edfcore 0.6.9 → 0.6.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cli-run.js +1 -1
- package/dist/constants.d.ts +1 -1
- package/dist/constants.d.ts.map +1 -1
- package/dist/constants.js +1 -1
- package/dist/constants.js.map +1 -1
- package/dist/format-header.d.ts.map +1 -1
- package/dist/format-header.js +11 -1
- package/dist/format-header.js.map +1 -1
- package/docs/CHANGELOG.md +37 -0
- package/package.json +1 -1
- package/src/cli-run.ts +1 -1
- package/src/constants.ts +1 -1
- package/src/format-header.ts +12 -1
package/dist/cli-run.js
CHANGED
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@@ -57,7 +57,7 @@ const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
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Options
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--help, -h print this and exit 0
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60
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-
--patient include
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60
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+
--patient include both identification fields (header, validate, json)
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--list list events one per line instead of counting (events)
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--limit <n> diagnostics or events to print, default ${DEFAULT_ITEM_LIMIT}
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(header, validate, events --list)
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package/dist/constants.d.ts
CHANGED
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@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
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readonly reserved: 224;
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};
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/** Published package version. Kept in sync with package.json by a test. */
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-
export declare const VERSION = "0.6.
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112
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+
export declare const VERSION = "0.6.11";
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//# sourceMappingURL=constants.d.ts.map
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package/dist/constants.d.ts.map
CHANGED
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@@ -1 +1 @@
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1
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-
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1
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+
{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,+EAA+E;AAC/E,eAAO,MAAM,sBAAsB,EAAG,GAAY,CAAC;AAEnD,gFAAgF;AAChF,eAAO,MAAM,uBAAuB,EAAG,GAAY,CAAC;AAEpD,gGAAgG;AAChG,eAAO,MAAM,qBAAqB,EAAG,iBAA0B,CAAC;AAChE,eAAO,MAAM,qBAAqB,EAAG,iBAA0B,CAAC;AAEhE,uFAAuF;AACvF,eAAO,MAAM,gCAAgC,EAAG,KAAc,CAAC;AAE/D;;;GAGG;AACH,eAAO,MAAM,gBAAgB,YAAY,CAAC;AAE1C,+BAA+B;AAC/B,eAAO,MAAM,eAAe,EAAG,CAAC,KAAc,CAAC;AAC/C,eAAO,MAAM,eAAe,EAAG,KAAc,CAAC;AAE9C,0DAA0D;AAC1D,eAAO,MAAM,eAAe,EAAG,CAAC,OAAgB,CAAC;AACjD,eAAO,MAAM,eAAe,EAAG,OAAgB,CAAC;AAEhD,mEAAmE;AACnE,eAAO,MAAM,oBAAoB,EAAG,IAAa,CAAC;AAElD,0FAA0F;AAC1F,eAAO,MAAM,6BAA6B,EAAE,MAA0B,CAAC;AAEvE;6FAC6F;AAC7F,eAAO,MAAM,4BAA4B,EAAG,EAAa,CAAC;AAC1D,eAAO,MAAM,oBAAoB,EAAG,EAAa,CAAC;AAClD,eAAO,MAAM,cAAc,EAAG,CAAa,CAAC;AAE5C,yEAAyE;AACzE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAWhB,CAAC;AAEX;;;;;;GAMG;AACH,eAAO,MAAM,mBAAmB;;;;;;;;;;;CAWtB,CAAC;AAEX,+FAA+F;AAC/F,eAAO,MAAM,0BAA0B;;;;;;;;;;;CAW7B,CAAC;AAEX,2EAA2E;AAC3E,eAAO,MAAM,OAAO,WAAW,CAAC"}
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package/dist/constants.js
CHANGED
package/dist/constants.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"constants.js","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,+EAA+E;AAC/E,MAAM,CAAC,MAAM,sBAAsB,GAAG,GAAY,CAAC;AAEnD,gFAAgF;AAChF,MAAM,CAAC,MAAM,uBAAuB,GAAG,GAAY,CAAC;AAEpD,gGAAgG;AAChG,MAAM,CAAC,MAAM,qBAAqB,GAAG,iBAA0B,CAAC;AAChE,MAAM,CAAC,MAAM,qBAAqB,GAAG,iBAA0B,CAAC;AAEhE,uFAAuF;AACvF,MAAM,CAAC,MAAM,gCAAgC,GAAG,KAAc,CAAC;AAE/D;;;GAGG;AACH,MAAM,CAAC,MAAM,gBAAgB,GAAG,SAAS,CAAC;AAE1C,+BAA+B;AAC/B,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,KAAc,CAAC;AAC/C,MAAM,CAAC,MAAM,eAAe,GAAG,KAAc,CAAC;AAE9C,0DAA0D;AAC1D,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,OAAgB,CAAC;AACjD,MAAM,CAAC,MAAM,eAAe,GAAG,OAAgB,CAAC;AAEhD,mEAAmE;AACnE,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAa,CAAC;AAElD,0FAA0F;AAC1F,MAAM,CAAC,MAAM,6BAA6B,GAAW,GAAG,GAAG,IAAI,GAAG,IAAI,CAAC;AAEvE;6FAC6F;AAC7F,MAAM,CAAC,MAAM,4BAA4B,GAAG,IAAa,CAAC;AAC1D,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAa,CAAC;AAClD,MAAM,CAAC,MAAM,cAAc,GAAG,IAAa,CAAC;AAE5C,yEAAyE;AACzE,MAAM,CAAC,MAAM,aAAa,GAAG;IAC3B,OAAO,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE;IACjC,SAAS,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE;IACpC,WAAW,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE;IACvC,SAAS,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IACrC,SAAS,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IACrC,gBAAgB,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IAC5C,QAAQ,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,EAAE,EAAE;IACrC,WAAW,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IACvC,cAAc,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IAC1C,WAAW,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;CAC/B,CAAC;AAEX;;;;;;GAMG;AACH,MAAM,CAAC,MAAM,mBAAmB,GAAG;IACjC,KAAK,EAAE,EAAE;IACT,cAAc,EAAE,EAAE;IAClB,iBAAiB,EAAE,CAAC;IACpB,eAAe,EAAE,CAAC;IAClB,eAAe,EAAE,CAAC;IAClB,cAAc,EAAE,CAAC;IACjB,cAAc,EAAE,CAAC;IACjB,YAAY,EAAE,EAAE;IAChB,gBAAgB,EAAE,CAAC;IACnB,QAAQ,EAAE,EAAE;CACJ,CAAC;AAEX,+FAA+F;AAC/F,MAAM,CAAC,MAAM,0BAA0B,GAAG;IACxC,KAAK,EAAE,CAAC;IACR,cAAc,EAAE,EAAE;IAClB,iBAAiB,EAAE,EAAE;IACrB,eAAe,EAAE,GAAG;IACpB,eAAe,EAAE,GAAG;IACpB,cAAc,EAAE,GAAG;IACnB,cAAc,EAAE,GAAG;IACnB,YAAY,EAAE,GAAG;IACjB,gBAAgB,EAAE,GAAG;IACrB,QAAQ,EAAE,GAAG;CACL,CAAC;AAEX,2EAA2E;AAC3E,MAAM,CAAC,MAAM,OAAO,GAAG,
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1
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{"version":3,"file":"constants.js","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,+EAA+E;AAC/E,MAAM,CAAC,MAAM,sBAAsB,GAAG,GAAY,CAAC;AAEnD,gFAAgF;AAChF,MAAM,CAAC,MAAM,uBAAuB,GAAG,GAAY,CAAC;AAEpD,gGAAgG;AAChG,MAAM,CAAC,MAAM,qBAAqB,GAAG,iBAA0B,CAAC;AAChE,MAAM,CAAC,MAAM,qBAAqB,GAAG,iBAA0B,CAAC;AAEhE,uFAAuF;AACvF,MAAM,CAAC,MAAM,gCAAgC,GAAG,KAAc,CAAC;AAE/D;;;GAGG;AACH,MAAM,CAAC,MAAM,gBAAgB,GAAG,SAAS,CAAC;AAE1C,+BAA+B;AAC/B,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,KAAc,CAAC;AAC/C,MAAM,CAAC,MAAM,eAAe,GAAG,KAAc,CAAC;AAE9C,0DAA0D;AAC1D,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,OAAgB,CAAC;AACjD,MAAM,CAAC,MAAM,eAAe,GAAG,OAAgB,CAAC;AAEhD,mEAAmE;AACnE,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAa,CAAC;AAElD,0FAA0F;AAC1F,MAAM,CAAC,MAAM,6BAA6B,GAAW,GAAG,GAAG,IAAI,GAAG,IAAI,CAAC;AAEvE;6FAC6F;AAC7F,MAAM,CAAC,MAAM,4BAA4B,GAAG,IAAa,CAAC;AAC1D,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAa,CAAC;AAClD,MAAM,CAAC,MAAM,cAAc,GAAG,IAAa,CAAC;AAE5C,yEAAyE;AACzE,MAAM,CAAC,MAAM,aAAa,GAAG;IAC3B,OAAO,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE;IACjC,SAAS,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE;IACpC,WAAW,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE;IACvC,SAAS,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IACrC,SAAS,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IACrC,gBAAgB,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IAC5C,QAAQ,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,EAAE,EAAE;IACrC,WAAW,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IACvC,cAAc,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;IAC1C,WAAW,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE;CAC/B,CAAC;AAEX;;;;;;GAMG;AACH,MAAM,CAAC,MAAM,mBAAmB,GAAG;IACjC,KAAK,EAAE,EAAE;IACT,cAAc,EAAE,EAAE;IAClB,iBAAiB,EAAE,CAAC;IACpB,eAAe,EAAE,CAAC;IAClB,eAAe,EAAE,CAAC;IAClB,cAAc,EAAE,CAAC;IACjB,cAAc,EAAE,CAAC;IACjB,YAAY,EAAE,EAAE;IAChB,gBAAgB,EAAE,CAAC;IACnB,QAAQ,EAAE,EAAE;CACJ,CAAC;AAEX,+FAA+F;AAC/F,MAAM,CAAC,MAAM,0BAA0B,GAAG;IACxC,KAAK,EAAE,CAAC;IACR,cAAc,EAAE,EAAE;IAClB,iBAAiB,EAAE,EAAE;IACrB,eAAe,EAAE,GAAG;IACpB,eAAe,EAAE,GAAG;IACpB,cAAc,EAAE,GAAG;IACnB,cAAc,EAAE,GAAG;IACnB,YAAY,EAAE,GAAG;IACjB,gBAAgB,EAAE,GAAG;IACrB,QAAQ,EAAE,GAAG;CACL,CAAC;AAEX,2EAA2E;AAC3E,MAAM,CAAC,MAAM,OAAO,GAAG,QAAQ,CAAC"}
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@@ -1 +1 @@
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{"version":3,"file":"format-header.d.ts","sourceRoot":"","sources":["../src/format-header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAQH,OAAO,KAAK,EAAmB,SAAS,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;
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{"version":3,"file":"format-header.d.ts","sourceRoot":"","sources":["../src/format-header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAQH,OAAO,KAAK,EAAmB,SAAS,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AA6ClF;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,CAAC,EAAE,mBAAmB,GAAG,MAAM,CA+HrF"}
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package/dist/format-header.js
CHANGED
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@@ -48,6 +48,11 @@ function formatDurationTicks(ticks) {
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const pad = (n) => String(n).padStart(2, '0');
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return `${pad(hours)}:${pad(minutes)}:${pad(rest)}`;
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}
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/** `' uV'`, or nothing at all for the blank field a plain EDF file is entitled to write. */
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function dimensionSuffix(signal) {
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const dimension = printable(signal.physicalDimension);
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return dimension === '' ? '' : ` ${dimension}`;
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}
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function formatRate(signal) {
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// undefined is the honest answer for a zero record duration, which is legal EDF.
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return signal.sampleRateHz === undefined ? '—' : `${signal.sampleRateHz} Hz`;
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@@ -143,7 +148,12 @@ export function formatHeader(header, options) {
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// this is the LAST thing on the line — so a newline in it puts everything after it at
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// column 0, where it reads as another signal. `edfcore signals` already sanitised this
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// field; `edfcore header` did not (fixed in 0.3.47).
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-
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//
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// The separator belongs to the dimension, not to the range. A blank physical dimension
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// is ordinary — two of the seven files in the corpus have one, and EDF requires nothing
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// of the field — and printing the space anyway left the row ending in whitespace, on
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// the last thing on the line, where nothing shows it (fixed in 0.6.10).
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`${signal.physicalMinimum}..${signal.physicalMaximum}` + dimensionSuffix(signal);
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lines.push(`${index} ${label}${kind}${rate} ${range}`);
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}
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if (header.diagnostics.length > 0) {
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@@ -1 +1 @@
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1
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-
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|
|
1
|
+
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|
package/docs/CHANGELOG.md
CHANGED
|
@@ -6,6 +6,43 @@ alone does not tell you whether you were affected.
|
|
|
6
6
|
edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
|
|
7
7
|
defect; those are called out below.
|
|
8
8
|
|
|
9
|
+
## 0.6.11
|
|
10
|
+
|
|
11
|
+
- **Fixed** `--help` still describing `--patient` as "include patient identification" after 0.6.7
|
|
12
|
+
made it gate both identification fields. The page was updated then and the help text was not —
|
|
13
|
+
and the help text is the documentation that ships inside the package and is read by people who
|
|
14
|
+
never open a website.
|
|
15
|
+
- The drift was possible because the commands are checked three ways and the flags were checked
|
|
16
|
+
one and a half. `api-surface.test.ts` counts the `--help` command list against the README's
|
|
17
|
+
table, `cli-command-list.test.ts` asserts `--help` offers exactly what the dispatch switch
|
|
18
|
+
handles, and `documented-cli.test.ts` runs every `npx edfcore …` written across the docs.
|
|
19
|
+
`cli-flag-matrix.test.ts` reads the page's flag paragraph and checks the behaviour against it.
|
|
20
|
+
Nothing compared the page with the help text.
|
|
21
|
+
- `help-and-the-page-agree.test.ts` compares the two on the two things a reader acts on: which
|
|
22
|
+
flags exist, and which commands each one names. Wording is deliberately not compared — the page
|
|
23
|
+
has paragraphs and `--help` has a column, and making them match word for word would make one of
|
|
24
|
+
them worse — so the specific drift is kept as its own case beside the set check, which would have
|
|
25
|
+
passed on the old wording because what changed was what the flag does rather than where it
|
|
26
|
+
applies.
|
|
27
|
+
|
|
28
|
+
## 0.6.10
|
|
29
|
+
|
|
30
|
+
- **Fixed** the signal table in `edfcore header` ending a row in whitespace whenever a signal's
|
|
31
|
+
physical dimension was blank. The separator was printed with the range rather than with the
|
|
32
|
+
dimension, so a signal with no dimension got the space and nothing after it.
|
|
33
|
+
- Not a corner case: EDF requires nothing of that field, and two of the seven files in the
|
|
34
|
+
real-world corpus leave it empty on some signal, the PhysioNet polysomnogram among them. Its
|
|
35
|
+
`edfcore header` output had two such rows.
|
|
36
|
+
- A trailing space is invisible where it is produced and visible everywhere it is pasted — a diff
|
|
37
|
+
paints it, a code fence keeps it, and a linter on someone else's repository rejects the file it
|
|
38
|
+
landed in. It is also the failure no amount of reading the output finds.
|
|
39
|
+
- `no-line-ends-in-space.test.ts` checks every formatter and the four prose commands over every
|
|
40
|
+
shape in the matrix, plus a file with a blank dimension. The two tab-separated outputs are exempt
|
|
41
|
+
and get the stronger rule instead: a row of `events --list` ends in a tab whenever the event
|
|
42
|
+
names no channel, and that tab is the fourth column present and empty, which is what keeps
|
|
43
|
+
`cut -f4` reading a channel rather than the end of the line. Those two are checked for a constant
|
|
44
|
+
column count per row, which is what `cli.md` actually promises about them.
|
|
45
|
+
|
|
9
46
|
## 0.6.9
|
|
10
47
|
|
|
11
48
|
- **Added** `corpus.yml`, so the corpus suite is run by something other than a developer
|
package/package.json
CHANGED
package/src/cli-run.ts
CHANGED
|
@@ -69,7 +69,7 @@ const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
|
|
|
69
69
|
|
|
70
70
|
Options
|
|
71
71
|
--help, -h print this and exit 0
|
|
72
|
-
--patient include
|
|
72
|
+
--patient include both identification fields (header, validate, json)
|
|
73
73
|
--list list events one per line instead of counting (events)
|
|
74
74
|
--limit <n> diagnostics or events to print, default ${DEFAULT_ITEM_LIMIT}
|
|
75
75
|
(header, validate, events --list)
|
package/src/constants.ts
CHANGED
package/src/format-header.ts
CHANGED
|
@@ -52,6 +52,12 @@ function formatDurationTicks(ticks: bigint): string {
|
|
|
52
52
|
return `${pad(hours)}:${pad(minutes)}:${pad(rest)}`;
|
|
53
53
|
}
|
|
54
54
|
|
|
55
|
+
/** `' uV'`, or nothing at all for the blank field a plain EDF file is entitled to write. */
|
|
56
|
+
function dimensionSuffix(signal: EdfHeader['signals'][number]): string {
|
|
57
|
+
const dimension = printable(signal.physicalDimension);
|
|
58
|
+
return dimension === '' ? '' : ` ${dimension}`;
|
|
59
|
+
}
|
|
60
|
+
|
|
55
61
|
function formatRate(signal: EdfHeader['signals'][number]): string {
|
|
56
62
|
// undefined is the honest answer for a zero record duration, which is legal EDF.
|
|
57
63
|
return signal.sampleRateHz === undefined ? '—' : `${signal.sampleRateHz} Hz`;
|
|
@@ -158,7 +164,12 @@ export function formatHeader(header: EdfHeader, options?: FormatHeaderOptions):
|
|
|
158
164
|
// this is the LAST thing on the line — so a newline in it puts everything after it at
|
|
159
165
|
// column 0, where it reads as another signal. `edfcore signals` already sanitised this
|
|
160
166
|
// field; `edfcore header` did not (fixed in 0.3.47).
|
|
161
|
-
|
|
167
|
+
//
|
|
168
|
+
// The separator belongs to the dimension, not to the range. A blank physical dimension
|
|
169
|
+
// is ordinary — two of the seven files in the corpus have one, and EDF requires nothing
|
|
170
|
+
// of the field — and printing the space anyway left the row ending in whitespace, on
|
|
171
|
+
// the last thing on the line, where nothing shows it (fixed in 0.6.10).
|
|
172
|
+
`${signal.physicalMinimum}..${signal.physicalMaximum}` + dimensionSuffix(signal);
|
|
162
173
|
lines.push(`${index} ${label}${kind}${rate} ${range}`);
|
|
163
174
|
}
|
|
164
175
|
|