edfcore 0.6.5 → 0.6.7

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Files changed (13) hide show
  1. package/dist/cli-run.d.ts.map +1 -1
  2. package/dist/cli-run.js +49 -5
  3. package/dist/cli-run.js.map +1 -1
  4. package/dist/constants.d.ts +1 -1
  5. package/dist/constants.js +1 -1
  6. package/dist/format-header.d.ts.map +1 -1
  7. package/dist/format-header.js +6 -6
  8. package/dist/format-header.js.map +1 -1
  9. package/docs/CHANGELOG.md +43 -0
  10. package/package.json +1 -1
  11. package/src/cli-run.ts +51 -5
  12. package/src/constants.ts +1 -1
  13. package/src/format-header.ts +6 -7
package/dist/cli-run.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"cli-run.d.ts","sourceRoot":"","sources":["../src/cli-run.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAeH;;;;;;;;;;;GAWG;AACH,qBAAa,aAAc,SAAQ,UAAU;IAC3C,QAAQ,CAAC,KAAK,EAAG,IAAI,CAAU;gBAEnB,OAAO,EAAE,MAAM;CAI5B;AAED,iDAAiD;AACjD,MAAM,WAAW,KAAK;IACpB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;IAC5C,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AA4CD;;;;GAIG;AACH,MAAM,WAAW,IAAI;IACnB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IAClC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;CACpC;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,CAkDvD;AAoCD;;;;GAIG;AACH,wBAAsB,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CAoQnE"}
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+ {"version":3,"file":"cli-run.d.ts","sourceRoot":"","sources":["../src/cli-run.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAgBH;;;;;;;;;;;GAWG;AACH,qBAAa,aAAc,SAAQ,UAAU;IAC3C,QAAQ,CAAC,KAAK,EAAG,IAAI,CAAU;gBAEnB,OAAO,EAAE,MAAM;CAI5B;AAED,iDAAiD;AACjD,MAAM,WAAW,KAAK;IACpB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;IAC5C,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AA4CD;;;;GAIG;AACH,MAAM,WAAW,IAAI;IACnB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IAClC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;CACpC;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,CAkDvD;AAoCD;;;;GAIG;AACH,wBAAsB,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CAiTnE"}
package/dist/cli-run.js CHANGED
@@ -12,6 +12,7 @@ import { VERSION } from './constants.js';
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  import { formatDiagnostics } from './diagnostics/format.js';
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  import { formatHeader } from './format-header.js';
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  import { formatValidationReport } from './format-report.js';
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+ import { formatCalendarDate, formatClockTime } from './header/dates.js';
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  import { byteSource } from './io/bytes.js';
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  import { buildRecordIndex } from './record-index.js';
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  import { openEdf, readAnnotations } from './recording.js';
@@ -369,11 +370,54 @@ export async function runCli(args, io) {
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  recordCount: header.recordCount,
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  recordDurationSeconds: header.recordDurationSeconds,
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  spanSeconds: recording.timeline.spanSeconds,
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- // Patient identification is opt-in here for the same reason it is in formatHeader:
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- // the obvious thing to do with this output is pipe it somewhere.
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- // `trimEdfField`, for the reason formatHeader uses it: `.trim()` leaves NUL padding
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- // in place, and JSON.stringify escapes it into a run of `\u0000` in the value.
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- ...(args.patient ? { patient: trimEdfField(header.patient.raw) } : {}),
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+ /*
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+ * The start, which this command was alone in not reporting. `header` prints it on its
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+ * second line and needs no flag for it, `signals` is per-signal and `gaps` is about
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+ * onsets, so the machine-readable output was the only one a script could not get the
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+ * recording's date and time out of.
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+ *
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+ * That is worse than an omission, because of where the package sends people:
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+ * DATE_CLIPPED_TO_1985_2084 fires on any file with a two-digit year and its Next:
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+ * clause says to read the four-digit year the EDF+ recording identification spells
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+ * out. `edfcore json` reported the diagnostic and not the field it points at.
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+ *
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+ * Both sources are named rather than resolved away. A date that came from the
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+ * recording identification is the unambiguous one; a clock with `clockSource: 'none'`
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+ * is a substituted midnight rather than a file that starts at midnight, and 0.3.17 is
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+ * what happens when those two are one value. `null`, not an omitted key: JSON drops
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+ * `undefined`, and a reader doing `.start.clock` should get the answer rather than
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+ * nothing.
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+ */
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+ start: {
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+ date: header.startTime.resolvedDate === undefined
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+ ? null
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+ : formatCalendarDate(header.startTime.resolvedDate),
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+ dateSource: header.startTime.dateSource,
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+ clock: header.startTime.clockSource === 'none'
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+ ? null
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+ : formatClockTime(header.startTime.clock),
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+ clockSource: header.startTime.clockSource,
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+ },
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+ /*
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+ * Identification is opt-in here for the same reason it is in `formatHeader`: the
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+ * obvious thing to do with this output is pipe it somewhere.
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+ *
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+ * BOTH fields, on the one flag. `redaction()` above states the rule — the two must be
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+ * gated together, by the same flag, in every command that prints either — and until
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+ * 0.6.7 this command printed one of them. `header --patient` shows a `recording` line
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+ * and `json --patient` did not, so the same flag meant two different things two
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+ * commands apart, and the field holding the technician code, the equipment code and
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+ * the only unambiguous startdate was unreachable from the machine-readable output.
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+ *
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+ * `trimEdfField`, for the reason formatHeader uses it: `.trim()` leaves NUL padding
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+ * in place, and JSON.stringify escapes it into a run of `\u0000` in the value.
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+ */
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+ ...(args.patient
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+ ? {
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+ patient: trimEdfField(header.patient.raw),
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+ recording: trimEdfField(header.recording.raw),
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+ }
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+ : {}),
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  signals: header.signals.map((signal) => ({
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  index: signal.index,
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  label: signal.label,
package/dist/cli-run.js.map CHANGED
@@ -1 +1 @@
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package/dist/constants.d.ts CHANGED
@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
109
109
  readonly reserved: 224;
110
110
  };
111
111
  /** Published package version. Kept in sync with package.json by a test. */
112
- export declare const VERSION = "0.6.5";
112
+ export declare const VERSION = "0.6.7";
113
113
  //# sourceMappingURL=constants.d.ts.map
package/dist/constants.js CHANGED
@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
79
79
  reserved: 224,
80
80
  };
81
81
  /** Published package version. Kept in sync with package.json by a test. */
82
- export const VERSION = '0.6.5';
82
+ export const VERSION = '0.6.7';
83
83
  //# sourceMappingURL=constants.js.map
package/dist/format-header.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"format-header.d.ts","sourceRoot":"","sources":["../src/format-header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAQH,OAAO,KAAK,EAAmB,SAAS,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAuClF;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,CAAC,EAAE,mBAAmB,GAAG,MAAM,CA2HrF"}
1
+ {"version":3,"file":"format-header.d.ts","sourceRoot":"","sources":["../src/format-header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAQH,OAAO,KAAK,EAAmB,SAAS,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAuClF;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,CAAC,EAAE,mBAAmB,GAAG,MAAM,CA0HrF"}
package/dist/format-header.js CHANGED
@@ -14,7 +14,7 @@
14
14
  import { trimEdfField } from './bytes/latin1.js';
15
15
  import { TICKS_PER_SECOND } from './constants.js';
16
16
  import { summarizeDiagnostics } from './diagnostics/summary.js';
17
- import { formatCalendarDate } from './header/dates.js';
17
+ import { formatCalendarDate, formatClockTime } from './header/dates.js';
18
18
  import { pluralise } from './text/counted.js';
19
19
  import { printable } from './text/printable.js';
20
20
  /**
@@ -73,11 +73,11 @@ export function formatHeader(header, options) {
73
73
  // half has always honoured it. The clock half printed `00:00:00` for a starttime field that
74
74
  // failed its grammar — byte-identical to a file that genuinely started at midnight, which for a
75
75
  // sleep study is the most believable start there is (fixed in 0.3.17).
76
- const clock = start.clockSource === 'none'
77
- ? 'unknown'
78
- : `${String(start.clock.hour).padStart(2, '0')}:` +
79
- `${String(start.clock.minute).padStart(2, '0')}:` +
80
- `${String(start.clock.second).padStart(2, '0')}`;
76
+ // `formatClockTime`, not a second renderer, for the reason `formatDate` above gives about the
77
+ // date half: the private copy of THAT one padded the year differently and printed `985-04-24`
78
+ // here against `0985-04-24` eight lines below. This copy agreed with the shared one on every
79
+ // input, which is the state the date copy was in until it did not (0.6.6).
80
+ const clock = start.clockSource === 'none' ? 'unknown' : formatClockTime(start.clock);
81
81
  lines.push(`start ${formatDate(start.resolvedDate)} ${clock} (local, no timezone)`);
82
82
  lines.push(`record ${header.recordDurationSeconds} s · ${header.recordByteLength} bytes · ` +
83
83
  `${header.bytesPerSample} bytes/sample`);
package/dist/format-header.js.map CHANGED
@@ -1 +1 @@
1
- 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1
+ 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package/docs/CHANGELOG.md CHANGED
@@ -6,6 +6,49 @@ alone does not tell you whether you were affected.
6
6
  edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
7
7
  defect; those are called out below.
8
8
 
9
+ ## 0.6.7
10
+
11
+ - **Fixed** `edfcore json --patient` reporting one identification field where every other command
12
+ reports two. The rule is `cli-run.ts`'s own, written above the helper that implements it: the two
13
+ must be gated together, by the same flag, in every command that prints either. `header --patient`
14
+ shows a `recording` line beside the `patient` line; `json --patient` showed `patient` alone.
15
+ - So the same flag meant two different things two commands apart, and the field carrying the
16
+ technician code, the equipment code and the only unambiguous startdate could not be reached from
17
+ the machine-readable output at all. The direction of the mistake is the safe one — nothing
18
+ leaked — which is why nothing found it.
19
+ - `one-flag-two-fields.test.ts` checks both directions over a file whose identification fields are
20
+ populated and non-conformant, so every command has a diagnostic quoting them as well as a field
21
+ holding them: without the flag neither string appears in any of the six commands' output, and
22
+ with it the two commands that report identification report both fields.
23
+ - The docs said "patient identification", which named the EDF field rather than what the flag does.
24
+ They now say both.
25
+
26
+ ## 0.6.6
27
+
28
+ - **Added** `start` to `edfcore json`: the resolved date and clock, each beside the field they came
29
+ from. It was the only command a script could not get the recording's date and time out of —
30
+ `header` prints them on its second line and needs no flag, `signals` is per-signal, `gaps` is
31
+ about onsets, and the machine-readable output had the geometry, the signals and the diagnostic
32
+ codes and no start.
33
+ - The gap was worse than an omission because of where the package sends people. Every file with a
34
+ conformant two-digit year earns `DATE_CLIPPED_TO_1985_2084`, whose `Next:` clause says to read
35
+ the four-digit year the EDF+ recording identification spells out. `edfcore json` reported that
36
+ code and not the field it points at, so the advice could be read from the output and not acted
37
+ on from it.
38
+ - `dateSource` and `clockSource` are reported rather than resolved away, for the reason 0.3.17
39
+ gives: a clock the file did not state is a substituted midnight, midnight is an entirely
40
+ believable start for a sleep study, and without the source those two are one value. Both are
41
+ `null` rather than absent when there is nothing to report — JSON drops `undefined`, and
42
+ `.start.clock` should answer.
43
+ - `--patient` is untouched: the start is the recording's clock, not a person, and `header` has
44
+ always printed it unflagged.
45
+ - **Fixed** `formatHeader` carrying its own clock renderer. `formatClockTime` has been in
46
+ `header/dates.ts` since the clock had a type; the copy in the formatter agreed with it on every
47
+ input, which is exactly the state the DATE half was in until a year below 1000 printed
48
+ `985-04-24` on the start line and `0985-04-24` in a diagnostic eight lines below it (0.3.110).
49
+ Both commands render through the one function now, and `json-reports-the-start.test.ts` checks
50
+ they agree on every shape in the matrix.
51
+
9
52
  ## 0.6.5
10
53
 
11
54
  - **Changed** thirteen lines that hedged a plural with `(s)` to say the number's own plural:
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "edfcore",
3
- "version": "0.6.5",
3
+ "version": "0.6.7",
4
4
  "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
5
5
  "keywords": [
6
6
  "edf",
package/src/cli-run.ts CHANGED
@@ -13,6 +13,7 @@ import { VERSION } from './constants.js';
13
13
  import { formatDiagnostics } from './diagnostics/format.js';
14
14
  import { formatHeader } from './format-header.js';
15
15
  import { formatValidationReport } from './format-report.js';
16
+ import { formatCalendarDate, formatClockTime } from './header/dates.js';
16
17
  import { byteSource } from './io/bytes.js';
17
18
  import { buildRecordIndex } from './record-index.js';
18
19
  import { openEdf, readAnnotations } from './recording.js';
@@ -433,11 +434,56 @@ export async function runCli(args: Args, io: CliIo): Promise<number> {
433
434
  recordCount: header.recordCount,
434
435
  recordDurationSeconds: header.recordDurationSeconds,
435
436
  spanSeconds: recording.timeline.spanSeconds,
436
- // Patient identification is opt-in here for the same reason it is in formatHeader:
437
- // the obvious thing to do with this output is pipe it somewhere.
438
- // `trimEdfField`, for the reason formatHeader uses it: `.trim()` leaves NUL padding
439
- // in place, and JSON.stringify escapes it into a run of `\u0000` in the value.
440
- ...(args.patient ? { patient: trimEdfField(header.patient.raw) } : {}),
437
+ /*
438
+ * The start, which this command was alone in not reporting. `header` prints it on its
439
+ * second line and needs no flag for it, `signals` is per-signal and `gaps` is about
440
+ * onsets, so the machine-readable output was the only one a script could not get the
441
+ * recording's date and time out of.
442
+ *
443
+ * That is worse than an omission, because of where the package sends people:
444
+ * DATE_CLIPPED_TO_1985_2084 fires on any file with a two-digit year and its Next:
445
+ * clause says to read the four-digit year the EDF+ recording identification spells
446
+ * out. `edfcore json` reported the diagnostic and not the field it points at.
447
+ *
448
+ * Both sources are named rather than resolved away. A date that came from the
449
+ * recording identification is the unambiguous one; a clock with `clockSource: 'none'`
450
+ * is a substituted midnight rather than a file that starts at midnight, and 0.3.17 is
451
+ * what happens when those two are one value. `null`, not an omitted key: JSON drops
452
+ * `undefined`, and a reader doing `.start.clock` should get the answer rather than
453
+ * nothing.
454
+ */
455
+ start: {
456
+ date:
457
+ header.startTime.resolvedDate === undefined
458
+ ? null
459
+ : formatCalendarDate(header.startTime.resolvedDate),
460
+ dateSource: header.startTime.dateSource,
461
+ clock:
462
+ header.startTime.clockSource === 'none'
463
+ ? null
464
+ : formatClockTime(header.startTime.clock),
465
+ clockSource: header.startTime.clockSource,
466
+ },
467
+ /*
468
+ * Identification is opt-in here for the same reason it is in `formatHeader`: the
469
+ * obvious thing to do with this output is pipe it somewhere.
470
+ *
471
+ * BOTH fields, on the one flag. `redaction()` above states the rule — the two must be
472
+ * gated together, by the same flag, in every command that prints either — and until
473
+ * 0.6.7 this command printed one of them. `header --patient` shows a `recording` line
474
+ * and `json --patient` did not, so the same flag meant two different things two
475
+ * commands apart, and the field holding the technician code, the equipment code and
476
+ * the only unambiguous startdate was unreachable from the machine-readable output.
477
+ *
478
+ * `trimEdfField`, for the reason formatHeader uses it: `.trim()` leaves NUL padding
479
+ * in place, and JSON.stringify escapes it into a run of `\u0000` in the value.
480
+ */
481
+ ...(args.patient
482
+ ? {
483
+ patient: trimEdfField(header.patient.raw),
484
+ recording: trimEdfField(header.recording.raw),
485
+ }
486
+ : {}),
441
487
  signals: header.signals.map((signal) => ({
442
488
  index: signal.index,
443
489
  label: signal.label,
package/src/constants.ts CHANGED
@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
93
93
  } as const;
94
94
 
95
95
  /** Published package version. Kept in sync with package.json by a test. */
96
- export const VERSION = '0.6.5';
96
+ export const VERSION = '0.6.7';
package/src/format-header.ts CHANGED
@@ -15,7 +15,7 @@
15
15
  import { trimEdfField } from './bytes/latin1.js';
16
16
  import { TICKS_PER_SECOND } from './constants.js';
17
17
  import { summarizeDiagnostics } from './diagnostics/summary.js';
18
- import { formatCalendarDate } from './header/dates.js';
18
+ import { formatCalendarDate, formatClockTime } from './header/dates.js';
19
19
  import { pluralise } from './text/counted.js';
20
20
  import { printable } from './text/printable.js';
21
21
  import type { EdfCalendarDate, EdfHeader, FormatHeaderOptions } from './types.js';
@@ -81,12 +81,11 @@ export function formatHeader(header: EdfHeader, options?: FormatHeaderOptions):
81
81
  // half has always honoured it. The clock half printed `00:00:00` for a starttime field that
82
82
  // failed its grammar — byte-identical to a file that genuinely started at midnight, which for a
83
83
  // sleep study is the most believable start there is (fixed in 0.3.17).
84
- const clock =
85
- start.clockSource === 'none'
86
- ? 'unknown'
87
- : `${String(start.clock.hour).padStart(2, '0')}:` +
88
- `${String(start.clock.minute).padStart(2, '0')}:` +
89
- `${String(start.clock.second).padStart(2, '0')}`;
84
+ // `formatClockTime`, not a second renderer, for the reason `formatDate` above gives about the
85
+ // date half: the private copy of THAT one padded the year differently and printed `985-04-24`
86
+ // here against `0985-04-24` eight lines below. This copy agreed with the shared one on every
87
+ // input, which is the state the date copy was in until it did not (0.6.6).
88
+ const clock = start.clockSource === 'none' ? 'unknown' : formatClockTime(start.clock);
90
89
  lines.push(`start ${formatDate(start.resolvedDate)} ${clock} (local, no timezone)`);
91
90
  lines.push(
92
91
  `record ${header.recordDurationSeconds} s · ${header.recordByteLength} bytes · ` +