edfcore 0.6.11 → 0.6.13

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Files changed (9) hide show
  1. package/dist/cli-run.d.ts.map +1 -1
  2. package/dist/cli-run.js +44 -1
  3. package/dist/cli-run.js.map +1 -1
  4. package/dist/constants.d.ts +1 -1
  5. package/dist/constants.js +1 -1
  6. package/docs/CHANGELOG.md +37 -0
  7. package/package.json +1 -1
  8. package/src/cli-run.ts +44 -1
  9. package/src/constants.ts +1 -1
package/dist/cli-run.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"cli-run.d.ts","sourceRoot":"","sources":["../src/cli-run.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAgBH;;;;;;;;;;;GAWG;AACH,qBAAa,aAAc,SAAQ,UAAU;IAC3C,QAAQ,CAAC,KAAK,EAAG,IAAI,CAAU;gBAEnB,OAAO,EAAE,MAAM;CAI5B;AAED,iDAAiD;AACjD,MAAM,WAAW,KAAK;IACpB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;IAC5C,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AA4CD;;;;GAIG;AACH,MAAM,WAAW,IAAI;IACnB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IAClC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;CACpC;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,CAkDvD;AAoCD;;;;GAIG;AACH,wBAAsB,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CAiTnE"}
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+ {"version":3,"file":"cli-run.d.ts","sourceRoot":"","sources":["../src/cli-run.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAgBH;;;;;;;;;;;GAWG;AACH,qBAAa,aAAc,SAAQ,UAAU;IAC3C,QAAQ,CAAC,KAAK,EAAG,IAAI,CAAU;gBAEnB,OAAO,EAAE,MAAM;CAI5B;AAED,iDAAiD;AACjD,MAAM,WAAW,KAAK;IACpB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;IAC5C,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AA4CD;;;;GAIG;AACH,MAAM,WAAW,IAAI;IACnB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IAClC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;CACpC;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,CAkDvD;AAoCD;;;;GAIG;AACH,wBAAsB,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CA4VnE"}
package/dist/cli-run.js CHANGED
@@ -370,6 +370,22 @@ export async function runCli(args, io) {
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  recordCount: header.recordCount,
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  recordDurationSeconds: header.recordDurationSeconds,
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  spanSeconds: recording.timeline.spanSeconds,
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+ /*
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+ * What the records COVER, beside what they SPAN.
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+ *
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+ * `spanSeconds` alone is the number `formatHeader` refuses to print unlabelled: on a
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+ * file with a hole it is the last record's end minus the first's start, gaps included,
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+ * so a script sizing a buffer or counting samples from it is out by the gaps.
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+ * `edfcore header` switches its label from `duration` to `covered` and adds two lines
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+ * saying where the span comes from; this had the one number and no label at all.
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+ *
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+ * The pair is also the only thing here that detects a hole without believing the file.
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+ * `variant` and `header.continuity` both carry the DECLARED claim, and
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+ * `DISCONTINUITY_IN_CONTINUOUS_FILE` exists for the file where that claim is false —
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+ * so the field a script would have branched on is the field that is wrong. Two numbers
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+ * that differ are measured, and they differ by exactly the gaps.
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+ */
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+ coveredSeconds: recording.timeline.coveredSeconds,
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  /*
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  * The start, which this command was alone in not reporting. `header` prints it on its
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  * second line and needs no flag for it, `signals` is per-signal and `gaps` is about
@@ -426,7 +442,34 @@ export async function runCli(args, io) {
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  sampleRateHz: signal.sampleRateHz,
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  physicalDimension: signal.physicalDimension,
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  })),
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- diagnostics: header.diagnostics.map((d) => ({ code: d.code, severity: d.severity })),
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+ /*
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+ * The probe's findings too, which is the fix 0.3.94 made to `edfcore header` and did
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+ * not make here. `openEdf` reads record 0 and the last record and puts what it learned
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+ * on `recording.timeline.diagnostics`; this command has already paid for that read and
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+ * reports the span it produced two lines up.
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+ *
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+ * Dropping them cost more here than it did there. An EDF+C file with a real hole
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+ * reported one `info` and never mentioned DISCONTINUITY_IN_CONTINUOUS_FILE, while
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+ * `edfcore gaps` on the same file printed a 20-second gap — and this is the output a
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+ * pipeline branches on, so `select(.severity == "warning")` saw a clean file. The
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+ * `variant` field is not a substitute: the whole point of that code is a file whose
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+ * reserved field says continuous when its onsets do not.
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+ *
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+ * `source` keeps the distinction `edfcore header` shows by printing them under their
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+ * own heading. One array, because a consumer filtering by severity wants one array.
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+ */
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+ diagnostics: [
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+ ...header.diagnostics.map((d) => ({
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+ code: d.code,
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+ severity: d.severity,
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+ source: 'header',
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+ })),
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+ ...recording.timeline.diagnostics.map((d) => ({
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+ code: d.code,
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+ severity: d.severity,
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+ source: 'recordProbe',
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+ })),
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+ ],
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  }, null, 2)}\n`);
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  return 0;
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  }
package/dist/cli-run.js.map CHANGED
@@ -1 +1 @@
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package/dist/constants.d.ts CHANGED
@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
109
109
  readonly reserved: 224;
110
110
  };
111
111
  /** Published package version. Kept in sync with package.json by a test. */
112
- export declare const VERSION = "0.6.11";
112
+ export declare const VERSION = "0.6.13";
113
113
  //# sourceMappingURL=constants.d.ts.map
package/dist/constants.js CHANGED
@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
79
79
  reserved: 224,
80
80
  };
81
81
  /** Published package version. Kept in sync with package.json by a test. */
82
- export const VERSION = '0.6.11';
82
+ export const VERSION = '0.6.13';
83
83
  //# sourceMappingURL=constants.js.map
package/docs/CHANGELOG.md CHANGED
@@ -6,6 +6,43 @@ alone does not tell you whether you were affected.
6
6
  edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
7
7
  defect; those are called out below.
8
8
 
9
+ ## 0.6.13
10
+
11
+ - **Added** `coveredSeconds` to `edfcore json`, beside the `spanSeconds` that was there alone.
12
+ A span is the last record's end minus the first record's start with the gaps included, which is
13
+ why `formatHeader` refuses to print it unlabelled: on a discontinuous file it switches the label
14
+ from `duration` to `covered` and adds two lines saying the gaps are not in the number. The
15
+ machine-readable output had the one number and no label, so a script sizing a buffer or counting
16
+ samples from it was out by the gaps, silently, and only on the files that have them.
17
+ - The pair is also the only thing in the document that finds a hole without believing the file.
18
+ `variant` and `header.continuity` both carry the DECLARED claim — `EdfVariant`'s own docblock
19
+ says "neither is a promise" — and `DISCONTINUITY_IN_CONTINUOUS_FILE` exists for the file where
20
+ that claim is false. So the field a script would have branched on is the field that is wrong,
21
+ while two measured numbers that differ do so by exactly the gaps: on the fixture this was found
22
+ with, `spanSeconds` is 24, `coveredSeconds` is 4, and `variant` says `EDF+C`.
23
+ - `continuity` was written and taken back out. It is the same declared claim `variant` already
24
+ carries, and a second spelling of a value that can be wrong is not worth a key.
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+
26
+ ## 0.6.12
27
+
28
+ - **Fixed** `edfcore json` dropping what the record probes found. `openEdf` reads record 0 and the
29
+ last record and puts what it learned on `recording.timeline.diagnostics`; this command's
30
+ `diagnostics` came from `header.diagnostics` alone. It is the defect 0.3.94 fixed in
31
+ `edfcore header`, on the same file, unfixed in the sibling command.
32
+ - It cost more here. An EDF+C file with a real hole emitted one `info` and never mentioned
33
+ `DISCONTINUITY_IN_CONTINUOUS_FILE`, so a pipeline doing
34
+ `select(.severity == "warning")` saw a clean file — while `edfcore gaps` on the same bytes
35
+ printed a 20-second gap and `spanSeconds`, two keys up in the same document, read 24 against
36
+ four records covering 4 s.
37
+ - `variant` is not a substitute and cannot be: that code exists precisely for the file whose
38
+ reserved field says `EDF+C` while its onsets say otherwise, so the field a script would check is
39
+ the field that is wrong.
40
+ - **Changed**: every entry in `diagnostics` now carries `source`, `"header"` or `"recordProbe"`.
41
+ One array rather than two, because a consumer filtering by severity wants one array; the field
42
+ keeps the distinction `edfcore header` shows by printing the probe's findings under their own
43
+ heading. A consumer reading `code` and `severity` is unaffected, and one counting entries sees
44
+ more of them on a file that had something to say.
45
+
9
46
  ## 0.6.11
10
47
 
11
48
  - **Fixed** `--help` still describing `--patient` as "include patient identification" after 0.6.7
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "edfcore",
3
- "version": "0.6.11",
3
+ "version": "0.6.13",
4
4
  "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
5
5
  "keywords": [
6
6
  "edf",
package/src/cli-run.ts CHANGED
@@ -434,6 +434,22 @@ export async function runCli(args: Args, io: CliIo): Promise<number> {
434
434
  recordCount: header.recordCount,
435
435
  recordDurationSeconds: header.recordDurationSeconds,
436
436
  spanSeconds: recording.timeline.spanSeconds,
437
+ /*
438
+ * What the records COVER, beside what they SPAN.
439
+ *
440
+ * `spanSeconds` alone is the number `formatHeader` refuses to print unlabelled: on a
441
+ * file with a hole it is the last record's end minus the first's start, gaps included,
442
+ * so a script sizing a buffer or counting samples from it is out by the gaps.
443
+ * `edfcore header` switches its label from `duration` to `covered` and adds two lines
444
+ * saying where the span comes from; this had the one number and no label at all.
445
+ *
446
+ * The pair is also the only thing here that detects a hole without believing the file.
447
+ * `variant` and `header.continuity` both carry the DECLARED claim, and
448
+ * `DISCONTINUITY_IN_CONTINUOUS_FILE` exists for the file where that claim is false —
449
+ * so the field a script would have branched on is the field that is wrong. Two numbers
450
+ * that differ are measured, and they differ by exactly the gaps.
451
+ */
452
+ coveredSeconds: recording.timeline.coveredSeconds,
437
453
  /*
438
454
  * The start, which this command was alone in not reporting. `header` prints it on its
439
455
  * second line and needs no flag for it, `signals` is per-signal and `gaps` is about
@@ -492,7 +508,34 @@ export async function runCli(args: Args, io: CliIo): Promise<number> {
492
508
  sampleRateHz: signal.sampleRateHz,
493
509
  physicalDimension: signal.physicalDimension,
494
510
  })),
495
- diagnostics: header.diagnostics.map((d) => ({ code: d.code, severity: d.severity })),
511
+ /*
512
+ * The probe's findings too, which is the fix 0.3.94 made to `edfcore header` and did
513
+ * not make here. `openEdf` reads record 0 and the last record and puts what it learned
514
+ * on `recording.timeline.diagnostics`; this command has already paid for that read and
515
+ * reports the span it produced two lines up.
516
+ *
517
+ * Dropping them cost more here than it did there. An EDF+C file with a real hole
518
+ * reported one `info` and never mentioned DISCONTINUITY_IN_CONTINUOUS_FILE, while
519
+ * `edfcore gaps` on the same file printed a 20-second gap — and this is the output a
520
+ * pipeline branches on, so `select(.severity == "warning")` saw a clean file. The
521
+ * `variant` field is not a substitute: the whole point of that code is a file whose
522
+ * reserved field says continuous when its onsets do not.
523
+ *
524
+ * `source` keeps the distinction `edfcore header` shows by printing them under their
525
+ * own heading. One array, because a consumer filtering by severity wants one array.
526
+ */
527
+ diagnostics: [
528
+ ...header.diagnostics.map((d) => ({
529
+ code: d.code,
530
+ severity: d.severity,
531
+ source: 'header' as const,
532
+ })),
533
+ ...recording.timeline.diagnostics.map((d) => ({
534
+ code: d.code,
535
+ severity: d.severity,
536
+ source: 'recordProbe' as const,
537
+ })),
538
+ ],
496
539
  },
497
540
  null,
498
541
  2,
package/src/constants.ts CHANGED
@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
93
93
  } as const;
94
94
 
95
95
  /** Published package version. Kept in sync with package.json by a test. */
96
- export const VERSION = '0.6.11';
96
+ export const VERSION = '0.6.13';