edfcore 0.3.2 → 0.3.3

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Files changed (9) hide show
  1. package/CHANGELOG.md +18 -0
  2. package/dist/cli-run.d.ts.map +1 -1
  3. package/dist/cli-run.js +19 -2
  4. package/dist/cli-run.js.map +1 -1
  5. package/dist/constants.d.ts +1 -1
  6. package/dist/constants.js +1 -1
  7. package/package.json +1 -1
  8. package/src/cli-run.ts +22 -2
  9. package/src/constants.ts +1 -1
package/CHANGELOG.md CHANGED
@@ -6,6 +6,24 @@ alone does not tell you whether you were affected.
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  edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
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  defect; those are called out below.
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+ ## 0.3.3
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+
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+ - **Fixed** `edfcore gaps` counting an overlap as a gap. An overlap travels in `index.gaps` with a
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+ NEGATIVE duration — 0.2.69 documented that and pinned it — and this command called every entry a
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+ gap, so a file with one gap and one overlap printed `2 gap(s) in 6 records`. Someone sweeping a
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+ directory for discontinuities got a count that silently included the opposite condition. A gap is
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+ time no record covers; an overlap is one instant two records both claim.
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+ - **Fixed** the duration printing as `+-1s`. The `+` was hardcoded on the assumption that a gap
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+ duration is never negative. The value now carries its own sign.
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+ - The kind — `gap` or `overlap` — is a fourth column, APPENDED, so `cut -f3` still reads a
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+ duration and no existing column moves. The same rule 0.2.42 followed when `signals` gained
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+ `samplesPerRecord`.
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+ - The interval still prints as the gap reports it, which for an overlap runs backwards
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+ (`3s..2s`): from where the earlier segment ends to where the later one had already started. With
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+ the kind named beside it, that reads as what it is instead of as a corrupt line.
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+ - Exit code unchanged at 0. This command reports and does not gate; `edfcore validate` is the gate
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+ and already exits 1 on an overlap through `RECORD_ONSET_SPACING_VIOLATION`.
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+
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  ## 0.3.2
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  **No output edfcore produces can be given a row, a column or a diagnostic by the file it is
package/dist/cli-run.d.ts.map CHANGED
@@ -1 +1 @@
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+ {"version":3,"file":"cli-run.d.ts","sourceRoot":"","sources":["../src/cli-run.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAaH;;;;;;;;;;;GAWG;AACH,qBAAa,aAAc,SAAQ,UAAU;IAC3C,QAAQ,CAAC,KAAK,EAAG,IAAI,CAAU;gBAEnB,OAAO,EAAE,MAAM;CAI5B;AAED,iDAAiD;AACjD,MAAM,WAAW,KAAK;IACpB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;IAC5C,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AAsBD,MAAM,WAAW,IAAI;IACnB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IAClC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;CACpC;AAED,wBAAgB,SAAS,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,CAkDvD;AAwBD,wBAAsB,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CAsMnE"}
package/dist/cli-run.js CHANGED
@@ -218,10 +218,27 @@ export async function runCli(args, io) {
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  io.out(`no gaps in ${index.recordCount} records\n`);
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  return 0;
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  }
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- io.out(`${gaps.length} gap(s) in ${index.recordCount} records\n\n`);
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+ // An OVERLAP travels in the same array with a negative duration — 0.2.69 documented that —
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+ // and until 0.3.3 this command called every entry a gap and printed its duration with a
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+ // hardcoded `+`, so an overlap came out as `+-1s` inside a line reading "2 gap(s)". A
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+ // directory sweep counting gaps counted overlaps among them, which is the opposite claim:
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+ // a gap is time no record covers, an overlap is one instant two records both claim.
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+ const overlaps = gaps.filter((gap) => gap.durationSeconds < 0).length;
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+ const counted = overlaps === 0
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+ ? `${gaps.length} gap(s)`
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+ : `${gaps.length - overlaps} gap(s) and ${overlaps} overlap(s)`;
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+ io.out(`${counted} in ${index.recordCount} records\n\n`);
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  for (const gap of gaps) {
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- io.out(`after segment ${gap.beforeSegmentIndex}\t${gap.startSeconds}s..${gap.endSeconds}s\t+${gap.durationSeconds}s\n`);
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+ const overlap = gap.durationSeconds < 0;
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+ // The kind is a FOURTH column, appended: columns 1-3 keep their meaning and position, so
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+ // an existing `cut -f3` still reads a duration. The duration carries its own sign, and
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+ // the interval is printed as the gap reports it — for an overlap it runs backwards,
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+ // from where the earlier segment ends to where the later one already started.
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+ io.out(`after segment ${gap.beforeSegmentIndex}\t${gap.startSeconds}s..${gap.endSeconds}s\t` +
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+ `${gap.durationSeconds}s\t${overlap ? 'overlap' : 'gap'}\n`);
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  }
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+ // Exit 0 either way: this command reports, it does not gate. `edfcore validate` is the gate,
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+ // and it already exits 1 on an overlap through RECORD_ONSET_SPACING_VIOLATION.
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  return 0;
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  }
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  case 'signals': {
package/dist/cli-run.js.map CHANGED
@@ -1 +1 @@
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package/dist/constants.d.ts CHANGED
@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
109
109
  readonly reserved: 224;
110
110
  };
111
111
  /** Published package version. Kept in sync with package.json by a test. */
112
- export declare const VERSION = "0.3.2";
112
+ export declare const VERSION = "0.3.3";
113
113
  //# sourceMappingURL=constants.d.ts.map
package/dist/constants.js CHANGED
@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
79
79
  reserved: 224,
80
80
  };
81
81
  /** Published package version. Kept in sync with package.json by a test. */
82
- export const VERSION = '0.3.2';
82
+ export const VERSION = '0.3.3';
83
83
  //# sourceMappingURL=constants.js.map
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "edfcore",
3
- "version": "0.3.2",
3
+ "version": "0.3.3",
4
4
  "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
5
5
  "keywords": [
6
6
  "edf",
package/src/cli-run.ts CHANGED
@@ -257,12 +257,32 @@ export async function runCli(args: Args, io: CliIo): Promise<number> {
257
257
  io.out(`no gaps in ${index.recordCount} records\n`);
258
258
  return 0;
259
259
  }
260
- io.out(`${gaps.length} gap(s) in ${index.recordCount} records\n\n`);
260
+
261
+ // An OVERLAP travels in the same array with a negative duration — 0.2.69 documented that —
262
+ // and until 0.3.3 this command called every entry a gap and printed its duration with a
263
+ // hardcoded `+`, so an overlap came out as `+-1s` inside a line reading "2 gap(s)". A
264
+ // directory sweep counting gaps counted overlaps among them, which is the opposite claim:
265
+ // a gap is time no record covers, an overlap is one instant two records both claim.
266
+ const overlaps = gaps.filter((gap) => gap.durationSeconds < 0).length;
267
+ const counted =
268
+ overlaps === 0
269
+ ? `${gaps.length} gap(s)`
270
+ : `${gaps.length - overlaps} gap(s) and ${overlaps} overlap(s)`;
271
+ io.out(`${counted} in ${index.recordCount} records\n\n`);
272
+
261
273
  for (const gap of gaps) {
274
+ const overlap = gap.durationSeconds < 0;
275
+ // The kind is a FOURTH column, appended: columns 1-3 keep their meaning and position, so
276
+ // an existing `cut -f3` still reads a duration. The duration carries its own sign, and
277
+ // the interval is printed as the gap reports it — for an overlap it runs backwards,
278
+ // from where the earlier segment ends to where the later one already started.
262
279
  io.out(
263
- `after segment ${gap.beforeSegmentIndex}\t${gap.startSeconds}s..${gap.endSeconds}s\t+${gap.durationSeconds}s\n`,
280
+ `after segment ${gap.beforeSegmentIndex}\t${gap.startSeconds}s..${gap.endSeconds}s\t` +
281
+ `${gap.durationSeconds}s\t${overlap ? 'overlap' : 'gap'}\n`,
264
282
  );
265
283
  }
284
+ // Exit 0 either way: this command reports, it does not gate. `edfcore validate` is the gate,
285
+ // and it already exits 1 on an overlap through RECORD_ONSET_SPACING_VIOLATION.
266
286
  return 0;
267
287
  }
268
288
 
package/src/constants.ts CHANGED
@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
93
93
  } as const;
94
94
 
95
95
  /** Published package version. Kept in sync with package.json by a test. */
96
- export const VERSION = '0.3.2';
96
+ export const VERSION = '0.3.3';