npm - edfcore - Versions diffs - 0.3.32 → 0.3.34 - Mend

edfcore 0.3.32 → 0.3.34

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (13) hide show

package/CHANGELOG.md CHANGED Viewed

@@ -6,6 +6,46 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
+## 0.3.34
+- **Fixed** `validateHeader` reporting nothing about a starttime field the parse had refused. A
+  file with a good `dd.mm.yy` and a blank 8-byte starttime produced no timing diagnostic at all
+  from the sweep, so a caller concluded the header's timing fields were conformant while
+  `startTime.clock` held a substituted `00:00:00` the file never stated.
+- `validateHeader` is documented as independent of `header.diagnostics` — *"running both costs
+  nothing and neither can mask the other"* — so a caller who runs only the two-read, no-I/O path
+  both doc pages recommend is exactly the caller the docs sanction, and exactly the one who saw
+  nothing.
+- **This is a claim I made twice without making it true.** 0.3.17 rewrote `api-validate.md` and
+  `validation.md` to describe a `validateHeader` check for a refused clock, and 0.3.27 rewrote them
+  again for the split code — both times documenting a branch that was never added. Every other
+  consumer of `clockSource` already knew: `formatHeader` prints `unknown`, `formatStartTimeNaive`
+  returns `undefined`. Only the conformance sweep was blind.
+- It now emits `STARTTIME_UNPARSEABLE` with `field: 'startTime'` at byte 176, beside the
+  `DATE_UNPARSEABLE` branch it mirrors, saying what is true: the clock is a substituted midnight,
+  `clockSource` is `'none'`, and the calendar date and every elapsed time are unaffected.
+## 0.3.33
+**An overlap is not a gap, in the two places that still said it was.** 0.3.3 stated the rule while
+fixing `edfcore gaps` — *a gap is time no record covers; an overlap is one instant two records both
+claim* — and gave the CLI a fourth column. These two sites never got the same partition.
+- **`resolveTimeWindow`'s refusal.** It fires on `spanTicks !== coveredTicks`, which is a two-sided
+  test, and the message hardcoded the gap reading. On a file whose records overlap it produced
+  *"its 4 records span 3.5 s but cover only 4 s, so it contains at least one gap"* — arithmetic
+  nonsense, since 4 is not "only" anything beside 3.5, and a structural claim that is the opposite
+  of what the bytes say. The same file's open-time diagnostic already called it an overlap, so one
+  file produced two edfcore messages contradicting each other.
+- **`validateRecording`'s structural diagnostic.** It counted every entry of `index.gaps` as a gap,
+  and an overlap travels there with a NEGATIVE duration (0.2.69). A file with an overlap and no
+  hole anywhere was reported as having "1 gap(s) between them" — while the
+  `RECORD_ONSET_SPACING_VIOLATION` a few lines below in the same array correctly called the same
+  boundary an overlap.
+- Both now branch on the sign and say which they found; a report with one of each says so. Neither
+  refusal changes: a probed index still cannot map a window across either kind of discontinuity,
+  and the next step is still `buildRecordIndex`. A real hole is still called a gap.
 ## 0.3.32
 - **Fixed** `readTriggers` timestamping a Status sample by TRUNCATING to a whole tick, so an

package/dist/constants.d.ts CHANGED Viewed

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.3.32";
+export declare const VERSION = "0.3.34";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js CHANGED Viewed

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.32';
+export const VERSION = '0.3.34';
 //# sourceMappingURL=constants.js.map

package/dist/time/window.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/time/window.js CHANGED Viewed

@@ -100,9 +100,21 @@ export function resolveTimeWindow(timeline, index, startSeconds, durationSeconds
     // counts can round to the same one. On a long enough recording a real gap then vanished from
     // this comparison and the window was mapped on the nominal grid (fixed in 0.3.4).
     if (timeline.spanTicks !== timeline.coveredTicks) {
-        throw new RangeError(`resolveTimeWindow() cannot map seconds to records on this file: its ${recordCount} ` +
-            `records span ${timeline.spanSeconds} s but cover only ${timeline.coveredSeconds} s, so ` +
-            'it contains at least one gap, and a probed index knows where neither the gap nor the ' +
+        // The test is TWO-SIDED and the message used to name only one side. A span that exceeds the
+        // coverage is a gap; a coverage that exceeds the span means records OVERLAP, and saying
+        // "span 3.5 s but cover only 4 s, so it contains at least one gap" is both arithmetic
+        // nonsense — "only" for the larger number — and the opposite of what the bytes say. The same
+        // file's open-time diagnostic already calls it an overlap, so one file produced two edfcore
+        // messages that contradicted each other. 0.3.3 stated the rule for `edfcore gaps`: a gap is
+        // time no record covers; an overlap is one instant two records both claim (fixed in 0.3.33).
+        const overlapping = timeline.coveredTicks > timeline.spanTicks;
+        const shape = overlapping
+            ? `records covering ${timeline.coveredSeconds} s are packed into a ${timeline.spanSeconds} s ` +
+                'span, so at least one record starts before the previous one ends'
+            : `its ${recordCount} records span ${timeline.spanSeconds} s but cover only ` +
+                `${timeline.coveredSeconds} s, so it contains at least one gap`;
+        throw new RangeError(`resolveTimeWindow() cannot map seconds to records on this file: ${shape}, ` +
+            'and a probed index knows where neither the discontinuity nor the ' +
             'records after it start. ' +
             // The two seconds above can PRINT the same on a long recording, since that is exactly the
             // rounding this check stopped relying on. The ticks always differ here, so they are

package/dist/time/window.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/dist/validate.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"validate.d.ts","sourceRoot":"","sources":["../src/validate.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAcH,OAAO,KAAK,EAEV,aAAa,EAEb,SAAS,EAET,YAAY,EAIZ,eAAe,EACf,gBAAgB,EACjB,MAAM,YAAY,CAAC;AAEpB,OAAO,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAC;AAC5D;;;;;;;;;;;;GAYG;AACH,YAAY,EACV,aAAa,EACb,iBAAiB,EACjB,SAAS,EACT,cAAc,EACd,WAAW,EACX,SAAS,EACT,mBAAmB,EACnB,mBAAmB,EACnB,WAAW,EACX,eAAe,EACf,gBAAgB,GACjB,MAAM,YAAY,CAAC;~~AA0SpB~~;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,SAAS,GAAG,SAAS,aAAa,EAAE,CAe1E;~~AAsND~~;;;;;;;;;;;;;;;GAeG;AACH,wBAAsB,iBAAiB,CACrC,SAAS,EAAE,YAAY,EACvB,OAAO,CAAC,EAAE,eAAe,GACxB,OAAO,CAAC,gBAAgB,CAAC,CA+C3B"}
1	+ {"version":3,"file":"validate.d.ts","sourceRoot":"","sources":["../src/validate.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAcH,OAAO,KAAK,EAEV,aAAa,EAEb,SAAS,EAET,YAAY,EAIZ,eAAe,EACf,gBAAgB,EACjB,MAAM,YAAY,CAAC;AAEpB,OAAO,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAC;AAC5D;;;;;;;;;;;;GAYG;AACH,YAAY,EACV,aAAa,EACb,iBAAiB,EACjB,SAAS,EACT,cAAc,EACd,WAAW,EACX,SAAS,EACT,mBAAmB,EACnB,mBAAmB,EACnB,WAAW,EACX,eAAe,EACf,gBAAgB,GACjB,MAAM,YAAY,CAAC;AA8UpB;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,SAAS,GAAG,SAAS,aAAa,EAAE,CAe1E;AAmOD;;;;;;;;;;;;;;;GAeG;AACH,wBAAsB,iBAAiB,CACrC,SAAS,EAAE,YAAY,EACvB,OAAO,CAAC,EAAE,eAAe,GACxB,OAAO,CAAC,gBAAgB,CAAC,CA+C3B"}

package/dist/validate.js CHANGED Viewed

@@ -215,6 +215,38 @@ function checkDates(header, into) {
             specReference: 'EDF specification, header record bytes 168-175',
         }));
     }
+    /*
+     * The counterpart, and the check this sweep did not have.
+     *
+     * `validateHeader` is documented as independent of `header.diagnostics` — "running both costs
+     * nothing and neither can mask the other" — so a caller running only the two-read, no-I/O path
+     * both doc pages recommend saw NOTHING about a starttime field the parse had refused, and
+     * concluded the header's timing fields were conformant while `startTime.clock` held a
+     * substituted midnight the file never stated.
+     *
+     * 0.3.17 corrected the prose on two pages to describe this, and 0.3.27 rewrote it again for the
+     * split code — both times documenting a check that was never added. Every other consumer of
+     * `clockSource` already knows: `formatHeader` prints `unknown` and `formatStartTimeNaive`
+     * returns `undefined`. Only the conformance sweep was blind (fixed in 0.3.34).
+     */
+    if (startTime.clockSource === 'none') {
+        into.push(createDiagnostic({
+            code: 'STARTTIME_UNPARSEABLE',
+            message: `the starttime field is ${JSON.stringify(trimEdfField(header.raw.startTime))}, which ` +
+                'is not a clock time in hh.mm.ss form with hour 00..23, minute 00..59 and second ' +
+                '00..59. EDF specification, header record bytes 176-183. Next: startTime.clock reports ' +
+                '00:00:00 because the type admits no absent clock — startTime.clockSource is "none" ' +
+                'and formatStartTimeNaive() has nothing to return. The calendar date and every elapsed ' +
+                'time in the file are unaffected.',
+            field: 'startTime',
+            byteOffset: 176,
+            byteLength: 8,
+            raw: header.raw.startTime,
+            expected: 'hh.mm.ss',
+            actual: trimEdfField(header.raw.startTime),
+            specReference: 'EDF specification, header record bytes 176-183',
+        }));
+    }
     const headerDate = startTime.headerDate;
     const recordingIdDate = startTime.recordingIdDate;
     if (headerDate !== undefined &&
@@ -325,12 +357,24 @@ function usableIndex(index, recordCount) {
 }
 function reportStructure(header, segmentCount, gaps, into) {
     if (header.continuity === 'continuous' && segmentCount > 1) {
+        // Partitioned by sign, the way `edfcore gaps` was in 0.3.3. An overlap travels in this array
+        // with a NEGATIVE duration (0.2.69), so counting every entry as a gap told a reader that a
+        // file missing no data at all had one — while the RECORD_ONSET_SPACING_VIOLATION appended a
+        // few lines below correctly called the same boundary an overlap.
+        const holes = gaps.filter((gap) => gap.durationTicks > 0n).length;
+        const overlaps = gaps.length - holes;
+        const between = overlaps === 0
+            ? `${holes} gap(s) between them`
+            : holes === 0
+                ? `${overlaps} overlap(s) between them`
+                : `${holes} gap(s) and ${overlaps} overlap(s) between them`;
         into.push(createDiagnostic({
             code: 'DISCONTINUITY_IN_CONTINUOUS_FILE',
             message: `the reserved field marks this file continuous, but its record onsets fall into ` +
-                `${segmentCount} separate segments with ${gaps.length} gap(s) between them. Rule: in a ` +
+                `${segmentCount} separate segments with ${between}. Rule: in a ` +
                 'continuous file every record onset is startOffset + recordIndex * recordDuration; a ' +
-                'recording with gaps is what EDF+D exists for. Next: treat the file as discontinuous — ' +
+                'recording with gaps is what EDF+D exists for, and an overlap is sanctioned by ' +
+                'neither. Next: treat the file as discontinuous — ' +
                 'readWindow() returns one chunk per contiguous run once you pass it a complete index, ' +
                 'instead of crossing a gap silently.',
             field: 'timekeeping TAL',

package/dist/validate.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.3.32",
+  "version": "0.3.34",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/constants.ts CHANGED Viewed

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.32';
+export const VERSION = '0.3.34';

package/src/time/window.ts CHANGED Viewed

@@ -128,10 +128,22 @@ export function resolveTimeWindow(
   // counts can round to the same one. On a long enough recording a real gap then vanished from
   // this comparison and the window was mapped on the nominal grid (fixed in 0.3.4).
   if (timeline.spanTicks !== timeline.coveredTicks) {
+    // The test is TWO-SIDED and the message used to name only one side. A span that exceeds the
+    // coverage is a gap; a coverage that exceeds the span means records OVERLAP, and saying
+    // "span 3.5 s but cover only 4 s, so it contains at least one gap" is both arithmetic
+    // nonsense — "only" for the larger number — and the opposite of what the bytes say. The same
+    // file's open-time diagnostic already calls it an overlap, so one file produced two edfcore
+    // messages that contradicted each other. 0.3.3 stated the rule for `edfcore gaps`: a gap is
+    // time no record covers; an overlap is one instant two records both claim (fixed in 0.3.33).
+    const overlapping = timeline.coveredTicks > timeline.spanTicks;
+    const shape = overlapping
+      ? `records covering ${timeline.coveredSeconds} s are packed into a ${timeline.spanSeconds} s ` +
+        'span, so at least one record starts before the previous one ends'
+      : `its ${recordCount} records span ${timeline.spanSeconds} s but cover only ` +
+        `${timeline.coveredSeconds} s, so it contains at least one gap`;
     throw new RangeError(
-      `resolveTimeWindow() cannot map seconds to records on this file: its ${recordCount} ` +
-        `records span ${timeline.spanSeconds} s but cover only ${timeline.coveredSeconds} s, so ` +
-        'it contains at least one gap, and a probed index knows where neither the gap nor the ' +
+      `resolveTimeWindow() cannot map seconds to records on this file: ${shape}, ` +
+        'and a probed index knows where neither the discontinuity nor the ' +
         'records after it start. ' +
         // The two seconds above can PRINT the same on a long recording, since that is exactly the
         // rounding this check stopped relying on. The ticks always differ here, so they are

package/src/validate.ts CHANGED Viewed

@@ -291,6 +291,42 @@ function checkDates(header: EdfHeader, into: EdfDiagnostic[]): void {
     );
   }
+  /*
+   * The counterpart, and the check this sweep did not have.
+   *
+   * `validateHeader` is documented as independent of `header.diagnostics` — "running both costs
+   * nothing and neither can mask the other" — so a caller running only the two-read, no-I/O path
+   * both doc pages recommend saw NOTHING about a starttime field the parse had refused, and
+   * concluded the header's timing fields were conformant while `startTime.clock` held a
+   * substituted midnight the file never stated.
+   *
+   * 0.3.17 corrected the prose on two pages to describe this, and 0.3.27 rewrote it again for the
+   * split code — both times documenting a check that was never added. Every other consumer of
+   * `clockSource` already knows: `formatHeader` prints `unknown` and `formatStartTimeNaive`
+   * returns `undefined`. Only the conformance sweep was blind (fixed in 0.3.34).
+   */
+  if (startTime.clockSource === 'none') {
+    into.push(
+      createDiagnostic({
+        code: 'STARTTIME_UNPARSEABLE',
+        message:
+          `the starttime field is ${JSON.stringify(trimEdfField(header.raw.startTime))}, which ` +
+          'is not a clock time in hh.mm.ss form with hour 00..23, minute 00..59 and second ' +
+          '00..59. EDF specification, header record bytes 176-183. Next: startTime.clock reports ' +
+          '00:00:00 because the type admits no absent clock — startTime.clockSource is "none" ' +
+          'and formatStartTimeNaive() has nothing to return. The calendar date and every elapsed ' +
+          'time in the file are unaffected.',
+        field: 'startTime',
+        byteOffset: 176,
+        byteLength: 8,
+        raw: header.raw.startTime,
+        expected: 'hh.mm.ss',
+        actual: trimEdfField(header.raw.startTime),
+        specReference: 'EDF specification, header record bytes 176-183',
+      }),
+    );
+  }
   const headerDate = startTime.headerDate;
   const recordingIdDate = startTime.recordingIdDate;
   if (
@@ -432,14 +468,27 @@ function reportStructure(
   into: EdfDiagnostic[],
 ): void {
   if (header.continuity === 'continuous' && segmentCount > 1) {
+    // Partitioned by sign, the way `edfcore gaps` was in 0.3.3. An overlap travels in this array
+    // with a NEGATIVE duration (0.2.69), so counting every entry as a gap told a reader that a
+    // file missing no data at all had one — while the RECORD_ONSET_SPACING_VIOLATION appended a
+    // few lines below correctly called the same boundary an overlap.
+    const holes = gaps.filter((gap) => gap.durationTicks > 0n).length;
+    const overlaps = gaps.length - holes;
+    const between =
+      overlaps === 0
+        ? `${holes} gap(s) between them`
+        : holes === 0
+          ? `${overlaps} overlap(s) between them`
+          : `${holes} gap(s) and ${overlaps} overlap(s) between them`;
     into.push(
       createDiagnostic({
         code: 'DISCONTINUITY_IN_CONTINUOUS_FILE',
         message:
           `the reserved field marks this file continuous, but its record onsets fall into ` +
-          `${segmentCount} separate segments with ${gaps.length} gap(s) between them. Rule: in a ` +
+          `${segmentCount} separate segments with ${between}. Rule: in a ` +
           'continuous file every record onset is startOffset + recordIndex * recordDuration; a ' +
-          'recording with gaps is what EDF+D exists for. Next: treat the file as discontinuous — ' +
+          'recording with gaps is what EDF+D exists for, and an overlap is sanctioned by ' +
+          'neither. Next: treat the file as discontinuous — ' +
           'readWindow() returns one chunk per contiguous run once you pass it a complete index, ' +
           'instead of crossing a gap silently.',
         field: 'timekeeping TAL',