fhir-persistence 0.1.0

package/dist/lib/repo/reference-indexer.d.ts.map

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package/dist/lib/repo/row-builder.d.ts

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+/**
+ * Row Builder
+ *
+ * Converts a FHIR resource into a database row for the main table
+ * and history table. Handles fixed columns and (future) search columns.
+ *
+ * Phase 9 MVP: populates fixed columns + content JSON only.
+ * Search column population will be added incrementally.
+ *
+ * @module fhir-persistence/repo
+ */
+import type { PersistedResource, ResourceRow, HistoryRow, OperationContext } from "./types.js";
+import type { SearchParameterImpl } from "../registry/search-parameter-registry.js";
+/**
+ * Build a main table row from a persisted FHIR resource.
+ *
+ * Populates:
+ * - Fixed columns: `id`, `content`, `lastUpdated`, `deleted`, `__version`
+ * - Meta columns: `_source`, `_profile`
+ * - (Future) Search columns via SearchParameterRegistry + FHIRPath
+ *
+ * @param resource - The persisted resource (must have `id` and `meta`).
+ * @returns A `ResourceRow` ready for SQL insertion.
+ */
+export declare function buildResourceRow(resource: PersistedResource, context?: OperationContext): ResourceRow;
+/**
+ * Build a main table row with search column values populated.
+ *
+ * Extends `buildResourceRow()` by extracting search parameter values
+ * from the resource JSON and merging them into the row.
+ *
+ * @param resource - The persisted resource.
+ * @param searchImpls - SearchParameterImpl list for this resource type.
+ * @returns A `ResourceRow` with both fixed and search columns.
+ */
+export declare function buildResourceRowWithSearch(resource: PersistedResource, searchImpls: SearchParameterImpl[], context?: OperationContext): ResourceRow;
+/**
+ * Build compartments array for a resource.
+ *
+ * Phase 18: Full compartment extraction.
+ * - Patient resources: compartment = [own ID]
+ * - Other resources: scan all reference-type search params for Patient references,
+ *   extract the Patient IDs as compartment members.
+ *
+ * @param resource - The persisted resource.
+ * @param searchImpls - Optional SearchParameterImpl list for reference extraction.
+ * @returns Array of compartment UUIDs (Patient IDs).
+ */
+export declare function buildCompartments(resource: PersistedResource, searchImpls?: SearchParameterImpl[]): string[];
+/**
+ * Build a main table row for a soft-deleted resource.
+ *
+ * Sets `deleted=true`, `content=''`, `__version=-1`.
+ * All search columns will be null (not populated).
+ *
+ * @param resourceType - The resource type.
+ * @param id - The resource ID.
+ * @param lastUpdated - The deletion timestamp.
+ * @returns A `ResourceRow` representing the deleted state.
+ */
+export declare function buildDeleteRow(resourceType: string, id: string, lastUpdated: string, context?: OperationContext): ResourceRow;
+/**
+ * Build a history table row from a persisted FHIR resource.
+ *
+ * @param resource - The persisted resource.
+ * @returns A `HistoryRow` for the history table.
+ */
+export declare function buildHistoryRow(resource: PersistedResource): HistoryRow;
+/**
+ * Build a history table row for a delete event.
+ *
+ * @param id - The resource ID.
+ * @param versionId - The versionId for this delete event.
+ * @param lastUpdated - The deletion timestamp.
+ * @returns A `HistoryRow` with empty content.
+ */
+export declare function buildDeleteHistoryRow(id: string, versionId: string, lastUpdated: string): HistoryRow;
+//# sourceMappingURL=row-builder.d.ts.map

package/dist/lib/repo/row-builder.d.ts.map

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package/dist/lib/repo/row-indexer.d.ts

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+/**
+ * Row Indexer
+ *
+ * Extracts search parameter values from FHIR resource JSON and produces
+ * column name → value pairs for the main table's search columns.
+ *
+ * Phase 14: Uses simplified property path extraction (not full FHIRPath).
+ * Full FHIRPath evaluation can be added in a future phase.
+ *
+ * @module fhir-persistence/repo
+ */
+import type { SearchParameterImpl } from "../registry/search-parameter-registry.js";
+import type { LookupTableType } from "../schema/table-schema.js";
+import type { FhirResource } from "./types.js";
+/**
+ * Search column values to merge into the main table row.
+ */
+export interface SearchColumnValues {
+    [columnName: string]: unknown;
+}
+/**
+ * Generate a deterministic UUID-like hash for a token value.
+ *
+ * Produces a v4-format UUID string from the SHA-256 hash of `system|code`.
+ * This matches Medplum's approach of using a deterministic hash for token
+ * search columns (UUID[] type).
+ */
+export declare function hashToken(system: string, code: string): string;
+/**
+ * Extract the property path for a given resource type from a FHIRPath expression.
+ *
+ * Handles:
+ * - Simple: `"Patient.birthDate"` → `["birthDate"]`
+ * - Union: `"Patient.name | Practitioner.name"` → `["name"]` (for Patient)
+ * - .where(): `"Account.subject.where(resolve() is Patient)"` → `["subject"]`
+ * - Nested: `"Observation.value.as(Quantity)"` → `["valueQuantity"]` (special)
+ * - Deep: `"Patient.contact.name"` → `["contact", "name"]`
+ *
+ * @returns Array of path segments, or null if no matching path found.
+ */
+export declare function extractPropertyPath(expression: string, resourceType: string): string[] | null;
+/**
+ * Navigate a resource object using a property path and return the value(s).
+ *
+ * Handles arrays at any level — if a path segment hits an array,
+ * the remaining path is applied to each element.
+ *
+ * @returns Array of extracted values (may be empty).
+ */
+export declare function getNestedValues(obj: unknown, pathSegments: string[]): unknown[];
+/**
+ * Build search column values for a FHIR resource.
+ *
+ * Given a resource and its applicable SearchParameterImpl list,
+ * extracts values from the resource JSON and returns a map of
+ * column name → value pairs ready for SQL insertion.
+ *
+ * @param resource - The FHIR resource to index.
+ * @param impls - SearchParameterImpl list for this resource type.
+ * @returns Column name → value map for search columns.
+ */
+export declare function buildSearchColumns(resource: FhirResource, impls: SearchParameterImpl[]): SearchColumnValues;
+/**
+ * Build shared token columns by aggregating token values from
+ * `identifier`, `_tag`, and `_security` into unified arrays.
+ *
+ * Called after buildSearchColumns() and buildMetadataColumns()
+ * to merge their token values.
+ */
+export declare function buildSharedTokenColumns(searchCols: SearchColumnValues, metadataCols: SearchColumnValues): SearchColumnValues;
+/**
+ * Build metadata search column values from a FHIR resource's `meta` element.
+ *
+ * Extracts `meta.tag` and `meta.security` into the fixed metadata columns:
+ * - `___tag` TEXT[] of "system|code" strings, `___tagSort` TEXT (triple underscore — matches Medplum)
+ * - `___security` TEXT[] of "system|code" strings, `___securitySort` TEXT
+ *
+ * v2 DDL: 2 columns per metadata token (not 3). No UUID hash, no Text column.
+ *
+ * @param resource - The FHIR resource to extract metadata from.
+ * @returns Column name → value map for metadata search columns.
+ */
+export declare function buildMetadataColumns(resource: FhirResource): SearchColumnValues;
+/**
+ * A row to be inserted into one of the 4 global lookup tables.
+ */
+export interface LookupTableRow {
+    /** Which global table: HumanName, Address, ContactPoint, or Identifier. */
+    table: LookupTableType;
+    /** Column name → value map for the lookup table row. */
+    values: Record<string, unknown>;
+}
+/**
+ * Extract rows for global lookup tables from a FHIR resource.
+ *
+ * Scans the resource for HumanName, Address, ContactPoint, and Identifier
+ * values and decomposes them into individual rows matching Medplum's schema:
+ *
+ * - `HumanName` → { resourceId, name, given, family }
+ * - `Address`   → { resourceId, address, city, country, postalCode, state, use }
+ * - `ContactPoint` → { resourceId, system, value, use }
+ * - `Identifier` → { resourceId, system, value }
+ *
+ * @param resource - The FHIR resource (must have `id`).
+ * @param impls - SearchParameterImpl list for this resource type.
+ * @returns Array of LookupTableRow to insert into global tables.
+ */
+export declare function buildLookupTableRows(resource: FhirResource & {
+    id: string;
+}, impls: SearchParameterImpl[]): LookupTableRow[];
+//# sourceMappingURL=row-indexer.d.ts.map

package/dist/lib/repo/row-indexer.d.ts.map

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package/dist/lib/repo/sql-builder.d.ts

@@ -0,0 +1,166 @@
+/**
+ * SQL Builder
+ *
+ * Generates parameterized SQL statements for FHIR resource persistence.
+ * All queries use `$1, $2, ...` placeholders — no string interpolation
+ * of user data (SQL injection safe).
+ *
+ * Table and column names are double-quoted for safety but are NOT
+ * parameterized (they come from the schema, not user input).
+ *
+ * @module fhir-persistence/repo
+ */
+/**
+ * Build an UPSERT statement for the main resource table.
+ *
+ * Generates:
+ * ```sql
+ * INSERT INTO "Patient" ("id", "content", ...)
+ * VALUES ($1, $2, ...)
+ * ON CONFLICT ("id") DO UPDATE SET
+ *   "content" = EXCLUDED."content", ...
+ * ```
+ *
+ * @param tableName - The table name (e.g., `'Patient'`).
+ * @param columns - Column name → value map. Order is preserved.
+ * @returns `{ sql, values }` ready for `client.query()`.
+ */
+export declare function buildUpsertSQL(tableName: string, columns: Record<string, unknown>): {
+    sql: string;
+    values: unknown[];
+};
+/**
+ * Build a plain INSERT statement (no conflict handling).
+ *
+ * Used for history table writes where each row is unique
+ * (keyed by `versionId`).
+ *
+ * @param tableName - The table name (e.g., `'Patient_History'`).
+ * @param columns - Column name → value map.
+ * @returns `{ sql, values }` ready for `client.query()`.
+ */
+export declare function buildInsertSQL(tableName: string, columns: Record<string, unknown>): {
+    sql: string;
+    values: unknown[];
+};
+/**
+ * Build a SELECT statement to read a resource by ID.
+ *
+ * Returns `content` and `deleted` columns.
+ *
+ * @param tableName - The table name (e.g., `'Patient'`).
+ * @returns `{ sql }` — use with `values: [id]`.
+ */
+export declare function buildSelectByIdSQL(tableName: string): string;
+/**
+ * Build a SELECT statement to read history entries for a resource.
+ *
+ * Returns all history rows ordered by `lastUpdated` descending (newest first).
+ *
+ * @param tableName - The history table name (e.g., `'Patient_History'`).
+ * @returns `{ sql }` — use with `values: [id]`.
+ */
+export declare function buildSelectHistorySQL(tableName: string): string;
+/**
+ * Options for building history SQL with filtering and pagination.
+ */
+export interface HistorySQLOptions {
+    since?: string;
+    count?: number;
+    cursor?: string;
+}
+/**
+ * Build a SELECT for instance history with optional _since, _count, cursor.
+ *
+ * Returns `id`, `versionId`, `lastUpdated`, `content` columns.
+ *
+ * @param tableName - The history table name.
+ * @returns `{ sql, values }`.
+ */
+export declare function buildInstanceHistorySQL(tableName: string, resourceId: string, options?: HistorySQLOptions): {
+    sql: string;
+    values: unknown[];
+};
+/**
+ * Build a SELECT for type-level history (all resources of a type).
+ *
+ * @param tableName - The history table name.
+ * @returns `{ sql, values }`.
+ */
+export declare function buildTypeHistorySQL(tableName: string, options?: HistorySQLOptions): {
+    sql: string;
+    values: unknown[];
+};
+/**
+ * Build a SELECT statement to read a specific version from the history table.
+ *
+ * @param tableName - The history table name (e.g., `'Patient_History'`).
+ * @returns `{ sql }` — use with `values: [id, versionId]`.
+ */
+export declare function buildSelectVersionSQL(tableName: string): string;
+/**
+ * v2: Build an INSERT statement for the main resource table.
+ * Uses `?` placeholders (SQLite-compatible).
+ */
+export declare function buildInsertMainSQLv2(tableName: string, columns: Record<string, unknown>): {
+    sql: string;
+    values: unknown[];
+};
+/**
+ * v2: Build an UPDATE statement for the main resource table.
+ * Uses `?` placeholders. Updates all columns except `id`.
+ */
+export declare function buildUpdateMainSQLv2(tableName: string, columns: Record<string, unknown>): {
+    sql: string;
+    values: unknown[];
+};
+/**
+ * v2: Build an INSERT statement for the history table.
+ * Uses `?` placeholders. Does NOT include versionSeq (AUTOINCREMENT).
+ */
+export declare function buildInsertHistorySQLv2(tableName: string, columns: Record<string, unknown>): {
+    sql: string;
+    values: unknown[];
+};
+/**
+ * v2: SELECT by ID — no projectId, returns versionId + deleted.
+ */
+export declare function buildSelectByIdSQLv2(tableName: string): string;
+/**
+ * v2: SELECT a specific version from the history table.
+ */
+export declare function buildSelectVersionSQLv2(tableName: string): string;
+/**
+ * v2: DELETE all reference rows for a resource (before re-inserting on update).
+ */
+export declare function buildDeleteReferencesSQLv2(tableName: string): string;
+/**
+ * v2: Build a multi-row INSERT for the references table.
+ * Each row has 5 columns: resourceId, targetType, targetId, code, referenceRaw.
+ */
+export declare function buildInsertReferencesSQLv2(tableName: string, rowCount: number): string;
+/**
+ * v2: Instance history SELECT with optional _since, _count, cursor.
+ * Uses `?` placeholders and ORDER BY versionSeq DESC.
+ */
+export declare function buildInstanceHistorySQLv2(tableName: string, resourceId: string, options?: {
+    since?: string;
+    count?: number;
+    cursor?: string;
+}): {
+    sql: string;
+    values: unknown[];
+};
+/**
+ * v2: Type-level history SELECT.
+ * Uses `?` placeholders and ORDER BY versionSeq DESC.
+ */
+export declare function buildTypeHistorySQLv2(tableName: string, options?: {
+    since?: string;
+    count?: number;
+    cursor?: string;
+}): {
+    sql: string;
+    values: unknown[];
+};
+//# sourceMappingURL=sql-builder.d.ts.map

package/dist/lib/repo/sql-builder.d.ts.map

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