edfcore 0.3.52 → 0.3.54
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +31 -0
- package/README.md +1 -1
- package/dist/biosemi.d.ts +2 -1
- package/dist/biosemi.d.ts.map +1 -1
- package/dist/biosemi.js +27 -4
- package/dist/biosemi.js.map +1 -1
- package/dist/constants.d.ts +1 -1
- package/dist/constants.js +1 -1
- package/dist/types.d.ts +3 -0
- package/dist/types.d.ts.map +1 -1
- package/package.json +1 -1
- package/src/biosemi.ts +27 -4
- package/src/constants.ts +1 -1
- package/src/types.ts +3 -0
package/CHANGELOG.md
CHANGED
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@@ -6,6 +6,37 @@ alone does not tell you whether you were affected.
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edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
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defect; those are called out below.
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## 0.3.54
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- **Fixed** `decodeStatusWord` reading the BioSemi quality flags from the wrong bits. Both
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`cmsInRange` and `batteryLow` were wrong, in both directions, on every ActiveTwo file.
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- BioSemi's Status word ("Trigger signals", biosemi.com; the same table is in BIOSIG/FieldTrip's
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`read_biosemi_bdf`) is: bits 0–15 the parallel trigger inputs, 16 new epoch, **17–19 speed bits
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0–2, 20 CMS in range, 21 speed bit 3, 22 battery low, 23 ActiveTwo MK2**.
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- edfcore used bit 17 for `cmsInRange` and bit 18 for `batteryLow` — the two bits directly above
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the trigger field, which are speed bits. So an amplifier with CMS genuinely in range reported
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`cmsInRange: false`, and a rig running at a speed mode with bit 0 set reported
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`cmsInRange: true` with the CMS bit clear. The two bits that carry the flags were never read.
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- `trigger` and `newEpoch` were always right, which is why this survived: the field an ERP
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pipeline actually uses is the low 16 bits, and it never moved.
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- The module comment had it backwards. It said "inventing meanings for the bits above 18 would be
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guessing" — but 20, 22 and 23 are precisely the documented ones and 17 and 18 are the guess. The
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full layout is now written out beside the constants, and `api-helpers.md` carries it as a table.
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The speed field and the MK2 flag stay unnamed and reachable through `raw`, which is the rule the
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module always stated.
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## 0.3.53
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- **Fixed** the README status line, which said **"Status: 0.1.x, early"** — through fifty-one
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releases and two minor versions. It is the first thing a reader sees on npm, and it named a
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series nobody could install.
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- `tests/integration/readme-status.test.ts` reads the series back out of the line and compares it
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with `package.json`, which changes on its own every release. The line cannot go stale again
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without failing the suite.
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- The "1,200+ tests" in the same sentence is left as written. It is a floor and it is still true —
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the suite runs 1,772 — and raising it to a number no test can verify would reintroduce exactly
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the kind of unchecked claim this release is about.
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+
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## 0.3.52
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- **Documented** `-v`. `parseArgs` has accepted it as an alias for `--version` for as long as it has
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package/README.md
CHANGED
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@@ -72,7 +72,7 @@ for (const event of annotations) {
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}
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```
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> **Status: 0.
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> **Status: 0.3.x, early.** edfcore runs 1,200+ tests on generated fixtures, and it's checked
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> against public corpora it didn't author: the EDF, EDF+ and 24-bit BDF+ test files from
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> teuniz.net, and PhysioNet's sleep-edfx (a real 22-hour polysomnography recording and its
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> sleep-staging file). Those checks are numeric. Channels labelled `sine 8.5 Hz` decode to
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package/dist/biosemi.d.ts
CHANGED
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@@ -12,7 +12,8 @@
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*
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* Only the bits BioSemi documents are named. `raw` carries all 24 so a caller with a rig-specific
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* convention can decode the rest without waiting for this module to learn about it — inventing
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* meanings for the
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* meanings for the undocumented ones would be guessing, and a wrong trigger code is worse than
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* none.
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*/
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import type { EdfHeader, EdfRecording, EdfSignal, EdfStatusWord, EdfTriggerEvent, ReadOptions, TriggerSelection } from './types.js';
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/**
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package/dist/biosemi.d.ts.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"file":"biosemi.d.ts","sourceRoot":"","sources":["../src/biosemi.ts"],"names":[],"mappings":"AAAA
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{"version":3,"file":"biosemi.d.ts","sourceRoot":"","sources":["../src/biosemi.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AAQH,OAAO,KAAK,EACV,SAAS,EACT,YAAY,EAEZ,SAAS,EACT,aAAa,EACb,eAAe,EACf,WAAW,EAEX,gBAAgB,EACjB,MAAM,YAAY,CAAC;AAiCpB;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,SAAS,GAAG,SAAS,GAAG,SAAS,CAOxE;AAED;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,MAAM,GAAG,aAAa,CAS9D;AAqBD;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAuCG;AACH,wBAAsB,YAAY,CAChC,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,gBAAgB,EAC3B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,eAAe,EAAE,CAAC,CA+GrC"}
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package/dist/biosemi.js
CHANGED
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@@ -12,7 +12,8 @@
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*
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* Only the bits BioSemi documents are named. `raw` carries all 24 so a caller with a rig-specific
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* convention can decode the rest without waiting for this module to learn about it — inventing
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* meanings for the
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* meanings for the undocumented ones would be guessing, and a wrong trigger code is worse than
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* none.
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*/
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import { decodeDigitalCounted } from './decode/digital.js';
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import { readRecordBytes } from './io/read.js';
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@@ -22,11 +23,33 @@ import { ceilDiv, secondsToTicks, ticksToSeconds } from './tal/ticks.js';
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import { resolveTimeWindow } from './time/window.js';
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/** BioSemi's own label for the channel. Matched case-insensitively after trimming. */
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const STATUS_LABEL = 'status';
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-
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/*
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* The Status word, as BioSemi assigns it ("Trigger signals", biosemi.com; the same table is in
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* BIOSIG/FieldTrip's `read_biosemi_bdf`):
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*
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* 0..15 the sixteen parallel trigger inputs
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* 16 high when a new epoch is started
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* 17 speed bit 0
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* 18 speed bit 1
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* 19 speed bit 2
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* 20 high when CMS is within range
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* 21 speed bit 3
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* 22 high when the battery is low
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* 23 high when the amplifier is an ActiveTwo MK2
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*
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* The flags are NOT the two bits immediately above the trigger field. 17 and 18 are speed bits,
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* so until 0.3.54 `cmsInRange` reported speed bit 0 and `batteryLow` reported speed bit 1, and
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* the two bits that carry those flags were never read: an amplifier with CMS genuinely in range
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* reported `cmsInRange: false`, and a rig running at a speed mode with bit 0 set reported
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* `cmsInRange: true` with the CMS bit clear. `trigger` and `newEpoch` were always right.
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*
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* The speed field and the MK2 flag stay unnamed and reachable through `raw`, which is the rule
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* the module docblock states.
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*/
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const TRIGGER_MASK = 0xffff;
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const EPOCH_BIT = 1 << 16;
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const CMS_IN_RANGE_BIT = 1 <<
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const BATTERY_LOW_BIT = 1 <<
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const CMS_IN_RANGE_BIT = 1 << 20;
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const BATTERY_LOW_BIT = 1 << 22;
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/**
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* The `Status` channel of a BDF file, or `undefined` when there is none.
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*
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package/dist/biosemi.js.map
CHANGED
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@@ -1 +1 @@
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{"version":3,"file":"biosemi.js","sourceRoot":"","sources":["../src/biosemi.ts"],"names":[],"mappings":"AAAA
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{"version":3,"file":"biosemi.js","sourceRoot":"","sources":["../src/biosemi.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AAEH,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAC/C,OAAO,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AACrD,OAAO,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAC3C,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AACzE,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AAarD,sFAAsF;AACtF,MAAM,YAAY,GAAG,QAAQ,CAAC;AAE9B;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,MAAM,YAAY,GAAG,MAAM,CAAC;AAC5B,MAAM,SAAS,GAAG,CAAC,IAAI,EAAE,CAAC;AAC1B,MAAM,gBAAgB,GAAG,CAAC,IAAI,EAAE,CAAC;AACjC,MAAM,eAAe,GAAG,CAAC,IAAI,EAAE,CAAC;AAEhC;;;;;GAKG;AACH,MAAM,UAAU,eAAe,CAAC,MAAiB;IAC/C,IAAI,MAAM,CAAC,cAAc,KAAK,CAAC;QAAE,OAAO,SAAS,CAAC;IAClD,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,iBAAiB,EAAE,CAAC;QAC7C,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;QACrC,IAAI,MAAM,KAAK,SAAS,IAAI,MAAM,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,KAAK,YAAY;YAAE,OAAO,MAAM,CAAC;IAChG,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,gBAAgB,CAAC,MAAc;IAC7C,MAAM,GAAG,GAAG,MAAM,GAAG,QAAQ,CAAC;IAC9B,OAAO;QACL,GAAG;QACH,OAAO,EAAE,GAAG,GAAG,YAAY;QAC3B,QAAQ,EAAE,CAAC,GAAG,GAAG,SAAS,CAAC,KAAK,CAAC;QACjC,UAAU,EAAE,CAAC,GAAG,GAAG,gBAAgB,CAAC,KAAK,CAAC;QAC1C,UAAU,EAAE,CAAC,GAAG,GAAG,eAAe,CAAC,KAAK,CAAC;KAC1C,CAAC;AACJ,CAAC;AAED;;;;;;GAMG;AACH,SAAS,iBAAiB,CACxB,QAA2C,EAC3C,WAAmB;IAEnB,IAAI,QAAQ,KAAK,SAAS;QAAE,OAAO,SAAS,CAAC;IAC7C,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;QAC/B,MAAM,KAAK,GAAG,OAAO,CAAC,OAAO,CAAC,KAAK,CAAC;QACpC,IAAI,WAAW,IAAI,KAAK,IAAI,WAAW,GAAG,KAAK,GAAG,OAAO,CAAC,OAAO,CAAC,KAAK;YAAE,OAAO,OAAO,CAAC;IAC1F,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAuCG;AACH,MAAM,CAAC,KAAK,UAAU,YAAY,CAChC,SAAuB,EACvB,SAA2B,EAC3B,OAAqB;IAErB,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,SAAS,CAAC;IAE/C,MAAM,MAAM,GAAG,eAAe,CAAC,MAAM,CAAC,CAAC;IACvC,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;QACzB,MAAM,IAAI,UAAU,CAClB,yFAAyF;YACvF,8EAA8E;YAC9E,qCAAqC,CACxC,CAAC;IACJ,CAAC;IAED,MAAM,MAAM,GAAG,iBAAiB,CAC9B,QAAQ,EACR,SAAS,CAAC,KAAK,EACf,SAAS,CAAC,YAAY,EACtB,SAAS,CAAC,eAAe,CAC1B,CAAC;IAEF,MAAM,gBAAgB,GAAG,cAAc,CAAC,SAAS,CAAC,YAAY,CAAC,CAAC;IAChE,MAAM,cAAc,GAAG,gBAAgB,GAAG,cAAc,CAAC,SAAS,CAAC,eAAe,CAAC,CAAC;IACpF,MAAM,aAAa,GAAG,MAAM,CAAC,mBAAmB,CAAC;IACjD,MAAM,gBAAgB,GAAG,MAAM,CAAC,gBAAgB,CAAC;IAEjD,MAAM,MAAM,GAAsB,EAAE,CAAC;IAErC,KAAK,MAAM,OAAO,IAAI,MAAM,EAAE,CAAC;QAC7B,uFAAuF;QACvF,MAAM,OAAO,GAAG,iBAAiB,CAAC,SAAS,CAAC,KAAK,CAAC,QAAQ,EAAE,OAAO,CAAC,KAAK,CAAC,CAAC;QAC3E,yFAAyF;QACzF,4FAA4F;QAC5F,2FAA2F;QAC3F,0FAA0F;QAC1F,yDAAyD;QACzD,IAAI,QAA4B,CAAC;QACjC,6FAA6F;QAC7F,6EAA6E;QAC7E,IAAI,QAAQ,GAAG,KAAK,CAAC;QACrB,wFAAwF;QACxF,gDAAgD;QAChD,MAAM,aAAa,GAAG,SAAS,CAAC,SAAS,CAAC,KAAK,EAAE,OAAO,CAAC,KAAK,CAAC,CAAC;QAChE,MAAM,YAAY,GAAG,gBAAgB,CAAC,MAAM,EAAE,OAAO,EAAE,mBAAmB,CAAC,CAAC;QAC5E,IAAI,OAAO,GAAG,CAAC,CAAC;QAChB,IAAI,OAA+B,CAAC;QAEpC,OAAO,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,CAAC;YAC/B,MAAM,KAAK,GAAgB;gBACzB,KAAK,EAAE,OAAO,CAAC,KAAK,GAAG,OAAO;gBAC9B,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,YAAY,EAAE,OAAO,CAAC,KAAK,GAAG,OAAO,CAAC;aACvD,CAAC;YACF,MAAM,KAAK,GAAG,MAAM,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,CAAC,CAAC;YACpE,MAAM,OAAO,GAAG,oBAAoB,CAAC,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,CAAC,KAAK,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;YAC3F,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC;YAE1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;gBACxC,MAAM,WAAW,GAAG,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC;gBACpC,qFAAqF;gBACrF,uFAAuF;gBACvF,gFAAgF;gBAChF,MAAM,gBAAgB,GACpB,OAAO,KAAK,SAAS;oBACnB,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,GAAG,aAAa;oBACrC,CAAC,CAAC,OAAO,CAAC,UAAU,GAAG,MAAM,CAAC,WAAW,GAAG,OAAO,CAAC,OAAO,CAAC,KAAK,CAAC,GAAG,aAAa,CAAC;gBAEvF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,gBAAgB,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;oBAC7C,MAAM,IAAI,GAAG,gBAAgB,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,GAAG,gBAAgB,GAAG,CAAC,CAAW,CAAC,CAAC;oBACnF,MAAM,OAAO,GAAG,QAAQ,KAAK,SAAS,IAAI,IAAI,CAAC,OAAO,KAAK,QAAQ,CAAC;oBACpE,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC;oBAExB,sFAAsF;oBACtF,sFAAsF;oBACtF,oFAAoF;oBACpF,iFAAiF;oBACjF,gCAAgC;oBAChC,EAAE;oBACF,gFAAgF;oBAChF,uFAAuF;oBACvF,wFAAwF;oBACxF,kFAAkF;oBAClF,wFAAwF;oBACxF,oFAAoF;oBACpF,qBAAqB;oBACrB,EAAE;oBACF,+EAA+E;oBAC/E,MAAM,KAAK,GACT,aAAa,GAAG,EAAE,IAAI,gBAAgB,GAAG,CAAC;wBACxC,CAAC,CAAC,gBAAgB,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,aAAa,EAAE,MAAM,CAAC,gBAAgB,CAAC,CAAC;wBACjF,CAAC,CAAC,gBAAgB,CAAC;oBAEvB,IAAI,KAAK,GAAG,gBAAgB,IAAI,KAAK,IAAI,cAAc;wBAAE,SAAS;oBAClE,IAAI,QAAQ,IAAI,CAAC,OAAO;wBAAE,SAAS;oBACnC,MAAM,UAAU,GAAG,CAAC,QAAQ,CAAC;oBAC7B,QAAQ,GAAG,IAAI,CAAC;oBAEhB,MAAM,CAAC,IAAI,CAAC;wBACV,WAAW,EAAE,WAAW,GAAG,gBAAgB,GAAG,CAAC;wBAC/C,OAAO,EAAE,cAAc,CAAC,KAAK,CAAC;wBAC9B,KAAK;wBACL,OAAO,EAAE,IAAI,CAAC,OAAO;wBACrB,MAAM,EAAE,IAAI;wBACZ,oFAAoF;wBACpF,aAAa,EAAE,UAAU,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,SAAS;qBACtD,CAAC,CAAC;gBACL,CAAC;YACH,CAAC;YAED,OAAO,IAAI,KAAK,CAAC,KAAK,CAAC;QACzB,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;AAC/B,CAAC"}
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package/dist/constants.d.ts
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@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
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readonly reserved: 224;
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};
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/** Published package version. Kept in sync with package.json by a test. */
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export declare const VERSION = "0.3.
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export declare const VERSION = "0.3.54";
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//# sourceMappingURL=constants.d.ts.map
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package/dist/constants.js
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package/dist/types.d.ts
CHANGED
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@@ -470,8 +470,11 @@ export interface EdfStatusWord {
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readonly raw: number;
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/** The parallel trigger input: the low 16 bits. */
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readonly trigger: number;
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/** Bit 16. */
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readonly newEpoch: boolean;
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/** Bit 20 — NOT bit 17, which is speed bit 0. */
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readonly cmsInRange: boolean;
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/** Bit 22 — NOT bit 18, which is speed bit 1. */
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readonly batteryLow: boolean;
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}
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package/dist/types.d.ts.map
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1
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|
package/package.json
CHANGED
package/src/biosemi.ts
CHANGED
|
@@ -12,7 +12,8 @@
|
|
|
12
12
|
*
|
|
13
13
|
* Only the bits BioSemi documents are named. `raw` carries all 24 so a caller with a rig-specific
|
|
14
14
|
* convention can decode the rest without waiting for this module to learn about it — inventing
|
|
15
|
-
* meanings for the
|
|
15
|
+
* meanings for the undocumented ones would be guessing, and a wrong trigger code is worse than
|
|
16
|
+
* none.
|
|
16
17
|
*/
|
|
17
18
|
|
|
18
19
|
import { decodeDigitalCounted } from './decode/digital.js';
|
|
@@ -36,11 +37,33 @@ import type {
|
|
|
36
37
|
/** BioSemi's own label for the channel. Matched case-insensitively after trimming. */
|
|
37
38
|
const STATUS_LABEL = 'status';
|
|
38
39
|
|
|
39
|
-
|
|
40
|
+
/*
|
|
41
|
+
* The Status word, as BioSemi assigns it ("Trigger signals", biosemi.com; the same table is in
|
|
42
|
+
* BIOSIG/FieldTrip's `read_biosemi_bdf`):
|
|
43
|
+
*
|
|
44
|
+
* 0..15 the sixteen parallel trigger inputs
|
|
45
|
+
* 16 high when a new epoch is started
|
|
46
|
+
* 17 speed bit 0
|
|
47
|
+
* 18 speed bit 1
|
|
48
|
+
* 19 speed bit 2
|
|
49
|
+
* 20 high when CMS is within range
|
|
50
|
+
* 21 speed bit 3
|
|
51
|
+
* 22 high when the battery is low
|
|
52
|
+
* 23 high when the amplifier is an ActiveTwo MK2
|
|
53
|
+
*
|
|
54
|
+
* The flags are NOT the two bits immediately above the trigger field. 17 and 18 are speed bits,
|
|
55
|
+
* so until 0.3.54 `cmsInRange` reported speed bit 0 and `batteryLow` reported speed bit 1, and
|
|
56
|
+
* the two bits that carry those flags were never read: an amplifier with CMS genuinely in range
|
|
57
|
+
* reported `cmsInRange: false`, and a rig running at a speed mode with bit 0 set reported
|
|
58
|
+
* `cmsInRange: true` with the CMS bit clear. `trigger` and `newEpoch` were always right.
|
|
59
|
+
*
|
|
60
|
+
* The speed field and the MK2 flag stay unnamed and reachable through `raw`, which is the rule
|
|
61
|
+
* the module docblock states.
|
|
62
|
+
*/
|
|
40
63
|
const TRIGGER_MASK = 0xffff;
|
|
41
64
|
const EPOCH_BIT = 1 << 16;
|
|
42
|
-
const CMS_IN_RANGE_BIT = 1 <<
|
|
43
|
-
const BATTERY_LOW_BIT = 1 <<
|
|
65
|
+
const CMS_IN_RANGE_BIT = 1 << 20;
|
|
66
|
+
const BATTERY_LOW_BIT = 1 << 22;
|
|
44
67
|
|
|
45
68
|
/**
|
|
46
69
|
* The `Status` channel of a BDF file, or `undefined` when there is none.
|
package/src/constants.ts
CHANGED
package/src/types.ts
CHANGED
|
@@ -539,8 +539,11 @@ export interface EdfStatusWord {
|
|
|
539
539
|
readonly raw: number;
|
|
540
540
|
/** The parallel trigger input: the low 16 bits. */
|
|
541
541
|
readonly trigger: number;
|
|
542
|
+
/** Bit 16. */
|
|
542
543
|
readonly newEpoch: boolean;
|
|
544
|
+
/** Bit 20 — NOT bit 17, which is speed bit 0. */
|
|
543
545
|
readonly cmsInRange: boolean;
|
|
546
|
+
/** Bit 22 — NOT bit 18, which is speed bit 1. */
|
|
544
547
|
readonly batteryLow: boolean;
|
|
545
548
|
}
|
|
546
549
|
|