existing) && !noSyncOutputDirs.has(entry.outputDir)).length;
         for (const entry of fileConflictEntries) {
             const desired = entry.desired;
-            if (desired.ignoreIfExisting || !desired.managed) {
+            if (desired.mutable || !desired.managed) {
                 result.skipped++;
             }
             else {
@@ -140,7 +140,7 @@ async function actionExtract(options) {
         for (const entry of fileConflictEntries) {
             const desired = entry.desired;
             // managed=false: existing file is user-owned, leave it untouched
-            if (desired.ignoreIfExisting || !desired.managed) {
+            if (desired.mutable || !desired.managed) {
                 onProgress?.({
                     type: 'file-skipped',
                     packageName: desired.packageName,
@@ -227,23 +227,32 @@ async function updateOutputDirMetadata(outputDir, diff, resolvedFiles, desiredSy
     const addedEntries = [
         ...diff.missing
             .filter((e) => e.outputDir === outputDir && e.desired?.managed)
-            .map((e) => ({
-            path: e.relPath,
-            packageName: e.desired.packageName,
-            packageVersion: e.desired.packageVersion,
-            kind: 'file',
-        })),
+            .map((e) => {
+            const destPath = node_path_1.default.join(outputDir, e.relPath);
+            const checksumValue = node_fs_1.default.existsSync(destPath) ? (0, utils_1.hashFileSync)(destPath) : '';
+            return {
+                path: e.relPath,
+                packageName: e.desired.packageName,
+                packageVersion: e.desired.packageVersion,
+                kind: 'file',
+                ...(checksumValue ? { checksum: checksumValue } : {}),
+                ...(e.desired.mutable ? { mutable: true } : {}),
+            };
+        }),
         ...diff.conflict
-            .filter((e) => e.outputDir === outputDir &&
-            !!e.desired &&
-            e.desired.managed &&
-            !e.desired.ignoreIfExisting)
-            .map((e) => ({
-            path: e.relPath,
-            packageName: e.desired.packageName,
-            packageVersion: e.desired.packageVersion,
-            kind: 'file',
-        })),
+            .filter((e) => e.outputDir === outputDir && !!e.desired && e.desired.managed && !e.desired.mutable)
+            .map((e) => {
+            const destPath = node_path_1.default.join(outputDir, e.relPath);
+            const checksumValue = node_fs_1.default.existsSync(destPath) ? (0, utils_1.hashFileSync)(destPath) : '';
+            return {
+                path: e.relPath,
+                packageName: e.desired.packageName,
+                packageVersion: e.desired.packageVersion,
+                kind: 'file',
+                ...(checksumValue ? { checksum: checksumValue } : {}),
+                ...(e.desired.mutable ? { mutable: true } : {}),
+            };
+        }),
     ];
     const currentRelevantPackages = relevantPackages ?? new Set(resolvedFiles.map((file) => file.packageName));
     // Merge: keep existing (minus deleted + newly updated), then add new entries

package/dist/package/action-extract.js.map

@@ -1 +1 @@
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package/dist/package/calculate-diff.d.ts

@@ -8,5 +8,5 @@ import { ResolvedFile, DiffResult } from '../types';
  *
  * @returns DiffResult classifying each file as ok, missing, extra, or conflict.
  */
-export declare function calculateDiff(resolvedFiles: ResolvedFile[], verbose?: boolean, cwd?: string, relevantPackagesByOutputDir?: Map<string, Set<string>>): Promise<DiffResult>;
+export declare function calculateDiff(resolvedFiles: ResolvedFile[], verbose?: boolean, cwd?: string, relevantPackagesByOutputDir?: Map<string, Set<string>>, compareWithSource?: boolean): Promise<DiffResult>;
 //# sourceMappingURL=calculate-diff.d.ts.map

package/dist/package/calculate-diff.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"calculate-diff.d.ts","sourceRoot":"","sources":["../../src/package/calculate-diff.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,YAAY,EAAE,UAAU,EAAuB,MAAM,UAAU,CAAC;AAQzE;;;;;;;;GAQG;AACH,wBAAsB,aAAa,CACjC,aAAa,EAAE,YAAY,EAAE,EAC7B,OAAO,CAAC,EAAE,OAAO,EACjB,GAAG,CAAC,EAAE,MAAM,EACZ,2BAA2B,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC,GACrD,OAAO,CAAC,UAAU,CAAC,CAyCrB"}
+{"version":3,"file":"calculate-diff.d.ts","sourceRoot":"","sources":["../../src/package/calculate-diff.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,YAAY,EAAE,UAAU,EAAuB,MAAM,UAAU,CAAC;AAQzE;;;;;;;;GAQG;AACH,wBAAsB,aAAa,CACjC,aAAa,EAAE,YAAY,EAAE,EAC7B,OAAO,CAAC,EAAE,OAAO,EACjB,GAAG,CAAC,EAAE,MAAM,EACZ,2BAA2B,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC,EACtD,iBAAiB,CAAC,EAAE,OAAO,GAC1B,OAAO,CAAC,UAAU,CAAC,CA0CrB"}

package/dist/package/calculate-diff.js

@@ -5,6 +5,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.calculateDiff = calculateDiff;
 /* eslint-disable no-console */
+const node_crypto_1 = __importDefault(require("node:crypto"));
 const node_fs_1 = __importDefault(require("node:fs"));
 const node_path_1 = __importDefault(require("node:path"));
 const gitignore_1 = require("../fileset/gitignore");
@@ -21,7 +22,7 @@ const symlinks_1 = require("./symlinks");
  *
  * @returns DiffResult classifying each file as ok, missing, extra, or conflict.
  */
-async function calculateDiff(resolvedFiles, verbose, cwd, relevantPackagesByOutputDir) {
+async function calculateDiff(resolvedFiles, verbose, cwd, relevantPackagesByOutputDir, compareWithSource) {
     const result = { ok: [], missing: [], extra: [], conflict: [] };
     if (resolvedFiles.length === 0 &&
         (!relevantPackagesByOutputDir || relevantPackagesByOutputDir.size === 0)) {
@@ -39,7 +40,7 @@ async function calculateDiff(resolvedFiles, verbose, cwd, relevantPackagesByOutp
         ...(relevantPackagesByOutputDir?.keys() ?? []),
     ]);
     for (const outputDir of outputDirs) {
-        await appendOutputDirDiff(outputDir, byOutputDir.get(outputDir) ?? [], result, relevantPackagesByOutputDir?.get(outputDir));
+        await appendOutputDirDiff(outputDir, byOutputDir.get(outputDir) ?? [], result, relevantPackagesByOutputDir?.get(outputDir), compareWithSource);
         if (verbose) {
             console.log(`[verbose] calculateDiff: ${(0, utils_1.formatDisplayPath)(outputDir, cwd)}: ` +
                 `ok=${result.ok.length} missing=${result.missing.length} ` +
@@ -48,7 +49,7 @@ async function calculateDiff(resolvedFiles, verbose, cwd, relevantPackagesByOutp
     }
     return result;
 }
-async function appendOutputDirDiff(outputDir, desiredFiles, result, relevantPackages) {
+async function appendOutputDirDiff(outputDir, desiredFiles, result, relevantPackages, compareWithSource) {
     const existingMarker = await (0, markers_1.readOutputDirMarker)(outputDir);
     const managedByPath = new Map(existingMarker.map((m) => [m.path, m]));
     const desiredSymlinks = (0, symlinks_1.collectManagedSymlinkTargets)(outputDir, desiredFiles);
@@ -59,7 +60,7 @@ async function appendOutputDirDiff(outputDir, desiredFiles, result, relevantPack
     const gitignorePaths = (0, gitignore_1.readManagedGitignoreEntries)(outputDir);
     const outputRelevantPackages = relevantPackages ?? new Set(desiredFiles.map((f) => f.packageName));
     for (const desired of desiredFiles) {
-        await classifyDesiredFile(desired, outputDir, managedByPath, gitignorePaths, result);
+        await classifyDesiredFile(desired, outputDir, managedByPath, gitignorePaths, result, compareWithSource);
     }
     for (const desiredSymlink of desiredSymlinks) {
         classifyDesiredSymlink(desiredSymlink, outputDir, managedByPath, result);
@@ -121,8 +122,16 @@ function classifyDesiredSymlink(desiredSymlink, outputDir, managedByPath, result
 /**
  * Classify a single desired file against the current output directory state.
  * Appends to the appropriate result bucket (ok, missing, or conflict).
+ *
+ * When compareWithSource=true (used by action-extract), content is compared
+ * against the package source (with content replacements applied). This detects
+ * when the package has been updated since the last extraction.
+ *
+ * When compareWithSource=false (used by action-check), content is compared
+ * against the stored checksum in the marker. This detects tampering without
+ * requiring access to the source package.
  */
-async function classifyDesiredFile(desired, outputDir, managedByPath, gitignorePaths, result) {
+async function classifyDesiredFile(desired, outputDir, managedByPath, gitignorePaths, result, compareWithSource) {
     const destPath = node_path_1.default.join(outputDir, desired.relPath);
     const destExists = node_fs_1.default.existsSync(destPath);
     if (!destExists) {
@@ -130,24 +139,34 @@ async function classifyDesiredFile(desired, outputDir, managedByPath, gitignoreP
         return;
     }
     const conflictReasons = [];
-    // Content check
-    let srcHash;
-    try {
-        if (desired.contentReplacements.length > 0) {
-            const srcContent = node_fs_1.default.readFileSync(desired.sourcePath, 'utf8');
-            const transformed = (0, content_replacements_1.applyContentReplacementsToBuffer)(srcContent, desired.contentReplacements);
-            srcHash = (0, utils_1.hashBuffer)(transformed);
+    const existingEntry = managedByPath.get(desired.relPath);
+    if (compareWithSource) {
+        // Extraction mode: compare disk against package source (with replacements).
+        // Mutable files are allowed to diverge from source — skip content check.
+        if (!existingEntry?.mutable) {
+            const sourceHash = await hashSrcWithReplacements(desired.sourcePath, desired.contentReplacements);
+            const destHash = await (0, utils_1.hashFile)(destPath);
+            if (sourceHash !== destHash)
+                conflictReasons.push('content');
+        }
+    }
+    else {
+        // Check mode: compare disk against stored checksum (no source package needed).
+        // Mutable files are allowed to change locally — skip content verification.
+        // Files with no stored checksum cannot be verified — reported as no-checksum conflict.
+        if (existingEntry?.mutable) {
+            // File is intentionally mutable (e.g. extracted with mutable option); skip content check
+        }
+        else if (existingEntry?.checksum) {
+            const destHash = await (0, utils_1.hashFile)(destPath);
+            if (existingEntry.checksum !== destHash)
+                conflictReasons.push('content');
         }
         else {
-            srcHash = await (0, utils_1.hashFile)(desired.sourcePath);
+            // No stored checksum: marker is from an old extraction; re-extract to repair
+            conflictReasons.push('no-checksum');
         }
     }
-    catch {
-        srcHash = await (0, utils_1.hashFile)(desired.sourcePath);
-    }
-    const destHash = await (0, utils_1.hashFile)(destPath);
-    if (srcHash !== destHash)
-        conflictReasons.push('content');
     // Managed-state check
     const isManaged = managedByPath.has(desired.relPath);
     if (desired.managed !== isManaged)
@@ -162,7 +181,7 @@ async function classifyDesiredFile(desired, outputDir, managedByPath, gitignoreP
             relPath: desired.relPath,
             outputDir,
             desired,
-            existing: managedByPath.get(desired.relPath),
+            existing: existingEntry,
         });
     }
     else {
@@ -171,9 +190,20 @@ async function classifyDesiredFile(desired, outputDir, managedByPath, gitignoreP
             relPath: desired.relPath,
             outputDir,
             desired,
-            existing: managedByPath.get(desired.relPath),
+            existing: existingEntry,
             conflictReasons,
         });
     }
 }
+/**
+ * Hash a source file with content replacements applied in-memory.
+ * Used in extraction mode so the comparison is against what will be written to disk.
+ */
+async function hashSrcWithReplacements(srcPath, contentReplacements) {
+    if (contentReplacements.length === 0 || (0, utils_1.isBinaryFile)(srcPath))
+        return (0, utils_1.hashFile)(srcPath);
+    const content = node_fs_1.default.readFileSync(srcPath, 'utf8');
+    const transformed = (0, content_replacements_1.applyContentReplacementsToBuffer)(content, contentReplacements);
+    return node_crypto_1.default.createHash('sha256').update(transformed).digest('hex');
+}
 //# sourceMappingURL=calculate-diff.js.map

package/dist/package/calculate-diff.js.map

@@ -1 +1 @@
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package/dist/package/config-merge.d.ts

@@ -10,7 +10,7 @@ import { SelectorConfig, OutputConfig } from '../types';
 export declare function mergeSelectorConfig(parent: SelectorConfig, child: SelectorConfig): SelectorConfig;
 /**
  * Merge two OutputConfig objects for recursive extraction.
- * - force, keepExisting, gitignore, managed, noSync, dryRun: caller value overrides child
+ * - force, mutable, gitignore, managed, noSync, dryRun: caller value overrides child
  * - path: concatenated (parent/child), undefined treated as '.'
  * - symlinks: appended (parent + child)
  * - contentReplacements: appended (parent + child)

package/dist/package/config-merge.js

@@ -36,7 +36,7 @@ function mergeSelectorConfig(parent, child) {
 }
 /**
  * Merge two OutputConfig objects for recursive extraction.
- * - force, keepExisting, gitignore, managed, noSync, dryRun: caller value overrides child
+ * - force, mutable, gitignore, managed, noSync, dryRun: caller value overrides child
  * - path: concatenated (parent/child), undefined treated as '.'
  * - symlinks: appended (parent + child)
  * - contentReplacements: appended (parent + child)
@@ -50,7 +50,7 @@ function mergeOutputConfig(caller, child) {
     return {
         path: mergedPath,
         force: caller.force ?? child.force,
-        keepExisting: caller.keepExisting ?? child.keepExisting,
+        mutable: caller.mutable ?? child.mutable,
         gitignore: caller.gitignore ?? child.gitignore,
         managed: caller.managed ?? child.managed,
         noSync: caller.noSync ?? child.noSync,

package/dist/package/config-merge.js.map

@@ -1 +1 @@
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package/dist/package/resolve-files.js

@@ -203,7 +203,7 @@ function buildResolvedFile(relPath, pkgPath, packageName, packageVersion, output
         managed: output.managed !== false,
         gitignore: output.gitignore !== false,
         force: output.force ?? false,
-        ignoreIfExisting: output.keepExisting ?? false,
+        mutable: output.mutable ?? false,
         noSync: output.noSync === true,
         contentReplacements: output.contentReplacements ?? [],
         symlinks: output.symlinks ?? [],

package/dist/package/resolve-files.js.map

@@ -1 +1 @@
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package/dist/types.d.ts

@@ -57,13 +57,15 @@ export type OutputConfig = {
      */
     path?: string;
     /**
-     * Overwrite existing unmanaged files. Overridden by --force and --keep-existing.
+     * Overwrite existing unmanaged files. Cannot be combined with mutable.
      */
     force?: boolean;
     /**
      * Skip files that already exist; create missing ones. Cannot combine with force.
+     * Files extracted with this flag set are marked mutable in the .filedist marker,
+     * so the check command skips content verification for them.
      */
-    keepExisting?: boolean;
+    mutable?: boolean;
     /**
      * Create/update .gitignore alongside each .filedist marker.
      */
@@ -179,7 +181,7 @@ export type FileOperation = {
  */
 export type SkippedFile = {
     relPath: string;
-    reason: 'conflict' | 'keep-existing' | 'not-managed';
+    reason: 'conflict' | 'mutable' | 'unchanged' | 'not-managed';
 };
 /**
  * A file in outputDir that is not tracked by filedist and blocks extraction.
@@ -206,7 +208,8 @@ export type ExtractionMap = {
 };
 /**
  * One row in a .filedist CSV marker file.
- * Format: path|packageName|packageVersion — one row per file, no header.
+ * Format: path|packageName|packageVersion[|kind[|checksum[|mutable]]]
+ * Pipe is used as separator so file paths containing commas are handled safely.
  */
 export type ManagedFileMetadata = {
     /** Relative path from marker file directory. */
@@ -217,6 +220,16 @@ export type ManagedFileMetadata = {
     packageVersion: string;
     /** Managed path type. Omitted in marker files for regular files. */
     kind?: 'file' | 'symlink';
+    /**
+     * SHA-256 hash of the file content at extraction time (after content replacements).
+     * Used by check to detect local tampering without re-downloading the source package.
+     */
+    checksum?: string;
+    /**
+     * When true the file is allowed to change locally (e.g. extracted with mutable=true).
+     * The check command skips content verification for mutable files.
+     */
+    mutable?: boolean;
 };
 /**
  * Event emitted by extract/check/purge for UI progress reporting.
@@ -296,7 +309,7 @@ export type ResolvedFile = {
     /** Whether to overwrite an existing unmanaged file. Default: false. */
     force: boolean;
     /** Whether to skip files that already exist in the output. Default: false. */
-    ignoreIfExisting: boolean;
+    mutable: boolean;
     /** Whether extract should leave stale managed files in place for this output. */
     noSync: boolean;
     /** Content replacement rules applied to this file before comparison. */
@@ -324,7 +337,7 @@ export type DiffEntry = {
     /** Existing marker entry (absent for 'missing' entries and unmanaged conflicts). */
     existing?: ManagedFileMetadata;
     /** Reasons for conflict (only set for 'conflict' status). */
-    conflictReasons?: Array<'content' | 'managed' | 'gitignore'>;
+    conflictReasons?: Array<'content' | 'managed' | 'gitignore' | 'no-checksum'>;
 };
 /**
  * Aggregate result of calculateDiff().

package/dist/types.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "filedist",
-  "version": "0.29.0",
+  "version": "0.30.0",
   "description": "",
   "main": "dist/index.js",
   "bin": "dist/cli/bin.js",