edfcore 0.6.289 → 0.6.291
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1 -1
- package/dist/constants.d.ts +1 -1
- package/dist/constants.js +1 -1
- package/dist/envelope.d.ts.map +1 -1
- package/dist/envelope.js +28 -0
- package/dist/envelope.js.map +1 -1
- package/dist/time/window.d.ts.map +1 -1
- package/dist/time/window.js +32 -0
- package/dist/time/window.js.map +1 -1
- package/docs/CHANGELOG.md +37 -0
- package/package.json +1 -1
- package/src/constants.ts +1 -1
- package/src/envelope.ts +30 -0
- package/src/time/window.ts +40 -0
package/README.md
CHANGED
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@@ -81,7 +81,7 @@ for (const event of annotations) {
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}
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```
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-
> **Status: 0.6.x, early.** edfcore runs
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> **Status: 0.6.x, early.** edfcore runs 5,000+ tests on generated fixtures, and it's checked
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> against public corpora it didn't author: the EDF, EDF+ and 24-bit BDF+ test files from
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> teuniz.net, and PhysioNet's sleep-edfx (a real 22-hour polysomnography recording and its
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> sleep-staging file). Those checks are numeric. Channels labelled `sine 8.5 Hz` decode to
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package/dist/constants.d.ts
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@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
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readonly reserved: 224;
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};
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/** Published package version. Kept in sync with package.json by a test. */
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-
export declare const VERSION = "0.6.
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+
export declare const VERSION = "0.6.291";
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//# sourceMappingURL=constants.d.ts.map
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package/dist/constants.js
CHANGED
package/dist/envelope.d.ts.map
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"envelope.d.ts","sourceRoot":"","sources":["../src/envelope.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAuBH,OAAO,KAAK,EACV,cAAc,EAEd,gBAAgB,EAChB,iBAAiB,EAEjB,mBAAmB,EACnB,YAAY,EACZ,SAAS,EACT,iBAAiB,EACjB,WAAW,EAEZ,MAAM,YAAY,CAAC;AA+FpB;;;;;GAKG;AACH,wBAAsB,YAAY,CAChC,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,iBAAiB,EAC5B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,gBAAgB,EAAE,CAAC,CA4DtC;AA+RD;;;;;;;;GAQG;AACH,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,SAAS,EACjB,QAAQ,EAAE,iBAAiB,EAC3B,GAAG,CAAC,EAAE,mBAAmB,GACxB,mBAAmB,CA4MrB;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,iBAAiB,
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1
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{"version":3,"file":"envelope.d.ts","sourceRoot":"","sources":["../src/envelope.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAuBH,OAAO,KAAK,EACV,cAAc,EAEd,gBAAgB,EAChB,iBAAiB,EAEjB,mBAAmB,EACnB,YAAY,EACZ,SAAS,EACT,iBAAiB,EACjB,WAAW,EAEZ,MAAM,YAAY,CAAC;AA+FpB;;;;;GAKG;AACH,wBAAsB,YAAY,CAChC,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,iBAAiB,EAC5B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,gBAAgB,EAAE,CAAC,CA4DtC;AA+RD;;;;;;;;GAQG;AACH,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,SAAS,EACjB,QAAQ,EAAE,iBAAiB,EAC3B,GAAG,CAAC,EAAE,mBAAmB,GACxB,mBAAmB,CA4MrB;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,iBAAiB,CAsEjG;AAQD;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AACH,wBAAsB,wBAAwB,CAC5C,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE;IACT,QAAQ,CAAC,aAAa,EAAE,SAAS,MAAM,EAAE,CAAC;IAC1C,QAAQ,CAAC,YAAY,EAAE,MAAM,CAAC;IAC9B,QAAQ,CAAC,eAAe,EAAE,MAAM,CAAC;IACjC,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;CACnC,EACD,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,gBAAgB,EAAE,CAAC,CAyGtC"}
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package/dist/envelope.js
CHANGED
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@@ -601,6 +601,34 @@ export function envelopeOfSamples(chunkSignal, buckets) {
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// 'length')` (fixed in 0.6.117).
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assertChunkSignal(chunkSignal, 'envelopeOfSamples', 'fold');
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assertPositiveInteger(buckets, 'buckets');
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/*
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* And the COUNT, which the docblock above says this function bounds itself by.
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*
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* It says "`sampleCount` bounds the reduction, not `digital.length`", that the bound is here
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* "because a CALLER can build an `EdfChunkSignal`", and that "two helpers defending and one not
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* is the worst of the three states". The bound it got was `Math.min` against `digital.length`,
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* which only defends against a count that is too LARGE. Below zero it defended nothing, and the
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* buckets argument one line up was checked while the count was not.
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*
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* Every answer it produced was a lie about the samples in hand. A negative count left `total`
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* negative, so the fold loop never ran and the result was one empty bucket carrying the
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* caller's own `sampleCount: -5` — and `toPhysicalEnvelope` renders a bucket of count zero as
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* `NaN`, which is how this package spells a dropout. Forty real samples came back as a hole.
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* `NaN` was worse: `Math.max(1, Math.min(buckets, NaN))` is `NaN`, `new Int32Array(NaN)` has
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* length 0, so the envelope had NO buckets at all — a shape no read in this package produces and
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* nothing downstream expects. A fractional count rode through onto the result as it arrived.
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*
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* `Number.isSafeInteger` and `>= 0`, not `> 0`: zero samples is a real `EdfChunkSignal`, which
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* `trimToWindow` returns for a window that selected nothing, and folding it to empty buckets is
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* the honest answer (0.6.290).
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*/
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if (!Number.isSafeInteger(chunkSignal.sampleCount) || chunkSignal.sampleCount < 0) {
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throw new RangeError(`envelopeOfSamples(): the chunk signal declares ${describeValue(chunkSignal.sampleCount)} ` +
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'samples, which is not a count of them — and this folds by the declared count rather ' +
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'than by digital.length, so the buckets would have described neither. Next: pass one ' +
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'element of chunk.signals unaltered; readWindow() and readRecords() set sampleCount to ' +
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'the samples they decoded.');
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}
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const samples = chunkSignal.digital;
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const total = Math.min(chunkSignal.sampleCount, samples.length);
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const bucketCount = Math.max(1, Math.min(buckets, total));
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package/dist/envelope.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
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|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"window.d.ts","sourceRoot":"","sources":["../../src/time/window.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AAMH,OAAO,KAAK,EACV,cAAc,EACd,SAAS,EACT,cAAc,EAEd,WAAW,EACX,WAAW,EACZ,MAAM,aAAa,CAAC;AAcrB;;;;;;;;;GASG;AACH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,cAAc,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,
|
|
1
|
+
{"version":3,"file":"window.d.ts","sourceRoot":"","sources":["../../src/time/window.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AAMH,OAAO,KAAK,EACV,cAAc,EACd,SAAS,EACT,cAAc,EAEd,WAAW,EACX,WAAW,EACZ,MAAM,aAAa,CAAC;AAcrB;;;;;;;;;GASG;AACH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,cAAc,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CA0E/F;AAgED;;;;;;;;;;;;;;;GAeG;AACH,wBAAgB,iBAAiB,CAC/B,QAAQ,EAAE,WAAW,EACrB,KAAK,EAAE,cAAc,EACrB,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,SAAS,WAAW,EAAE,CAgLxB;AA6ED;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,wBAAgB,YAAY,CAC1B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,cAAc,EAC3B,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,cAAc,CAyGhB"}
|
package/dist/time/window.js
CHANGED
|
@@ -44,6 +44,38 @@ export function assertChunkSignal(chunkSignal, call, verb) {
|
|
|
44
44
|
if (typeof chunkSignal?.signalIndex === 'number') {
|
|
45
45
|
if (ArrayBuffer.isView(chunkSignal.digital))
|
|
46
46
|
return;
|
|
47
|
+
/*
|
|
48
|
+
* An envelope signal is what it SAYS it is, not merely what is left over.
|
|
49
|
+
*
|
|
50
|
+
* The branch below tested the absence of a typed-array `digital` and then declared the argument
|
|
51
|
+
* an envelope signal — so everything with a numeric `signalIndex` and any other `digital` got
|
|
52
|
+
* that sentence: a plain array from `Array.from(chunkSignal.digital)`, a `digital` the caller
|
|
53
|
+
* built field by field, a pending Promise, and above all a chunk signal that has been through
|
|
54
|
+
* JSON. `JSON.stringify` writes an `Int32Array` as `{"0":1,"1":2}`, so a chunk out of a cache, a
|
|
55
|
+
* saved session or a worker boundary arrives with its samples intact and its container gone.
|
|
56
|
+
* `chunks.ts` names that route for this package already — "JSON is how a hole arrives" — and
|
|
57
|
+
* `design-decisions.md` puts it of a chunk: "what parses back has no `.length` where a caller
|
|
58
|
+
* expects one".
|
|
59
|
+
*
|
|
60
|
+
* The advice is what made it costly: "readEnvelope() has already reduced its samples away", said
|
|
61
|
+
* to someone holding the samples, who did pass one element of `chunk.signals` from
|
|
62
|
+
* `readWindow()`. Of the five arguments that reached it, one was an envelope signal.
|
|
63
|
+
*
|
|
64
|
+
* The comment below already names what tells the two shapes apart — "`digital` against
|
|
65
|
+
* `min`/`max`/`counts`" — so this tests for those three instead of inferring them (0.6.291).
|
|
66
|
+
*/
|
|
67
|
+
const envelope = chunkSignal;
|
|
68
|
+
if (!ArrayBuffer.isView(envelope.min) ||
|
|
69
|
+
!ArrayBuffer.isView(envelope.max) ||
|
|
70
|
+
!ArrayBuffer.isView(envelope.counts)) {
|
|
71
|
+
throw new RangeError(`${call}(): the chunk signal's \`digital\` is ` +
|
|
72
|
+
`${describeValue(chunkSignal.digital)}, not the Int32Array a ` +
|
|
73
|
+
'read fills — so there are no samples here to ' +
|
|
74
|
+
`${verb}. Next: pass one element of chunk.signals as readWindow() or readRecords() ` +
|
|
75
|
+
'returned it; JSON.stringify writes an Int32Array as a plain object, so a chunk that ' +
|
|
76
|
+
'went through a cache, a saved session or postMessage with JSON needs its samples ' +
|
|
77
|
+
'rebuilt with new Int32Array(Object.values(digital)).');
|
|
78
|
+
}
|
|
47
79
|
/*
|
|
48
80
|
* An ENVELOPE signal, which the check above cannot tell from a chunk signal.
|
|
49
81
|
*
|
package/dist/time/window.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
package/docs/CHANGELOG.md
CHANGED
|
@@ -6,6 +6,43 @@ alone does not tell you whether you were affected.
|
|
|
6
6
|
edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
|
|
7
7
|
defect; those are called out below.
|
|
8
8
|
|
|
9
|
+
## 0.6.291
|
|
10
|
+
|
|
11
|
+
- **Fixed** `trimToWindow` and `envelopeOfSamples` telling four different wrong arguments "that is an
|
|
12
|
+
envelope signal, not a chunk signal". The guard tested the ABSENCE of a typed-array `digital` and
|
|
13
|
+
inferred an envelope from it, so anything with a numeric `signalIndex` and any other `digital` got
|
|
14
|
+
that sentence. Of the five arguments that reach the branch, one was an envelope signal.
|
|
15
|
+
- The costly route is JSON. `JSON.stringify` writes an `Int32Array` as `{"0":1,"1":2}`, so a chunk out
|
|
16
|
+
of a cache, a saved session, or a `postMessage` that serialises as JSON arrives with every sample
|
|
17
|
+
intact and only its container gone — a route `chunks.ts` already names for this package ("JSON is
|
|
18
|
+
how a hole arrives") and `design-decisions.md` states of a chunk.
|
|
19
|
+
- The advice was the expensive half: "readEnvelope() has already reduced its samples away", said to
|
|
20
|
+
someone holding all forty samples, who did pass one element of `chunk.signals` from `readWindow()`.
|
|
21
|
+
It now names what `digital` actually is and says how to rebuild it.
|
|
22
|
+
- An envelope signal is identified by what it carries — `min`, `max` and `counts`, the three fields
|
|
23
|
+
the guard's own comment already named — rather than by what it lacks. A real envelope signal still
|
|
24
|
+
gets its own message, and a header signal and a value with no `signalIndex` still get theirs.
|
|
25
|
+
- The test-count claim in `README.md`, `installation.md` and `browser-safety.test.ts` moves 4,900+ to
|
|
26
|
+
5,000+, which this release's own tests pushed it past.
|
|
27
|
+
|
|
28
|
+
## 0.6.290
|
|
29
|
+
|
|
30
|
+
- **Fixed** `envelopeOfSamples` folding by a `sampleCount` that is not a count. The bound it had was
|
|
31
|
+
`Math.min(sampleCount, digital.length)`, which defends only against a count that is too large;
|
|
32
|
+
below zero, fractional, or `NaN` it defended nothing, while `buckets` — the other argument — was
|
|
33
|
+
checked one line above.
|
|
34
|
+
- A negative count made the fold loop never run, so the result was one bucket of count zero carrying
|
|
35
|
+
the caller's own `sampleCount: -5`. `toPhysicalEnvelope` renders a bucket of count zero as `NaN`,
|
|
36
|
+
which is how this package spells a dropout — so forty real samples came back as a hole in the
|
|
37
|
+
recording, from the function whose job is to make samples drawable.
|
|
38
|
+
- `NaN` was worse: `Math.max(1, Math.min(buckets, NaN))` is `NaN` and `new Int32Array(NaN)` has
|
|
39
|
+
length 0, so the envelope had no buckets at all — a shape no read in this package produces.
|
|
40
|
+
- The function's own docblock already required this: "`sampleCount` bounds the reduction, not
|
|
41
|
+
`digital.length`... The bound is here because a CALLER can build an `EdfChunkSignal`... two helpers
|
|
42
|
+
defending and one not is the worst of the three states."
|
|
43
|
+
- Zero is still accepted. `trimToWindow` returns a real zero-sample chunk signal for a window that
|
|
44
|
+
selected nothing, and folding it to empty buckets is the honest answer.
|
|
45
|
+
|
|
9
46
|
## 0.6.289
|
|
10
47
|
|
|
11
48
|
- **Fixed** the same hole in `readEnvelope` and `readEnvelopeAtResolution`, which are the last two
|
package/package.json
CHANGED
package/src/constants.ts
CHANGED
package/src/envelope.ts
CHANGED
|
@@ -746,6 +746,36 @@ export function envelopeOfSamples(chunkSignal: EdfChunkSignal, buckets: number):
|
|
|
746
746
|
// 'length')` (fixed in 0.6.117).
|
|
747
747
|
assertChunkSignal(chunkSignal, 'envelopeOfSamples', 'fold');
|
|
748
748
|
assertPositiveInteger(buckets, 'buckets');
|
|
749
|
+
/*
|
|
750
|
+
* And the COUNT, which the docblock above says this function bounds itself by.
|
|
751
|
+
*
|
|
752
|
+
* It says "`sampleCount` bounds the reduction, not `digital.length`", that the bound is here
|
|
753
|
+
* "because a CALLER can build an `EdfChunkSignal`", and that "two helpers defending and one not
|
|
754
|
+
* is the worst of the three states". The bound it got was `Math.min` against `digital.length`,
|
|
755
|
+
* which only defends against a count that is too LARGE. Below zero it defended nothing, and the
|
|
756
|
+
* buckets argument one line up was checked while the count was not.
|
|
757
|
+
*
|
|
758
|
+
* Every answer it produced was a lie about the samples in hand. A negative count left `total`
|
|
759
|
+
* negative, so the fold loop never ran and the result was one empty bucket carrying the
|
|
760
|
+
* caller's own `sampleCount: -5` — and `toPhysicalEnvelope` renders a bucket of count zero as
|
|
761
|
+
* `NaN`, which is how this package spells a dropout. Forty real samples came back as a hole.
|
|
762
|
+
* `NaN` was worse: `Math.max(1, Math.min(buckets, NaN))` is `NaN`, `new Int32Array(NaN)` has
|
|
763
|
+
* length 0, so the envelope had NO buckets at all — a shape no read in this package produces and
|
|
764
|
+
* nothing downstream expects. A fractional count rode through onto the result as it arrived.
|
|
765
|
+
*
|
|
766
|
+
* `Number.isSafeInteger` and `>= 0`, not `> 0`: zero samples is a real `EdfChunkSignal`, which
|
|
767
|
+
* `trimToWindow` returns for a window that selected nothing, and folding it to empty buckets is
|
|
768
|
+
* the honest answer (0.6.290).
|
|
769
|
+
*/
|
|
770
|
+
if (!Number.isSafeInteger(chunkSignal.sampleCount) || chunkSignal.sampleCount < 0) {
|
|
771
|
+
throw new RangeError(
|
|
772
|
+
`envelopeOfSamples(): the chunk signal declares ${describeValue(chunkSignal.sampleCount)} ` +
|
|
773
|
+
'samples, which is not a count of them — and this folds by the declared count rather ' +
|
|
774
|
+
'than by digital.length, so the buckets would have described neither. Next: pass one ' +
|
|
775
|
+
'element of chunk.signals unaltered; readWindow() and readRecords() set sampleCount to ' +
|
|
776
|
+
'the samples they decoded.',
|
|
777
|
+
);
|
|
778
|
+
}
|
|
749
779
|
const samples = chunkSignal.digital;
|
|
750
780
|
const total = Math.min(chunkSignal.sampleCount, samples.length);
|
|
751
781
|
const bucketCount = Math.max(1, Math.min(buckets, total));
|
package/src/time/window.ts
CHANGED
|
@@ -54,6 +54,46 @@ function clampToInt(value: bigint, low: number, high: number): number {
|
|
|
54
54
|
export function assertChunkSignal(chunkSignal: EdfChunkSignal, call: string, verb: string): void {
|
|
55
55
|
if (typeof chunkSignal?.signalIndex === 'number') {
|
|
56
56
|
if (ArrayBuffer.isView((chunkSignal as { digital?: unknown }).digital)) return;
|
|
57
|
+
/*
|
|
58
|
+
* An envelope signal is what it SAYS it is, not merely what is left over.
|
|
59
|
+
*
|
|
60
|
+
* The branch below tested the absence of a typed-array `digital` and then declared the argument
|
|
61
|
+
* an envelope signal — so everything with a numeric `signalIndex` and any other `digital` got
|
|
62
|
+
* that sentence: a plain array from `Array.from(chunkSignal.digital)`, a `digital` the caller
|
|
63
|
+
* built field by field, a pending Promise, and above all a chunk signal that has been through
|
|
64
|
+
* JSON. `JSON.stringify` writes an `Int32Array` as `{"0":1,"1":2}`, so a chunk out of a cache, a
|
|
65
|
+
* saved session or a worker boundary arrives with its samples intact and its container gone.
|
|
66
|
+
* `chunks.ts` names that route for this package already — "JSON is how a hole arrives" — and
|
|
67
|
+
* `design-decisions.md` puts it of a chunk: "what parses back has no `.length` where a caller
|
|
68
|
+
* expects one".
|
|
69
|
+
*
|
|
70
|
+
* The advice is what made it costly: "readEnvelope() has already reduced its samples away", said
|
|
71
|
+
* to someone holding the samples, who did pass one element of `chunk.signals` from
|
|
72
|
+
* `readWindow()`. Of the five arguments that reached it, one was an envelope signal.
|
|
73
|
+
*
|
|
74
|
+
* The comment below already names what tells the two shapes apart — "`digital` against
|
|
75
|
+
* `min`/`max`/`counts`" — so this tests for those three instead of inferring them (0.6.291).
|
|
76
|
+
*/
|
|
77
|
+
const envelope = chunkSignal as unknown as {
|
|
78
|
+
min?: unknown;
|
|
79
|
+
max?: unknown;
|
|
80
|
+
counts?: unknown;
|
|
81
|
+
};
|
|
82
|
+
if (
|
|
83
|
+
!ArrayBuffer.isView(envelope.min) ||
|
|
84
|
+
!ArrayBuffer.isView(envelope.max) ||
|
|
85
|
+
!ArrayBuffer.isView(envelope.counts)
|
|
86
|
+
) {
|
|
87
|
+
throw new RangeError(
|
|
88
|
+
`${call}(): the chunk signal's \`digital\` is ` +
|
|
89
|
+
`${describeValue((chunkSignal as { digital?: unknown }).digital)}, not the Int32Array a ` +
|
|
90
|
+
'read fills — so there are no samples here to ' +
|
|
91
|
+
`${verb}. Next: pass one element of chunk.signals as readWindow() or readRecords() ` +
|
|
92
|
+
'returned it; JSON.stringify writes an Int32Array as a plain object, so a chunk that ' +
|
|
93
|
+
'went through a cache, a saved session or postMessage with JSON needs its samples ' +
|
|
94
|
+
'rebuilt with new Int32Array(Object.values(digital)).',
|
|
95
|
+
);
|
|
96
|
+
}
|
|
57
97
|
/*
|
|
58
98
|
* An ENVELOPE signal, which the check above cannot tell from a chunk signal.
|
|
59
99
|
*
|