npm - edfcore - Versions diffs - 0.6.116 → 0.6.117 - Mend

edfcore 0.6.116 → 0.6.117

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (19) hide show

package/dist/constants.d.ts +1 -1
package/dist/constants.js +1 -1
package/dist/decode/physical.d.ts +28 -0
package/dist/decode/physical.d.ts.map +1 -1
package/dist/decode/physical.js +1 -1
package/dist/decode/physical.js.map +1 -1
package/dist/envelope.d.ts.map +1 -1
package/dist/envelope.js +12 -2
package/dist/envelope.js.map +1 -1
package/dist/time/window.d.ts +11 -0
package/dist/time/window.d.ts.map +1 -1
package/dist/time/window.js +4 -4
package/dist/time/window.js.map +1 -1
package/docs/CHANGELOG.md +11 -0
package/package.json +1 -1
package/src/constants.ts +1 -1
package/src/decode/physical.ts +1 -1
package/src/envelope.ts +12 -2
package/src/time/window.ts +4 -4

package/dist/constants.d.ts CHANGED Viewed

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.6.116";
+export declare const VERSION = "0.6.117";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js CHANGED Viewed

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.6.116';
+export const VERSION = '0.6.117';
 //# sourceMappingURL=constants.js.map

package/dist/decode/physical.d.ts CHANGED Viewed

@@ -30,6 +30,34 @@ export declare function scalingError(signal: EdfSignal, tail?: {
     readonly consequence?: string;
     readonly nextStep?: string;
 }): EdfScalingError;
+/**
+ * `physical = bitValue * (offset + digital)`, in float64 throughout.
+ *
+ * THIS EXPRESSION IS PINNED AND MUST NOT BE "SIMPLIFIED". It is numerically worse than
+ * `physicalMinimum + (digital - digitalMinimum) * gain`, and that is not an accident: it is
+ * EDFlib's exact form, kept verbatim so edfcore reproduces pyEDFlib/EDFlib float64 output
+ * bit for bit. The two forms disagree by up to ~9.3e-10 LSB — ten orders of magnitude below
+ * the quantisation floor, and on asymmetric ranges they differ on nearly half the samples by
+ * one ULP. Rewriting this line breaks the golden-value tests, and rightly so.
+ *
+ * Throws `EdfScalingError` when `signal.scale` is `undefined`. edfcore never fabricates a gain,
+ * and `decodeDigital` keeps working on such a signal.
+ */
+/**
+ * The SIGNAL, before any field of it is read.
+ *
+ * `EdfChunkSignal` is the other per-signal shape and it is the one a reader has in hand after a
+ * read, so `toPhysical(chunk.signals[0], chunk.signals[0].digital)` is the call the arguments
+ * suggest. It has no `scale`, so `toPhysical` took the no-gain branch and `scalingError` then read
+ * `signal.raw.digitalMinimum` off it — V8's `Cannot read properties of undefined`, thrown from
+ * inside the builder of the error that was meant to explain the problem.
+ *
+ * `physicalRangeOf` got further, and worse. It reported `signal undefined "undefined" declares
+ * physical minimum "undefined"` and sent the reader to `header.diagnostics` for a signal that is not
+ * there: a complaint about the FILE for a mistake in the argument, which is the one confusion
+ * `byteSource` says this package works hardest to avoid (fixed in 0.6.104).
+ */
+export declare function assertSignal(signal: EdfSignal, call: string): void;
 export declare function toPhysical(signal: EdfSignal, digital: ArrayLike<number>, out?: Float64Array, options?: MaterializeOptions): Float64Array;
 /**
  * The signal's declared physical bounds, in ascending order.

package/dist/decode/physical.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"physical.d.ts","sourceRoot":"","sources":["../../src/decode/physical.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAkB,eAAe,EAAE,MAAM,cAAc,CAAC;AAG/D,OAAO,KAAK,EAAqC,SAAS,EAAE,MAAM,aAAa,CAAC;AAChF,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,cAAc,CAAC;AAEvD,YAAY,EAAE,kBAAkB,EAAE,MAAM,cAAc,CAAC;AAiKvD;;;;;;;;;;;;;GAaG;AACH,wBAAgB,YAAY,CAC1B,MAAM,EAAE,SAAS,EACjB,IAAI,CAAC,EAAE;IAAE,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAA;CAAE,GACnE,eAAe,CAkBjB;AAyDD;;;;;;;;;;;;GAYG;AACH;;;;;;;;;;;;;GAaG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAWlE;AAED,wBAAgB,UAAU,CACxB,MAAM,EAAE,SAAS,EACjB,OAAO,EAAE,SAAS,CAAC,MAAM,CAAC,EAC1B,GAAG,CAAC,EAAE,YAAY,EAClB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,YAAY,CAcd;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,SAAS,GAAG;IAClD,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;CACvB,CAcA;AAED;;;;;;;GAOG;AACH,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,SAAS,EACjB,OAAO,EAAE,UAAU,EACnB,GAAG,CAAC,EAAE,UAAU,EAChB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,UAAU,CAuBZ"}

package/dist/decode/physical.js CHANGED Viewed

@@ -224,7 +224,7 @@ function resolveInt32Out(out, length, options) {
  * there: a complaint about the FILE for a mistake in the argument, which is the one confusion
  * `byteSource` says this package works hardest to avoid (fixed in 0.6.104).
  */
-function assertSignal(signal, call) {
+export function assertSignal(signal, call) {
     if (typeof signal?.index === 'number' && typeof signal.physicalMinimum === 'number')
         return;
     const chunk = typeof signal?.signalIndex === 'number';

package/dist/decode/physical.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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	@@ -1 +1 @@
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1	+ {"version":3,"file":"envelope.d.ts","sourceRoot":"","sources":["../src/envelope.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAeH,OAAO,KAAK,EACV,cAAc,EAEd,gBAAgB,EAChB,iBAAiB,EAEjB,mBAAmB,EACnB,YAAY,EACZ,SAAS,EACT,iBAAiB,EACjB,WAAW,EAEZ,MAAM,YAAY,CAAC;AAgFpB;;;;;GAKG;AACH,wBAAsB,YAAY,CAChC,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,iBAAiB,EAC5B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,gBAAgB,EAAE,CAAC,CAwBtC;AAgSD;;;;;;;;GAQG;AACH,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,SAAS,EACjB,QAAQ,EAAE,iBAAiB,EAC3B,GAAG,CAAC,EAAE,mBAAmB,GACxB,mBAAmB,CAoErB;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,iBAAiB,CAwCjG;AAQD;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AACH,wBAAsB,wBAAwB,CAC5C,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE;IACT,QAAQ,CAAC,aAAa,EAAE,SAAS,MAAM,EAAE,CAAC;IAC1C,QAAQ,CAAC,YAAY,EAAE,MAAM,CAAC;IAC9B,QAAQ,CAAC,eAAe,EAAE,MAAM,CAAC;IACjC,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;CACnC,EACD,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,gBAAgB,EAAE,CAAC,CA2EtC"}

package/dist/envelope.js CHANGED Viewed

@@ -21,7 +21,7 @@
  * buckets plus one chunk.
  */
 import { decodeDigitalCounted } from './decode/digital.js';
-import { scalingError } from './decode/physical.js';
+import { assertSignal, scalingError } from './decode/physical.js';
 import { appendChunkDiagnostics } from './diagnostics/collector.js';
 import { EdfBudgetError, EdfChannelNotFoundError } from './errors.js';
 import { readRecordBytes } from './io/read.js';
@@ -32,7 +32,7 @@ import { decodeAnnotations } from './tal/annotations.js';
 import { ceilDiv, secondsToTicks, ticksToSeconds } from './tal/ticks.js';
 import { pluralise } from './text/counted.js';
 import { describeValue } from './text/describe.js';
-import { resolveTimeWindow } from './time/window.js';
+import { assertChunkSignal, resolveTimeWindow } from './time/window.js';
 /** `min`, `max` and `counts` are one Int32Array each, so a bucket costs twelve bytes per signal. */
 const BYTES_PER_BUCKET = 12;
 /**
@@ -344,6 +344,11 @@ function foldChunk(accumulator, header, bytes, slice, run, bucketCount, options)
  * envelope whose lower bound is above its upper bound, and a viewer would draw it inside out.
  */
 export function toPhysicalEnvelope(signal, envelope, out) {
+    // The sibling 0.6.104 missed. It guarded `toPhysical`, `physicalRangeOf` and
+    // `clampToDigitalRange`, and this is the fourth function in the package that starts from
+    // `signal.scale` and hands the signal to `scalingError` when there is none — so the same wrong
+    // argument got a message from three of four and a `TypeError` from inside the error builder here.
+    assertSignal(signal, 'toPhysicalEnvelope');
     const scale = signal.scale;
     if (scale === undefined) {
         // `scalingError`, not a hard-coded SCALE_UNAVAILABLE. That code is defined as "none of the
@@ -417,6 +422,11 @@ export function toPhysicalEnvelope(signal, envelope, out) {
  * eventually written down.
  */
 export function envelopeOfSamples(chunkSignal, buckets) {
+    // The mirror of the mistake 0.6.104 guarded next door: that one is the header's signal handed to a
+    // call that wants samples, this is the header's signal handed to a call that IS the samples. It
+    // read `chunkSignal.digital.length` and answered `Cannot read properties of undefined (reading
+    // 'length')` (fixed in 0.6.117).
+    assertChunkSignal(chunkSignal, 'envelopeOfSamples', 'fold');
     assertPositiveInteger(buckets, 'buckets');
     const samples = chunkSignal.digital;
     const total = Math.min(chunkSignal.sampleCount, samples.length);

package/dist/envelope.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/time/window.d.ts CHANGED Viewed

@@ -16,6 +16,17 @@
  * mistake edfcore exists to stop a consumer from re-implementing.
  */
 import type { EdfChunkSignal, EdfHeader, EdfRecordIndex, EdfTimeline, RecordRange } from '../types.js';
+/**
+ * The chunk signal, before the header is asked anything about its index.
+ *
+ * `EdfSignal` and `EdfChunkSignal` are the two per-signal shapes in this package, and they name the
+ * index differently: `index` on the header's, `signalIndex` on the chunk's. Passing the header's —
+ * the one a reader already holds, from `getSignal` or `header.signals[i]` — sent `undefined` into
+ * `signalAt` and earned "signalIndex undefined is not one of the 7 signals in this header … Next:
+ * pass the header the chunk was read with". The header was the argument that was right, and the
+ * advice named it (fixed in 0.6.97).
+ */
+export declare function assertChunkSignal(chunkSignal: EdfChunkSignal, call: string, verb: string): void;
 /**
  * The records a window needs, one `RecordRange` per contiguous run it overlaps, in time order.
  *

package/dist/time/window.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"window.d.ts","sourceRoot":"","sources":["../../src/time/window.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AAMH,OAAO,KAAK,EACV,cAAc,EACd,SAAS,EACT,cAAc,EAEd,WAAW,EACX,WAAW,EACZ,MAAM,aAAa,CAAC;~~AA+CrB~~;;;;;;;;;;;;;;;GAeG;AACH,wBAAgB,iBAAiB,CAC/B,QAAQ,EAAE,WAAW,EACrB,KAAK,EAAE,cAAc,EACrB,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,SAAS,WAAW,EAAE,CA8FxB;AA6ED;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,wBAAgB,YAAY,CAC1B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,cAAc,EAC3B,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,cAAc,CA6EhB"}
1	+ {"version":3,"file":"window.d.ts","sourceRoot":"","sources":["../../src/time/window.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AAMH,OAAO,KAAK,EACV,cAAc,EACd,SAAS,EACT,cAAc,EAEd,WAAW,EACX,WAAW,EACZ,MAAM,aAAa,CAAC;AAcrB;;;;;;;;;GASG;AACH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,cAAc,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAU/F;AAaD;;;;;;;;;;;;;;;GAeG;AACH,wBAAgB,iBAAiB,CAC/B,QAAQ,EAAE,WAAW,EACrB,KAAK,EAAE,cAAc,EACrB,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,SAAS,WAAW,EAAE,CA8FxB;AA6ED;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,wBAAgB,YAAY,CAC1B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,cAAc,EAC3B,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,cAAc,CA6EhB"}

package/dist/time/window.js CHANGED Viewed

@@ -40,12 +40,12 @@ function clampToInt(value, low, high) {
  * pass the header the chunk was read with". The header was the argument that was right, and the
  * advice named it (fixed in 0.6.97).
  */
-function assertChunkSignal(chunkSignal) {
+export function assertChunkSignal(chunkSignal, call, verb) {
     if (typeof chunkSignal?.signalIndex === 'number')
         return;
     const headerSignal = typeof chunkSignal?.index === 'number';
-    throw new RangeError(`trimToWindow(): the second argument is ${headerSignal
-        ? 'a header signal, which carries no samples to trim'
+    throw new RangeError(`${call}(): the signal is ${headerSignal
+        ? `a header signal, which carries no samples to ${verb}`
         : `${describeValue(chunkSignal)} with no signalIndex on it`}. Next: pass one element of chunk.signals — the array readWindow() and readRecords() fill.`);
 }
 function signalAt(header, signalIndex) {
@@ -241,7 +241,7 @@ function trimmed(chunkSignal, signal, firstIndex, sampleCount, start) {
  * that exist; one that misses it entirely yields a zero-length result rather than an error.
  */
 export function trimToWindow(header, chunkSignal, startSeconds, durationSeconds) {
-    assertChunkSignal(chunkSignal);
+    assertChunkSignal(chunkSignal, 'trimToWindow', 'trim');
     const signal = signalAt(header, chunkSignal.signalIndex);
     const samplesPerRecord = signal.samplesPerRecord;
     const durationTicks = header.recordDurationTicks;

package/dist/time/window.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/docs/CHANGELOG.md CHANGED Viewed

@@ -6,6 +6,17 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
+## 0.6.117
+- **Fixed** the two per-signal arguments the envelope module did not check, one in each direction.
+- `toPhysicalEnvelope` is the fourth function in the package that starts from `signal.scale` and
+  hands the signal to `scalingError` when there is none, and it was the one 0.6.104 missed — so a
+  chunk signal got a message from three of four and a `TypeError` from inside the error builder here.
+- `envelopeOfSamples` is the mirror: it takes the chunk signal, so the header's is the wrong one, and
+  it read `chunkSignal.digital.length` and answered `Cannot read properties of undefined (reading
+  'length')`. It now shares `trimToWindow`'s refusal from 0.6.97, which is the same argument in the
+  same shape.
 ## 0.6.116
 - **Fixed** `fileSource(bytes)` opening the file's own bytes as a filename. `fs.open` accepts a

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.6.116",
+  "version": "0.6.117",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/constants.ts CHANGED Viewed

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.6.116';
+export const VERSION = '0.6.117';

package/src/decode/physical.ts CHANGED Viewed

@@ -295,7 +295,7 @@ function resolveInt32Out(
  * there: a complaint about the FILE for a mistake in the argument, which is the one confusion
  * `byteSource` says this package works hardest to avoid (fixed in 0.6.104).
  */
-function assertSignal(signal: EdfSignal, call: string): void {
+export function assertSignal(signal: EdfSignal, call: string): void {
   if (typeof signal?.index === 'number' && typeof signal.physicalMinimum === 'number') return;
   const chunk = typeof (signal as unknown as EdfChunkSignal | undefined)?.signalIndex === 'number';
   throw new RangeError(

package/src/envelope.ts CHANGED Viewed

@@ -22,7 +22,7 @@
  */
 import { decodeDigitalCounted } from './decode/digital.js';
-import { scalingError } from './decode/physical.js';
+import { assertSignal, scalingError } from './decode/physical.js';
 import { appendChunkDiagnostics } from './diagnostics/collector.js';
 import { EdfBudgetError, EdfChannelNotFoundError } from './errors.js';
 import { readRecordBytes } from './io/read.js';
@@ -33,7 +33,7 @@ import { decodeAnnotations } from './tal/annotations.js';
 import { ceilDiv, secondsToTicks, ticksToSeconds } from './tal/ticks.js';
 import { pluralise } from './text/counted.js';
 import { describeValue } from './text/describe.js';
-import { resolveTimeWindow } from './time/window.js';
+import { assertChunkSignal, resolveTimeWindow } from './time/window.js';
 import type {
   EdfChunkSignal,
   EdfDiagnostic,
@@ -462,6 +462,11 @@ export function toPhysicalEnvelope(
   envelope: EdfEnvelopeSignal,
   out?: EdfPhysicalEnvelope,
 ): EdfPhysicalEnvelope {
+  // The sibling 0.6.104 missed. It guarded `toPhysical`, `physicalRangeOf` and
+  // `clampToDigitalRange`, and this is the fourth function in the package that starts from
+  // `signal.scale` and hands the signal to `scalingError` when there is none — so the same wrong
+  // argument got a message from three of four and a `TypeError` from inside the error builder here.
+  assertSignal(signal, 'toPhysicalEnvelope');
   const scale = signal.scale;
   if (scale === undefined) {
     // `scalingError`, not a hard-coded SCALE_UNAVAILABLE. That code is defined as "none of the
@@ -541,6 +546,11 @@ export function toPhysicalEnvelope(
  * eventually written down.
  */
 export function envelopeOfSamples(chunkSignal: EdfChunkSignal, buckets: number): EdfEnvelopeSignal {
+  // The mirror of the mistake 0.6.104 guarded next door: that one is the header's signal handed to a
+  // call that wants samples, this is the header's signal handed to a call that IS the samples. It
+  // read `chunkSignal.digital.length` and answered `Cannot read properties of undefined (reading
+  // 'length')` (fixed in 0.6.117).
+  assertChunkSignal(chunkSignal, 'envelopeOfSamples', 'fold');
   assertPositiveInteger(buckets, 'buckets');
   const samples = chunkSignal.digital;
   const total = Math.min(chunkSignal.sampleCount, samples.length);

package/src/time/window.ts CHANGED Viewed

@@ -51,13 +51,13 @@ function clampToInt(value: bigint, low: number, high: number): number {
  * pass the header the chunk was read with". The header was the argument that was right, and the
  * advice named it (fixed in 0.6.97).
  */
-function assertChunkSignal(chunkSignal: EdfChunkSignal): void {
+export function assertChunkSignal(chunkSignal: EdfChunkSignal, call: string, verb: string): void {
   if (typeof chunkSignal?.signalIndex === 'number') return;
   const headerSignal = typeof (chunkSignal as unknown as EdfSignal | undefined)?.index === 'number';
   throw new RangeError(
-    `trimToWindow(): the second argument is ${
+    `${call}(): the signal is ${
       headerSignal
-        ? 'a header signal, which carries no samples to trim'
+        ? `a header signal, which carries no samples to ${verb}`
         : `${describeValue(chunkSignal)} with no signalIndex on it`
     }. Next: pass one element of chunk.signals — the array readWindow() and readRecords() fill.`,
   );
@@ -294,7 +294,7 @@ export function trimToWindow(
   startSeconds: number,
   durationSeconds: number,
 ): EdfChunkSignal {
-  assertChunkSignal(chunkSignal);
+  assertChunkSignal(chunkSignal, 'trimToWindow', 'trim');
   const signal = signalAt(header, chunkSignal.signalIndex);
   const samplesPerRecord = signal.samplesPerRecord;
   const durationTicks = header.recordDurationTicks;