edfcore 0.3.15 → 0.3.17

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Files changed (16) hide show
  1. package/CHANGELOG.md +41 -0
  2. package/dist/constants.d.ts +1 -1
  3. package/dist/constants.js +1 -1
  4. package/dist/format-header.d.ts.map +1 -1
  5. package/dist/format-header.js +19 -5
  6. package/dist/format-header.js.map +1 -1
  7. package/dist/header/dates.d.ts.map +1 -1
  8. package/dist/header/dates.js +8 -0
  9. package/dist/header/dates.js.map +1 -1
  10. package/dist/types.d.ts +15 -0
  11. package/dist/types.d.ts.map +1 -1
  12. package/package.json +1 -1
  13. package/src/constants.ts +1 -1
  14. package/src/format-header.ts +20 -7
  15. package/src/header/dates.ts +7 -0
  16. package/src/types.ts +15 -0
package/CHANGELOG.md CHANGED
@@ -6,6 +6,47 @@ alone does not tell you whether you were affected.
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  edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
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  defect; those are called out below.
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+ ## 0.3.17
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+
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+ **`formatHeader` printed `00:00:00` for a starttime the file never stated.** The module's own
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+ promise, two paragraphs into the file and repeated in the published docs, is that a field edfcore
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+ could not resolve prints as `unknown` rather than as a plausible default. The date half honoured it
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+ and was pinned by a test. The clock half did not.
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+
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+ - A blank starttime field, a `23.59.60`, and a file that genuinely started at midnight all rendered
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+ the identical line `start 2019-03-11 00:00:00 (local, no timezone)`. Midnight is the most
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+ believable start there is for a sleep study, so nothing in the string was a cue — in the one
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+ output this package exists to have pasted into a bug report.
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+ - **Added** `EdfStartTime.clockSource: 'headerField' | 'none'`, the counterpart of the existing
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+ `dateSource`. `EdfClockTime` admits no absent clock, so `clock` is still a substituted midnight;
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+ this is how to tell that from a real one, and library consumers get the same signal `formatHeader`
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+ now uses.
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+ - **Changed** `formatStartTimeNaive` to return `undefined` when the clock was refused, as it
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+ already did for a refused date. It was returning `2019-03-11T00:00:00.000` for a file whose
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+ starttime field says `23.59.60` — a wall-clock instant nothing in the file supports, from the one
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+ function whose entire job is to report that instant. `api-errors.md` already told readers this
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+ was the behaviour; now it is.
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+ - **Corrected three published claims about `DATE_UNPARSEABLE`.** It is emitted for a refused
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+ startdate AND for a refused starttime, and `diagnostic.field` says which. The docs described only
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+ the first: `validation.md` said it "means the file has no calendar date at all", `api-validate.md`
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+ mapped it to `dateSource === 'none'`, and `api-errors.md` said `startTime.clock` "is still exact"
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+ under it — which is exactly false in the case that motivated this release.
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+
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+ ## 0.3.16
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+
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+ - **Fixed** `formatHeader` printing the patient and recording identification fields raw under
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+ `includePatientId`, so a file could forge lines in the summary describing it. Both are 80
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+ arbitrary bytes. A newline in the patient field opened a row matching the signal table's shape
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+ exactly — ` 0 99 signals · 0 records` — and one in the recording field forged
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+ `record 9 s` at the left margin, contradicting the real geometry three lines above it.
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+ - **0.3.2 swept this class through five outputs and missed these two.** Both lines are off by
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+ default, so nothing exercised them: the test written for that release built a hostile file and
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+ never asked for the fields that are hidden unless requested. The case now lives in
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+ `tests/unit/hostile-text.test.ts` beside the rest of the class, which is where the next one
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+ should be found rather than discovered.
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+ - Control characters are replaced with `.`, exactly as for every other field. `header.patient.raw`
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+ and `header.recording.raw` still hold the bytes as written.
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+
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  ## 0.3.15
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  - **Fixed** `validateRecording` reporting a different set of diagnostics depending on how large its
package/dist/constants.d.ts CHANGED
@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
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  readonly reserved: 224;
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export declare const VERSION = "0.3.15";
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+ export declare const VERSION = "0.3.17";
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  //# sourceMappingURL=constants.d.ts.map
package/dist/constants.js CHANGED
@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
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  reserved: 224,
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export const VERSION = '0.3.15';
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+ export const VERSION = '0.3.17';
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  //# sourceMappingURL=constants.js.map
package/dist/format-header.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"format-header.d.ts","sourceRoot":"","sources":["../src/format-header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAKH,OAAO,KAAK,EAAmB,SAAS,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAgClF;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,CAAC,EAAE,mBAAmB,GAAG,MAAM,CAoFrF"}
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+ {"version":3,"file":"format-header.d.ts","sourceRoot":"","sources":["../src/format-header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAKH,OAAO,KAAK,EAAmB,SAAS,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAgClF;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,CAAC,EAAE,mBAAmB,GAAG,MAAM,CAiGrF"}
package/dist/format-header.js CHANGED
@@ -54,9 +54,17 @@ export function formatHeader(header, options) {
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  const lines = [];
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  const start = header.startTime;
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  lines.push(`${header.variant} · ${header.signals.length} signals · ${header.recordCount} records`);
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- lines.push(`start ${formatDate(start.resolvedDate)} ${String(start.clock.hour).padStart(2, '0')}:` +
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- `${String(start.clock.minute).padStart(2, '0')}:${String(start.clock.second).padStart(2, '0')}` +
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- ` (local, no timezone)`);
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+ // `unknown`, not a substituted midnight. The module promise two paragraphs up is that a field
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+ // edfcore could not resolve prints as `unknown` rather than as a plausible default, and the date
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+ // half has always honoured it. The clock half printed `00:00:00` for a starttime field that
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+ // failed its grammar — byte-identical to a file that genuinely started at midnight, which for a
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+ // sleep study is the most believable start there is (fixed in 0.3.17).
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+ const clock = start.clockSource === 'none'
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+ ? 'unknown'
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+ : `${String(start.clock.hour).padStart(2, '0')}:` +
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+ `${String(start.clock.minute).padStart(2, '0')}:` +
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+ `${String(start.clock.second).padStart(2, '0')}`;
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+ lines.push(`start ${formatDate(start.resolvedDate)} ${clock} (local, no timezone)`);
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  lines.push(`record ${header.recordDurationSeconds} s · ${header.recordByteLength} bytes · ` +
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  `${header.bytesPerSample} bytes/sample`);
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  // "duration" is only honest for a file whose records run end to end. On an EDF+D file this
@@ -80,8 +88,14 @@ export function formatHeader(header, options) {
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  lines.push(' record count recovered from the source length');
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  }
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  if (options?.includePatientId === true) {
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- lines.push(`patient ${header.patient.raw.trim() || 'unknown'}`);
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- lines.push(`recording ${header.recording.raw.trim() || 'unknown'}`);
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+ // Through `printable`, for the reason every other field here is: these are 80 arbitrary bytes
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+ // each. 0.3.2 fixed this class in five outputs and missed these two, because the lines are off
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+ // by default and no test asked for them. A newline in the patient field opened a row matching
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+ // the signal-table shape exactly — ` 0 99 signals · 0 records` — and one in the recording
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+ // field forged a `record 9 s` line at the left margin, contradicting the real geometry
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+ // three lines above it (fixed in 0.3.16).
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+ lines.push(`patient ${printable(header.patient.raw.trim()) || 'unknown'}`);
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+ lines.push(`recording ${printable(header.recording.raw.trim()) || 'unknown'}`);
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  }
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  lines.push('');
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  lines.push(' # label kind rate range');
package/dist/format-header.js.map CHANGED
@@ -1 +1 @@
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+ {"version":3,"file":"dates.d.ts","sourceRoot":"","sources":["../../src/header/dates.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAIH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAClE,OAAO,KAAK,EAAE,eAAe,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAmD/E,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAEhD;AAED,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,CAG/D;AAQD,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,eAAe,GAAG,OAAO,CAKlE;AAED,wBAAgB,kBAAkB,CAAC,CAAC,EAAE,eAAe,EAAE,CAAC,EAAE,eAAe,GAAG,OAAO,CAElF;AAED,iFAAiF;AACjF,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,eAAe,GAAG,MAAM,CAEhE;AAED,oBAAoB;AACpB,wBAAgB,eAAe,CAAC,KAAK,EAAE,YAAY,GAAG,MAAM,CAE3D;AAgCD,wBAAgB,mBAAmB,CAAC,YAAY,EAAE,MAAM,GAAG,MAAM,CAIhE;AAED;;;GAGG;AACH,MAAM,MAAM,qBAAqB,GAAG,QAAQ,GAAG,YAAY,GAAG,aAAa,CAAC;AAE5E,MAAM,WAAW,oBAAoB;IACnC,QAAQ,CAAC,MAAM,EAAE,qBAAqB,CAAC;IACvC,+CAA+C;IAC/C,QAAQ,CAAC,IAAI,EAAE,eAAe,GAAG,SAAS,CAAC;IAC3C,8EAA8E;IAC9E,QAAQ,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,CAAC;IACjC,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;IACnC,0DAA0D;IAC1D,QAAQ,CAAC,WAAW,EAAE,OAAO,CAAC;IAC9B,uFAAuF;IACvF,QAAQ,CAAC,UAAU,EAAE,OAAO,CAAC;IAC7B,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;CACtB;AAcD;;;;;;GAMG;AACH,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,MAAM,GAAG,oBAAoB,CAmCtE;AAED,MAAM,WAAW,oBAAoB;IACnC,QAAQ,CAAC,KAAK,EAAE,YAAY,GAAG,SAAS,CAAC;IACzC,uCAAuC;IACvC,QAAQ,CAAC,UAAU,EAAE,OAAO,CAAC;IAC7B,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;CACtB;AAED,2FAA2F;AAC3F,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,MAAM,GAAG,oBAAoB,CAgBtE;AAED,MAAM,WAAW,iBAAiB;IAChC,QAAQ,CAAC,IAAI,EAAE,eAAe,GAAG,SAAS,CAAC;IAC3C,+FAA+F;IAC/F,QAAQ,CAAC,UAAU,EAAE,OAAO,CAAC;CAC9B;AAED;;;;;;;GAOG;AACH,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,iBAAiB,CAoBjE;AAED,MAAM,WAAW,cAAc;IAC7B,6EAA6E;IAC7E,QAAQ,CAAC,YAAY,EAAE,MAAM,CAAC;IAC9B,2DAA2D;IAC3D,QAAQ,CAAC,YAAY,EAAE,MAAM,CAAC;IAC9B,sFAAsF;IACtF,QAAQ,CAAC,eAAe,EAAE,eAAe,GAAG,SAAS,CAAC;CACvD;AAED;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,cAAc,EAAE,IAAI,EAAE,cAAc,GAAG,YAAY,CA8I1F;AAED;;;;;GAKG;AACH,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,YAAY,GAAG,MAAM,GAAG,SAAS,CAUhF"}
package/dist/header/dates.js CHANGED
@@ -360,6 +360,7 @@ export function resolveStartTime(input, sink) {
360
360
  resolvedDate,
361
361
  dateSource,
362
362
  clock,
363
+ clockSource: timeParse.clock === undefined ? 'none' : 'headerField',
363
364
  secondsSinceMidnight: clock.hour * SECONDS_PER_HOUR + clock.minute * SECONDS_PER_MINUTE + clock.second,
364
365
  };
365
366
  }
@@ -373,6 +374,13 @@ export function formatStartTimeNaive(startTime) {
373
374
  const date = startTime.resolvedDate;
374
375
  if (date === undefined)
375
376
  return undefined;
377
+ // A refused clock has no timestamp either. `clock` is a substituted midnight in that case, and
378
+ // returning `2019-03-11T00:00:00.000` for a file whose starttime field says `23.59.60` states a
379
+ // wall-clock instant the file never gave — which is what this function exists to report, so
380
+ // there is nothing left to return. `api-errors.md` already told readers this was the behaviour
381
+ // under DATE_UNPARSEABLE; until 0.3.17 it was not.
382
+ if (startTime.clockSource === 'none')
383
+ return undefined;
376
384
  return `${formatCalendarDate(date)}T${formatClockTime(startTime.clock)}.000`;
377
385
  }
378
386
  //# sourceMappingURL=dates.js.map
package/dist/header/dates.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/types.d.ts CHANGED
@@ -108,7 +108,22 @@ export interface EdfStartTime {
108
108
  readonly recordingIdDate: EdfCalendarDate | undefined;
109
109
  readonly resolvedDate: EdfCalendarDate | undefined;
110
110
  readonly dateSource: 'headerField' | 'recordingIdField' | 'none';
111
+ /**
112
+ * The wall clock, or MIDNIGHT when the `hh.mm.ss` field could not be read — the type admits no
113
+ * absent clock. `clockSource` is how to tell those two apart, and `secondsSinceMidnight` is 0
114
+ * in the second case for the same reason.
115
+ */
111
116
  readonly clock: EdfClockTime;
117
+ /**
118
+ * `'none'` when the starttime field failed its grammar, so `clock` is a substituted midnight
119
+ * rather than a time the file states.
120
+ *
121
+ * The counterpart of `dateSource`, and added for the same reason: without it a refused clock
122
+ * and a genuine 00:00:00 are the same value, and midnight is an entirely believable start for
123
+ * a sleep study. `formatHeader` prints `unknown` on it and `formatStartTimeNaive` returns
124
+ * `undefined`, neither of which was possible before 0.3.17.
125
+ */
126
+ readonly clockSource: 'headerField' | 'none';
112
127
  readonly secondsSinceMidnight: number;
113
128
  }
114
129
  export interface EdfPatientId {
package/dist/types.d.ts.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "edfcore",
3
- "version": "0.3.15",
3
+ "version": "0.3.17",
4
4
  "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
5
5
  "keywords": [
6
6
  "edf",
package/src/constants.ts CHANGED
@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
93
93
  } as const;
94
94
 
95
95
  /** Published package version. Kept in sync with package.json by a test. */
96
- export const VERSION = '0.3.15';
96
+ export const VERSION = '0.3.17';
package/src/format-header.ts CHANGED
@@ -61,11 +61,18 @@ export function formatHeader(header: EdfHeader, options?: FormatHeaderOptions):
61
61
  lines.push(
62
62
  `${header.variant} · ${header.signals.length} signals · ${header.recordCount} records`,
63
63
  );
64
- lines.push(
65
- `start ${formatDate(start.resolvedDate)} ${String(start.clock.hour).padStart(2, '0')}:` +
66
- `${String(start.clock.minute).padStart(2, '0')}:${String(start.clock.second).padStart(2, '0')}` +
67
- ` (local, no timezone)`,
68
- );
64
+ // `unknown`, not a substituted midnight. The module promise two paragraphs up is that a field
65
+ // edfcore could not resolve prints as `unknown` rather than as a plausible default, and the date
66
+ // half has always honoured it. The clock half printed `00:00:00` for a starttime field that
67
+ // failed its grammar — byte-identical to a file that genuinely started at midnight, which for a
68
+ // sleep study is the most believable start there is (fixed in 0.3.17).
69
+ const clock =
70
+ start.clockSource === 'none'
71
+ ? 'unknown'
72
+ : `${String(start.clock.hour).padStart(2, '0')}:` +
73
+ `${String(start.clock.minute).padStart(2, '0')}:` +
74
+ `${String(start.clock.second).padStart(2, '0')}`;
75
+ lines.push(`start ${formatDate(start.resolvedDate)} ${clock} (local, no timezone)`);
69
76
  lines.push(
70
77
  `record ${header.recordDurationSeconds} s · ${header.recordByteLength} bytes · ` +
71
78
  `${header.bytesPerSample} bytes/sample`,
@@ -94,8 +101,14 @@ export function formatHeader(header: EdfHeader, options?: FormatHeaderOptions):
94
101
  }
95
102
 
96
103
  if (options?.includePatientId === true) {
97
- lines.push(`patient ${header.patient.raw.trim() || 'unknown'}`);
98
- lines.push(`recording ${header.recording.raw.trim() || 'unknown'}`);
104
+ // Through `printable`, for the reason every other field here is: these are 80 arbitrary bytes
105
+ // each. 0.3.2 fixed this class in five outputs and missed these two, because the lines are off
106
+ // by default and no test asked for them. A newline in the patient field opened a row matching
107
+ // the signal-table shape exactly — ` 0 99 signals · 0 records` — and one in the recording
108
+ // field forged a `record 9 s` line at the left margin, contradicting the real geometry
109
+ // three lines above it (fixed in 0.3.16).
110
+ lines.push(`patient ${printable(header.patient.raw.trim()) || 'unknown'}`);
111
+ lines.push(`recording ${printable(header.recording.raw.trim()) || 'unknown'}`);
99
112
  }
100
113
 
101
114
  lines.push('');
package/src/header/dates.ts CHANGED
@@ -435,6 +435,7 @@ export function resolveStartTime(input: StartTimeInput, sink: DiagnosticSink): E
435
435
  resolvedDate,
436
436
  dateSource,
437
437
  clock,
438
+ clockSource: timeParse.clock === undefined ? 'none' : 'headerField',
438
439
  secondsSinceMidnight:
439
440
  clock.hour * SECONDS_PER_HOUR + clock.minute * SECONDS_PER_MINUTE + clock.second,
440
441
  };
@@ -449,5 +450,11 @@ export function resolveStartTime(input: StartTimeInput, sink: DiagnosticSink): E
449
450
  export function formatStartTimeNaive(startTime: EdfStartTime): string | undefined {
450
451
  const date = startTime.resolvedDate;
451
452
  if (date === undefined) return undefined;
453
+ // A refused clock has no timestamp either. `clock` is a substituted midnight in that case, and
454
+ // returning `2019-03-11T00:00:00.000` for a file whose starttime field says `23.59.60` states a
455
+ // wall-clock instant the file never gave — which is what this function exists to report, so
456
+ // there is nothing left to return. `api-errors.md` already told readers this was the behaviour
457
+ // under DATE_UNPARSEABLE; until 0.3.17 it was not.
458
+ if (startTime.clockSource === 'none') return undefined;
452
459
  return `${formatCalendarDate(date)}T${formatClockTime(startTime.clock)}.000`;
453
460
  }
package/src/types.ts CHANGED
@@ -143,7 +143,22 @@ export interface EdfStartTime {
143
143
  readonly recordingIdDate: EdfCalendarDate | undefined;
144
144
  readonly resolvedDate: EdfCalendarDate | undefined;
145
145
  readonly dateSource: 'headerField' | 'recordingIdField' | 'none';
146
+ /**
147
+ * The wall clock, or MIDNIGHT when the `hh.mm.ss` field could not be read — the type admits no
148
+ * absent clock. `clockSource` is how to tell those two apart, and `secondsSinceMidnight` is 0
149
+ * in the second case for the same reason.
150
+ */
146
151
  readonly clock: EdfClockTime;
152
+ /**
153
+ * `'none'` when the starttime field failed its grammar, so `clock` is a substituted midnight
154
+ * rather than a time the file states.
155
+ *
156
+ * The counterpart of `dateSource`, and added for the same reason: without it a refused clock
157
+ * and a genuine 00:00:00 are the same value, and midnight is an entirely believable start for
158
+ * a sleep study. `formatHeader` prints `unknown` on it and `formatStartTimeNaive` returns
159
+ * `undefined`, neither of which was possible before 0.3.17.
160
+ */
161
+ readonly clockSource: 'headerField' | 'none';
147
162
  readonly secondsSinceMidnight: number;
148
163
  }
149
164