edfcore 0.3.27 → 0.3.29

package/CHANGELOG.md

@@ -6,6 +6,53 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
 
+## 0.3.29
+
+- **Fixed** a missing timekeeping TAL in **record 0** setting `startOffsetTicks` to zero, which
+  invented a discontinuity in a perfectly contiguous file. `spanTicks` then exceeded `coveredTicks`
+  by the start offset, `openEdf` reported `DISCONTINUITY_IN_CONTINUOUS_FILE`, `readWindow` refused
+  **every window in the file**, and `buildRecordIndex` reported two segments with a gap that does
+  not exist. `t = 0` also stopped being the start of record 0, so the whole axis shifted against
+  the identical file with its TAL intact.
+- **0.1.4 fixed exactly this for the LAST record** — "a missing TAL in the last record faked a
+  discontinuity and made readWindow refuse an entire conforming file" — by handing every later
+  probe record 0's onset as its origin. Record 0 is the one case that fix could not reach: it has
+  no origin to be handed, so its own derivation still fell back to zero.
+- The offset is now recovered from **record 1**: `onset(1) - recordDuration`. Adjacent records are
+  the weakest assumption available — only that one pair is contiguous. Deriving from the last
+  record instead would absorb every gap in the file into the offset and **hide** a real
+  discontinuity, which is worse than inventing one.
+- It costs one extra read, and only on a file that is already defective; a file whose record 0 is
+  fine still opens in exactly two probes, which is asserted. `TIMEKEEPING_TAL_MISSING` is still
+  reported — that defect is real. The invented one is gone.
+
+## 0.3.28
+
+**`buildRecordIndex` returned a different index — or a different fatal — for the same recording,
+depending on `maxMaterializeBytes`.** On a six-record EDF+D file whose record 4 has an unreadable
+timekeeping TAL, it built a two-segment index at some budgets and threw
+`TIMELINE_NOT_MONOTONIC` at others. Same file, same recording object; only the memory ceiling
+differed. `validateRecording` mirrored it, and `readRecords` reported two different `startTicks` for
+one record depending on how many neighbours shared the call.
+
+- `scanOnsets` states the invariant it broke, in so many words: *"The origin comes from the
+  recording, not from whatever this chunk happens to contain. Chunking is a memory-bounding detail
+  and must not change the answer."*
+- The grid origin for a record with no timekeeping TAL was derived as
+  `firstObserved.ticks - firstObserved.recordIndex * recordDuration` — **chunk-local whenever the
+  chunk contained any readable TAL.** On a discontinuous file `firstObserved` may be a post-gap
+  record, so that expression is record 0's start PLUS the gap. A supplied origin now outranks it,
+  the same precedence `resolveStartOffsetTicks` has always applied to the rebasing origin.
+- 0.3.14 and 0.3.15 fixed the two neighbouring instances: a range that observes nothing at all, and
+  the rebasing origin. Both stopped at the branch in front of them. **This is the third and last
+  place the origin was derived**, and it was the only one the chunked callers actually reach on the
+  files that have a gap.
+- The derivation is now the one `TIMEKEEPING_TAL_MISSING` promises in its own message —
+  `start + recordIndex * recordDuration` — at every chunk size. Where that lands before a
+  neighbour, the timeline genuinely is not monotonic and edfcore says so **every time** rather than
+  when the budget happens to make it visible. A contiguous file is unaffected: the derivation and
+  the supplied origin agree there, which is why this hid for so long.
+
 ## 0.3.27
 
 **`STARTTIME_UNPARSEABLE` is a new diagnostic code.** A refused clock no longer reports as

package/dist/constants.d.ts

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.3.27";
+export declare const VERSION = "0.3.29";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.27';
+export const VERSION = '0.3.29';
 //# sourceMappingURL=constants.js.map

package/dist/record-index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"record-index.d.ts","sourceRoot":"","sources":["../src/record-index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;GA0BG;AAeH,OAAO,KAAK,EACV,iBAAiB,EACjB,UAAU,EAGV,MAAM,EACN,SAAS,EAET,cAAc,EACd,YAAY,EACZ,UAAU,EACV,WAAW,EACX,WAAW,EAGZ,MAAM,YAAY,CAAC;AAWpB,8FAA8F;AAC9F,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,SAAS,EAAE,mBAAmB,CAAC,EAAE,MAAM,GAAG,MAAM,CAIxF;AAgLD;;;;;;;;;;GAUG;AACH,wBAAsB,aAAa,CACjC,MAAM,EAAE,UAAU,EAClB,MAAM,EAAE,SAAS,EACjB,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC;IAAE,QAAQ,EAAE,WAAW,CAAC;IAAC,KAAK,EAAE,cAAc,CAAA;CAAE,CAAC,CAkE3D;AAmDD;;;;;;;;;;GAUG;AACH,wBAAsB,gBAAgB,CACpC,SAAS,EAAE,YAAY,EACvB,OAAO,CAAC,EAAE,iBAAiB,GAC1B,OAAO,CAAC,cAAc,CAAC,CAyBzB;AAED;;;;;;;;;GASG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,cAAc,GAAG,YAAY,GAAG,eAAe,GAAG,SAAS,CAG9F;AAED;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,wBAAgB,SAAS,CAAC,KAAK,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,UAAU,GAAG,SAAS,CAgCxF;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,KAAK,CAAC,KAAK,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CA4BhF"}
+{"version":3,"file":"record-index.d.ts","sourceRoot":"","sources":["../src/record-index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;GA0BG;AAeH,OAAO,KAAK,EACV,iBAAiB,EACjB,UAAU,EAGV,MAAM,EACN,SAAS,EAET,cAAc,EACd,YAAY,EACZ,UAAU,EACV,WAAW,EACX,WAAW,EAGZ,MAAM,YAAY,CAAC;AAWpB,8FAA8F;AAC9F,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,SAAS,EAAE,mBAAmB,CAAC,EAAE,MAAM,GAAG,MAAM,CAIxF;AAqLD;;;;;;;;;;GAUG;AACH,wBAAsB,aAAa,CACjC,MAAM,EAAE,UAAU,EAClB,MAAM,EAAE,SAAS,EACjB,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC;IAAE,QAAQ,EAAE,WAAW,CAAC;IAAC,KAAK,EAAE,cAAc,CAAA;CAAE,CAAC,CA6F3D;AAmDD;;;;;;;;;;GAUG;AACH,wBAAsB,gBAAgB,CACpC,SAAS,EAAE,YAAY,EACvB,OAAO,CAAC,EAAE,iBAAiB,GAC1B,OAAO,CAAC,cAAc,CAAC,CAyBzB;AAED;;;;;;;;;GASG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,cAAc,GAAG,YAAY,GAAG,eAAe,GAAG,SAAS,CAG9F;AAED;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,wBAAgB,SAAS,CAAC,KAAK,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,UAAU,GAAG,SAAS,CAgCxF;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,KAAK,CAAC,KAAK,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CA4BhF"}

package/dist/record-index.js

@@ -63,6 +63,10 @@ function nominalOnsetTicks(header, recordIndex) {
     // was the one that did not.
     return saturateToInt64(BigInt(recordIndex) * header.recordDurationTicks);
 }
+/** Whether a probe found no timekeeping TAL at all, so its onset was derived rather than read. */
+function observedNoTimekeeping(diagnostics) {
+    return diagnostics.some((diagnostic) => diagnostic.code === 'TIMEKEEPING_TAL_MISSING');
+}
 /** True when the file stores per-record onsets, i.e. when probing can learn anything. */
 function hasTimekeeping(header) {
     return header.annotationSignalIndices.length > 0;
@@ -217,6 +221,32 @@ export async function buildTimeline(source, header, options) {
         memo.set(recordIndex, probe.ticks);
         appendDiagnostics(probeDiagnostics, probe.diagnostics);
         probes.push({ recordIndex, onsetTicks: probe.ticks });
+        /*
+         * RECORD 0 IS THE ONE THE COMMENT ABOVE CANNOT HELP.
+         *
+         * Every other probe is handed record 0's onset as its origin. Record 0 has no origin to be
+         * handed, so when ITS timekeeping TAL is missing the derivation falls back to zero — and
+         * `startOffsetTicks` becomes 0 rather than the recording's true sub-second start.
+         *
+         * The consequences are the ones 0.1.4 fixed for the LAST record, on a file that is perfectly
+         * contiguous: `spanTicks` exceeds `coveredTicks` by the start offset, `openEdf` reports
+         * DISCONTINUITY_IN_CONTINUOUS_FILE, `readWindow` refuses EVERY window in the file, and
+         * `buildRecordIndex` reports two segments with a gap that does not exist. `t = 0` also stops
+         * being the start of record 0, so the whole axis shifts against the identical file with its
+         * TAL intact (fixed in 0.3.29).
+         *
+         * Recovered from record 1, not from the last record: adjacent records are the weakest
+         * assumption available — only that ONE pair is contiguous — whereas deriving from the last
+         * record would absorb every gap in the file into the offset and hide a real discontinuity
+         * instead of inventing one. One extra read, and only on a file that is already defective.
+         */
+        if (recordIndex === 0 && recordCount > 1 && observedNoTimekeeping(probe.diagnostics)) {
+            const neighbour = await probeOnset(source, header, 1, probeOptions(options));
+            const recovered = saturateToInt64(neighbour.ticks - header.recordDurationTicks);
+            memo.set(0, recovered);
+            memo.set(1, neighbour.ticks);
+            probes[probes.length - 1] = { recordIndex: 0, onsetTicks: recovered };
+        }
     }
     const timeline = buildTimelineFromProbes({ header, probes, probeDiagnostics }, options);
     async function onsetOf(recordIndex, readOptions) {

package/dist/record-index.js.map

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package/dist/tal/annotations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAoVrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAmKtB"}
+{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAoVrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAsLtB"}

package/dist/tal/annotations.js

@@ -357,9 +357,28 @@ export function decodeAnnotations(header, recordBytes, records, options) {
     // public function documented to handle the origin for you was the one that did not, and a
     // record with no timekeeping TAL of its own moved by the start offset depending on how many
     // neighbours shared the call.
-    const baseTicks = firstObserved === undefined
-        ? (options?.originTicks ?? options?.startOffsetTicks ?? 0n)
-        : firstObserved.ticks - BigInt(firstObserved.recordIndex) * durationTicks;
+    // A SUPPLIED origin outranks the local derivation, the same precedence `resolveStartOffsetTicks`
+    // has always applied to the rebasing origin below. 0.3.14 only reached the branch where a range
+    // observes NOTHING; the derivation below is chunk-LOCAL whenever the chunk happens to contain
+    // any readable TAL, and on a discontinuous file `firstObserved` may be a post-gap record, so
+    // `observed - index * duration` is not record 0's start but record 0's start plus the gap.
+    //
+    // That made the answer a function of the memory budget. On a six-record EDF+D file whose record
+    // 4 has an unreadable timekeeping TAL, `buildRecordIndex` returned a two-segment index at some
+    // values of `maxMaterializeBytes` and threw a FATAL `TIMELINE_NOT_MONOTONIC` at others — same
+    // recording, same object. `scanOnsets` states the broken invariant verbatim: "The origin comes
+    // from the recording, not from whatever this chunk happens to contain. Chunking is a
+    // memory-bounding detail and must not change the answer." (fixed in 0.3.28)
+    //
+    // With an origin in hand the derivation is the one `TIMEKEEPING_TAL_MISSING` promises in its own
+    // message — `start + recordIndex * recordDuration` — whatever the chunk. On a file where that
+    // lands before a neighbour the timeline really is not monotonic, and it now says so every time
+    // rather than depending on how much memory the caller allowed.
+    const suppliedOrigin = options?.originTicks ?? options?.startOffsetTicks;
+    const baseTicks = suppliedOrigin ??
+        (firstObserved === undefined
+            ? 0n
+            : firstObserved.ticks - BigInt(firstObserved.recordIndex) * durationTicks);
     const recordOnsetTicks = new BigInt64Array(records.count);
     for (let position = 0; position < records.count; position += 1) {
         const observed = observedOnsets[position];

package/dist/tal/annotations.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.3.27",
+  "version": "0.3.29",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/constants.ts

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.27';
+export const VERSION = '0.3.29';

package/src/record-index.ts

@@ -88,6 +88,11 @@ function nominalOnsetTicks(header: EdfHeader, recordIndex: number): bigint {
   return saturateToInt64(BigInt(recordIndex) * header.recordDurationTicks);
 }
 
+/** Whether a probe found no timekeeping TAL at all, so its onset was derived rather than read. */
+function observedNoTimekeeping(diagnostics: readonly EdfDiagnostic[]): boolean {
+  return diagnostics.some((diagnostic) => diagnostic.code === 'TIMEKEEPING_TAL_MISSING');
+}
+
 /** True when the file stores per-record onsets, i.e. when probing can learn anything. */
 function hasTimekeeping(header: EdfHeader): boolean {
   return header.annotationSignalIndices.length > 0;
@@ -294,6 +299,33 @@ export async function buildTimeline(
     memo.set(recordIndex, probe.ticks);
     appendDiagnostics(probeDiagnostics, probe.diagnostics);
     probes.push({ recordIndex, onsetTicks: probe.ticks });
+
+    /*
+     * RECORD 0 IS THE ONE THE COMMENT ABOVE CANNOT HELP.
+     *
+     * Every other probe is handed record 0's onset as its origin. Record 0 has no origin to be
+     * handed, so when ITS timekeeping TAL is missing the derivation falls back to zero — and
+     * `startOffsetTicks` becomes 0 rather than the recording's true sub-second start.
+     *
+     * The consequences are the ones 0.1.4 fixed for the LAST record, on a file that is perfectly
+     * contiguous: `spanTicks` exceeds `coveredTicks` by the start offset, `openEdf` reports
+     * DISCONTINUITY_IN_CONTINUOUS_FILE, `readWindow` refuses EVERY window in the file, and
+     * `buildRecordIndex` reports two segments with a gap that does not exist. `t = 0` also stops
+     * being the start of record 0, so the whole axis shifts against the identical file with its
+     * TAL intact (fixed in 0.3.29).
+     *
+     * Recovered from record 1, not from the last record: adjacent records are the weakest
+     * assumption available — only that ONE pair is contiguous — whereas deriving from the last
+     * record would absorb every gap in the file into the offset and hide a real discontinuity
+     * instead of inventing one. One extra read, and only on a file that is already defective.
+     */
+    if (recordIndex === 0 && recordCount > 1 && observedNoTimekeeping(probe.diagnostics)) {
+      const neighbour = await probeOnset(source, header, 1, probeOptions(options));
+      const recovered = saturateToInt64(neighbour.ticks - header.recordDurationTicks);
+      memo.set(0, recovered);
+      memo.set(1, neighbour.ticks);
+      probes[probes.length - 1] = { recordIndex: 0, onsetTicks: recovered };
+    }
   }
 
   const timeline = buildTimelineFromProbes({ header, probes, probeDiagnostics }, options);

package/src/tal/annotations.ts

@@ -495,10 +495,29 @@ export function decodeAnnotations(
   // public function documented to handle the origin for you was the one that did not, and a
   // record with no timekeeping TAL of its own moved by the start offset depending on how many
   // neighbours shared the call.
+  // A SUPPLIED origin outranks the local derivation, the same precedence `resolveStartOffsetTicks`
+  // has always applied to the rebasing origin below. 0.3.14 only reached the branch where a range
+  // observes NOTHING; the derivation below is chunk-LOCAL whenever the chunk happens to contain
+  // any readable TAL, and on a discontinuous file `firstObserved` may be a post-gap record, so
+  // `observed - index * duration` is not record 0's start but record 0's start plus the gap.
+  //
+  // That made the answer a function of the memory budget. On a six-record EDF+D file whose record
+  // 4 has an unreadable timekeeping TAL, `buildRecordIndex` returned a two-segment index at some
+  // values of `maxMaterializeBytes` and threw a FATAL `TIMELINE_NOT_MONOTONIC` at others — same
+  // recording, same object. `scanOnsets` states the broken invariant verbatim: "The origin comes
+  // from the recording, not from whatever this chunk happens to contain. Chunking is a
+  // memory-bounding detail and must not change the answer." (fixed in 0.3.28)
+  //
+  // With an origin in hand the derivation is the one `TIMEKEEPING_TAL_MISSING` promises in its own
+  // message — `start + recordIndex * recordDuration` — whatever the chunk. On a file where that
+  // lands before a neighbour the timeline really is not monotonic, and it now says so every time
+  // rather than depending on how much memory the caller allowed.
+  const suppliedOrigin = options?.originTicks ?? options?.startOffsetTicks;
   const baseTicks =
-    firstObserved === undefined
-      ? (options?.originTicks ?? options?.startOffsetTicks ?? 0n)
-      : firstObserved.ticks - BigInt(firstObserved.recordIndex) * durationTicks;
+    suppliedOrigin ??
+    (firstObserved === undefined
+      ? 0n
+      : firstObserved.ticks - BigInt(firstObserved.recordIndex) * durationTicks);
 
   const recordOnsetTicks = new BigInt64Array(records.count);
   for (let position = 0; position < records.count; position += 1) {