emdash-emit 0.1.8 → 0.1.10

package/README.md

@@ -32,13 +32,16 @@
   - [Media Management & Upload Workflow](#media-management--upload-workflow)
 - [🤖 The Golden Path for AI & Humans (4-Step Cycle)](#-the-golden-path-for-ai--humans-4-step-cycle)
   - [The 4-Step Authoring Cycle](#the-4-step-authoring-cycle)
-  - [Preflight Safety Guardrails (G1–G11)](#preflight-safety-guardrails-g1g11)
+  - [Preflight Safety Guardrails (G1–G12)](#preflight-safety-guardrails-g1g12)
 - [🛠 CLI Command Reference](#-cli-command-reference)
   - [`emit init`](#emit-init)
   - [`emit profile`](#emit-profile)
   - [`emit new`](#emit-new)
   - [`emit pull`](#emit-pull)
   - [`emit push`](#emit-push)
+  - [`emit delete`](#emit-delete)
+  - [`emit conflicts`](#emit-conflicts)
+  - [`emit doctor`](#emit-doctor)
   - [`emit status`](#emit-status)
   - [`emit diff`](#emit-diff)
   - [`emit pull-taxonomies`](#emit-pull-taxonomies)
@@ -193,6 +196,9 @@ emit profile add my-blog \
 > [!NOTE]
 > Profiles are securely stored with `0600` permissions at `~/.config/emit/profiles.yaml` (on macOS / Linux) or `%USERPROFILE%\.config\emit\profiles.yaml` (on Windows).
 
+> [!NOTE]
+> **`emit profile add` updates in place.** Re-running it with only `--origin` (for example after rotating a domain) keeps the stored `--token` and the `--workspace` link that `emit init` created, and reports `Kept the existing token and workspace link`. Pass `--token`/`--workspace` explicitly to replace them; an empty `--token ''` clears the credential on purpose.
+
 ### 2. Initialize a Workspace
 
 Navigate to your local repository directory and initialize it:
@@ -202,7 +208,7 @@ cd /path/to/local/blog-repo
 emit init
 ```
 
-This creates the `.emit/` directory with a default `config.json` and initializes the local baseline cache SQLite database (`.emit/cache.db`).
+This creates the `.emit/` directory with `config.json` (inheriting `origin` from your resolved profile when `--origin` is omitted, and automatically linking `workspace` back into `~/.config/emit/profiles.yaml` unless `--no-link` is passed) and initializes the local baseline cache SQLite database (`.emit/cache.db`).
 
 ### 3. Multi-Site Management (Directory-Driven & Zero Friction)
 
@@ -222,7 +228,7 @@ emit profile list
 ```
 
 **How Automatic Profile Resolution Works:**
-1. **Directory-Driven Auto Detection (Recommended)**: When you `cd ~/blogs/personal` and run `emit pull`, `emit push`, or launch an AI agent, Emit detects your current folder and automatically uses the `personal` profile. When you `cd ~/blogs/work`, it seamlessly connects to `work`.
+1. **Directory-Driven Auto Detection (Recommended)**: When you `cd ~/blogs/personal` and run `emit pull`, `emit push`, or launch an AI agent, Emit detects your current folder and automatically uses the `personal` profile. When you `cd ~/blogs/work`, it seamlessly connects to `work`. Directory comparison is symlink-safe (`fs.realpathSync`), so a workspace reached through a symlinked path (or a macOS `/tmp`-style alias) still resolves to the right profile.
 2. **Explicit Profile Flag**: You can explicitly specify `--profile <name>` (or pass `profile: "<name>"` in MCP) from any directory to override automatic detection.
 3. **Ambiguity Safeguard**: If you run a command outside of any registered workspace and omit `--profile`, Emit aborts with an `AmbiguousProfileError` instead of guessing or silently pushing to the wrong site.
 
@@ -230,7 +236,7 @@ emit profile list
 
 Emit resolves authentication credentials using a strict 4-tier priority chain (`src/client/auth.ts`):
 
-1. **Environment Variables (`EMDASH_TOKEN` or `EMDASH_API_TOKEN`, plus optional `EMDASH_ORIGIN`)**: Highest priority; ideal for CI/CD pipelines and one-off overrides.
+1. **Environment Variables (`EMDASH_TOKEN` or `EMDASH_API_TOKEN`)**: Highest priority; ideal for CI/CD pipelines and one-off overrides. `EMDASH_ORIGIN` (and `EMDASH_WORKSPACE`) are read here as well and documented under [Origin Resolution Precedence](#origin-resolution-precedence).
 2. **Site Profile Registry (`~/.config/emit/profiles.yaml`)**: Matched via `--profile <name>` (or MCP `profile`), current workspace directory auto-detection, or a single registered profile.
 3. **EmDash CLI Credentials (`~/.config/emdash/auth.json`)**: Fallback when no token is configured in the profile.
 4. **Emit Custom Credentials (`~/.config/emit/credentials.json`)**: Final fallback.
@@ -238,6 +244,19 @@ Emit resolves authentication credentials using a strict 4-tier priority chain (`
 **Automatic OAuth Token Refresh on HTTP 401 (`src/client/http.ts`)**:
 When credentials include a `refresh_token` (such as OAuth sessions in `~/.config/emdash/auth.json` or `~/.config/emit/credentials.json`) and a request returns `401 Unauthorized`, Emit automatically exchanges the `refresh_token` at `POST /_emdash/api/auth/token` (`grant_type: "refresh_token"`), persists the refreshed token back to `auth.json` when applicable, and transparently retries the request once.
 
+#### Origin Resolution Precedence
+
+The target instance (`origin`) is resolved by one shared function (`resolveOriginPriority()` in `src/cli/context.ts`, reused by the MCP server) so CLI and MCP always agree:
+
+1. **Explicitly selected profile** — `--profile <name>` (or MCP `profile: "<name>"`)
+2. **`EMDASH_ORIGIN`** — overrides an *implicitly* resolved profile so CI/staging overrides actually take effect
+3. **Auto-resolved profile** — current-directory match, unique origin match, or the single registered profile
+4. **Resolved auth origin** — carried by `~/.config/emdash/auth.json` / `~/.config/emit/credentials.json`
+5. **Workspace `.emit/config.json`** → then the `https://example.com` sentinel default
+
+> [!NOTE]
+> Every silent override is surfaced as a `⚠️ Warning` naming the **real source** of each value (`.emit/config.json` values are never mislabeled as `EMDASH_ORIGIN` or the reverse). When you select `--profile` explicitly, `EMDASH_ORIGIN` is ignored **and reported**. Comparisons ignore trailing slashes. `emit init` follows the same ranking (`--origin` > `EMDASH_ORIGIN` > auto-resolved profile) and refuses to link the workspace to a profile whose origin does not match the initialized origin.
+
 ### 5. Workspace Configuration (`.emit/config.json`)
 
 Running `emit init` generates `.emit/config.json` with the following keys (`src/utils/config.ts`):
@@ -255,10 +274,10 @@ Running `emit init` generates `.emit/config.json` with the following keys (`src/
 
 | Key | Default | Description |
 | --- | --- | --- |
-| `origin` | `"https://example.com"` | Base URL of the target EmDash instance (overridden by `EMDASH_ORIGIN` or active profile) |
+| `origin` | `"https://example.com"` | Base URL of the target EmDash instance, exactly as written to disk. It is never rewritten in-memory by `EMDASH_ORIGIN`; see [Origin Resolution Precedence](#origin-resolution-precedence) for how the effective origin is chosen |
 | `defaultCollection` | `"posts"` | Default content collection when `--collection` is omitted |
 | `defaultLocale` | `"ja"` | Default locale used when scaffolding new drafts via `emit new` / `sync_new` |
-| `postsSyncLimit` | `100` | Sliding window size for batch article pulls (also supports legacy `syncLimit` fallback) |
+| `postsSyncLimit` | `100` | Sliding window size for batch article pulls (when `status: all`, fetches up to `postsSyncLimit` `published` + up to `postsSyncLimit` `draft` articles in parallel; also supports legacy `syncLimit` fallback) |
 | `mediaSyncLimit` | `300` | Default maximum items fetched by `emit pull-media` / `sync_pull_media` |
 | `concurrency` | `8` | Parallel HTTP fetch concurrency during batch pulls |
 
@@ -320,8 +339,10 @@ your-blog/
 └── posts/                          # Local Markdown Articles (<yyyyMMdd>_<ulid>-<title>.md)
     ├── draft/                      # Draft articles (named after title; falls back to slug if empty)
     │   └── 20261104_01M6...-My-New-Post.md
-    └── published/                  # Live published articles
-        └── 20261015_01M5...-Getting-Started.md
+    ├── published/                  # Live published articles
+    │   └── 20261015_01M5...-Getting-Started.md
+    └── conflicts/                  # Read-only rescue copies of divergent local content (written by pull; never pushed or pruned)
+        └── 20261101_01M5...-Getting-Started.conflict.md
 
 ```
 
@@ -333,7 +354,7 @@ Emit maintains a local SQLite database via Node.js built-in `node:sqlite` (`src/
 | --- | --- |
 | `entries` | Caches the latest remote JSON envelope and revision (`rev`) for each synced article |
 | `base_snapshots` | Stores the baseline Markdown body and baseline frontmatter at the last synced revision to power Hybrid 3-Way Merge (`frontmatter_yaml` holds a **JSON-encoded** `Frontmatter` object, not YAML text) |
-| `sync_state` | Tracks each article's workspace-relative file path and SHA-256 content hash to detect local modifications (`synced` vs `modified`) |
+| `sync_state` | Tracks each article's workspace-relative file path and SHA-256 content hash to detect local modifications (`synced` vs `modified` vs `untracked`, plus `invalid` when YAML frontmatter fails parsing; `invalid` files are excluded from `emit push --all`, cached `invalid` files are automatically self-healed on batch `emit pull` / `sync_pull`, and uncached `invalid` files outside the sliding window can be repaired via `emit pull <ULID>` or `sync_pull(id: "<ULID>")`) |
 | `bylines` | Caches remote author records (`id`, `slug`, `display_name`, `is_guest`) synced automatically via `/_emdash/api/mcp` (`byline_list`) on pull, enabling slug ⇔ ULID resolution and default author selection |
 | `media_state` | Tracks offline draft image uploads (`local_hash`, `media_id`, `storage_key`, `url`, `workspace_path`, `status`: `pending` \| `uploaded` \| `ready` \| `failed`) for idempotency, retry recovery, and cross-article asset reuse |
 
@@ -487,9 +508,9 @@ Whether you are a human developer or an autonomous AI agent (Antigravity, Claude
 * To push a draft: `emit push posts/draft/<filename>.md`
 * To publish live: update `status: published` and run `emit push posts/draft/<filename>.md --allow-publish`.
 
-### Preflight Safety Guardrails (G1–G11)
+### Preflight Safety Guardrails (G1–G14)
 
-To ensure autonomous AI agents and automated scripts cannot corrupt workspace state or accidentally publish unintended content, Emit enforces 11 strict preflight guardrails before executing any write operation:
+To ensure autonomous AI agents and automated scripts cannot corrupt workspace state or accidentally publish unintended content, Emit enforces 14 strict preflight guardrails before executing any write operation:
 
 | Guard | Code Name | Description | Severity |
 | --- | --- | --- | --- |
@@ -504,6 +525,10 @@ To ensure autonomous AI agents and automated scripts cannot corrupt workspace st
 | **G9** | `MODIFIED_OPAQUE_BLOCK` | Verifies that `<!--ec:block ... -->` opaque fences have not been tampered with or corrupted | Error |
 | **G10** | `INVALID_FEATURED_IMAGE` | Verifies that `featuredImage` is a 26-character canonical media ULID (normalized to uppercase) or `null`. A remote media URL that contains a ULID is resolved with a warning; local file paths and malformed values are rejected | Error |
 | **G11** | `LOCAL_IMAGE_AUTO_UPLOAD` (`MISSING_LOCAL_IMAGE_FILE` / `INVALID_LOCAL_IMAGE_TYPE` / `LOCAL_IMAGE_SIZE_EXCEEDED` / `PROMOTED_MEDIA_NOT_FOUND_REMOTE` / `[MEDIA_EXISTENCE_UNVERIFIED]`) | Detects standalone `media/drafts/<file>` image lines (or reuses an already-promoted `media/` asset across articles), validates file existence, extension, and size (≤ 50 MiB), queues them for automatic upload, URL rewrite, and `media/` promotion during `push`, and verifies every reused asset against `GET /_emdash/api/media/{id}` before its URL is baked into the body | Info / Warning / Error |
+| **G12** | `QUARANTINED_COPY_NOT_PUSHABLE` | Refuses to push a rescue copy under `posts/conflicts/` (written by a pull that found divergent local content) before any network request, because it would overwrite the canonical article of the same ULID with stale content and recreate duplicate local files | Error |
+| **G13** | `CANONICAL_HAS_UNPUSHED_EDITS` | Protects canonical articles from being silently overwritten during conflict resolution (`accept-local`) when unpushed local modifications exist; requires explicit `--force` (`force: true`) | Error |
+| **G14** | `QUARANTINED_PATH_REQUIRED` | Restricts conflict resolution targets strictly within `<collection>/conflicts/`, preventing accidental overwrites or unlinks outside the quarantine directory | Error |
+| **Guard** | `DUPLICATE_SLUG_GUARD` | Scans local drafts, published posts, cache index, and remote collection during `emit new` / `sync_new` to strictly block creating scaffold articles with already-existing slugs | Error |
 
 ---
 
@@ -607,13 +632,13 @@ emit pull [id] [options]
 ```
 
 * `[id]`: Optional article ID or ULID. If specified, pulls only that specific article (even if outside the window). Taxonomies are not pulled in single-article mode.
-* `-s, --status <draft|published|all>`: Filter by publication status (default: `all`).
+* `-s, --status <draft|published|all>`: Filter by publication status (default: `all`). When set to `all`, the sliding window (`postsSyncLimit`, default `100`) is applied **per status** (fetching up to `postsSyncLimit` `published` + up to `postsSyncLimit` `draft` articles in parallel).
 * `-c, --collection <collection>`: Collection name (default: `posts`).
 * `--no-prune`: Do not prune local articles that have fallen outside the sliding window (escape hatch; not intended for routine use).
 * `--force`: Force overwrite local files and bypass differential hash checking.
 * `--concurrency <n>`: Parallel processing task limit (default: `8`).
 * `--posts-only`: Skip automatic remote taxonomy sync. Pulls articles only (local taxonomy candidates hint is still displayed from cached definitions).
-* `--media`: Also pull media assets and companion metadata into `media/`.
+* `--media`: Also pull media assets and companion metadata into `media/` (bounded by `mediaSyncLimit`, default `300`). Use `emit pull-media` for `--limit`, `--all`, and `--prune` control.
 * `--metadata-only`: With `--media`: download only metadata YAML, skip binary file downloads.
 
 > [!NOTE]
@@ -621,7 +646,10 @@ emit pull [id] [options]
 
 > [!NOTE]
 > **Why `--no-prune` is rarely needed:**  
-> Automatic pruning is mathematically loss-free: Emit's unpushed edits safeguard strictly aborts the pull if an older article contains local modifications. You only need `--no-prune` in exceptional circumstances, such as temporarily suppressing Git working-tree changes during a quick pull.
+> Automatic pruning is mathematically loss-free: Emit's unpushed edits safeguard inspects both the canonical file and any duplicate filenames sharing the same 26-character ULID, strictly aborting the pull (`SyncPruneConflictError`) if any of them contain local modifications. Clean duplicate files are removed alongside the canonical file. You only need `--no-prune` in exceptional circumstances, such as temporarily suppressing Git working-tree changes during a quick pull.
+
+> [!NOTE]
+> **Unpushed writing is never discarded.** When a pull finds local content that diverges from the last synced baseline, Emit first moves that file to `posts/conflicts/<name>.conflict.md` (a read-only rescue copy) and then writes the canonical article. Rescue copies are never pushed or pruned automatically, and pushing one directly is refused with `QUARANTINED_COPY_NOT_PUSHABLE` (Guard **G12**): read the copy, merge any valuable content into the canonical article, then delete it. If an invalid file also carries local edits, `--force` is the escape hatch (it quarantines the divergent copy, then writes the repaired file).
 
 **Example:**
 
@@ -656,11 +684,11 @@ Available Categories:
 Available Tags:
   - ai, cloudflare, emit, typescript
 
-Fetching articles from remote (posts, status: all, window: 100, concurrency: 8)...
-  [1/100] ✅ Pulled hello-world -> posts/published/20261101_01M5...-Hello-World.md
-  [2/100] ✅ Pulled draft-post -> posts/draft/20261104_01M6...-Draft-Post.md
+Fetching articles from remote (posts, status: all, window: 100/status, concurrency: 8)...
+  [1/169] ✅ Pulled hello-world -> posts/published/20261101_01M5...-Hello-World.md
+  [2/169] ✅ Pulled draft-post -> posts/draft/20261104_01M6...-Draft-Post.md
 
-🎉 Articles: 100 total (12 updated, 88 skipped/up-to-date)
+🎉 Articles: 169 total [100 published, 69 draft] (12 updated, 157 skipped/up-to-date)
 
 ```
 
@@ -693,6 +721,66 @@ emit push posts/draft/20261104_01M6...-my-article.md --allow-publish
 
 ---
 
+### `emit delete`
+
+Safely deletes a local Markdown article and its remote counterpart on EmDash.
+
+```bash
+emit delete <filePathOrId> [--allow-delete-published] [--dry-run] [-y, --yes] [-p, --profile <name>]
+```
+
+* `<filePathOrId>`: Relative/absolute path to the Markdown file, or 26-character article ULID.
+* `--allow-delete-published`: Required when deleting a published article (safety guardrail).
+* `--dry-run`: Previews the deletion, inspecting referenced media and lines without modifying disk or remote.
+* `-y, --yes`: Skips interactive confirmation prompt.
+* `-p, --profile <name>`: Explicitly target a specific connection profile.
+
+> [!NOTE]
+> **Rescue Backups on Deletion**: When an article is deleted, Emit automatically creates a safety rescue backup at `posts/conflicts/<name>.deleted.md` before removing the file, preserving your work in case of accidental deletion.
+
+---
+
+### `emit conflicts`
+
+Inspects, diffs, and resolves quarantined sync conflict copies (`.conflict.md`) and deletion rescue backups (`.deleted.md`) residing in `posts/conflicts/`.
+
+```bash
+# List all quarantined copies with status labels and canonical file paths
+emit conflicts list [-c, --collection <collection>]
+
+# View line-by-line diff between quarantined copy and canonical article
+emit conflicts diff <filePath> [-c, --collection <collection>]
+
+# Resolve conflict with a specific strategy
+emit conflicts resolve <filePath> --accept-local [-f, --force] [-c, --collection <collection>]
+emit conflicts resolve <filePath> --accept-canonical [-c, --collection <collection>]
+```
+
+* `list`: Scans `<collection>/conflicts/`, classifying items as `⚠️ SYNC CONFLICT` or `🗑️ DELETED RESCUE`, showing sizes and dates.
+* `diff`: Displays a unified diff against the current canonical article.
+* `resolve --accept-local`: Restores the quarantined content to the canonical location and purges the quarantine file. Guard **G13** blocks overwriting canonical articles that contain unpushed local modifications unless `-f, --force` is explicitly provided.
+* `resolve --accept-canonical`: Safely discards the quarantined copy, retaining the canonical version.
+
+---
+
+### `emit doctor`
+
+Runs an automated diagnostic health check across the local workspace and cache database.
+
+```bash
+emit doctor [-c, --collection <collection>] [-p, --profile <name>]
+```
+
+Validates 6 critical health vectors:
+1. **Version Compatibility**: Checks tool version against `createdWithVersion` / `lastSyncedVersion` in config.
+2. **Origin Consistency**: Verifies `.emit/config.json`, profile origin, and environment variables.
+3. **Frontmatter Integrity**: Ensures all local Markdown files have valid parseable frontmatter.
+4. **Conflicts & Quarantine**: Flags unresolved conflict copies and deletion backups in `conflicts/`.
+5. **Sync Status**: Verifies local baseline hash tracking.
+6. **Referenced Media Existence**: Validates that all local media referenced in article Markdown bodies exist on disk.
+
+---
+
 ### `emit status`
 
 Displays the local workspace synchronization status compared against the baseline cache.
@@ -709,13 +797,17 @@ emit status [-c, --collection <collection>] [-p, --profile <name>]
   🟡 [modified] draft     posts/draft/20261104_01M6BBB...-AI-Workflow-Guide.md (AI Workflow Guide)
   ⚪ [untracked] draft     posts/draft/20261104_01M6AAA...-Draft-Notes.md (Draft Notes)
   🟢 [synced  ] published posts/published/20261015_01M5ZZZ...-Getting-Started.md (Getting Started)
+  🔴 [invalid ] published posts/published/20190405_01M6CCC...-Broken-Post.md (Broken-Post) [uncached] — bad indentation of a mapping entry at line 5
 
-Summary: 3 total (1 synced, 1 modified, 1 untracked)
+Summary: 4 total (1 synced, 1 modified, 1 untracked, 1 invalid)
 ```
 
 > [!NOTE]
 > Articles are sorted newest-first by date prefix and ULID. The date prefix reflects the article's publication or creation date, not the last-modified time. To locate currently active edits, look for files marked `[modified]`.
 
+> [!NOTE]
+> `[invalid]` marks a file whose YAML frontmatter could not be parsed (usually an older serializer wrote unquoted percent-encoded taxonomy slugs). Batch `emit pull` self-heals cached invalid files; files outside the sliding window are marked `[uncached]` and are repaired with `emit pull <ULID>` (MCP: `sync_pull` with `id: "<ULID>"`). When `<collection>/conflicts/` holds rescue copies, the count is reported separately (`conflicts`) and never counted as an article.
+
 ---
 
 ### `emit diff`
@@ -735,7 +827,7 @@ emit diff [filePath] [-i, --id <id>] [-p, --profile <name>]
 
 ### `emit pull-taxonomies`
 
-Downloads categories and tags from EmDash and generates local YAML definitions under `categories/` and `tags/`. This is also performed automatically by `emit pull` in batch mode.
+Downloads categories and tags from EmDash and generates local YAML definitions under `categories/` and `tags/`. This is also performed automatically by `emit pull` in batch mode. If one taxonomy endpoint fails, existing local definitions for that taxonomy are preserved with a warning; if both endpoints fail, the command exits with code `1`.
 
 ```bash
 emit pull-taxonomies
@@ -761,13 +853,13 @@ Available Tags:
 
 ### `emit pull-media`
 
-Downloads media assets and their companion metadata YAML files into `media/`.
+Downloads media assets and their companion metadata YAML files into `media/`. Supports pulling all media, a limited batch, or targeted media referenced by a specific article.
 
 ```bash
-emit pull-media [-l, --limit <n>] [--all] [--prune] [--metadata-only]
-
+emit pull-media [-a, --article <id-or-path>] [-l, --limit <n>] [--all] [--prune] [--metadata-only]
 ```
 
+* `-a, --article <id-or-path>`: Pulls only media assets referenced by the specified article (featured image and body images), saving bandwidth and disk space.
 * `-l, --limit <n>`: Maximum number of media items to fetch (default: `300`).
 * `--all`: Fetch all media items without limit.
 * `--prune`: Remove local media files that no longer exist on remote.
@@ -851,16 +943,22 @@ Emit features a first-class **Model Context Protocol (MCP)** server over stdio.
 
 | Tool | Purpose | Key Parameters |
 | --- | --- | --- |
-| `sync_status` | Inspect local sync state (articles returned newest-first) | `collection`, `profile` |
-| `sync_pull` | Pull remote articles **and taxonomies** into local workspace (includes taxonomy hints) | `collection`, `id`, `filePath`, `status`, `force`, `noPrune`, `prune`, `postsOnly`, `includeMedia`, `metadataOnly`, `profile` |
-| `sync_new` | Scaffold new article with canonical ULID, frontmatter, default byline, and taxonomy hints | `slug` (required), `title`, `collection`, `locale`, `byline`, `profile` |
-| `sync_push` | Push local article changes to remote with preflight checks and `media/drafts/*` auto-upload | `filePath` (required), `allowPublish`, `profile` |
+| `sync_status` | Inspect local sync state (summary-first structure with capped actionRequired, articles, and search filters) | `collection`, `status`, `search`, `profile` |
+| `sync_pull` | Pull remote articles **and taxonomies** into local workspace (includes taxonomy hints; preserves divergent local copies under `posts/conflicts/`) | `collection`, `id`, `filePath`, `status`, `force`, `noPrune`, `prune`, `postsOnly`, `includeMedia`, `metadataOnly`, `profile` |
+| `sync_new` | Scaffold new article with canonical ULID, frontmatter, default byline, duplicate slug guard, and taxonomy hints | `slug` (required), `title`, `collection`, `locale`, `byline`, `profile` |
+| `sync_push` | Push local article changes to remote with preflight checks and `media/drafts/*` auto-upload; refuses `posts/conflicts/` rescue copies (G12) | `filePath` (required), `allowPublish`, `profile` |
+| `sync_delete` | Safely delete article locally and remotely with rescue backup (`.deleted.md`) and unpushed edit protection | `filePath`, `id`, `allowDeletePublished`, `dryRun`, `profile` |
+| `sync_conflicts` | List, diff, and resolve quarantined conflict copies and deletion backups in `posts/conflicts/` (G13 unpushed edit guard with `force`) | `action` ("list"\|"diff"\|"resolve"), `filePath`, `strategy` ("accept-local"\|"accept-canonical"), `force`, `profile` |
+| `sync_doctor` | Run comprehensive workspace diagnostics (version, origin, frontmatter, conflicts, sync, referenced media) | `collection`, `profile` |
 | `sync_diff` | Inspect diff between working file and baseline snapshot | `filePath`, `id`, `profile` |
 | `sync_pull_taxonomies` | Pull remote category and tag definitions (standalone; returns taxonomy hints) | `profile` |
-| `sync_pull_media` | Pull remote media files and metadata into `media/` | `limit`, `all`, `downloadFiles`, `profile` |
+| `sync_pull_media` | Pull remote media files and metadata into `media/` (supports batch or targeted article media) | `article`, `limit`, `all`, `downloadFiles`, `profile` |
 | `profile_list` | List all configured connection profiles | (none) |
 | `profile_switch` | Switch active profile for multi-site environments | `name` (required), `persist` |
 
+> [!NOTE]
+> **Uniform `_meta` Context & Structured Diagnostics**: Every MCP tool response (success and error) includes structured `_meta` context containing `profile`, `workspace`, `origin`, and `resolvedBy` resolution rationale. Handlers return structured error payloads with actionable suggestions, HTTP status, and preflight codes rather than uncaught raw exceptions.
+
 ### Autonomous Agent Workflows
 
 With Emit connected via MCP, you can give high-level natural language instructions to your AI:
@@ -924,6 +1022,12 @@ Push your changes with 'emit push <file>' or discard them before pulling.
 
 **Solution**: Run `emit pull` or `sync_pull` (taxonomies are synced automatically), or use `emit pull-taxonomies` standalone to refresh your local category and tag list. Preflight Guard G4 will guide you with valid options.
 
+### Q: `[NETWORK_ERROR]`: Network request failed (`fetch failed`)
+
+**Cause**: The configured origin URL is unreachable due to DNS resolution failure, offline network/VPN state, or an incorrect origin in `~/.config/emit/profiles.yaml` or `.emit/config.json`.
+
+**Solution**: Verify the `origin` URL reported in `Endpoint:` and check `emit profile list` / `.emit/config.json`. If `.emit/config.json` and your active profile point to different origins, Emit prints an origin mismatch warning to help you reconcile them.
+
 ---
 
 ## 🧪 Testing & Quality Assurance

package/dist/bin/emit.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"emit.d.ts","sourceRoot":"","sources":["../../src/bin/emit.ts"],"names":[],"mappings":";AAwBA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAUpC,eAAO,MAAM,OAAO,SAAgB,CAAC;AAyBrC,wBAAgB,MAAM,CAAC,IAAI,WAAe,GAAG,IAAI,CAEhD"}
+{"version":3,"file":"emit.d.ts","sourceRoot":"","sources":["../../src/bin/emit.ts"],"names":[],"mappings":";AAwBA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAapC,eAAO,MAAM,OAAO,SAAgB,CAAC;AA4BrC,wBAAgB,MAAM,CAAC,IAAI,WAAe,GAAG,IAAI,CAEhD"}

package/dist/bin/emit.js

@@ -28,6 +28,9 @@ import { registerNewCommand } from '../cli/commands/new.js';
 import { registerPullCommands } from '../cli/commands/pull.js';
 import { registerPushCommand } from '../cli/commands/push.js';
 import { registerStatusInitCommands } from '../cli/commands/status.js';
+import { registerDeleteCommand } from '../cli/commands/delete.js';
+import { registerConflictsCommand } from '../cli/commands/conflicts.js';
+import { registerDoctorCommand } from '../cli/commands/doctor.js';
 import { getPackageVersion } from '../utils/version.js';
 export const program = new Command();
 program
@@ -41,6 +44,9 @@ registerNewCommand(program, resolveContext);
 registerPullCommands(program, resolveContext);
 registerPushCommand(program, resolveContext);
 registerStatusInitCommands(program, resolveContext);
+registerDeleteCommand(program, resolveContext);
+registerConflictsCommand(program, resolveContext);
+registerDoctorCommand(program, resolveContext);
 // emit mcp
 program
     .command('mcp')

package/dist/bin/emit.js.map

@@ -1 +1 @@
-{"version":3,"file":"emit.js","sourceRoot":"","sources":["../../src/bin/emit.ts"],"names":[],"mappings":";AAEA;;;;;;;;;;;;;;;;;;;;GAoBG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAChD,OAAO,EAAE,wBAAwB,EAAE,MAAM,mBAAmB,CAAC;AAC7D,OAAO,EAAE,uBAAuB,EAAE,MAAM,4BAA4B,CAAC;AACrE,OAAO,EAAE,kBAAkB,EAAE,MAAM,wBAAwB,CAAC;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,EAAE,mBAAmB,EAAE,MAAM,yBAAyB,CAAC;AAC9D,OAAO,EAAE,0BAA0B,EAAE,MAAM,2BAA2B,CAAC;AACvE,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AAExD,MAAM,CAAC,MAAM,OAAO,GAAG,IAAI,OAAO,EAAE,CAAC;AAErC,OAAO;KACJ,IAAI,CAAC,MAAM,CAAC;KACZ,WAAW,CAAC,2EAA2E,CAAC;KACxF,OAAO,CAAC,iBAAiB,EAAE,CAAC,CAAC;AAEhC,MAAM,cAAc,GAAG,wBAAwB,EAAE,CAAC;AAElD,4BAA4B;AAC5B,uBAAuB,CAAC,OAAO,CAAC,CAAC;AACjC,kBAAkB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAC5C,oBAAoB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAC9C,mBAAmB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAC7C,0BAA0B,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAEpD,WAAW;AACX,OAAO;KACJ,OAAO,CAAC,KAAK,CAAC;KACd,WAAW,CAAC,0EAA0E,CAAC;KACvF,MAAM,CAAC,wBAAwB,EAAE,6BAA6B,CAAC;KAC/D,MAAM,CAAC,KAAK,EAAE,OAA+B,EAAE,EAAE;IAChD,MAAM,YAAY,CAAC,EAAE,aAAa,EAAE,OAAO,CAAC,SAAS,EAAE,CAAC,CAAC;AAC3D,CAAC,CAAC,CAAC;AAEL,MAAM,UAAU,MAAM,CAAC,IAAI,GAAG,OAAO,CAAC,IAAI;IACxC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;AACtB,CAAC;AAED,4CAA4C;AAC5C,MAAM,iBAAiB,GACrB,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;IACf,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC;QAClC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC;QACnC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC;AAEtC,IAAI,iBAAiB,EAAE,CAAC;IACtB,MAAM,EAAE,CAAC;AACX,CAAC"}
+{"version":3,"file":"emit.js","sourceRoot":"","sources":["../../src/bin/emit.ts"],"names":[],"mappings":";AAEA;;;;;;;;;;;;;;;;;;;;GAoBG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAChD,OAAO,EAAE,wBAAwB,EAAE,MAAM,mBAAmB,CAAC;AAC7D,OAAO,EAAE,uBAAuB,EAAE,MAAM,4BAA4B,CAAC;AACrE,OAAO,EAAE,kBAAkB,EAAE,MAAM,wBAAwB,CAAC;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,EAAE,mBAAmB,EAAE,MAAM,yBAAyB,CAAC;AAC9D,OAAO,EAAE,0BAA0B,EAAE,MAAM,2BAA2B,CAAC;AACvE,OAAO,EAAE,qBAAqB,EAAE,MAAM,2BAA2B,CAAC;AAClE,OAAO,EAAE,wBAAwB,EAAE,MAAM,8BAA8B,CAAC;AACxE,OAAO,EAAE,qBAAqB,EAAE,MAAM,2BAA2B,CAAC;AAClE,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AAExD,MAAM,CAAC,MAAM,OAAO,GAAG,IAAI,OAAO,EAAE,CAAC;AAErC,OAAO;KACJ,IAAI,CAAC,MAAM,CAAC;KACZ,WAAW,CAAC,2EAA2E,CAAC;KACxF,OAAO,CAAC,iBAAiB,EAAE,CAAC,CAAC;AAEhC,MAAM,cAAc,GAAG,wBAAwB,EAAE,CAAC;AAElD,4BAA4B;AAC5B,uBAAuB,CAAC,OAAO,CAAC,CAAC;AACjC,kBAAkB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAC5C,oBAAoB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAC9C,mBAAmB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAC7C,0BAA0B,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AACpD,qBAAqB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAC/C,wBAAwB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAClD,qBAAqB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;AAE/C,WAAW;AACX,OAAO;KACJ,OAAO,CAAC,KAAK,CAAC;KACd,WAAW,CAAC,0EAA0E,CAAC;KACvF,MAAM,CAAC,wBAAwB,EAAE,6BAA6B,CAAC;KAC/D,MAAM,CAAC,KAAK,EAAE,OAA+B,EAAE,EAAE;IAChD,MAAM,YAAY,CAAC,EAAE,aAAa,EAAE,OAAO,CAAC,SAAS,EAAE,CAAC,CAAC;AAC3D,CAAC,CAAC,CAAC;AAEL,MAAM,UAAU,MAAM,CAAC,IAAI,GAAG,OAAO,CAAC,IAAI;IACxC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;AACtB,CAAC;AAED,4CAA4C;AAC5C,MAAM,iBAAiB,GACrB,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;IACf,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC;QAClC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC;QACnC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC;AAEtC,IAAI,iBAAiB,EAAE,CAAC;IACtB,MAAM,EAAE,CAAC;AACX,CAAC"}

package/dist/cli/commands/conflicts.d.ts

@@ -0,0 +1,4 @@
+import type { Command } from 'commander';
+import type { CliContextResolver } from '../context.js';
+export declare function registerConflictsCommand(program: Command, resolveContext: CliContextResolver): void;
+//# sourceMappingURL=conflicts.d.ts.map

package/dist/cli/commands/conflicts.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"conflicts.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/conflicts.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AASzC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAExD,wBAAgB,wBAAwB,CACtC,OAAO,EAAE,OAAO,EAChB,cAAc,EAAE,kBAAkB,GACjC,IAAI,CAqJN"}

package/dist/cli/commands/conflicts.js

@@ -0,0 +1,153 @@
+/*
+ * Copyright (C) 2026 SPORT-SERVICE RS★R
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in all
+ * copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ * SOFTWARE.
+ */
+import { ApiError } from '../../client/error.js';
+import { listConflicts, diffConflict, resolveConflict, CanonicalHasUnpushedEditsError, QuarantinedPathRequiredError, } from '../../sync/conflicts.js';
+export function registerConflictsCommand(program, resolveContext) {
+    const reportActionFailure = (error) => {
+        if (error instanceof CanonicalHasUnpushedEditsError) {
+            console.error(`❌ ${error.message}`);
+            console.error(`💡 Suggestion: ${error.suggestion}`);
+        }
+        else if (error instanceof QuarantinedPathRequiredError) {
+            console.error(`❌ Error: [QUARANTINED_PATH_REQUIRED] ${error.message}`);
+            console.error(`💡 Suggestion: ${error.suggestion}`);
+        }
+        else if (error instanceof ApiError) {
+            console.error(error.toActionableString());
+        }
+        else if (error instanceof Error) {
+            console.error(`❌ Error: ${error.message}`);
+        }
+        else {
+            console.error(`❌ Error: ${String(error)}`);
+        }
+        process.exit(1);
+    };
+    const conflicts = program
+        .command('conflicts')
+        .description('Manage quarantined sync conflict copies and deletion rescue backups in posts/conflicts/');
+    // emit conflicts list
+    conflicts
+        .command('list')
+        .description('List all quarantined conflict and deleted backup files')
+        .option('-c, --collection <collection>', 'Target collection (defaults to "posts")')
+        .option('-p, --profile <name>', 'Explicitly use a specific connection profile')
+        .action(async (options) => {
+        try {
+            const ctx = resolveContext(options.profile, { optionalAuth: true });
+            const collection = options.collection || ctx.config.defaultCollection || 'posts';
+            const items = listConflicts(ctx.root, collection);
+            if (items.length === 0) {
+                console.log(`✅ No conflicts or rescue backups found in ${collection}/conflicts/.`);
+                return;
+            }
+            console.log(`📁 Quarantined Files in ${collection}/conflicts/ (${items.length} total):\n`);
+            for (const item of items) {
+                const typeLabel = item.type === 'conflict'
+                    ? '⚠️  [SYNC CONFLICT]'
+                    : item.type === 'deleted'
+                        ? '🗑️  [DELETED RESCUE]'
+                        : '❓ [UNKNOWN]';
+                const titleStr = item.title ? ` - "${item.title}"` : '';
+                const canonicalStr = item.canonicalPath
+                    ? ` (canonical: ${item.canonicalPath})`
+                    : ' (canonical: absent)';
+                console.log(`  ${typeLabel} ${item.filePath}${titleStr}${canonicalStr}`);
+                console.log(`     ID: ${item.id || 'unknown'} | Slug: ${item.slug || 'unknown'} | Size: ${item.sizeBytes} B | Created: ${item.createdAt}\n`);
+            }
+            console.log('Commands:');
+            console.log('  emit conflicts diff <filePath>                 Inspect differences');
+            console.log('  emit conflicts resolve <filePath> --accept-local      Apply quarantined copy to canonical');
+            console.log('  emit conflicts resolve <filePath> --accept-canonical  Discard quarantined copy\n');
+        }
+        catch (err) {
+            reportActionFailure(err);
+        }
+    });
+    // emit conflicts diff <filePath>
+    conflicts
+        .command('diff <filePath>')
+        .description('Inspect differences between a quarantined copy and the canonical article')
+        .option('-c, --collection <collection>', 'Target collection (defaults to "posts")')
+        .option('-p, --profile <name>', 'Explicitly use a specific connection profile')
+        .action(async (filePath, options) => {
+        try {
+            const ctx = resolveContext(options.profile, { optionalAuth: true });
+            const collection = options.collection || ctx.config.defaultCollection || 'posts';
+            const result = diffConflict({
+                workspaceRoot: ctx.root,
+                filePath,
+                collection,
+            });
+            console.log(`🔍 Diff for ${result.conflictFilePath} (${result.type}):`);
+            if (result.canonicalFilePath) {
+                console.log(`   Canonical: ${result.canonicalFilePath}`);
+                console.log(`   Changes: +${result.additions} / -${result.deletions} lines\n`);
+            }
+            else {
+                console.log(`   Canonical: None (article was deleted or absent)\n`);
+            }
+            console.log(result.diffText);
+        }
+        catch (err) {
+            reportActionFailure(err);
+        }
+    });
+    // emit conflicts resolve <filePath>
+    conflicts
+        .command('resolve <filePath>')
+        .description('Resolve a quarantined conflict by accepting the local/quarantined copy or the canonical version')
+        .option('--accept-local', 'Replace canonical article with quarantined copy and delete quarantine')
+        .option('--accept-canonical', 'Discard the quarantined copy and keep canonical article')
+        .option('-f, --force', 'Force overwrite canonical article even if it has unpushed local modifications')
+        .option('-c, --collection <collection>', 'Target collection (defaults to "posts")')
+        .option('-p, --profile <name>', 'Explicitly use a specific connection profile')
+        .action(async (filePath, options) => {
+        try {
+            if (!options.acceptLocal && !options.acceptCanonical) {
+                console.error('❌ Error: Must specify either --accept-local or --accept-canonical');
+                process.exit(1);
+            }
+            const strategy = options.acceptLocal ? 'accept-local' : 'accept-canonical';
+            const ctx = resolveContext(options.profile, { optionalAuth: true });
+            const collection = options.collection || ctx.config.defaultCollection || 'posts';
+            const result = resolveConflict({
+                workspaceRoot: ctx.root,
+                cache: ctx.cache,
+                filePath,
+                strategy,
+                force: options.force,
+                collection,
+            });
+            console.log(`✅ ${result.message}`);
+            if (result.warnings && result.warnings.length > 0) {
+                for (const w of result.warnings) {
+                    console.log(`⚠️ Warning: ${w}`);
+                }
+            }
+        }
+        catch (err) {
+            reportActionFailure(err);
+        }
+    });
+}
+//# sourceMappingURL=conflicts.js.map

package/dist/cli/commands/conflicts.js.map

@@ -0,0 +1 @@
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package/dist/cli/commands/delete.d.ts

@@ -0,0 +1,4 @@
+import type { Command } from 'commander';
+import type { CliContextResolver } from '../context.js';
+export declare function registerDeleteCommand(program: Command, resolveContext: CliContextResolver): void;
+//# sourceMappingURL=delete.d.ts.map

package/dist/cli/commands/delete.d.ts.map

@@ -0,0 +1 @@
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