edfcore 0.3.70 → 0.3.72

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Files changed (12) hide show
  1. package/CHANGELOG.md +35 -0
  2. package/dist/constants.d.ts +1 -1
  3. package/dist/constants.js +1 -1
  4. package/dist/header/signals.d.ts.map +1 -1
  5. package/dist/header/signals.js +13 -4
  6. package/dist/header/signals.js.map +1 -1
  7. package/dist/types.d.ts +10 -1
  8. package/dist/types.d.ts.map +1 -1
  9. package/package.json +1 -1
  10. package/src/constants.ts +1 -1
  11. package/src/header/signals.ts +13 -3
  12. package/src/types.ts +10 -1
package/CHANGELOG.md CHANGED
@@ -6,6 +6,41 @@ alone does not tell you whether you were affected.
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  edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
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  defect; those are called out below.
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+ ## 0.3.72
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+
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+ - **Fixed** `DIGITAL_RANGE_EXCEEDS_FORMAT` promising scaling behaviour on a channel that has none.
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+ - The check runs for every signal, which is right: a BDF range in an EDF+ file, or an unsigned
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+ 24-bit range in a BDF+ one, is exactly the sample-width confusion it exists to catch, wherever
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+ it appears. Its consequence clause was not right for every signal. On an **annotations**
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+ channel it still said "the declared range is used for scaling exactly as written — edfcore
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+ never clamps — so expect physical values that extrapolate beyond the declared physical range".
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+ - Nothing is scaled from those fields. The branch fifteen lines below deliberately skips
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+ `buildScale` for an annotations channel, `signal.scale` is `undefined`, the bytes are TAL text,
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+ and `toPhysical` throws `EdfScalingError` for it. The reader was told to expect a conversion
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+ that cannot happen, and given no reason to fix the field that is actually wrong.
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+ - It now says nothing is scaled from them, names why (`toPhysical` refuses the channel), and says
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+ the range is still worth correcting because it records that the writer confused the two sample
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+ widths. Data signals keep the wording they had, byte for byte.
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+ - The warning itself is unchanged in code, severity and location — only the "Next:" clause branches.
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+
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+ ## 0.3.71
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+
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+ - **Corrected** `EdfRecordIndex.onsetTicks`, documented in three places as "one targeted read of
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+ that record's annotation region". It reads the whole data record.
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+ - `record-index.ts`'s own module docblock has always said so and calls it decision 7 of the
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+ design: the unit of I/O is the record range, never the channel range, and `decodeAnnotations`
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+ owns the timekeeping rule and needs the record's full bytes to apply it. So the implementation
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+ and its published type disagreed about the same call.
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+ - The gap is not small. On a 64-channel file the annotation region is **32 bytes of a 16,416-byte
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+ record** — a 513x understatement — and `locate()` issues `O(log recordCount)` of these. Cost is
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+ exactly what a reader consults that line for when planning HTTP range requests over a remote
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+ file, which is the case this package exists to serve.
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+ - Fixed on the type (which ships in `dist/types.d.ts`), in `api-types.md`'s table, and in
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+ `concepts.md`, which described `locate` as costing "targeted reads".
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+ - `tests/io/read-pattern.test.ts` now pins it: one read, of `header.recordByteLength` bytes, at the
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+ record's own offset, and none at all on the second call. It asserts the 32-versus-16,416 premise
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+ first, so it cannot pass on a file where the distinction would not show.
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+
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  ## 0.3.70
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  - **Corrected** `EdfEnvelopeChunk.bucketCount`, documented as "Buckets actually filled. Never more
package/dist/constants.d.ts CHANGED
@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
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  readonly reserved: 224;
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export declare const VERSION = "0.3.70";
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+ export declare const VERSION = "0.3.72";
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  //# sourceMappingURL=constants.d.ts.map
package/dist/constants.js CHANGED
@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
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  reserved: 224,
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export const VERSION = '0.3.70';
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+ export const VERSION = '0.3.72';
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  //# sourceMappingURL=constants.js.map
package/dist/header/signals.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"signals.d.ts","sourceRoot":"","sources":["../../src/header/signals.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAKH,OAAO,EAIL,mBAAmB,EACpB,MAAM,iBAAiB,CAAC;AACzB,OAAO,EAAE,KAAK,cAAc,EAAc,MAAM,6BAA6B,CAAC;AAC9E,OAAO,KAAK,EAAgC,SAAS,EAAE,MAAM,aAAa,CAAC;AAI3E,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,cAAc,CAAC;AAEnD,gDAAgD;AAChD,MAAM,MAAM,eAAe,GAAG,MAAM,OAAO,mBAAmB,CAAC;AAE/D;;;;;;GAMG;AACH,MAAM,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,EAAE,aAAa,CAAC,CAAC;AAEzD,MAAM,WAAW,iBAAiB;IAChC,8FAA8F;IAC9F,QAAQ,CAAC,WAAW,EAAE,UAAU,CAAC;IACjC,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,QAAQ,CAAC,OAAO,EAAE,cAAc,CAAC;IACjC,8EAA8E;IAC9E,QAAQ,CAAC,qBAAqB,EAAE,MAAM,CAAC;CACxC;AAED,MAAM,WAAW,mBAAmB;IAClC,QAAQ,CAAC,OAAO,EAAE,SAAS,WAAW,EAAE,CAAC;IACzC,4FAA4F;IAC5F,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;IAClC,QAAQ,CAAC,iBAAiB,EAAE,SAAS,MAAM,EAAE,CAAC;IAC9C,QAAQ,CAAC,uBAAuB,EAAE,SAAS,MAAM,EAAE,CAAC;CACrD;AAqBD;;;;;;GAMG;AACH,wBAAgB,iBAAiB,CAC/B,KAAK,EAAE,eAAe,EACtB,WAAW,EAAE,MAAM,EACnB,WAAW,EAAE,MAAM,GAClB,MAAM,CAMR;AAsRD;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAChC,KAAK,EAAE,iBAAiB,EACxB,IAAI,EAAE,cAAc,GACnB,mBAAmB,CA2KrB;AAED,qFAAqF;AACrF,wBAAgB,YAAY,CAC1B,MAAM,EAAE,SAAS,WAAW,EAAE,EAC9B,WAAW,EAAE,MAAM,GAClB,SAAS,SAAS,EAAE,CAItB"}
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+ {"version":3,"file":"signals.d.ts","sourceRoot":"","sources":["../../src/header/signals.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAKH,OAAO,EAIL,mBAAmB,EACpB,MAAM,iBAAiB,CAAC;AACzB,OAAO,EAAE,KAAK,cAAc,EAAc,MAAM,6BAA6B,CAAC;AAC9E,OAAO,KAAK,EAAgC,SAAS,EAAE,MAAM,aAAa,CAAC;AAI3E,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,cAAc,CAAC;AAEnD,gDAAgD;AAChD,MAAM,MAAM,eAAe,GAAG,MAAM,OAAO,mBAAmB,CAAC;AAE/D;;;;;;GAMG;AACH,MAAM,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,EAAE,aAAa,CAAC,CAAC;AAEzD,MAAM,WAAW,iBAAiB;IAChC,8FAA8F;IAC9F,QAAQ,CAAC,WAAW,EAAE,UAAU,CAAC;IACjC,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,QAAQ,CAAC,OAAO,EAAE,cAAc,CAAC;IACjC,8EAA8E;IAC9E,QAAQ,CAAC,qBAAqB,EAAE,MAAM,CAAC;CACxC;AAED,MAAM,WAAW,mBAAmB;IAClC,QAAQ,CAAC,OAAO,EAAE,SAAS,WAAW,EAAE,CAAC;IACzC,4FAA4F;IAC5F,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;IAClC,QAAQ,CAAC,iBAAiB,EAAE,SAAS,MAAM,EAAE,CAAC;IAC9C,QAAQ,CAAC,uBAAuB,EAAE,SAAS,MAAM,EAAE,CAAC;CACrD;AAqBD;;;;;;GAMG;AACH,wBAAgB,iBAAiB,CAC/B,KAAK,EAAE,eAAe,EACtB,WAAW,EAAE,MAAM,EACnB,WAAW,EAAE,MAAM,GAClB,MAAM,CAMR;AAgSD;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAChC,KAAK,EAAE,iBAAiB,EACxB,IAAI,EAAE,cAAc,GACnB,mBAAmB,CA2KrB;AAED,qFAAqF;AACrF,wBAAgB,YAAY,CAC1B,MAAM,EAAE,SAAS,WAAW,EAAE,EAC9B,WAAW,EAAE,MAAM,GAClB,SAAS,SAAS,EAAE,CAItB"}
package/dist/header/signals.js CHANGED
@@ -148,7 +148,7 @@ function parseSamplesPerRecord(input, raw, signalIndex, sink) {
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  * format means the writer's scale is inconsistent with its own samples — but the samples still
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  * decode, and edfcore reports the mismatch rather than choosing a range for it.
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  */
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- function checkDigitalRangeFitsFormat(input, signalIndex, digitalMinimum, digitalMaximum, raw, sink) {
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+ function checkDigitalRangeFitsFormat(input, signalIndex, kind, digitalMinimum, digitalMaximum, raw, sink) {
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  const low = input.variant.digitalMinimumLimit;
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  const high = input.variant.digitalMaximumLimit;
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  const outside = [digitalMinimum, digitalMaximum].some((value) => value < low || value > high);
@@ -163,8 +163,17 @@ function checkDigitalRangeFitsFormat(input, signalIndex, digitalMinimum, digital
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  `${signalFieldOffset('digitalMaximum', input.signalCount, signalIndex)}), but a ` +
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  `${input.variant.family} sample is ${input.variant.bytesPerSample * 8}-bit two's ` +
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  `complement and can only hold ${low}..${high}. ${DIGITAL_RANGE_SPEC_REFERENCE}. Next: ` +
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- 'the declared range is used for scaling exactly as written — edfcore never clamps — so ' +
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- 'expect physical values that extrapolate beyond the declared physical range.',
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+ // The warning is worth making on any channel — a range outside the sample width is the
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+ // BDF/EDF confusion this check exists for — but the consequence is not the same one. An
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+ // annotations channel gets NO scale (the branch below skips `buildScale`), its bytes are
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+ // TAL text, and `toPhysical` throws for it, so telling the reader to expect extrapolated
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+ // physical values described a conversion that cannot happen (fixed in 0.3.72).
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+ (kind === 'annotations'
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+ ? 'nothing is scaled from these fields. An annotations signal carries TAL text rather ' +
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+ 'than a measurement, so no scale is built for it and toPhysical() refuses it. The ' +
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+ 'range is worth correcting because it says the writer confused the two sample widths.'
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+ : 'the declared range is used for scaling exactly as written — edfcore never clamps — ' +
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+ 'so expect physical values that extrapolate beyond the declared physical range.'),
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  field: 'digitalMinimum',
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  byteOffset,
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  byteLength: SIGNAL_FIELD_WIDTHS.digitalMinimum,
@@ -286,7 +295,7 @@ export function parseSignalHeaders(input, sink) {
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  'gain for a range it cannot read', SIGNAL_SPEC_REFERENCE), sink);
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  const physicalMaximum = requireNumericField(parseEdfNumber(raw.physicalMaximum), numericContext(input, 'physicalMaximum', index, 'a number, written in ASCII digits with "." as the decimal separator', 'the physical range defines the scale of this signal, and edfcore will not invent a ' +
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  'gain for a range it cannot read', SIGNAL_SPEC_REFERENCE), sink);
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- checkDigitalRangeFitsFormat(input, index, digitalMinimum, digitalMaximum, raw, sink);
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+ checkDigitalRangeFitsFormat(input, index, kind, digitalMinimum, digitalMaximum, raw, sink);
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  let scale;
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  if (kind === 'annotations') {
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  checkAnnotationSignalHeader(input, index, raw, digitalMinimum, digitalMaximum, sink);
package/dist/header/signals.js.map CHANGED
@@ -1 +1 @@
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1
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package/dist/types.d.ts CHANGED
@@ -328,7 +328,16 @@ export interface EdfRecordIndex {
328
328
  * on this object may ever read as "continuous" when we have not checked. */
329
329
  readonly segments: readonly EdfSegment[] | undefined;
330
330
  readonly gaps: readonly EdfGap[] | undefined;
331
- /** One targeted read of that record's annotation region. Memoised. */
331
+ /**
332
+ * One read of that WHOLE data record — `header.recordByteLength` bytes. Memoised.
333
+ *
334
+ * Not the annotation region alone, which this said until 0.3.71. The unit of I/O in edfcore is
335
+ * the record, never the channel (decision 7), and `decodeAnnotations` owns the timekeeping rule
336
+ * and needs the record's full bytes to apply it. On a 64-channel file the region is 32 bytes of
337
+ * a 16,416-byte record, so "targeted" understated the read by 513x — and `locate()` issues
338
+ * O(log recordCount) of them, which is exactly the number a caller planning HTTP range requests
339
+ * is reading this line to compute.
340
+ */
332
341
  onsetTicks(recordIndex: number, options?: ReadOptions): Promise<bigint>;
333
342
  /** O(log recordCount) probes. Onsets are monotonic; any observed violation is fatal. */
334
343
  locate(seconds: number, options?: ReadOptions): Promise<EdfLocation | undefined>;
package/dist/types.d.ts.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "edfcore",
3
- "version": "0.3.70",
3
+ "version": "0.3.72",
4
4
  "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
5
5
  "keywords": [
6
6
  "edf",
package/src/constants.ts CHANGED
@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
93
93
  } as const;
94
94
 
95
95
  /** Published package version. Kept in sync with package.json by a test. */
96
- export const VERSION = '0.3.70';
96
+ export const VERSION = '0.3.72';
package/src/header/signals.ts CHANGED
@@ -237,6 +237,7 @@ function parseSamplesPerRecord(
237
237
  function checkDigitalRangeFitsFormat(
238
238
  input: SignalHeaderInput,
239
239
  signalIndex: number,
240
+ kind: EdfSignal['kind'],
240
241
  digitalMinimum: number,
241
242
  digitalMaximum: number,
242
243
  raw: EdfRawSignalFields,
@@ -257,8 +258,17 @@ function checkDigitalRangeFitsFormat(
257
258
  `${signalFieldOffset('digitalMaximum', input.signalCount, signalIndex)}), but a ` +
258
259
  `${input.variant.family} sample is ${input.variant.bytesPerSample * 8}-bit two's ` +
259
260
  `complement and can only hold ${low}..${high}. ${DIGITAL_RANGE_SPEC_REFERENCE}. Next: ` +
260
- 'the declared range is used for scaling exactly as written — edfcore never clamps — so ' +
261
- 'expect physical values that extrapolate beyond the declared physical range.',
261
+ // The warning is worth making on any channel — a range outside the sample width is the
262
+ // BDF/EDF confusion this check exists for — but the consequence is not the same one. An
263
+ // annotations channel gets NO scale (the branch below skips `buildScale`), its bytes are
264
+ // TAL text, and `toPhysical` throws for it, so telling the reader to expect extrapolated
265
+ // physical values described a conversion that cannot happen (fixed in 0.3.72).
266
+ (kind === 'annotations'
267
+ ? 'nothing is scaled from these fields. An annotations signal carries TAL text rather ' +
268
+ 'than a measurement, so no scale is built for it and toPhysical() refuses it. The ' +
269
+ 'range is worth correcting because it says the writer confused the two sample widths.'
270
+ : 'the declared range is used for scaling exactly as written — edfcore never clamps — ' +
271
+ 'so expect physical values that extrapolate beyond the declared physical range.'),
262
272
  field: 'digitalMinimum',
263
273
  byteOffset,
264
274
  byteLength: SIGNAL_FIELD_WIDTHS.digitalMinimum,
@@ -449,7 +459,7 @@ export function parseSignalHeaders(
449
459
  sink,
450
460
  );
451
461
 
452
- checkDigitalRangeFitsFormat(input, index, digitalMinimum, digitalMaximum, raw, sink);
462
+ checkDigitalRangeFitsFormat(input, index, kind, digitalMinimum, digitalMaximum, raw, sink);
453
463
 
454
464
  let scale: EdfScale | undefined;
455
465
  if (kind === 'annotations') {
package/src/types.ts CHANGED
@@ -380,7 +380,16 @@ export interface EdfRecordIndex {
380
380
  * on this object may ever read as "continuous" when we have not checked. */
381
381
  readonly segments: readonly EdfSegment[] | undefined;
382
382
  readonly gaps: readonly EdfGap[] | undefined;
383
- /** One targeted read of that record's annotation region. Memoised. */
383
+ /**
384
+ * One read of that WHOLE data record — `header.recordByteLength` bytes. Memoised.
385
+ *
386
+ * Not the annotation region alone, which this said until 0.3.71. The unit of I/O in edfcore is
387
+ * the record, never the channel (decision 7), and `decodeAnnotations` owns the timekeeping rule
388
+ * and needs the record's full bytes to apply it. On a 64-channel file the region is 32 bytes of
389
+ * a 16,416-byte record, so "targeted" understated the read by 513x — and `locate()` issues
390
+ * O(log recordCount) of them, which is exactly the number a caller planning HTTP range requests
391
+ * is reading this line to compute.
392
+ */
384
393
  onsetTicks(recordIndex: number, options?: ReadOptions): Promise<bigint>;
385
394
  /** O(log recordCount) probes. Onsets are monotonic; any observed violation is fatal. */
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  locate(seconds: number, options?: ReadOptions): Promise<EdfLocation | undefined>;