fastrmemory 0.3.0 → 0.3.1

package/dist/src/installer/setup.js

@@ -7,15 +7,15 @@ import { PACKAGE_VERSION } from '../version.js';
 import { updateJsonConfig, upsertMcpServer } from './json-config.js';
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = path.dirname(__filename);
-export const AGENTS_DISCIPLINE_BLOCK = `
-<!-- fastrmemory:start -->
-## ⚡ FastrMemory Autonomous Agent Discipline
-
-Every AI coding agent operating in this repository MUST follow these 3 cognitive rules:
-1. **Pre-Edit Error Check**: Before editing or creating files, call \`fastr_trap_recall\` with your target file paths to check for active \`[TRAP]\` warnings.
-2. **Immediate Trap Logging**: The moment you diagnose a test failure, syntax bug, or library incompatibility, call \`fastr_trap_log\` to save the lesson with a 2.0x recall boost.
-3. **Session Verification**: When milestones are completed, call \`fastr_handoff\` with \`verifyStaging: true\` to graduate staging memories into verified rules.
-<!-- fastrmemory:end -->
+export const AGENTS_DISCIPLINE_BLOCK = `
+<!-- fastrmemory:start -->
+## ⚡ FastrMemory Autonomous Agent Discipline
+
+Every AI coding agent operating in this repository MUST follow these 3 cognitive rules:
+1. **Pre-Edit Error Check**: Before editing or creating files, call \`fastr_trap_recall\` with your target file paths to check for active \`[TRAP]\` warnings.
+2. **Immediate Trap Logging**: The moment you diagnose a test failure, syntax bug, or library incompatibility, call \`fastr_trap_log\` to save the lesson with a 2.0x recall boost.
+3. **Session Verification**: When milestones are completed, call \`fastr_handoff\` with \`verifyStaging: true\` to graduate staging memories into verified rules.
+<!-- fastrmemory:end -->
 `;
 export function getAntigravityConfigPath(homeDir = os.homedir()) {
     return path.join(homeDir, '.gemini', 'antigravity', 'mcp_config.json');
@@ -60,6 +60,10 @@ export function resolveMcpCommand(platform = process.platform, cliPath = findOwn
         ? { command: 'cmd', args: ['/c', 'npx', ...npxArgs] }
         : { command: 'npx', args: npxArgs };
 }
+/** Pin a user-scoped MCP entry to a project root so the client's launch directory cannot change the database. */
+export function withProjectRoot(entry, projectRoot) {
+    return { ...entry, args: [...entry.args, '--project', path.resolve(projectRoot)] };
+}
 function wireMcpClient(target, entry) {
     if (target.requireDir && !fs.existsSync(target.requireDir)) {
         return 'Skipped (not installed)';
@@ -85,7 +89,7 @@ export function ensureAgentsDiscipline(projectRoot) {
 }
 export function runInteractiveSetup(options = {}) {
     const homeDir = options.homeDir ?? os.homedir();
-    const projectRoot = options.projectRoot ?? process.cwd();
+    const projectRoot = path.resolve(options.projectRoot ?? process.cwd());
     console.log('\n=================================================');
     console.log('⚡ FastrMemory: Interactive Agent Setup Wizard');
     console.log('   High-Performance Cognitive Agent Memory Engine');
@@ -101,20 +105,22 @@ export function runInteractiveSetup(options = {}) {
     catch (err) {
         console.log(`[1/8] Project init note: ${err.message}\n`);
     }
-    const mcpTarget = resolveMcpCommand();
+    const projectMcpTarget = resolveMcpCommand();
+    const globalMcpTarget = withProjectRoot(projectMcpTarget, projectRoot);
     const antigravityPath = getAntigravityConfigPath(homeDir);
     const claudeDesktopPath = getClaudeDesktopConfigPath(homeDir);
     // 2-6. Wire MCP clients. Existing configs are merged (never replaced), backed up once, and written atomically.
+    // User-scoped clients get an explicit --project so their launch directory cannot select the wrong database.
     const clients = [
-        ['[2/8] Antigravity IDE:', { label: 'Antigravity', filePath: antigravityPath, requireDir: path.dirname(path.dirname(antigravityPath)) }],
-        ['[3/8] Claude Desktop: ', { label: 'Claude Desktop', filePath: claudeDesktopPath, requireDir: path.dirname(claudeDesktopPath) }],
-        ['[4/8] Cursor IDE:     ', { label: 'Cursor', filePath: path.join(projectRoot, '.cursor', 'mcp.json') }],
+        ['[2/8] Antigravity IDE:', { label: 'Antigravity', filePath: antigravityPath, requireDir: path.dirname(path.dirname(antigravityPath)) }, globalMcpTarget],
+        ['[3/8] Claude Desktop: ', { label: 'Claude Desktop', filePath: claudeDesktopPath, requireDir: path.dirname(claudeDesktopPath) }, globalMcpTarget],
+        ['[4/8] Cursor IDE:     ', { label: 'Cursor', filePath: path.join(projectRoot, '.cursor', 'mcp.json') }, projectMcpTarget],
         // Claude Code reads user-scoped MCP servers from ~/.claude.json (it ignores mcpServers in settings.json).
-        ['[5/8] Claude Code:    ', { label: 'Claude Code', filePath: path.join(homeDir, '.claude.json'), requireDir: path.join(homeDir, '.claude') }],
-        ['[6/8] Windsurf:       ', { label: 'Windsurf', filePath: path.join(homeDir, '.codeium', 'windsurf', 'mcp_config.json'), requireDir: path.join(homeDir, '.codeium', 'windsurf') }],
+        ['[5/8] Claude Code:    ', { label: 'Claude Code', filePath: path.join(homeDir, '.claude.json'), requireDir: path.join(homeDir, '.claude') }, globalMcpTarget],
+        ['[6/8] Windsurf:       ', { label: 'Windsurf', filePath: path.join(homeDir, '.codeium', 'windsurf', 'mcp_config.json'), requireDir: path.join(homeDir, '.codeium', 'windsurf') }, globalMcpTarget],
     ];
-    for (const [prefix, target] of clients) {
-        console.log(`${prefix} ${wireMcpClient(target, mcpTarget)}`);
+    for (const [prefix, target, entry] of clients) {
+        console.log(`${prefix} ${wireMcpClient(target, entry)}`);
     }
     // 7. Wire Autonomous Agent Discipline in AGENTS.md
     let agentStatus;

package/dist/src/installer/setup.js.map

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package/dist/src/mcp/server.js

@@ -1345,17 +1345,17 @@ export function createFastrMcpServer(context, options = {}) {
         const graphTable = mem.project_id === 'global' && repo.hasGlobalDb()
             ? 'global_db.graph_edges'
             : 'graph_edges';
-        const graphEdges = db.prepare(`
-      SELECT id, source_id, target_id, edge_type, weight, created_at
-      FROM ${graphTable}
-      WHERE project_id = ? AND (source_id = ? OR target_id = ?)
-      ORDER BY created_at ASC
+        const graphEdges = db.prepare(`
+      SELECT id, source_id, target_id, edge_type, weight, created_at
+      FROM ${graphTable}
+      WHERE project_id = ? AND (source_id = ? OR target_id = ?)
+      ORDER BY created_at ASC
     `).all(mem.project_id, mem.id, mem.id);
-        const conflictRows = db.prepare(`
-      SELECT *
-      FROM memory_conflicts
-      WHERE project_id = ? AND (memory_a_id = ? OR memory_b_id = ?)
-      ORDER BY CASE status WHEN 'open' THEN 0 ELSE 1 END, id DESC
+        const conflictRows = db.prepare(`
+      SELECT *
+      FROM memory_conflicts
+      WHERE project_id = ? AND (memory_a_id = ? OR memory_b_id = ?)
+      ORDER BY CASE status WHEN 'open' THEN 0 ELSE 1 END, id DESC
     `).all(mem.project_id, mem.id, mem.id);
         const conflicts = conflictRows.map((conflict) => {
             const otherId = conflict.memory_a_id === mem.id ? conflict.memory_b_id : conflict.memory_a_id;
@@ -1478,12 +1478,12 @@ export function createFastrMcpServer(context, options = {}) {
             where.push('(created_at < ? OR (created_at = ? AND id < ?))');
             params.push(c.createdAt, c.createdAt, c.id);
         }
-        const rows = db.prepare(`
-        SELECT id, title, kind, module, status, reward_score, created_at
-        FROM memories
-        WHERE ${where.join(' AND ')}
-        ORDER BY created_at DESC, id DESC
-        LIMIT ?
+        const rows = db.prepare(`
+        SELECT id, title, kind, module, status, reward_score, created_at
+        FROM memories
+        WHERE ${where.join(' AND ')}
+        ORDER BY created_at DESC, id DESC
+        LIMIT ?
       `).all(...params, limit + 1);
         const page = rows.slice(0, limit);
         const last = page[page.length - 1];
@@ -1677,15 +1677,15 @@ export function createFastrMcpServer(context, options = {}) {
     // RESOURCE 2: fastr://project/traps
     // ==========================================
     server.registerResource('traps', 'fastr://project/traps', { description: 'All active [TRAP] warnings for this project', mimeType: 'text/markdown' }, async (uri) => {
-        const rows = db.prepare(`
-        SELECT id, module, title, content
-        FROM memories
-        WHERE project_id = ?
-          AND kind = 'error_trap'
-          AND valid_to IS NULL
-          AND status != 'superseded'
-          AND status != 'dormant'
-        ORDER BY reward_score DESC, created_at DESC
+        const rows = db.prepare(`
+        SELECT id, module, title, content
+        FROM memories
+        WHERE project_id = ?
+          AND kind = 'error_trap'
+          AND valid_to IS NULL
+          AND status != 'superseded'
+          AND status != 'dormant'
+        ORDER BY reward_score DESC, created_at DESC
       `).all(config.projectId);
         const text = rows.length > 0
             ? rows.map((r) => `### [${r.id}] [TRAP] ${r.title} (${r.module})\n${r.content}`).join('\n\n---\n\n')

package/dist/src/mirror/markdown-pages.js

@@ -45,28 +45,28 @@ export function modulePageFileName(moduleName) {
 export function renderModuleMarkdown(db, projectId, moduleName) {
     const normModule = moduleName.trim().toLowerCase();
     // 1. Fetch active memories
-    const activeRows = db.prepare(`
-    SELECT m.*, GROUP_CONCAT(DISTINCT fl.file_path) as linked_files
-    FROM memories m
-    LEFT JOIN file_links fl ON fl.memory_id = m.id
-    WHERE m.project_id = ?
-      AND m.module = ?
-      AND m.valid_to IS NULL
-      AND m.status != 'superseded'
-      AND m.status != 'dormant'
-    GROUP BY m.id
-    ORDER BY m.pinned DESC, (m.kind = 'error_trap') DESC, m.reward_score DESC, m.created_at DESC
+    const activeRows = db.prepare(`
+    SELECT m.*, GROUP_CONCAT(DISTINCT fl.file_path) as linked_files
+    FROM memories m
+    LEFT JOIN file_links fl ON fl.memory_id = m.id
+    WHERE m.project_id = ?
+      AND m.module = ?
+      AND m.valid_to IS NULL
+      AND m.status != 'superseded'
+      AND m.status != 'dormant'
+    GROUP BY m.id
+    ORDER BY m.pinned DESC, (m.kind = 'error_trap') DESC, m.reward_score DESC, m.created_at DESC
   `).all(projectId, normModule);
     // 2. Fetch superseded/historical memories
-    const supersededRows = db.prepare(`
-    SELECT m.*, GROUP_CONCAT(DISTINCT fl.file_path) as linked_files
-    FROM memories m
-    LEFT JOIN file_links fl ON fl.memory_id = m.id
-    WHERE m.project_id = ?
-      AND m.module = ?
-      AND (m.valid_to IS NOT NULL OR m.status = 'superseded')
-    GROUP BY m.id
-    ORDER BY COALESCE(m.valid_to, m.created_at) DESC
+    const supersededRows = db.prepare(`
+    SELECT m.*, GROUP_CONCAT(DISTINCT fl.file_path) as linked_files
+    FROM memories m
+    LEFT JOIN file_links fl ON fl.memory_id = m.id
+    WHERE m.project_id = ?
+      AND m.module = ?
+      AND (m.valid_to IS NOT NULL OR m.status = 'superseded')
+    GROUP BY m.id
+    ORDER BY COALESCE(m.valid_to, m.created_at) DESC
   `).all(projectId, normModule);
     const lines = [
         `# Module: ${normModule}`,
@@ -129,8 +129,8 @@ export function syncModulePage(db, projectRoot, projectId, moduleName) {
     return targetFile;
 }
 export function syncAllModulePages(db, projectRoot, projectId) {
-    const rows = db.prepare(`
-    SELECT DISTINCT module FROM memories WHERE project_id = ?
+    const rows = db.prepare(`
+    SELECT DISTINCT module FROM memories WHERE project_id = ?
   `).all(projectId);
     const syncedFiles = [];
     for (const row of rows) {

package/dist/src/search/backfill.js

@@ -13,12 +13,12 @@ export async function backfillEmbeddings(db, repo, projectId, opts = {}) {
         return 0;
     const provider = getAvailableEmbeddingProvider();
     const header = embeddingHeader(provider.modelId);
-    const rows = db.prepare(`
-    SELECT id, title, content, module FROM memories
-    WHERE project_id IN (?, 'global')
-      AND (embedded = 0 OR embedding IS NULL OR substr(embedding, 1, 4) != ?)
-    ORDER BY embedded ASC, created_at DESC
-    LIMIT ?
+    const rows = db.prepare(`
+    SELECT id, title, content, module FROM memories
+    WHERE project_id IN (?, 'global')
+      AND (embedded = 0 OR embedding IS NULL OR substr(embedding, 1, 4) != ?)
+    ORDER BY embedded ASC, created_at DESC
+    LIMIT ?
   `).all(projectId, header, limit);
     let count = 0;
     for (const row of rows) {

package/dist/src/search/hybrid-rrf.js

@@ -17,15 +17,15 @@ function attachConflictMarkers(db, projectId, scored) {
         const placeholders = chunk.map(() => '?').join(',');
         let rows;
         try {
-            rows = db.prepare(`
-        SELECT c.id, c.memory_a_id, c.memory_b_id, c.reason, c.score,
-               ma.title AS a_title, mb.title AS b_title
-        FROM memory_conflicts c
-        LEFT JOIN memories ma ON ma.id = c.memory_a_id
-        LEFT JOIN memories mb ON mb.id = c.memory_b_id
-        WHERE c.project_id = ? AND c.status = 'open'
-          AND (c.memory_a_id IN (${placeholders}) OR c.memory_b_id IN (${placeholders}))
-        ORDER BY c.id DESC
+            rows = db.prepare(`
+        SELECT c.id, c.memory_a_id, c.memory_b_id, c.reason, c.score,
+               ma.title AS a_title, mb.title AS b_title
+        FROM memory_conflicts c
+        LEFT JOIN memories ma ON ma.id = c.memory_a_id
+        LEFT JOIN memories mb ON mb.id = c.memory_b_id
+        WHERE c.project_id = ? AND c.status = 'open'
+          AND (c.memory_a_id IN (${placeholders}) OR c.memory_b_id IN (${placeholders}))
+        ORDER BY c.id DESC
       `).all(projectId, ...chunk, ...chunk);
         }
         catch {
@@ -141,16 +141,16 @@ export async function searchMemories(db, params) {
             // Column order is id (UNINDEXED), title, module, content. The leading 0.0 weight
             // keeps the unindexed id column out of the score while boosting title and module.
             const bm25Expr = 'bm25(memories_fts, 0.0, 10.0, 5.0, 1.0)';
-            let querySql = `
-        SELECT * FROM (
-          SELECT m.*, ${bm25Expr} AS rank
-          FROM memories_fts f
-          JOIN memories m ON m.id = f.id
-          WHERE (m.project_id = ? OR m.project_id = 'global')
-            AND memories_fts MATCH ?
-          ORDER BY rank ASC
-          LIMIT 50
-        )
+            let querySql = `
+        SELECT * FROM (
+          SELECT m.*, ${bm25Expr} AS rank
+          FROM memories_fts f
+          JOIN memories m ON m.id = f.id
+          WHERE (m.project_id = ? OR m.project_id = 'global')
+            AND memories_fts MATCH ?
+          ORDER BY rank ASC
+          LIMIT 50
+        )
       `;
             const ftsParams = [projectId, ftsQuery];
             if (isGlobalAttached) {
@@ -158,16 +158,16 @@ export async function searchMemories(db, params) {
                 // name or an alias. Keeping the FTS table unaliased makes the unqualified
                 // `memories_fts` resolve to the attached table in this subquery.
                 const globalBm25Expr = 'bm25(memories_fts, 0.0, 10.0, 5.0, 1.0)';
-                querySql += `
-          UNION ALL
-          SELECT * FROM (
-            SELECT gm.*, ${globalBm25Expr} AS rank
-            FROM global_db.memories_fts
-            JOIN global_db.memories gm ON gm.id = memories_fts.id
-            WHERE memories_fts MATCH ?
-            ORDER BY rank ASC
-            LIMIT 50
-          )
+                querySql += `
+          UNION ALL
+          SELECT * FROM (
+            SELECT gm.*, ${globalBm25Expr} AS rank
+            FROM global_db.memories_fts
+            JOIN global_db.memories gm ON gm.id = memories_fts.id
+            WHERE memories_fts MATCH ?
+            ORDER BY rank ASC
+            LIMIT 50
+          )
         `;
                 ftsParams.push(ftsQuery);
             }
@@ -202,18 +202,18 @@ export async function searchMemories(db, params) {
     }
     if (enableVector && query.trim().length > 0) {
         const isGlobalAttached = hasGlobalDb(db);
-        let vecSql = `
-      SELECT * FROM memories
-      WHERE (project_id = ? OR project_id = 'global')
-        AND embedded = 1
-        AND embedding IS NOT NULL
+        let vecSql = `
+      SELECT * FROM memories
+      WHERE (project_id = ? OR project_id = 'global')
+        AND embedded = 1
+        AND embedding IS NOT NULL
     `;
         if (isGlobalAttached) {
-            vecSql += `
-        UNION ALL
-        SELECT * FROM global_db.memories
-        WHERE embedded = 1
-          AND embedding IS NOT NULL
+            vecSql += `
+        UNION ALL
+        SELECT * FROM global_db.memories
+        WHERE embedded = 1
+          AND embedding IS NOT NULL
       `;
         }
         let embeddedRows = [];
@@ -279,12 +279,12 @@ export async function searchMemories(db, params) {
         // Round 1: Direct file link matches
         if (seedFiles.size > 0) {
             const placeholders = Array.from(seedFiles).map(() => '?').join(',');
-            const fileRows = db.prepare(`
-      SELECT DISTINCT m.id
-      FROM file_links fl
-      JOIN memories m ON m.id = fl.memory_id
-      WHERE m.project_id = ?
-        AND fl.file_path IN (${placeholders})
+            const fileRows = db.prepare(`
+      SELECT DISTINCT m.id
+      FROM file_links fl
+      JOIN memories m ON m.id = fl.memory_id
+      WHERE m.project_id = ?
+        AND fl.file_path IN (${placeholders})
     `).all(projectId, ...Array.from(seedFiles));
             for (const r of fileRows) {
                 activationScores.set(r.id, (activationScores.get(r.id) || 0) + 1.0);
@@ -293,12 +293,12 @@ export async function searchMemories(db, params) {
         // Round 1: Direct entity link matches
         if (seedEntityNames.length > 0) {
             const placeholders = seedEntityNames.map(() => '?').join(',');
-            const entityRows = db.prepare(`
-      SELECT DISTINCT ge.source_id AS memory_id, ge.weight
-      FROM entities e
-      JOIN graph_edges ge ON ge.target_id = e.id AND ge.edge_type = 'entity_link'
-      WHERE e.project_id = ?
-        AND LOWER(e.name) IN (${placeholders})
+            const entityRows = db.prepare(`
+      SELECT DISTINCT ge.source_id AS memory_id, ge.weight
+      FROM entities e
+      JOIN graph_edges ge ON ge.target_id = e.id AND ge.edge_type = 'entity_link'
+      WHERE e.project_id = ?
+        AND LOWER(e.name) IN (${placeholders})
     `).all(projectId, ...seedEntityNames);
             for (const r of entityRows) {
                 activationScores.set(r.memory_id, (activationScores.get(r.memory_id) || 0) + (r.weight * 1.8));
@@ -328,11 +328,11 @@ export async function searchMemories(db, params) {
                 if (activeKeys.length === 0)
                     break;
                 const placeholders = activeKeys.map(() => '?').join(',');
-                const edgeRows = db.prepare(`
-        SELECT ge.source_id, ge.target_id, ge.edge_type, ge.weight
-        FROM graph_edges ge
-        WHERE ge.project_id = ?
-          AND (ge.source_id IN (${placeholders}) OR ge.target_id IN (${placeholders}))
+                const edgeRows = db.prepare(`
+        SELECT ge.source_id, ge.target_id, ge.edge_type, ge.weight
+        FROM graph_edges ge
+        WHERE ge.project_id = ?
+          AND (ge.source_id IN (${placeholders}) OR ge.target_id IN (${placeholders}))
       `).all(projectId, ...activeKeys, ...activeKeys);
                 for (const edge of edgeRows) {
                     const isOutward = activationScores.has(edge.source_id);
@@ -394,14 +394,14 @@ export async function searchMemories(db, params) {
     if (files.length > 0) {
         const placeholders = files.map(() => '?').join(',');
         try {
-            const rows = db.prepare(`
-        SELECT DISTINCT memory_id FROM file_links WHERE file_path IN (${placeholders})
+            const rows = db.prepare(`
+        SELECT DISTINCT memory_id FROM file_links WHERE file_path IN (${placeholders})
       `).all(...files);
             for (const row of rows)
                 fileLinkedMemoryIds.add(row.memory_id);
             if (hasGlobalDb(db)) {
-                const globalRows = db.prepare(`
-          SELECT DISTINCT memory_id FROM global_db.file_links WHERE file_path IN (${placeholders})
+                const globalRows = db.prepare(`
+          SELECT DISTINCT memory_id FROM global_db.file_links WHERE file_path IN (${placeholders})
         `).all(...files);
                 for (const row of globalRows)
                     fileLinkedMemoryIds.add(row.memory_id);