fhirpath-ts 0.0.0-bootstrap.0

package/dist/fhir/html-checks.js

@@ -0,0 +1,256 @@
+/**
+ * FHIR narrative validation for htmlChecks(): the xhtml must be well formed, use
+ * only the elements and attributes the FHIR spec allows in Narrative.div, and
+ * carry no active content. (https://hl7.org/fhir/narrative.html)
+ */
+const ALLOWED_ELEMENTS = new Set([
+    'div',
+    'p',
+    'b',
+    'i',
+    'em',
+    'strong',
+    'u',
+    's',
+    'strike',
+    'small',
+    'big',
+    'tt',
+    'sub',
+    'sup',
+    'span',
+    'br',
+    'hr',
+    'ul',
+    'ol',
+    'li',
+    'dl',
+    'dt',
+    'dd',
+    'table',
+    'caption',
+    'col',
+    'colgroup',
+    'thead',
+    'tbody',
+    'tfoot',
+    'tr',
+    'td',
+    'th',
+    'pre',
+    'blockquote',
+    'q',
+    'a',
+    'img',
+    'code',
+    'samp',
+    'kbd',
+    'var',
+    'abbr',
+    'acronym',
+    'cite',
+    'dfn',
+    'address',
+    'bdo',
+    'h1',
+    'h2',
+    'h3',
+    'h4',
+    'h5',
+    'h6',
+]);
+const VOID_ELEMENTS = new Set(['br', 'hr', 'img', 'col']);
+const ALLOWED_ATTRIBUTES = new Set([
+    'abbr',
+    'accesskey',
+    'align',
+    'alt',
+    'axis',
+    'bgcolor',
+    'border',
+    'cellhalign',
+    'cellpadding',
+    'cellspacing',
+    'cellvalign',
+    'char',
+    'charoff',
+    'charset',
+    'cite',
+    'class',
+    'colspan',
+    'compact',
+    'coords',
+    'dir',
+    'frame',
+    'headers',
+    'height',
+    'href',
+    'hreflang',
+    'hspace',
+    'id',
+    'lang',
+    'longdesc',
+    'name',
+    'nowrap',
+    'rel',
+    'rev',
+    'rowspan',
+    'rules',
+    'scope',
+    'shape',
+    'span',
+    'src',
+    'start',
+    'style',
+    'summary',
+    'tabindex',
+    'title',
+    'type',
+    'valign',
+    'value',
+    'vspace',
+    'width',
+    'xmlns',
+    'xml:id',
+    'xml:lang',
+    'xml:space',
+]);
+const TAG_PATTERN = /<!--[\s\S]*?-->|<!\[CDATA\[[\s\S]*?\]\]>|<[^>]*>|[^<]+/g;
+const OPEN_TAG = /^<([a-zA-Z][a-zA-Z0-9]*)((?:\s+[^\s=>/]+(?:\s*=\s*(?:"[^"]*"|'[^']*'))?)*)\s*(\/?)>$/;
+const CLOSE_TAG = /^<\/([a-zA-Z][a-zA-Z0-9]*)\s*>$/;
+const ATTRIBUTE = /([^\s=>/]+)(?:\s*=\s*("[^"]*"|'[^']*'))?/g;
+export function validateNarrative(xhtml) {
+    const stack = [];
+    let sawRoot = false;
+    let position = 0;
+    for (const match of xhtml.matchAll(TAG_PATTERN)) {
+        if (match.index !== position) {
+            return false;
+        }
+        position = match.index + match[0].length;
+        const token = match[0];
+        if (!token.startsWith('<')) {
+            // Text content: a stray '>' is fine, but only whitespace may sit outside the root.
+            if (stack.length === 0 && token.trim() !== '') {
+                return false;
+            }
+            // Well-formed XHTML only uses the five XML entities and numeric references;
+            // an unknown entity (e.g. &Tab;) means the document is not well-formed.
+            if (decodeEntities(token) === undefined) {
+                return false;
+            }
+            continue;
+        }
+        if (token.startsWith('<!--') || token.startsWith('<![CDATA[')) {
+            continue;
+        }
+        const close = CLOSE_TAG.exec(token);
+        if (close) {
+            const name = close[1].toLowerCase();
+            if (stack.pop() !== name) {
+                return false;
+            }
+            continue;
+        }
+        const open = OPEN_TAG.exec(token);
+        if (!open) {
+            return false;
+        }
+        const name = open[1].toLowerCase();
+        if (!ALLOWED_ELEMENTS.has(name)) {
+            return false;
+        }
+        if (stack.length === 0) {
+            if (sawRoot || name !== 'div') {
+                return false;
+            }
+            sawRoot = true;
+            if (!/xmlns\s*=\s*["']http:\/\/www\.w3\.org\/1999\/xhtml["']/.test(token)) {
+                return false;
+            }
+        }
+        if (!validAttributes(open[2])) {
+            return false;
+        }
+        const selfClosing = open[3] === '/' || VOID_ELEMENTS.has(name);
+        if (!selfClosing) {
+            stack.push(name);
+        }
+    }
+    return sawRoot && stack.length === 0 && position === xhtml.length;
+}
+function validAttributes(attributesText) {
+    for (const match of attributesText.matchAll(ATTRIBUTE)) {
+        const name = match[1].toLowerCase();
+        if (name.startsWith('on') || !ALLOWED_ATTRIBUTES.has(name)) {
+            return false;
+        }
+        const value = match[2]?.slice(1, -1) ?? '';
+        if ((name === 'href' || name === 'src') && !safeUrl(value, name)) {
+            return false;
+        }
+    }
+    return true;
+}
+const SAFE_SCHEMES = new Set(['http', 'https', 'mailto', 'tel', 'ftp', 'urn', 'cid']);
+/**
+ * Allow only inert URL schemes. Browsers entity-decode attribute values and skip
+ * control characters before resolving the scheme, so the check must see the value
+ * the way a browser does — `java&#115;cript:` is still `javascript:`.
+ */
+function safeUrl(rawValue, attributeName) {
+    const decoded = decodeEntities(rawValue);
+    if (decoded === undefined) {
+        // An unknown entity in the URL (e.g. javascript&colon;) is malformed; reject.
+        return false;
+    }
+    // eslint-disable-next-line no-control-regex -- stripping control characters is the point
+    const value = decoded.replace(/[\u0000-\u0020]/gu, '');
+    const scheme = /^([a-zA-Z][a-zA-Z0-9+.-]*):/.exec(value);
+    if (!scheme) {
+        // Relative URL or fragment: no scheme to smuggle code through.
+        return true;
+    }
+    const name = scheme[1].toLowerCase();
+    if (attributeName === 'src' && name === 'data') {
+        // Inline images are common in narratives; data: must never reach href.
+        return /^data:image\//i.test(value);
+    }
+    return SAFE_SCHEMES.has(name);
+}
+const NAMED_ENTITIES = {
+    lt: '<',
+    gt: '>',
+    amp: '&',
+    quot: '"',
+    apos: "'",
+};
+/**
+ * Resolve XML entity and numeric character references. Returns undefined when the
+ * text contains an entity XHTML does not define — those five names plus numeric
+ * references are the only well-formed forms, so anything else fails validation
+ * instead of passing through unresolved (which is how &Tab;/&colon; smuggled a
+ * javascript: URL past the scheme check).
+ */
+function decodeEntities(text) {
+    let malformed = false;
+    const decoded = text.replace(/&(?:#x([0-9a-fA-F]+)|#(\d+)|([a-zA-Z0-9]+));/g, (whole, hex, dec, named) => {
+        if (hex !== undefined) {
+            return fromCodePoint(Number.parseInt(hex, 16));
+        }
+        if (dec !== undefined) {
+            return fromCodePoint(Number.parseInt(dec, 10));
+        }
+        const resolved = NAMED_ENTITIES[named];
+        if (resolved === undefined) {
+            malformed = true;
+            return whole;
+        }
+        return resolved;
+    });
+    return malformed ? undefined : decoded;
+}
+function fromCodePoint(codePoint) {
+    return codePoint >= 0 && codePoint <= 0x10ffff ? String.fromCodePoint(codePoint) : '\uFFFD';
+}
+//# sourceMappingURL=html-checks.js.map

package/dist/fhir/html-checks.js.map

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package/dist/fhir/model-navigation.d.ts

@@ -0,0 +1,11 @@
+import type { ModelProvider } from '../model/provider.ts';
+import { type TypedValue } from '../values/typed-value.ts';
+export declare function isFhirPrimitiveType(typeName: string): boolean;
+/**
+ * Read one element with model knowledge: choice elements resolve their suffixed
+ * JSON key, primitives parse into System values (dates become Temporal, decimals
+ * become Decimal) and carry their `_field` sibling for extension/id access.
+ * Undefined when the model does not know the element.
+ */
+export declare function readModelProperty(model: ModelProvider, item: TypedValue, name: string): TypedValue[] | undefined;
+//# sourceMappingURL=model-navigation.d.ts.map

package/dist/fhir/model-navigation.d.ts.map

@@ -0,0 +1 @@
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package/dist/fhir/model-navigation.js

@@ -0,0 +1,142 @@
+import { Temporal } from "../values/datetime.js";
+import { Decimal } from "../values/decimal.js";
+import { FHIR_PRIMITIVE_TO_SYSTEM, toTypedValue } from "../values/typed-value.js";
+export function isFhirPrimitiveType(typeName) {
+    return FHIR_PRIMITIVE_TO_SYSTEM[typeName] !== undefined;
+}
+/**
+ * Read one element with model knowledge: choice elements resolve their suffixed
+ * JSON key, primitives parse into System values (dates become Temporal, decimals
+ * become Decimal) and carry their `_field` sibling for extension/id access.
+ * Undefined when the model does not know the element.
+ */
+export function readModelProperty(model, item, name) {
+    const metadata = readPrimitiveMetadata(item, name);
+    if (metadata !== undefined) {
+        return metadata;
+    }
+    const info = model.getElement(item.type, name);
+    if (!info) {
+        return undefined;
+    }
+    const container = item.value;
+    if (typeof container !== 'object' || container === null || Array.isArray(container)) {
+        return [];
+    }
+    const record = container;
+    if (info.isChoice) {
+        for (const typeName of info.types) {
+            const key = name + typeName.charAt(0).toUpperCase() + typeName.slice(1);
+            if (record[key] !== undefined && record[key] !== null) {
+                return convertValues(record[key], record[`_${key}`], typeName);
+            }
+            // A choice primitive may be present through its `_field` sibling alone,
+            // e.g. { _valueString: { extension: [...] } } with no valueString.
+            const sibling = record[`_${key}`];
+            if (sibling !== undefined && sibling !== null && isFhirPrimitiveType(typeName)) {
+                return convertValues(undefined, sibling, typeName);
+            }
+        }
+        return [];
+    }
+    const raw = record[name];
+    if (raw === undefined || raw === null) {
+        // A primitive may be present through its `_field` sibling alone.
+        const sibling = record[`_${name}`];
+        if (sibling !== undefined && sibling !== null && isFhirPrimitiveType(info.types[0])) {
+            return convertValues(undefined, sibling, info.types[0]);
+        }
+        return [];
+    }
+    return convertValues(raw, record[`_${name}`], info.types[0]);
+}
+/** `id` and `extension` on an already-navigated primitive come from its `_field` sibling. */
+function readPrimitiveMetadata(item, name) {
+    if (item.primitiveElement === undefined || (name !== 'id' && name !== 'extension')) {
+        return undefined;
+    }
+    const metadata = item.primitiveElement;
+    const value = metadata[name];
+    if (value === undefined || value === null) {
+        return [];
+    }
+    if (name === 'id') {
+        return [{ type: 'System.String', value }];
+    }
+    return (Array.isArray(value) ? value : [value]).map(extension => ({
+        type: 'FHIR.Extension',
+        value: extension,
+    }));
+}
+function convertValues(raw, sibling, typeName) {
+    if (Array.isArray(raw) || Array.isArray(sibling)) {
+        // The value and _name arrays align by index and either may be the longer one:
+        // a tail entry present only in _name is still an element (with extensions).
+        const values = Array.isArray(raw) ? raw : [];
+        const siblings = Array.isArray(sibling) ? sibling : [];
+        const result = [];
+        for (let index = 0; index < Math.max(values.length, siblings.length); index++) {
+            const converted = convertSingle(values[index], siblings[index], typeName);
+            if (converted) {
+                result.push(converted);
+            }
+        }
+        return result;
+    }
+    const converted = convertSingle(raw, sibling, typeName);
+    return converted ? [converted] : [];
+}
+function convertSingle(raw, sibling, typeName) {
+    if ((raw === undefined || raw === null) && (sibling === undefined || sibling === null)) {
+        return undefined;
+    }
+    // Element ids and primitive value elements carry System types directly.
+    if (typeName.startsWith('System.')) {
+        return raw === undefined || raw === null ? undefined : { type: typeName, value: raw };
+    }
+    const systemType = FHIR_PRIMITIVE_TO_SYSTEM[typeName];
+    if (systemType === undefined) {
+        // Complex, backbone, or resource element.
+        if (raw === undefined || raw === null) {
+            return undefined;
+        }
+        if (typeName === 'Resource' || typeName === 'DomainResource') {
+            return toTypedValue(raw);
+        }
+        return { type: `FHIR.${typeName}`, value: raw };
+    }
+    // FHIR primitives keep their FHIR type (the official type() and is() tests rely
+    // on it) while the value itself parses into the System representation.
+    const typed = { type: `FHIR.${typeName}`, value: parsePrimitive(raw, systemType) };
+    if (sibling !== undefined && sibling !== null) {
+        typed.primitiveElement = sibling;
+    }
+    return typed;
+}
+function parsePrimitive(raw, systemType) {
+    if (raw === undefined || raw === null) {
+        return undefined;
+    }
+    switch (systemType) {
+        case 'System.Date': {
+            return typeof raw === 'string' ? (Temporal.parseDate(raw) ?? raw) : raw;
+        }
+        case 'System.DateTime': {
+            return typeof raw === 'string' ? (Temporal.parseDateTime(raw) ?? raw) : raw;
+        }
+        case 'System.Time': {
+            return typeof raw === 'string' ? (Temporal.parseTime(raw) ?? raw) : raw;
+        }
+        case 'System.Decimal': {
+            const parsed = typeof raw === 'number' ? Decimal.fromNumber(raw) : Decimal.fromString(String(raw));
+            return parsed ?? raw;
+        }
+        /* v8 ignore next 3 -- R4 has no integer64 elements; kept for R5 model reuse */
+        case 'System.Long': {
+            return typeof raw === 'number' ? BigInt(raw) : raw;
+        }
+        default:
+            return raw;
+    }
+}
+//# sourceMappingURL=model-navigation.js.map

package/dist/fhir/model-navigation.js.map

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package/dist/functions/aggregate.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=aggregate.d.ts.map

package/dist/functions/aggregate.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"aggregate.d.ts","sourceRoot":"","sources":["../../src/functions/aggregate.ts"],"names":[],"mappings":""}

package/dist/functions/aggregate.js

@@ -0,0 +1,127 @@
+import { withFrame } from "../engine/context.js";
+import { FhirPathTypeError } from "../errors.js";
+import { Decimal } from "../values/decimal.js";
+import { asNumeric, widerKind, wrapNumeric } from "../values/numeric.js";
+import { alignQuantities, coerceQuantity } from "../values/quantity.js";
+import { SYSTEM_DECIMAL, SYSTEM_QUANTITY } from "../values/typed-value.js";
+import { argAt, registerFunction } from "./registry.js";
+registerFunction('aggregate', {
+    minArity: 1,
+    maxArity: 2,
+    evaluate: (context, input, args, evaluateNode) => {
+        let total = args.length === 2 ? evaluateNode(argAt(args, 1), context, input) : [];
+        input.forEach((item, index) => {
+            total = withFrame(context, { thisValue: [item], index, total }, frameContext => evaluateNode(argAt(args, 0), frameContext, [item]));
+        });
+        return total;
+    },
+});
+/** Shared by sum/min/max/avg: all items must be numeric, of a comparable kind. */
+function numericItems(name, input) {
+    let kind = 'Integer';
+    const values = input.map(item => {
+        const numeric = asNumeric(item);
+        if (!numeric) {
+            throw new FhirPathTypeError(`${name}() expects numeric values, found ${item.type}`);
+        }
+        kind = widerKind(kind, numeric.kind);
+        return numeric.value;
+    });
+    return { values, kind };
+}
+/**
+ * Quantity collections aggregate by pairwise-aligning units, exactly like
+ * repeated `+`: (1 'cm' | 3 'cm' | 1 'm').sum() = 104 'cm'. Empty when any
+ * pair of units cannot align.
+ */
+function foldQuantities(quantities, fold) {
+    let acc = quantities[0];
+    for (const quantity of quantities.slice(1)) {
+        const pair = alignQuantities(acc, quantity);
+        if (!pair) {
+            return [];
+        }
+        acc = { value: fold(pair.left, pair.right), unit: pair.unit, calendar: pair.calendar };
+    }
+    return [{ type: SYSTEM_QUANTITY, value: acc }];
+}
+function allQuantities(input) {
+    const quantities = [];
+    for (const item of input) {
+        const quantity = coerceQuantity(item);
+        if (quantity === undefined) {
+            return undefined;
+        }
+        quantities.push(quantity);
+    }
+    return quantities;
+}
+// Convenience aggregates (ballot STU). All four are empty for empty input.
+registerFunction('sum', {
+    minArity: 0,
+    maxArity: 0,
+    evaluate: (_context, input) => {
+        if (input.length === 0) {
+            return [];
+        }
+        const quantities = allQuantities(input);
+        if (quantities) {
+            return foldQuantities(quantities, (acc, next) => acc.add(next));
+        }
+        const { values, kind } = numericItems('sum', input);
+        const total = values.reduce((acc, value) => acc.add(value), Decimal.zero());
+        return [wrapNumeric(total, kind)];
+    },
+});
+function extremum(name, keep) {
+    registerFunction(name, {
+        minArity: 0,
+        maxArity: 0,
+        evaluate: (_context, input) => {
+            if (input.length === 0) {
+                return [];
+            }
+            const quantities = allQuantities(input);
+            if (quantities) {
+                return foldQuantities(quantities, (acc, next) => (keep(next.compare(acc)) ? next : acc));
+            }
+            const { values, kind } = numericItems(name, input);
+            let best = values[0];
+            for (const value of values.slice(1)) {
+                if (keep(value.compare(best))) {
+                    best = value;
+                }
+            }
+            return [wrapNumeric(best, kind)];
+        },
+    });
+}
+extremum('min', comparison => comparison < 0);
+extremum('max', comparison => comparison > 0);
+registerFunction('avg', {
+    minArity: 0,
+    maxArity: 0,
+    evaluate: (_context, input) => {
+        if (input.length === 0) {
+            return [];
+        }
+        const count = Decimal.fromString(String(input.length));
+        const quantities = allQuantities(input);
+        if (quantities) {
+            const total = foldQuantities(quantities, (acc, next) => acc.add(next));
+            if (total.length === 0) {
+                return [];
+            }
+            const sum = total[0].value;
+            const average = sum.value.divide(count);
+            /* v8 ignore next -- the divisor is the non-zero item count */
+            return average === undefined ? [] : [{ type: SYSTEM_QUANTITY, value: { ...sum, value: average } }];
+        }
+        const { values } = numericItems('avg', input);
+        const total = values.reduce((acc, value) => acc.add(value), Decimal.zero());
+        const average = total.divide(count);
+        /* v8 ignore next -- the divisor is the non-zero item count */
+        return average === undefined ? [] : [{ type: SYSTEM_DECIMAL, value: average }];
+    },
+});
+//# sourceMappingURL=aggregate.js.map

package/dist/functions/aggregate.js.map

@@ -0,0 +1 @@
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package/dist/functions/boundary.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=boundary.d.ts.map

package/dist/functions/boundary.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"boundary.d.ts","sourceRoot":"","sources":["../../src/functions/boundary.ts"],"names":[],"mappings":""}