fhirsmith 0.7.5 → 0.8.0

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Files changed (46) hide show
  1. package/CHANGELOG.md +50 -0
  2. package/README.md +8 -0
  3. package/library/html.js +4 -0
  4. package/library/languages.js +10 -0
  5. package/package.json +1 -1
  6. package/packages/package-crawler.js +106 -51
  7. package/packages/packages.js +14 -0
  8. package/publisher/publisher.js +118 -28
  9. package/registry/registry.js +99 -91
  10. package/root-bare-template.html +92 -0
  11. package/security.md +32 -0
  12. package/server.js +99 -22
  13. package/stats.js +43 -10
  14. package/tx/README.md +6 -6
  15. package/tx/cs/cs-api.js +3 -0
  16. package/tx/cs/cs-api.md +285 -0
  17. package/tx/cs/cs-loinc.js +14 -2
  18. package/tx/cs/cs-rxnorm.js +14 -10
  19. package/tx/cs/cs-snomed.js +166 -5
  20. package/tx/html/dash-metrics.liquid +147 -0
  21. package/tx/importers/import-rxnorm.module.js +4 -30
  22. package/tx/importers/readme.md +3 -1
  23. package/tx/library/canonical-resource.js +8 -0
  24. package/tx/library/conceptmap.js +3 -1
  25. package/tx/library/designations.js +4 -8
  26. package/tx/library/renderer.js +9 -9
  27. package/tx/library.js +10 -4
  28. package/tx/ocl/cm-ocl.cjs +185 -65
  29. package/tx/ocl/cs-ocl.cjs +69 -50
  30. package/tx/ocl/jobs/background-queue.cjs +0 -8
  31. package/tx/ocl/mappers/concept-mapper.cjs +13 -3
  32. package/tx/ocl/shared/patches.cjs +1 -0
  33. package/tx/ocl/vs-ocl.cjs +137 -157
  34. package/tx/operation-context.js +3 -3
  35. package/tx/provider.js +4 -3
  36. package/tx/sct/structures.js +5 -0
  37. package/tx/tx-html.js +36 -9
  38. package/tx/tx.fhir.org.yml +1 -1
  39. package/tx/tx.js +34 -11
  40. package/tx/vs/vs-database.js +127 -6
  41. package/tx/vs/vs-vsac.js +98 -3
  42. package/tx/workers/search.js +2 -1
  43. package/tx/workers/translate.js +39 -14
  44. package/tx/workers/validate.js +3 -3
  45. package/utilities/dashboard.html +274 -0
  46. package/xig/xig.js +171 -9
@@ -0,0 +1,285 @@
1
+ # CodeSystem Provider API
2
+
3
+ ## Introduction
4
+
5
+ The CodeSystem Provider API defines the contract between the FHIR terminology server and the
6
+ individual code system implementations that back it. It consists of two abstract base classes:
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+
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+ - **`CodeSystemProvider`** — represents a live, per-request provider for a specific code system
9
+ (bound to an `OperationContext`). One instance is created per request.
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+ - **`CodeSystemFactoryProvider`** — a long-lived factory that the server holds in memory and
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+ uses to construct `CodeSystemProvider` instances on demand.
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+
13
+ Implementors subclass `CodeSystemProvider` and override the methods marked *must override*.
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+ The remaining methods have sensible defaults that can optionally be overridden to improve
15
+ fidelity or performance.
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+
17
+ ### OperationContext
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+
19
+ Every `CodeSystemProvider` is constructed with an `OperationContext` that carries
20
+ per-request state: the requested languages (`opContext.langs`), a usage tracker, and other
21
+ request-scoped information. Providers must store and consult this context when making
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+ language-sensitive decisions.
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+
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+ ### Supplements
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+
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+ A provider may be constructed with an array of `CodeSystem` supplement resources. These are
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+ FHIR CodeSystem resources with `content = supplement`, and they supply additional displays and
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+ designations for codes that exist in the base code system. The base class provides helper
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+ methods (`_displayFromSupplements`, `_listSupplementDesignations`, `_hasAnySupplementDisplays`)
30
+ that implementors can call from their `display()` and `designations()` overrides.
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+
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+ ### Codes and Contexts
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+
34
+ Many methods accept either a raw `string` code or a `CodeSystemProviderContext` — an opaque
35
+ handle returned by `locate()` and the iteration/filter machinery. Passing a context instead
36
+ of a string allows implementations to avoid redundant lookups; the pattern is to locate a
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+ concept once, obtain a context, and then pass that context to subsequent property queries.
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+
39
+ ---
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+
41
+ ## Metadata
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+
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+ These methods describe the code system as a whole. All are synchronous.
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+
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+ ### Required overrides
46
+
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+ | Method | Returns | Description |
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+ |---|---|---|
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+ | `system()` | `string` | The canonical URI of the code system (e.g. `http://loinc.org`). |
50
+ | `version()` | `string` | The version of the code system. |
51
+ | `description()` | `string` | A human-readable description of the code system. |
52
+ | `totalCount()` | `integer` | The total number of concepts in the code system. |
53
+
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+ ### Provided (with defaults)
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+
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+ | Method | Default | Description |
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+ |---|---|---|
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+ | `name()` | `system()` + `\|` + `version()` | The versioned URI for the code system. Returns `system()` alone if there is no version. |
59
+ | `vurl()` | Same as `name()` | Alias for the versioned URI. |
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+ | `defLang()` | `'en'` | The default language for displays in this code system. |
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+ | `contentMode()` | `CodeSystemContentMode.Complete` | Whether the code system is complete, a fragment, etc. |
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+ | `expandLimitation()` | `0` | A cap on expansion size (e.g. for CPT). `0` means no limit. |
63
+ | `sourcePackage()` | `null` | The NPM package that contributed this code system, if known. |
64
+ | `propertyDefinitions()` | `null` | The set of defined properties; override to expose them. |
65
+ | `isNotClosed()` | `false` | Return `true` for grammar-based systems (e.g. UCUM) that cannot be fully enumerated. |
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+ | `isCaseSensitive()` | `true` | Whether code comparisons are case-sensitive. |
67
+ | `hasParents()` | `false` | Whether the code system has a concept hierarchy. |
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+ | `specialEnumeration()` | `null` | Override to nominate a substitute enumeration (used by UCUM). |
69
+ | `listFeatures()` | `null` | Return applicable server features. |
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+ | `status()` | `{}` | Return status metadata: `{ status, standardsStatus, experimental }`. |
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+ | `versionAlgorithm()` | `null` | The algorithm used for version comparison (e.g. `'semver'`, `'date'`). |
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+ | `versionNeeded()` | `false` | Whether a version must be specified when using this code system. |
73
+ | `valueSet()` | `null` | The implicit value set URI for this code system, if any. |
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+ | `versionIsMoreDetailed(check, actual)` | `false` | Return `true` if `actual` is a more specific version than `check` (used by SCT edition handling). |
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+ | `hasSupplement(url)` | — | Returns `true` if the named supplement is in scope. |
76
+ | `listSupplements()` | — | Returns the versioned URIs of all supplements in scope. |
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+ | `hasAnyDisplays(languages)` | — | Returns `true` if there are displays available in the requested languages. |
78
+
79
+ ---
80
+
81
+ ## Code Properties
82
+
83
+ These methods return information about an individual concept. Each accepts either a raw
84
+ `string` code or a `CodeSystemProviderContext` obtained from `locate()`.
85
+ All are `async`.
86
+
87
+ ### Required overrides
88
+
89
+ | Method | Returns | Description |
90
+ |---|---|---|
91
+ | `code(code)` | `string` | Returns the canonical form of the code (may normalise case, whitespace, etc.). |
92
+ | `display(code)` | `string` | The best available display for the concept given the languages in `opContext.langs`. Should consult supplements via `_displayFromSupplements()`. |
93
+ | `definition(code)` | `string` | The definition for the concept, or `null`. |
94
+ | `designations(code, displays)` | — | Populates the `ConceptDesignations` object with all available designations across all languages. Should call `_listSupplementDesignations()` to include supplement designations. |
95
+
96
+ ### Provided (with defaults)
97
+
98
+ | Method | Default | Description |
99
+ |---|---|---|
100
+ | `isAbstract(code)` | `false` | Whether the concept is abstract (cannot be used in instances). |
101
+ | `isInactive(code)` | `false` | Whether the concept is inactive. |
102
+ | `isDeprecated(code)` | `false` | Whether the concept is deprecated. |
103
+ | `getStatus(code)` | `null` | The status string for the concept. |
104
+ | `itemWeight(code)` | `null` | The assigned item weight (used in questionnaire scoring). |
105
+ | `parent(code)` | `null` | The parent concept, for hierarchical code systems. |
106
+ | `extensions(code)` | `null` | FHIR extensions on the concept, if any. |
107
+ | `properties(code)` | `[]` | The defined properties for the concept. |
108
+ | `incompleteValidationMessage(code)` | `null` | A message explaining why validation may be incomplete (used by SCT). |
109
+ | `sameConcept(a, b)` | `false` | Returns `true` if `a` and `b` refer to the same concept (e.g. different expression forms). |
110
+ | `isDisplay(designation)` | `false` | Called for designations not already marked with a standard display use code; return `true` to treat the designation as a display. |
111
+ | `subsumesTest(codeA, codeB)` | `'not-subsumed'` | Returns one of `equivalent`, `subsumes`, `subsumed-by`, or `not-subsumed`. |
112
+ | `extendLookup(ctxt, props, params)` | — | Called during `$lookup`; add any additional properties to `params`. |
113
+
114
+ ---
115
+
116
+ ## Iteration
117
+
118
+ Iteration allows the server to enumerate all concepts in a code system, for use in value set
119
+ expansion. The pattern is:
120
+
121
+ ```js
122
+ const iter = await provider.iteratorAll();
123
+ let ctxt;
124
+ while ((ctxt = await provider.nextContext(iter)) !== null) {
125
+ const c = await provider.code(ctxt);
126
+ const d = await provider.display(ctxt);
127
+ // ...
128
+ }
129
+ ```
130
+
131
+ For hierarchical code systems, `iterator(code)` returns an iterator over the *children* of
132
+ the given concept. Pass `null` to iterate the root concepts. `iteratorAll()` iterates
133
+ everything regardless of hierarchy.
134
+
135
+ | Method | Returns | Description |
136
+ |---|---|---|
137
+ | `iterator(code)` | `CodeSystemIterator \| null` | Returns an iterator over the children of the given concept, or over the root concepts if `code` is `null`. Return `null` if iteration is not supported. |
138
+ | `iteratorAll()` | `CodeSystemIterator \| null` | Returns an iterator over all concepts. For flat code systems this delegates to `iterator(null)`; for hierarchical systems this must be overridden. |
139
+ | `nextContext(iterator)` | `CodeSystemProviderContext \| null` | Advances the iterator and returns the next concept, or `null` when exhausted. |
140
+
141
+ The default `iterator()` returns `null` (iteration not supported). The default `nextContext()`
142
+ returns `null`. Override both to support expansion.
143
+
144
+ ---
145
+
146
+ ## Filters
147
+
148
+ Filters are used when expanding value sets that use `include.filter` clauses. The filter
149
+ workflow has two phases:
150
+
151
+ **Phase 1 — preparation.** The server calls `getPrepContext(iterate)` to obtain a
152
+ `FilterExecutionContext`, then calls `filter()` once for each filter clause in the include.
153
+ After all filters have been registered, `executeFilters()` is called to obtain one or more
154
+ `FilterConceptSet` objects.
155
+
156
+ **Phase 2 — evaluation.** The server either iterates the result set
157
+ (`filterMore` / `filterConcept`) or checks membership (`filterLocate` / `filterCheck`).
158
+
159
+ ```js
160
+ const ctx = await provider.getPrepContext(true);
161
+ await provider.filter(ctx, 'concept', 'is-a', 'some-code');
162
+ const sets = await provider.executeFilters(ctx);
163
+ const set = sets[0];
164
+ while (await provider.filterMore(ctx, set)) {
165
+ const concept = await provider.filterConcept(ctx, set);
166
+ // ...
167
+ }
168
+ await provider.filterFinish(ctx);
169
+ ```
170
+
171
+ | Method | Default | Description |
172
+ |---|---|---|
173
+ | `doesFilter(prop, op, value)` | `false` | Return `true` if the given filter property/operator/value combination is supported. |
174
+ | `getPrepContext(iterate)` | Returns a `FilterExecutionContext` | Returns the shared context object that will be passed to all subsequent filter calls. |
175
+ | `filter(ctx, prop, op, value)` | *must override if filters supported* | Registers a single filter clause. |
176
+ | `searchFilter(ctx, text, sort)` | throws | Registers a free-text search filter. |
177
+ | `specialFilter(ctx, sort)` | throws if `specialEnumeration()` set | Registers a special enumeration filter (UCUM). |
178
+ | `executeFilters(ctx)` | *must override if filters supported* | Finalises filter setup and returns `FilterConceptSet[]` for iteration or membership testing. |
179
+ | `filterSize(ctx, set)` | *must override* | Returns the number of concepts in the filter set. |
180
+ | `filtersNotClosed(ctx)` | `false` | Return `true` if the filter set is open-ended (grammar-based system). |
181
+ | `filterMore(ctx, set)` | *must override* | Advances the iterator; returns `true` if there is a current concept. |
182
+ | `filterConcept(ctx, set)` | *must override* | Returns the current concept as a `CodeSystemProviderContext`. |
183
+ | `filterLocate(ctx, set, code)` | *must override* | Finds a specific code in the filter set. Returns a `CodeSystemProviderContext` if found, or an error string if not. |
184
+ | `filterCheck(ctx, set, concept)` | *must override* | Returns `true` if the concept is in the filter set, or an error string if not. |
185
+ | `filterFinish(ctx)` | no-op | Called when the filter session is complete; release any resources held. |
186
+
187
+ ### Alternative: `handlesSelecting` / `processSelection`
188
+
189
+ For large code systems where a value set selects codes from only that system, the server can
190
+ hand the entire include/exclude list to the provider in one call rather than using the filter
191
+ workflow above.
192
+
193
+ Override `handlesSelecting()` to return `true` and then implement `processSelection()`.
194
+ The method receives the full lists of includes and excludes, along with pagination parameters
195
+ if applicable, and returns `FilterConceptSet[]`.
196
+
197
+ ---
198
+
199
+ ## Lookup
200
+
201
+ Lookup supports the `$lookup` and `$validate-code` operations.
202
+
203
+ | Method | Description |
204
+ |---|---|
205
+ | `locate(code)` | Look up a code by string. Returns `{ context, message }`. If found, `context` is a `CodeSystemProviderContext` and `message` is `null`. If not found, `context` is `null` and `message` explains why. **Must override.** |
206
+ | `locateIsA(code)` | Look up a code within the scope of a parent concept. Required only if `hasParents()` returns `true`. |
207
+ | `extendLookup(ctxt, props, params)` | Called during `$lookup` to allow the provider to add extra properties to the response `Parameters`. The `props` array lists the property names requested by the client. |
208
+
209
+ The server calls `locate()` first to confirm the code exists, then uses the returned context
210
+ to call `display()`, `definition()`, `designations()`, `properties()`, `extensions()`, and
211
+ `extendLookup()` as needed to build the lookup response.
212
+
213
+ ---
214
+
215
+ ## Translations
216
+
217
+ Code systems that define implicit concept maps (for example, cross-version extension mappings)
218
+ can surface translations via the `$translate` operation.
219
+
220
+ These methods are on **`CodeSystemProvider`**:
221
+
222
+ | Method | Default | Description |
223
+ |---|---|---|
224
+ | `registerConceptMaps(list)` | no-op | Called at startup; the provider should add any implicit `ConceptMap` resources it owns to `list`. |
225
+ | `getTranslations(coding, target)` | `null` | Returns `CodeTranslation[]` mapping the given `coding` to the `target` system, or `null` if no translation is available. |
226
+
227
+ These methods are on **`CodeSystemFactoryProvider`**:
228
+
229
+ | Method | Default | Description |
230
+ |---|---|---|
231
+ | `findImplicitConceptMaps(conceptMaps, source, dest)` | `null` | Returns concept maps between `source` and `dest` that are implicitly defined by this code system. |
232
+ | `findImplicitConceptMap(url, version)` | `null` | Returns a single implicit concept map by URL and version. |
233
+
234
+ ---
235
+
236
+ ## Known Value Sets and Concept Maps
237
+
238
+ Code system providers may have built-in knowledge of value sets and concept maps that are
239
+ defined as part of the code system's specification (for example, the FHIR core code systems
240
+ ship with a number of defined value sets).
241
+
242
+ These methods are on **`CodeSystemFactoryProvider`**:
243
+
244
+ | Method | Default | Description |
245
+ |---|---|---|
246
+ | `buildKnownValueSet(url, version)` | `null` | If the factory knows of a value set at `url` (optionally at `version`), build and return it as a `ValueSet` resource. Return `null` if not known. |
247
+ | `registerSupplements()` | `[]` | Returns a list of `CodeSystem` supplement resources whose metadata is known to the factory. Content may be omitted; the server will call `fillOutSupplement()` if it needs the full content. |
248
+ | `fillOutSupplement(supplement)` | no-op | Called by the server when it needs the full content of a supplement that was registered with partial content. The factory should populate `supplement` in-place. |
249
+
250
+ ---
251
+
252
+ ## CodeSystemFactoryProvider
253
+
254
+ The factory is a long-lived singleton that the server registers at startup and holds in
255
+ memory for the lifetime of the server process. Its responsibilities are:
256
+
257
+ - Holding data loaded from disk or a database (call `load()` at startup).
258
+ - Creating per-request `CodeSystemProvider` instances via `build()`.
259
+ - Declaring implicit value sets, concept maps, and supplements.
260
+
261
+ ### Required overrides
262
+
263
+ | Method | Description |
264
+ |---|---|
265
+ | `system()` | The canonical URI of the code system. |
266
+ | `name()` | A human-readable name including version information. |
267
+ | `version()` | The version of the code system data held by this factory. |
268
+ | `defaultVersion()` | The latest known version, used when no version is requested. |
269
+ | `id()` | A short identifier for this provider (used in logging and diagnostics). |
270
+ | `build(opContext, supplements)` | Construct and return a `CodeSystemProvider` bound to the given `OperationContext` and supplements. |
271
+
272
+ ### Provided (with defaults)
273
+
274
+ | Method | Default | Description |
275
+ |---|---|---|
276
+ | `load()` | no-op | Called once at startup; load data from disk, database, or network here. |
277
+ | `nameBase()` | Delegates to `name()` | The name without version information. |
278
+ | `content()` | `'complete'` | The content mode of the code system (`complete`, `fragment`, etc.). |
279
+ | `getPartialVersion()` | Major.minor of `version()` if semver | A partial version string for flexible version matching. |
280
+ | `describeVersion(version)` | `'v' + version` | A display string for a version. |
281
+ | `useCount()` | — | The number of times `build()` has been called. |
282
+ | `recordUse()` | — | Increments the use count. |
283
+ | `iteratable()` | `false` | Return `true` if the code system supports iteration. |
284
+ | `codeLink(code)` | `undefined` | Return a URL linking to documentation for the given code, if available. |
285
+ | `close()` | no-op | Called at server shutdown; release database connections and other resources here. |
package/tx/cs/cs-loinc.js CHANGED
@@ -5,6 +5,7 @@ const { Language, Languages} = require('../../library/languages');
5
5
  const { CodeSystemFactoryProvider} = require('./cs-api');
6
6
  const { validateOptionalParameter, validateArrayParameter} = require("../../library/utilities");
7
7
  const {BaseCSServices} = require("./cs-base");
8
+ const {sqlEscapeString} = require("../../xig/xig");
8
9
 
9
10
  // Context kinds matching Pascal enum
10
11
  const LoincProviderContextKind = {
@@ -657,13 +658,17 @@ class LoincServices extends BaseCSServices {
657
658
  }
658
659
 
659
660
  async filter(filterContext, prop, op, value) {
660
-
661
-
662
661
  const filter = new LoincFilterHolder();
663
662
  await this.#executeFilterQuery(prop, op, value, filter);
664
663
  filterContext.filters.push(filter);
665
664
  }
666
665
 
666
+ async searchFilter(filterContext, filterText, sort) {
667
+ const filter = new LoincFilterHolder();
668
+ await this.#executeFilterQuery('$text', (sort ? '>' : '<'), filterText.filter, filter);
669
+ filterContext.filters.push(filter);
670
+ }
671
+
667
672
  async #executeFilterQuery(prop, op, value, filter) {
668
673
  let sql = '';
669
674
  let lsql = '';
@@ -913,6 +918,13 @@ class LoincServices extends BaseCSServices {
913
918
  WHERE CodeKey IN (SELECT CodeKey FROM Properties WHERE PropertyTypeKey = 9)
914
919
  AND CodeKey = `;
915
920
  }
921
+ } else if (prop === '$text' && (op === '>' || op === '<')) {
922
+ sql = `SELECT CodeKey as Key FROM Codes
923
+ WHERE Description like '%${sqlEscapeString(value)}%'
924
+ ORDER BY Description `+(op === '<' ? 'ASC' : 'DESC');
925
+ lsql = `SELECT COUNT(CodeKey) as Key FROM Codes
926
+ WHERE Codes.Description like '%${sqlEscapeString(value)}%'
927
+ AND TargetKey = `;
916
928
  }
917
929
 
918
930
  if (sql) {
@@ -331,20 +331,20 @@ class RxNormServices extends CodeSystemProvider {
331
331
  async doesFilter(prop, op, value) {
332
332
 
333
333
 
334
- prop = prop.toUpperCase();
334
+ let propUC = prop.toUpperCase();
335
335
 
336
336
  // TTY filters
337
- if (prop === 'TTY' && ['=', 'in'].includes(op)) {
337
+ if (propUC === 'TTY' && ['=', 'in'].includes(op)) {
338
338
  return true;
339
339
  }
340
340
 
341
341
  // STY filter
342
- if (prop === 'STY' && op === '=') {
342
+ if (propUC === 'STY' && op === '=') {
343
343
  return true;
344
344
  }
345
345
 
346
346
  // SAB filter
347
- if (prop === 'SAB' && op === '=') {
347
+ if (propUC === 'SAB' && op === '=') {
348
348
  return true;
349
349
  }
350
350
 
@@ -370,12 +370,12 @@ class RxNormServices extends CodeSystemProvider {
370
370
 
371
371
 
372
372
  const filter = new RxNormFilterHolder();
373
- prop = prop.toUpperCase();
373
+ let propUC = prop.toUpperCase();
374
374
 
375
375
  let sql = '';
376
376
  let params = {};
377
377
 
378
- if (op === 'in' && prop === 'TTY') {
378
+ if (op === 'in' && propUC === 'TTY') {
379
379
  const values = value.split(',').map(v => v.trim()).filter(v => v);
380
380
  const placeholders = values.map((_, i) => `$tty${i}`).join(',');
381
381
  sql = `AND TTY IN (${placeholders})`;
@@ -383,13 +383,13 @@ class RxNormServices extends CodeSystemProvider {
383
383
  params[`tty${i}`] = this.#sqlWrapString(val);
384
384
  });
385
385
  } else if (op === '=') {
386
- if (prop === 'STY') {
386
+ if (propUC === 'STY') {
387
387
  sql = `AND ${this.getCodeField()} IN (SELECT RXCUI FROM rxnsty WHERE TUI = $sty)`;
388
388
  params.sty = this.#sqlWrapString(value);
389
- } else if (prop === 'SAB') {
389
+ } else if (propUC === 'SAB') {
390
390
  sql = `AND ${this.getCodeField()} IN (SELECT ${this.getCodeField()} FROM rxnconso WHERE SAB = $sab)`;
391
391
  params.sab = this.#sqlWrapString(value);
392
- } else if (prop === 'TTY') {
392
+ } else if (propUC === 'TTY') {
393
393
  sql = `AND TTY = $tty`;
394
394
  params.tty = this.#sqlWrapString(value);
395
395
  } else if (this.rels.includes(prop)) {
@@ -429,7 +429,6 @@ class RxNormServices extends CodeSystemProvider {
429
429
  }
430
430
 
431
431
  async searchFilter(filterContext, filter, sort) {
432
-
433
432
 
434
433
  if (!filter || !filter.stems || filter.stems.length === 0) {
435
434
  throw new Error('Invalid search filter');
@@ -709,6 +708,11 @@ class RxNormTypeServicesFactory extends CodeSystemFactoryProvider {
709
708
  const db = new sqlite3.Database(this.dbPath);
710
709
 
711
710
  try {
711
+ await new Promise((resolve, reject) => {
712
+ db.run(`CREATE INDEX IF NOT EXISTS idx_rxnstems_cui_stem ON RXNSTEMS(CUI, stem)`,
713
+ err => err ? reject(err) : resolve());
714
+ });
715
+
712
716
  this._sharedData = {
713
717
  version: '',
714
718
  rels: [],
@@ -371,6 +371,29 @@ class SnomedServices {
371
371
  return result;
372
372
  }
373
373
 
374
+ filterInactive(state) {
375
+ const result = new SnomedFilterContext();
376
+ result.inactive = state;
377
+ return result;
378
+ }
379
+
380
+ filterModuleId(id) {
381
+ const result = new SnomedFilterContext();
382
+ let concept = this.concepts.findConcept(id);
383
+ result.moduleId = concept.index;
384
+ return result;
385
+ }
386
+
387
+ filterByProperty(prop, value) {
388
+ const result = new SnomedFilterContext();
389
+ let p = this.concepts.findConcept(prop);
390
+ let v = this.concepts.findConcept(value);
391
+ result.propProp = p.index;
392
+ result.propValue = v.index;
393
+ return result;
394
+
395
+ }
396
+
374
397
  searchFilter(searchText, includeInactive = false, exactMatch = false) {
375
398
  const result = new SnomedFilterContext();
376
399
 
@@ -765,6 +788,12 @@ class SnomedProvider extends BaseCSServices {
765
788
  this._addCodeProperty(params, 'property', 'child', code, null, description);
766
789
  }
767
790
 
791
+ const moduleId = this.sct.concepts.getModuleId(ctxt.getReference());
792
+ if (moduleId) {
793
+ const code = this.sct.getConceptId(moduleId);
794
+ this._addCodeProperty(params, 'property', 'module', code, null, null);
795
+ }
796
+
768
797
  const relationships = this.sct.getConceptRelationships(ctxt.getReference());
769
798
  let set = new Set();
770
799
  for (let relationshipRef of relationships) {
@@ -812,10 +841,25 @@ class SnomedProvider extends BaseCSServices {
812
841
  return this.sct.conceptExists(value);
813
842
  }
814
843
  }
844
+ if (prop === 'inactive') {
845
+ return op === '=' && ['true', 'false'].includes(value);
846
+ }
847
+
848
+ if (prop === 'moduleId') {
849
+ const id = this.sct.stringToIdOrZero(value);
850
+ return id !== 0n && op === '=';
851
+ }
852
+
815
853
  if (prop == 'expressions' && op == '=' && ['true', 'false'].includes(value)) {
816
854
  return true;
817
855
  }
818
856
 
857
+ const cid = this.sct.stringToIdOrZero(prop);
858
+ if (cid != 0) {
859
+ const id = this.sct.stringToIdOrZero(value);
860
+ return id !== 0n && op === '=';
861
+ }
862
+
819
863
  return false;
820
864
  }
821
865
 
@@ -851,7 +895,38 @@ class SnomedProvider extends BaseCSServices {
851
895
  return null;
852
896
  }
853
897
  default:
854
- throw new Error(`Unsupported filter operation: ${op}`);
898
+ throw new Error(`Unsupported filter operation: concept ${op} ${value}`);
899
+ }
900
+ }
901
+
902
+ if (prop === 'inactive') {
903
+ if (value !== 'true' && value !== 'false') {
904
+ throw new Error(`Invalid filter value: ${value}`);
905
+ }
906
+
907
+ switch (op) {
908
+ case '=': {
909
+ filterContext.filters.push(this.sct.filterInactive(value === 'true'));
910
+ return null;
911
+ }
912
+ default:
913
+ throw new Error(`Unsupported filter operation: inactive ${op} ${value}`);
914
+ }
915
+ }
916
+
917
+ if (prop === 'moduleId') {
918
+ const id = this.sct.stringToIdOrZero(value);
919
+ if (id === 0n) {
920
+ throw new Error(`Invalid concept ID: ${value}`);
921
+ }
922
+
923
+ switch (op) {
924
+ case '=': {
925
+ filterContext.filters.push(this.sct.filterModuleId(id));
926
+ return null;
927
+ }
928
+ default:
929
+ throw new Error(`Unsupported filter operation: moduleId ${op} ${value}`);
855
930
  }
856
931
  }
857
932
 
@@ -862,6 +937,24 @@ class SnomedProvider extends BaseCSServices {
862
937
  return null;
863
938
  }
864
939
 
940
+ const cid = this.sct.stringToIdOrZero(prop);
941
+ if (cid != 0) {
942
+
943
+ const id = this.sct.stringToIdOrZero(value);
944
+ if (id === 0n) {
945
+ throw new Error(`Invalid concept ID: ${value}`);
946
+ }
947
+
948
+ switch (op) {
949
+ case '=': {
950
+ filterContext.filters.push(this.sct.filterByProperty(cid, id));
951
+ return null;
952
+ }
953
+ default:
954
+ throw new Error(`Unsupported filter operation: ${prop} ${op} ${value}`);
955
+ }
956
+ }
957
+
865
958
  throw new Error(`Unsupported filter property: ${prop}`);
866
959
  }
867
960
 
@@ -893,7 +986,7 @@ class SnomedProvider extends BaseCSServices {
893
986
 
894
987
  async filterMore(filterContext, set) {
895
988
  set.cursor = set.cursor || 0;
896
-
989
+ this.#ensurePopulated(set);
897
990
  const size = await this.filterSize(filterContext, set);
898
991
  return set.cursor < size;
899
992
  }
@@ -927,12 +1020,27 @@ class SnomedProvider extends BaseCSServices {
927
1020
  }
928
1021
 
929
1022
  const ctxt = conceptResult.context;
930
-
931
-
932
1023
  const reference = ctxt.getReference();
933
1024
  let found = false;
934
1025
 
935
- if (set.matches && set.matches.length > 0) {
1026
+ if (set.inactive !== undefined) {
1027
+ let concept = this.sct.concepts.getConcept(reference);
1028
+ let active = (concept.flags & 0x0F) === 0;
1029
+ found = active !== set.inactive
1030
+ } else if (set.moduleId) {
1031
+ let concept = this.sct.concepts.getConcept(reference);
1032
+ let moduleId = this.sct.concepts.getModuleId(concept.index);
1033
+ found = moduleId === set.moduleId;
1034
+ } else if (set.propProp || set.propValue) {
1035
+ found = false;
1036
+ const relationships = this.sct.getConceptRelationships(reference);
1037
+ for (let relationshipRef of relationships) {
1038
+ const relationship = this.sct.relationships.getRelationship(relationshipRef);
1039
+ if (set.propProp === relationship.relType && set.propValue === relationship.target) {
1040
+ found = true;
1041
+ }
1042
+ }
1043
+ } else if (set.matches && set.matches.length > 0) {
936
1044
  found = set.matches.some(m => m.index === reference);
937
1045
  } else if (set.members && set.members.length > 0) {
938
1046
  found = set.members.some(m => m.ref === reference);
@@ -958,6 +1066,23 @@ class SnomedProvider extends BaseCSServices {
958
1066
  }
959
1067
 
960
1068
  const reference = concept.getReference();
1069
+ if (set.inactive !== undefined) {
1070
+ return this.sct.isActive(reference) !== set.inactive;
1071
+ }
1072
+
1073
+ if (set.moduleId) {
1074
+ return this.sct.concepts.getModuleId(reference) === set.moduleId;
1075
+ }
1076
+
1077
+ if (set.propProp || set.propValue) {
1078
+ const relationships = this.sct.getConceptRelationships(reference);
1079
+ for (let relationshipRef of relationships) {
1080
+ const relationship = this.sct.relationships.getRelationship(relationshipRef);
1081
+ if (set.propProp === relationship.relType && set.propValue === relationship.target) {
1082
+ return true;
1083
+ }
1084
+ }
1085
+ }
961
1086
 
962
1087
  if (set.matches && set.matches.length > 0) {
963
1088
  return set.matches.some(m => m.index === reference);
@@ -970,6 +1095,42 @@ class SnomedProvider extends BaseCSServices {
970
1095
  return false;
971
1096
  }
972
1097
 
1098
+ #ensurePopulated(set) {
1099
+ if (set.populationDone) {
1100
+ return;
1101
+ }
1102
+ if (set.inactive !== undefined && set.descendants.length === 0) {
1103
+ for (let i = 0; i < this.sct.concepts.count(); i++) {
1104
+ let concept = this.sct.concepts.getConceptByCount(i);
1105
+ let active = (concept.flags & 0x0F) === 0;
1106
+ if (active !== set.inactive) {
1107
+ set.descendants.push(concept.index);
1108
+ }
1109
+ }
1110
+ }
1111
+ if (set.moduleId) {
1112
+ for (let i = 0; i < this.sct.concepts.count(); i++) {
1113
+ let concept = this.sct.concepts.getConceptByCount(i);
1114
+ let moduleId = this.sct.concepts.getModuleId(concept.index);
1115
+ if (moduleId === set.moduleId) {
1116
+ set.descendants.push(concept.index);
1117
+ }
1118
+ }
1119
+ }
1120
+ if (set.propProp || set.propValue) {
1121
+ for (let i = 0; i < this.sct.concepts.count(); i++) {
1122
+ let concept = this.sct.concepts.getConceptByCount(i);
1123
+ const relationships = this.sct.getConceptRelationships(concept.getReference());
1124
+ for (let relationshipRef of relationships) {
1125
+ const relationship = this.sct.relationships.getRelationship(relationshipRef);
1126
+ if (set.propProp === relationship.relType && set.propValue === relationship.target) {
1127
+ set.descendants.push(concept.index);
1128
+ }
1129
+ }
1130
+ }
1131
+ }
1132
+ set.populationDone = true;
1133
+ }
973
1134
 
974
1135
  // Search filter
975
1136
  async searchFilter(filterContext, filter, sort) {