ezmedicationinput 0.1.44 → 0.1.45
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.cjs +18842 -0
- package/dist/index.js +18689 -675
- package/package.json +17 -6
- package/dist/advice-rules.json +0 -772
- package/dist/advice-terminology.json +0 -104
- package/dist/advice.js +0 -1375
- package/dist/context.js +0 -50
- package/dist/event-trigger.d.ts +0 -14
- package/dist/event-trigger.js +0 -501
- package/dist/fhir-translations.js +0 -117
- package/dist/fhir.js +0 -693
- package/dist/format.js +0 -1034
- package/dist/i18n.js +0 -1341
- package/dist/internal-types.d.ts +0 -60
- package/dist/internal-types.js +0 -2
- package/dist/ir.js +0 -178
- package/dist/lexer/lex.js +0 -401
- package/dist/lexer/meaning.js +0 -619
- package/dist/lexer/surface.js +0 -62
- package/dist/lexer/token-types.js +0 -19
- package/dist/maps.js +0 -2226
- package/dist/package.json +0 -3
- package/dist/parser-state.js +0 -441
- package/dist/parser.js +0 -5631
- package/dist/prn.js +0 -59
- package/dist/safety.js +0 -15
- package/dist/schedule.js +0 -1636
- package/dist/segment.js +0 -203
- package/dist/site-phrases.js +0 -344
- package/dist/suggest.js +0 -907
- package/dist/timing-summary.js +0 -138
- package/dist/types.js +0 -276
- package/dist/utils/array.js +0 -11
- package/dist/utils/enum.d.ts +0 -2
- package/dist/utils/enum.js +0 -7
- package/dist/utils/object.js +0 -34
- package/dist/utils/strength.js +0 -149
- package/dist/utils/text.js +0 -48
- package/dist/utils/units.js +0 -82
package/dist/fhir.js
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.canonicalToFhir = canonicalToFhir;
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exports.toFhir = toFhir;
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exports.canonicalFromFhir = canonicalFromFhir;
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exports.parserStateFromFhir = parserStateFromFhir;
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const advice_1 = require("./advice");
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const fhir_translations_1 = require("./fhir-translations");
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const format_1 = require("./format");
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const parser_state_1 = require("./parser-state");
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const prn_1 = require("./prn");
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const maps_1 = require("./maps");
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const types_1 = require("./types");
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const object_1 = require("./utils/object");
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const array_1 = require("./utils/array");
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const SNOMED_SYSTEM = "http://snomed.info/sct";
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const UCUM_SYSTEM = "http://unitsofmeasure.org";
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function createEmptyCanonicalClause(rawText) {
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return {
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kind: "administration",
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rawText,
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raw: {
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start: 0,
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end: rawText.length,
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text: rawText
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},
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leftovers: [],
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evidence: [],
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confidence: 1
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};
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}
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function selectFirstCodingWithCode(concept) {
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var _a;
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if (!((_a = concept === null || concept === void 0 ? void 0 : concept.coding) === null || _a === void 0 ? void 0 : _a.length)) {
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return undefined;
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}
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for (const coding of concept.coding) {
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if (coding.code) {
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return coding;
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}
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}
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return undefined;
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}
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function selectPreferredSiteCoding(site) {
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var _a;
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if (!((_a = site === null || site === void 0 ? void 0 : site.coding) === null || _a === void 0 ? void 0 : _a.length)) {
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return undefined;
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}
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for (const coding of site.coding) {
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if (coding.system === SNOMED_SYSTEM && coding.code) {
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return coding;
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}
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}
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return selectFirstCodingWithCode(site);
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}
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function buildFhirDoseRange(range, unit) {
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const fhirRange = {};
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if (range.low !== undefined) {
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fhirRange.low = {
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value: range.low,
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unit
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};
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}
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if (range.high !== undefined) {
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fhirRange.high = {
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value: range.high,
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unit
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};
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}
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if (!fhirRange.low && !fhirRange.high) {
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return undefined;
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}
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return fhirRange;
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}
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function describeDurationUnit(unit, value) {
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const plural = value !== 1;
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switch (unit) {
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case types_1.FhirPeriodUnit.Second:
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return plural ? "seconds" : "second";
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case types_1.FhirPeriodUnit.Minute:
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return plural ? "minutes" : "minute";
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case types_1.FhirPeriodUnit.Hour:
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return plural ? "hours" : "hour";
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case types_1.FhirPeriodUnit.Day:
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return plural ? "days" : "day";
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case types_1.FhirPeriodUnit.Week:
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return plural ? "weeks" : "week";
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case types_1.FhirPeriodUnit.Month:
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return plural ? "months" : "month";
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case types_1.FhirPeriodUnit.Year:
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return plural ? "years" : "year";
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default:
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return unit;
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}
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}
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function buildFhirDurationQuantity(value, unit) {
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return {
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value,
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unit: describeDurationUnit(unit, value),
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system: UCUM_SYSTEM,
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code: unit
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};
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}
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function buildFhirBoundsRange(low, high, unit) {
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return {
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low: buildFhirDurationQuantity(low, unit),
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high: buildFhirDurationQuantity(high, unit)
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};
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}
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function parseFhirDurationUnit(quantity) {
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var _a, _b, _c;
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const candidate = (_b = (_a = quantity === null || quantity === void 0 ? void 0 : quantity.code) === null || _a === void 0 ? void 0 : _a.trim().toLowerCase()) !== null && _b !== void 0 ? _b : (_c = quantity === null || quantity === void 0 ? void 0 : quantity.unit) === null || _c === void 0 ? void 0 : _c.trim().toLowerCase();
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switch (candidate) {
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case "s":
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case "sec":
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case "second":
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case "seconds":
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return types_1.FhirPeriodUnit.Second;
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case "min":
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case "mins":
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case "minute":
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case "minutes":
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return types_1.FhirPeriodUnit.Minute;
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case "h":
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case "hr":
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case "hrs":
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case "hour":
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case "hours":
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return types_1.FhirPeriodUnit.Hour;
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case "d":
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case "day":
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case "days":
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return types_1.FhirPeriodUnit.Day;
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case "wk":
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case "wks":
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case "week":
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case "weeks":
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return types_1.FhirPeriodUnit.Week;
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case "mo":
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case "month":
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case "months":
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return types_1.FhirPeriodUnit.Month;
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case "a":
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case "yr":
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case "yrs":
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case "year":
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case "years":
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return types_1.FhirPeriodUnit.Year;
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default:
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return undefined;
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}
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}
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function extractCanonicalTimingBounds(repeat) {
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if (!repeat) {
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return {};
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}
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if (((_a = repeat.boundsDuration) === null || _a === void 0 ? void 0 : _a.value) !== undefined) {
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const durationUnit = parseFhirDurationUnit(repeat.boundsDuration);
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if (!durationUnit) {
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return {};
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}
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return {
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duration: repeat.boundsDuration.value,
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durationUnit
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};
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}
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if (!repeat.boundsRange) {
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return {};
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}
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const low = repeat.boundsRange.low;
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const high = repeat.boundsRange.high;
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const lowUnit = parseFhirDurationUnit(low);
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const highUnit = parseFhirDurationUnit(high);
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const durationUnit = lowUnit !== null && lowUnit !== void 0 ? lowUnit : highUnit;
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if (!durationUnit) {
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return {};
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}
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let warning;
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if (lowUnit && highUnit && lowUnit !== highUnit) {
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warning = `FHIR timing boundsRange low/high units differ (${lowUnit} vs ${highUnit}); preserved numeric bounds using ${durationUnit}.`;
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}
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return {
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duration: low === null || low === void 0 ? void 0 : low.value,
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durationMax: high === null || high === void 0 ? void 0 : high.value,
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durationUnit,
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warning
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};
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}
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function extractCanonicalDoseRange(range) {
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var _a, _b, _c, _d;
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const canonicalRange = {};
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const lowUnit = (_a = range.low) === null || _a === void 0 ? void 0 : _a.unit;
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const highUnit = (_b = range.high) === null || _b === void 0 ? void 0 : _b.unit;
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if (((_c = range.low) === null || _c === void 0 ? void 0 : _c.value) !== undefined) {
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canonicalRange.low = range.low.value;
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}
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if (((_d = range.high) === null || _d === void 0 ? void 0 : _d.value) !== undefined) {
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canonicalRange.high = range.high.value;
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}
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if (canonicalRange.low === undefined && canonicalRange.high === undefined) {
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return {};
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}
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const unit = lowUnit !== null && lowUnit !== void 0 ? lowUnit : highUnit;
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let warning;
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if (lowUnit && highUnit && lowUnit !== highUnit) {
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warning = `FHIR doseRange low/high units differ (${lowUnit} vs ${highUnit}); preserved numeric bounds using ${unit}.`;
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}
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return {
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range: canonicalRange,
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unit,
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warning
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};
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}
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function appendWarning(warnings, warning) {
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if (!warning) {
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return warnings;
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}
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if (!warnings) {
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return [warning];
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}
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warnings.push(warning);
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return warnings;
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}
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function canonicalToFhir(clause, textOverride) {
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var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o, _p, _q, _r, _s, _t, _u, _v, _w, _x, _y, _z, _0, _1, _2, _3, _4, _5, _6, _7, _8, _9;
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const dosage = {};
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const repeat = {};
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let hasRepeat = false;
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const schedule = clause.schedule;
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if ((schedule === null || schedule === void 0 ? void 0 : schedule.frequency) !== undefined) {
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repeat.frequency = schedule.frequency;
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hasRepeat = true;
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}
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if ((schedule === null || schedule === void 0 ? void 0 : schedule.count) !== undefined) {
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repeat.count = schedule.count;
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hasRepeat = true;
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}
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if ((schedule === null || schedule === void 0 ? void 0 : schedule.duration) !== undefined && schedule.durationUnit) {
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if (schedule.durationMax !== undefined && schedule.durationMax !== schedule.duration) {
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repeat.boundsRange = buildFhirBoundsRange(schedule.duration, schedule.durationMax, schedule.durationUnit);
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}
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else {
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repeat.boundsDuration = buildFhirDurationQuantity(schedule.duration, schedule.durationUnit);
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}
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hasRepeat = true;
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}
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if ((schedule === null || schedule === void 0 ? void 0 : schedule.frequencyMax) !== undefined) {
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repeat.frequencyMax = schedule.frequencyMax;
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hasRepeat = true;
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}
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if ((schedule === null || schedule === void 0 ? void 0 : schedule.period) !== undefined && schedule.periodUnit) {
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repeat.period = schedule.period;
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repeat.periodUnit = schedule.periodUnit;
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hasRepeat = true;
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}
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if ((schedule === null || schedule === void 0 ? void 0 : schedule.periodMax) !== undefined) {
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repeat.periodMax = schedule.periodMax;
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hasRepeat = true;
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}
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if ((_a = schedule === null || schedule === void 0 ? void 0 : schedule.dayOfWeek) === null || _a === void 0 ? void 0 : _a.length) {
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repeat.dayOfWeek = [...schedule.dayOfWeek];
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hasRepeat = true;
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}
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if ((_b = schedule === null || schedule === void 0 ? void 0 : schedule.when) === null || _b === void 0 ? void 0 : _b.length) {
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repeat.when = [...schedule.when];
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hasRepeat = true;
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}
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if ((_c = schedule === null || schedule === void 0 ? void 0 : schedule.timeOfDay) === null || _c === void 0 ? void 0 : _c.length) {
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repeat.timeOfDay = [...schedule.timeOfDay];
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hasRepeat = true;
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}
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if (hasRepeat) {
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dosage.timing = { repeat };
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}
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if (schedule === null || schedule === void 0 ? void 0 : schedule.timingCode) {
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dosage.timing = (_d = dosage.timing) !== null && _d !== void 0 ? _d : {};
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dosage.timing.code = {
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coding: [{ code: schedule.timingCode }],
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text: schedule.timingCode
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};
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}
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if ((_e = clause.dose) === null || _e === void 0 ? void 0 : _e.range) {
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const doseRange = buildFhirDoseRange(clause.dose.range, clause.dose.unit);
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if (doseRange) {
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dosage.doseAndRate = [
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{
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doseRange
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}
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];
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-
}
|
|
292
|
-
}
|
|
293
|
-
else if (((_f = clause.dose) === null || _f === void 0 ? void 0 : _f.value) !== undefined) {
|
|
294
|
-
dosage.doseAndRate = [
|
|
295
|
-
{
|
|
296
|
-
doseQuantity: {
|
|
297
|
-
value: clause.dose.value,
|
|
298
|
-
unit: clause.dose.unit
|
|
299
|
-
}
|
|
300
|
-
}
|
|
301
|
-
];
|
|
302
|
-
}
|
|
303
|
-
if (((_g = clause.route) === null || _g === void 0 ? void 0 : _g.code) || ((_h = clause.route) === null || _h === void 0 ? void 0 : _h.text)) {
|
|
304
|
-
const routeCode = (_j = clause.route) === null || _j === void 0 ? void 0 : _j.code;
|
|
305
|
-
const coding = routeCode ? maps_1.ROUTE_SNOMED[routeCode] : undefined;
|
|
306
|
-
const text = (_l = (_k = clause.route) === null || _k === void 0 ? void 0 : _k.text) !== null && _l !== void 0 ? _l : (routeCode ? maps_1.ROUTE_TEXT[routeCode] : undefined);
|
|
307
|
-
if (coding) {
|
|
308
|
-
dosage.route = {
|
|
309
|
-
text,
|
|
310
|
-
coding: [
|
|
311
|
-
{
|
|
312
|
-
system: SNOMED_SYSTEM,
|
|
313
|
-
code: coding.code,
|
|
314
|
-
display: coding.display
|
|
315
|
-
}
|
|
316
|
-
]
|
|
317
|
-
};
|
|
318
|
-
}
|
|
319
|
-
else if (text) {
|
|
320
|
-
dosage.route = { text };
|
|
321
|
-
}
|
|
322
|
-
}
|
|
323
|
-
if (((_m = clause.site) === null || _m === void 0 ? void 0 : _m.text) || ((_p = (_o = clause.site) === null || _o === void 0 ? void 0 : _o.coding) === null || _p === void 0 ? void 0 : _p.code)) {
|
|
324
|
-
const coding = ((_r = (_q = clause.site) === null || _q === void 0 ? void 0 : _q.coding) === null || _r === void 0 ? void 0 : _r.code)
|
|
325
|
-
? [
|
|
326
|
-
{
|
|
327
|
-
system: (_s = clause.site.coding.system) !== null && _s !== void 0 ? _s : SNOMED_SYSTEM,
|
|
328
|
-
code: clause.site.coding.code,
|
|
329
|
-
display: clause.site.coding.display
|
|
330
|
-
}
|
|
331
|
-
]
|
|
332
|
-
: undefined;
|
|
333
|
-
dosage.site = {
|
|
334
|
-
text: (_t = clause.site) === null || _t === void 0 ? void 0 : _t.text,
|
|
335
|
-
coding
|
|
336
|
-
};
|
|
337
|
-
}
|
|
338
|
-
if (((_u = clause.method) === null || _u === void 0 ? void 0 : _u.text) || ((_v = clause.method) === null || _v === void 0 ? void 0 : _v._text) || ((_x = (_w = clause.method) === null || _w === void 0 ? void 0 : _w.coding) === null || _x === void 0 ? void 0 : _x.code)) {
|
|
339
|
-
dosage.method = {
|
|
340
|
-
text: (_y = clause.method) === null || _y === void 0 ? void 0 : _y.text,
|
|
341
|
-
_text: (0, fhir_translations_1.clonePrimitiveElement)((_z = clause.method) === null || _z === void 0 ? void 0 : _z._text),
|
|
342
|
-
coding: ((_1 = (_0 = clause.method) === null || _0 === void 0 ? void 0 : _0.coding) === null || _1 === void 0 ? void 0 : _1.code)
|
|
343
|
-
? [
|
|
344
|
-
{
|
|
345
|
-
system: (_2 = clause.method.coding.system) !== null && _2 !== void 0 ? _2 : SNOMED_SYSTEM,
|
|
346
|
-
code: clause.method.coding.code,
|
|
347
|
-
display: clause.method.coding.display,
|
|
348
|
-
_display: (0, fhir_translations_1.clonePrimitiveElement)(clause.method.coding._display)
|
|
349
|
-
}
|
|
350
|
-
]
|
|
351
|
-
: undefined
|
|
352
|
-
};
|
|
353
|
-
}
|
|
354
|
-
if ((_3 = clause.additionalInstructions) === null || _3 === void 0 ? void 0 : _3.length) {
|
|
355
|
-
dosage.additionalInstruction = [];
|
|
356
|
-
for (const instruction of clause.additionalInstructions) {
|
|
357
|
-
dosage.additionalInstruction.push({
|
|
358
|
-
text: instruction.text,
|
|
359
|
-
coding: ((_4 = instruction.coding) === null || _4 === void 0 ? void 0 : _4.code)
|
|
360
|
-
? [
|
|
361
|
-
{
|
|
362
|
-
system: (_5 = instruction.coding.system) !== null && _5 !== void 0 ? _5 : SNOMED_SYSTEM,
|
|
363
|
-
code: instruction.coding.code,
|
|
364
|
-
display: instruction.coding.display
|
|
365
|
-
}
|
|
366
|
-
]
|
|
367
|
-
: undefined
|
|
368
|
-
});
|
|
369
|
-
}
|
|
370
|
-
}
|
|
371
|
-
if ((_6 = clause.prn) === null || _6 === void 0 ? void 0 : _6.enabled) {
|
|
372
|
-
dosage.asNeededBoolean = true;
|
|
373
|
-
const reasons = ((_7 = clause.prn.reasons) === null || _7 === void 0 ? void 0 : _7.length) ? clause.prn.reasons : clause.prn.reason ? [clause.prn.reason] : [];
|
|
374
|
-
if (reasons.length) {
|
|
375
|
-
dosage.asNeededFor = [];
|
|
376
|
-
for (const reason of reasons) {
|
|
377
|
-
const concept = {};
|
|
378
|
-
if (reason.text) {
|
|
379
|
-
concept.text = reason.text;
|
|
380
|
-
}
|
|
381
|
-
if ((_8 = reason.coding) === null || _8 === void 0 ? void 0 : _8.code) {
|
|
382
|
-
concept.coding = [
|
|
383
|
-
{
|
|
384
|
-
system: (_9 = reason.coding.system) !== null && _9 !== void 0 ? _9 : SNOMED_SYSTEM,
|
|
385
|
-
code: reason.coding.code,
|
|
386
|
-
display: reason.coding.display
|
|
387
|
-
}
|
|
388
|
-
];
|
|
389
|
-
}
|
|
390
|
-
dosage.asNeededFor.push(concept);
|
|
391
|
-
}
|
|
392
|
-
}
|
|
393
|
-
}
|
|
394
|
-
const longText = textOverride !== null && textOverride !== void 0 ? textOverride : (0, format_1.formatCanonicalClause)(clause, "long");
|
|
395
|
-
if (longText) {
|
|
396
|
-
dosage.text = longText;
|
|
397
|
-
}
|
|
398
|
-
if (clause.patientInstruction) {
|
|
399
|
-
dosage.patientInstruction = clause.patientInstruction;
|
|
400
|
-
}
|
|
401
|
-
return dosage;
|
|
402
|
-
}
|
|
403
|
-
function toFhir(state) {
|
|
404
|
-
var _a;
|
|
405
|
-
const clauses = state.clauses;
|
|
406
|
-
const clause = (_a = clauses[0]) !== null && _a !== void 0 ? _a : createEmptyCanonicalClause(state.input);
|
|
407
|
-
return canonicalToFhir(clause);
|
|
408
|
-
}
|
|
409
|
-
function canonicalFromFhir(dosage) {
|
|
410
|
-
var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o, _p, _q, _r, _s, _t, _u, _v, _w, _x, _y, _z, _0, _1, _2, _3, _4, _5, _6, _7, _8, _9;
|
|
411
|
-
const rawText = (_a = dosage.text) !== null && _a !== void 0 ? _a : "";
|
|
412
|
-
const clause = createEmptyCanonicalClause(rawText);
|
|
413
|
-
let routeCode;
|
|
414
|
-
const routeCoding = (_c = (_b = dosage.route) === null || _b === void 0 ? void 0 : _b.coding) === null || _c === void 0 ? void 0 : _c.find((code) => code.system === SNOMED_SYSTEM);
|
|
415
|
-
if (routeCoding === null || routeCoding === void 0 ? void 0 : routeCoding.code) {
|
|
416
|
-
routeCode = maps_1.ROUTE_BY_SNOMED[routeCoding.code];
|
|
417
|
-
}
|
|
418
|
-
if (routeCode || ((_d = dosage.route) === null || _d === void 0 ? void 0 : _d.text)) {
|
|
419
|
-
clause.route = {
|
|
420
|
-
code: routeCode,
|
|
421
|
-
text: (_f = (_e = dosage.route) === null || _e === void 0 ? void 0 : _e.text) !== null && _f !== void 0 ? _f : (routeCode ? maps_1.ROUTE_TEXT[routeCode] : undefined)
|
|
422
|
-
};
|
|
423
|
-
}
|
|
424
|
-
const siteCoding = selectPreferredSiteCoding(dosage.site);
|
|
425
|
-
if (((_g = dosage.site) === null || _g === void 0 ? void 0 : _g.text) || (siteCoding === null || siteCoding === void 0 ? void 0 : siteCoding.code)) {
|
|
426
|
-
clause.site = {
|
|
427
|
-
text: (_h = dosage.site) === null || _h === void 0 ? void 0 : _h.text,
|
|
428
|
-
coding: (siteCoding === null || siteCoding === void 0 ? void 0 : siteCoding.code)
|
|
429
|
-
? {
|
|
430
|
-
code: siteCoding.code,
|
|
431
|
-
display: siteCoding.display,
|
|
432
|
-
system: siteCoding.system
|
|
433
|
-
}
|
|
434
|
-
: undefined,
|
|
435
|
-
source: "text"
|
|
436
|
-
};
|
|
437
|
-
}
|
|
438
|
-
const methodCoding = selectFirstCodingWithCode(dosage.method);
|
|
439
|
-
if (((_j = dosage.method) === null || _j === void 0 ? void 0 : _j.text) || ((_k = dosage.method) === null || _k === void 0 ? void 0 : _k._text) || (methodCoding === null || methodCoding === void 0 ? void 0 : methodCoding.code)) {
|
|
440
|
-
clause.method = {
|
|
441
|
-
text: (_l = dosage.method) === null || _l === void 0 ? void 0 : _l.text,
|
|
442
|
-
_text: (0, fhir_translations_1.clonePrimitiveElement)((_m = dosage.method) === null || _m === void 0 ? void 0 : _m._text),
|
|
443
|
-
coding: (methodCoding === null || methodCoding === void 0 ? void 0 : methodCoding.code)
|
|
444
|
-
? {
|
|
445
|
-
code: methodCoding.code,
|
|
446
|
-
display: methodCoding.display,
|
|
447
|
-
system: methodCoding.system,
|
|
448
|
-
_display: (0, fhir_translations_1.clonePrimitiveElement)(methodCoding._display)
|
|
449
|
-
}
|
|
450
|
-
: undefined
|
|
451
|
-
};
|
|
452
|
-
}
|
|
453
|
-
const repeat = (_o = dosage.timing) === null || _o === void 0 ? void 0 : _o.repeat;
|
|
454
|
-
const timingBounds = extractCanonicalTimingBounds(repeat);
|
|
455
|
-
if (((_s = (_r = (_q = (_p = dosage.timing) === null || _p === void 0 ? void 0 : _p.code) === null || _q === void 0 ? void 0 : _q.coding) === null || _r === void 0 ? void 0 : _r[0]) === null || _s === void 0 ? void 0 : _s.code) ||
|
|
456
|
-
(repeat === null || repeat === void 0 ? void 0 : repeat.count) !== undefined ||
|
|
457
|
-
(repeat === null || repeat === void 0 ? void 0 : repeat.boundsDuration) ||
|
|
458
|
-
(repeat === null || repeat === void 0 ? void 0 : repeat.boundsRange) ||
|
|
459
|
-
(repeat === null || repeat === void 0 ? void 0 : repeat.frequency) !== undefined ||
|
|
460
|
-
(repeat === null || repeat === void 0 ? void 0 : repeat.frequencyMax) !== undefined ||
|
|
461
|
-
(repeat === null || repeat === void 0 ? void 0 : repeat.period) !== undefined ||
|
|
462
|
-
(repeat === null || repeat === void 0 ? void 0 : repeat.periodMax) !== undefined ||
|
|
463
|
-
(repeat === null || repeat === void 0 ? void 0 : repeat.periodUnit) ||
|
|
464
|
-
((_t = repeat === null || repeat === void 0 ? void 0 : repeat.dayOfWeek) === null || _t === void 0 ? void 0 : _t.length) ||
|
|
465
|
-
((_u = repeat === null || repeat === void 0 ? void 0 : repeat.when) === null || _u === void 0 ? void 0 : _u.length) ||
|
|
466
|
-
((_v = repeat === null || repeat === void 0 ? void 0 : repeat.timeOfDay) === null || _v === void 0 ? void 0 : _v.length)) {
|
|
467
|
-
clause.schedule = {
|
|
468
|
-
timingCode: (_z = (_y = (_x = (_w = dosage.timing) === null || _w === void 0 ? void 0 : _w.code) === null || _x === void 0 ? void 0 : _x.coding) === null || _y === void 0 ? void 0 : _y[0]) === null || _z === void 0 ? void 0 : _z.code,
|
|
469
|
-
count: repeat === null || repeat === void 0 ? void 0 : repeat.count,
|
|
470
|
-
duration: timingBounds.duration,
|
|
471
|
-
durationMax: timingBounds.durationMax,
|
|
472
|
-
durationUnit: timingBounds.durationUnit,
|
|
473
|
-
frequency: repeat === null || repeat === void 0 ? void 0 : repeat.frequency,
|
|
474
|
-
frequencyMax: repeat === null || repeat === void 0 ? void 0 : repeat.frequencyMax,
|
|
475
|
-
period: repeat === null || repeat === void 0 ? void 0 : repeat.period,
|
|
476
|
-
periodMax: repeat === null || repeat === void 0 ? void 0 : repeat.periodMax,
|
|
477
|
-
periodUnit: repeat === null || repeat === void 0 ? void 0 : repeat.periodUnit,
|
|
478
|
-
dayOfWeek: (repeat === null || repeat === void 0 ? void 0 : repeat.dayOfWeek) ? [...repeat.dayOfWeek] : undefined,
|
|
479
|
-
when: (repeat === null || repeat === void 0 ? void 0 : repeat.when) ? [...repeat.when] : undefined,
|
|
480
|
-
timeOfDay: (repeat === null || repeat === void 0 ? void 0 : repeat.timeOfDay) ? [...repeat.timeOfDay] : undefined
|
|
481
|
-
};
|
|
482
|
-
clause.warnings = appendWarning(clause.warnings, timingBounds.warning);
|
|
483
|
-
}
|
|
484
|
-
const doseAndRate = (_0 = dosage.doseAndRate) === null || _0 === void 0 ? void 0 : _0[0];
|
|
485
|
-
if (doseAndRate === null || doseAndRate === void 0 ? void 0 : doseAndRate.doseRange) {
|
|
486
|
-
const extracted = extractCanonicalDoseRange(doseAndRate.doseRange);
|
|
487
|
-
if (extracted.range) {
|
|
488
|
-
clause.dose = {
|
|
489
|
-
range: extracted.range,
|
|
490
|
-
unit: extracted.unit
|
|
491
|
-
};
|
|
492
|
-
clause.warnings = appendWarning(clause.warnings, extracted.warning);
|
|
493
|
-
}
|
|
494
|
-
}
|
|
495
|
-
else if (((_1 = doseAndRate === null || doseAndRate === void 0 ? void 0 : doseAndRate.doseQuantity) === null || _1 === void 0 ? void 0 : _1.value) !== undefined) {
|
|
496
|
-
clause.dose = {
|
|
497
|
-
value: doseAndRate.doseQuantity.value,
|
|
498
|
-
unit: doseAndRate.doseQuantity.unit
|
|
499
|
-
};
|
|
500
|
-
}
|
|
501
|
-
const prnReasons = ((_2 = dosage.asNeededFor) === null || _2 === void 0 ? void 0 : _2.length)
|
|
502
|
-
? dosage.asNeededFor.map((concept) => {
|
|
503
|
-
var _a;
|
|
504
|
-
const coding = (_a = concept.coding) === null || _a === void 0 ? void 0 : _a.find((code) => Boolean(code.code));
|
|
505
|
-
return {
|
|
506
|
-
text: concept.text,
|
|
507
|
-
coding: (coding === null || coding === void 0 ? void 0 : coding.code)
|
|
508
|
-
? {
|
|
509
|
-
code: coding.code,
|
|
510
|
-
display: coding.display,
|
|
511
|
-
system: coding.system
|
|
512
|
-
}
|
|
513
|
-
: undefined
|
|
514
|
-
};
|
|
515
|
-
})
|
|
516
|
-
: undefined;
|
|
517
|
-
const primaryReason = prnReasons === null || prnReasons === void 0 ? void 0 : prnReasons[0];
|
|
518
|
-
if (dosage.asNeededBoolean || (primaryReason === null || primaryReason === void 0 ? void 0 : primaryReason.text) || ((_3 = primaryReason === null || primaryReason === void 0 ? void 0 : primaryReason.coding) === null || _3 === void 0 ? void 0 : _3.code)) {
|
|
519
|
-
clause.prn = {
|
|
520
|
-
enabled: Boolean(dosage.asNeededBoolean || (primaryReason === null || primaryReason === void 0 ? void 0 : primaryReason.text) || ((_4 = primaryReason === null || primaryReason === void 0 ? void 0 : primaryReason.coding) === null || _4 === void 0 ? void 0 : _4.code)),
|
|
521
|
-
reason: (prnReasons === null || prnReasons === void 0 ? void 0 : prnReasons.length) === 1
|
|
522
|
-
? primaryReason
|
|
523
|
-
: (prnReasons === null || prnReasons === void 0 ? void 0 : prnReasons.length)
|
|
524
|
-
? { text: (0, prn_1.joinCanonicalPrnReasonTexts)(prnReasons) }
|
|
525
|
-
: undefined,
|
|
526
|
-
reasons: (prnReasons === null || prnReasons === void 0 ? void 0 : prnReasons.length) ? prnReasons : undefined
|
|
527
|
-
};
|
|
528
|
-
}
|
|
529
|
-
if ((_5 = dosage.additionalInstruction) === null || _5 === void 0 ? void 0 : _5.length) {
|
|
530
|
-
clause.additionalInstructions = [];
|
|
531
|
-
for (const instruction of dosage.additionalInstruction) {
|
|
532
|
-
const coding = (_6 = instruction.coding) === null || _6 === void 0 ? void 0 : _6.find((code) => Boolean(code.code));
|
|
533
|
-
clause.additionalInstructions.push({
|
|
534
|
-
text: instruction.text,
|
|
535
|
-
coding: (coding === null || coding === void 0 ? void 0 : coding.code)
|
|
536
|
-
? {
|
|
537
|
-
code: coding.code,
|
|
538
|
-
display: coding.display,
|
|
539
|
-
system: coding.system
|
|
540
|
-
}
|
|
541
|
-
: undefined,
|
|
542
|
-
frames: (coding === null || coding === void 0 ? void 0 : coding.code)
|
|
543
|
-
? (0, advice_1.buildAdditionalInstructionFramesFromCoding)((_7 = coding.system) !== null && _7 !== void 0 ? _7 : SNOMED_SYSTEM, coding.code, (_9 = (_8 = instruction.text) !== null && _8 !== void 0 ? _8 : coding.display) !== null && _9 !== void 0 ? _9 : "", clause.raw)
|
|
544
|
-
: undefined
|
|
545
|
-
});
|
|
546
|
-
}
|
|
547
|
-
}
|
|
548
|
-
if (dosage.patientInstruction) {
|
|
549
|
-
clause.patientInstruction = dosage.patientInstruction;
|
|
550
|
-
}
|
|
551
|
-
return clause;
|
|
552
|
-
}
|
|
553
|
-
function parserStateFromFhir(dosage) {
|
|
554
|
-
var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o, _p, _q, _r, _s, _t, _u, _v, _w, _x, _y, _z, _0, _1, _2, _3, _4, _5, _6, _7, _8, _9, _10, _11, _12;
|
|
555
|
-
const state = new parser_state_1.ParserState((_a = dosage.text) !== null && _a !== void 0 ? _a : "", []);
|
|
556
|
-
const timingBounds = extractCanonicalTimingBounds((_b = dosage.timing) === null || _b === void 0 ? void 0 : _b.repeat);
|
|
557
|
-
state.timeOfDay = ((_d = (_c = dosage.timing) === null || _c === void 0 ? void 0 : _c.repeat) === null || _d === void 0 ? void 0 : _d.timeOfDay)
|
|
558
|
-
? [...dosage.timing.repeat.timeOfDay]
|
|
559
|
-
: [];
|
|
560
|
-
state.timingCode = (_h = (_g = (_f = (_e = dosage.timing) === null || _e === void 0 ? void 0 : _e.code) === null || _f === void 0 ? void 0 : _f.coding) === null || _g === void 0 ? void 0 : _g[0]) === null || _h === void 0 ? void 0 : _h.code;
|
|
561
|
-
state.count = (_k = (_j = dosage.timing) === null || _j === void 0 ? void 0 : _j.repeat) === null || _k === void 0 ? void 0 : _k.count;
|
|
562
|
-
state.duration = timingBounds.duration;
|
|
563
|
-
state.durationMax = timingBounds.durationMax;
|
|
564
|
-
state.durationUnit = timingBounds.durationUnit;
|
|
565
|
-
state.frequency = (_m = (_l = dosage.timing) === null || _l === void 0 ? void 0 : _l.repeat) === null || _m === void 0 ? void 0 : _m.frequency;
|
|
566
|
-
state.frequencyMax = (_p = (_o = dosage.timing) === null || _o === void 0 ? void 0 : _o.repeat) === null || _p === void 0 ? void 0 : _p.frequencyMax;
|
|
567
|
-
state.period = (_r = (_q = dosage.timing) === null || _q === void 0 ? void 0 : _q.repeat) === null || _r === void 0 ? void 0 : _r.period;
|
|
568
|
-
state.periodMax = (_t = (_s = dosage.timing) === null || _s === void 0 ? void 0 : _s.repeat) === null || _t === void 0 ? void 0 : _t.periodMax;
|
|
569
|
-
state.periodUnit = (_v = (_u = dosage.timing) === null || _u === void 0 ? void 0 : _u.repeat) === null || _v === void 0 ? void 0 : _v.periodUnit;
|
|
570
|
-
state.routeText = (_w = dosage.route) === null || _w === void 0 ? void 0 : _w.text;
|
|
571
|
-
state.siteText = (_x = dosage.site) === null || _x === void 0 ? void 0 : _x.text;
|
|
572
|
-
state.methodText = (_y = dosage.method) === null || _y === void 0 ? void 0 : _y.text;
|
|
573
|
-
state.methodTextElement = (0, fhir_translations_1.clonePrimitiveElement)((_z = dosage.method) === null || _z === void 0 ? void 0 : _z._text);
|
|
574
|
-
state.patientInstruction = dosage.patientInstruction;
|
|
575
|
-
state.asNeeded = dosage.asNeededBoolean;
|
|
576
|
-
if ((_0 = dosage.asNeededFor) === null || _0 === void 0 ? void 0 : _0.length) {
|
|
577
|
-
const prnReasons = dosage.asNeededFor.map((concept) => {
|
|
578
|
-
const coding = selectFirstCodingWithCode(concept);
|
|
579
|
-
return {
|
|
580
|
-
text: concept.text,
|
|
581
|
-
coding: (coding === null || coding === void 0 ? void 0 : coding.code)
|
|
582
|
-
? {
|
|
583
|
-
code: coding.code,
|
|
584
|
-
display: coding.display,
|
|
585
|
-
system: coding.system,
|
|
586
|
-
_display: (0, fhir_translations_1.clonePrimitiveElement)(coding._display)
|
|
587
|
-
}
|
|
588
|
-
: undefined
|
|
589
|
-
};
|
|
590
|
-
});
|
|
591
|
-
state.asNeededReasons = prnReasons;
|
|
592
|
-
state.asNeededReason = (0, prn_1.joinCanonicalPrnReasonTexts)(prnReasons);
|
|
593
|
-
}
|
|
594
|
-
if ((_2 = (_1 = dosage.timing) === null || _1 === void 0 ? void 0 : _1.repeat) === null || _2 === void 0 ? void 0 : _2.dayOfWeek) {
|
|
595
|
-
state.dayOfWeek.push(...dosage.timing.repeat.dayOfWeek);
|
|
596
|
-
}
|
|
597
|
-
if ((_4 = (_3 = dosage.timing) === null || _3 === void 0 ? void 0 : _3.repeat) === null || _4 === void 0 ? void 0 : _4.when) {
|
|
598
|
-
const whenValues = dosage.timing.repeat.when.filter((value) => (0, array_1.arrayIncludes)((0, object_1.objectValues)(types_1.EventTiming), value));
|
|
599
|
-
state.when.push(...whenValues);
|
|
600
|
-
}
|
|
601
|
-
const routeCoding = (_6 = (_5 = dosage.route) === null || _5 === void 0 ? void 0 : _5.coding) === null || _6 === void 0 ? void 0 : _6.find((code) => code.system === SNOMED_SYSTEM);
|
|
602
|
-
if (routeCoding === null || routeCoding === void 0 ? void 0 : routeCoding.code) {
|
|
603
|
-
// Translate SNOMED codings back into the simplified enum for round-trip fidelity.
|
|
604
|
-
const mapped = maps_1.ROUTE_BY_SNOMED[routeCoding.code];
|
|
605
|
-
if (mapped) {
|
|
606
|
-
state.routeCode = mapped;
|
|
607
|
-
state.routeText = maps_1.ROUTE_TEXT[mapped];
|
|
608
|
-
}
|
|
609
|
-
}
|
|
610
|
-
const siteCoding = selectPreferredSiteCoding(dosage.site);
|
|
611
|
-
if (siteCoding === null || siteCoding === void 0 ? void 0 : siteCoding.code) {
|
|
612
|
-
state.siteCoding = {
|
|
613
|
-
code: siteCoding.code,
|
|
614
|
-
display: siteCoding.display,
|
|
615
|
-
system: siteCoding.system
|
|
616
|
-
};
|
|
617
|
-
state.siteSource = "text";
|
|
618
|
-
}
|
|
619
|
-
else if ((_7 = dosage.site) === null || _7 === void 0 ? void 0 : _7.text) {
|
|
620
|
-
state.siteSource = "text";
|
|
621
|
-
}
|
|
622
|
-
const methodCoding = selectFirstCodingWithCode(dosage.method);
|
|
623
|
-
if (methodCoding === null || methodCoding === void 0 ? void 0 : methodCoding.code) {
|
|
624
|
-
state.methodCoding = {
|
|
625
|
-
code: methodCoding.code,
|
|
626
|
-
display: methodCoding.display,
|
|
627
|
-
system: methodCoding.system,
|
|
628
|
-
_display: (0, fhir_translations_1.clonePrimitiveElement)(methodCoding._display)
|
|
629
|
-
};
|
|
630
|
-
}
|
|
631
|
-
if (((_8 = dosage.asNeededFor) === null || _8 === void 0 ? void 0 : _8.length) === 1) {
|
|
632
|
-
const reasonCoding = selectFirstCodingWithCode(dosage.asNeededFor[0]);
|
|
633
|
-
if (reasonCoding === null || reasonCoding === void 0 ? void 0 : reasonCoding.code) {
|
|
634
|
-
const defaultDef = (0, maps_1.findPrnReasonDefinitionByCoding)((_9 = reasonCoding.system) !== null && _9 !== void 0 ? _9 : SNOMED_SYSTEM, reasonCoding.code);
|
|
635
|
-
state.asNeededReasonCoding = {
|
|
636
|
-
code: reasonCoding.code,
|
|
637
|
-
display: reasonCoding.display,
|
|
638
|
-
system: reasonCoding.system,
|
|
639
|
-
i18n: defaultDef === null || defaultDef === void 0 ? void 0 : defaultDef.i18n
|
|
640
|
-
};
|
|
641
|
-
}
|
|
642
|
-
}
|
|
643
|
-
if ((_10 = dosage.additionalInstruction) === null || _10 === void 0 ? void 0 : _10.length) {
|
|
644
|
-
state.additionalInstructions = dosage.additionalInstruction.map((concept) => {
|
|
645
|
-
var _a, _b, _c, _d, _e, _f;
|
|
646
|
-
const coding = selectFirstCodingWithCode(concept);
|
|
647
|
-
const defaultDef = (coding === null || coding === void 0 ? void 0 : coding.code)
|
|
648
|
-
? (0, advice_1.findAdditionalInstructionDefinitionByCoding)((_a = coding.system) !== null && _a !== void 0 ? _a : SNOMED_SYSTEM, coding.code)
|
|
649
|
-
: undefined;
|
|
650
|
-
return {
|
|
651
|
-
text: concept.text,
|
|
652
|
-
coding: (coding === null || coding === void 0 ? void 0 : coding.code)
|
|
653
|
-
? {
|
|
654
|
-
code: coding.code,
|
|
655
|
-
display: coding.display,
|
|
656
|
-
system: coding.system,
|
|
657
|
-
i18n: defaultDef === null || defaultDef === void 0 ? void 0 : defaultDef.i18n
|
|
658
|
-
}
|
|
659
|
-
: undefined,
|
|
660
|
-
frames: (coding === null || coding === void 0 ? void 0 : coding.code)
|
|
661
|
-
? (0, advice_1.buildAdditionalInstructionFramesFromCoding)((_b = coding.system) !== null && _b !== void 0 ? _b : SNOMED_SYSTEM, coding.code, (_d = (_c = concept.text) !== null && _c !== void 0 ? _c : coding.display) !== null && _d !== void 0 ? _d : "", { start: 0, end: ((_f = (_e = concept.text) !== null && _e !== void 0 ? _e : coding.display) !== null && _f !== void 0 ? _f : "").length })
|
|
662
|
-
: undefined
|
|
663
|
-
};
|
|
664
|
-
});
|
|
665
|
-
}
|
|
666
|
-
if (timingBounds.warning) {
|
|
667
|
-
const nextWarnings = appendWarning(state.warnings, timingBounds.warning);
|
|
668
|
-
if (nextWarnings) {
|
|
669
|
-
state.warnings = nextWarnings;
|
|
670
|
-
}
|
|
671
|
-
}
|
|
672
|
-
const doseAndRate = (_11 = dosage.doseAndRate) === null || _11 === void 0 ? void 0 : _11[0];
|
|
673
|
-
if (doseAndRate === null || doseAndRate === void 0 ? void 0 : doseAndRate.doseRange) {
|
|
674
|
-
const extracted = extractCanonicalDoseRange(doseAndRate.doseRange);
|
|
675
|
-
if (extracted.range) {
|
|
676
|
-
state.primaryClause.dose = {
|
|
677
|
-
range: extracted.range,
|
|
678
|
-
unit: extracted.unit
|
|
679
|
-
};
|
|
680
|
-
state.warnings = (_12 = appendWarning(state.warnings, extracted.warning)) !== null && _12 !== void 0 ? _12 : state.warnings;
|
|
681
|
-
}
|
|
682
|
-
}
|
|
683
|
-
else if (doseAndRate === null || doseAndRate === void 0 ? void 0 : doseAndRate.doseQuantity) {
|
|
684
|
-
const dose = doseAndRate.doseQuantity;
|
|
685
|
-
if (dose.value !== undefined) {
|
|
686
|
-
state.dose = dose.value;
|
|
687
|
-
}
|
|
688
|
-
if (dose.unit) {
|
|
689
|
-
state.unit = dose.unit;
|
|
690
|
-
}
|
|
691
|
-
}
|
|
692
|
-
return state;
|
|
693
|
-
}
|