edfcore 0.3.14 → 0.3.16

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Files changed (12) hide show
  1. package/CHANGELOG.md +35 -0
  2. package/dist/constants.d.ts +1 -1
  3. package/dist/constants.js +1 -1
  4. package/dist/format-header.d.ts.map +1 -1
  5. package/dist/format-header.js +8 -2
  6. package/dist/format-header.js.map +1 -1
  7. package/dist/tal/annotations.js +9 -1
  8. package/dist/tal/annotations.js.map +1 -1
  9. package/package.json +1 -1
  10. package/src/constants.ts +1 -1
  11. package/src/format-header.ts +8 -2
  12. package/src/tal/annotations.ts +9 -1
package/CHANGELOG.md CHANGED
@@ -6,6 +6,41 @@ alone does not tell you whether you were affected.
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  edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
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  defect; those are called out below.
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+ ## 0.3.16
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+
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+ - **Fixed** `formatHeader` printing the patient and recording identification fields raw under
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+ `includePatientId`, so a file could forge lines in the summary describing it. Both are 80
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+ arbitrary bytes. A newline in the patient field opened a row matching the signal table's shape
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+ exactly — ` 0 99 signals · 0 records` — and one in the recording field forged
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+ `record 9 s` at the left margin, contradicting the real geometry three lines above it.
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+ - **0.3.2 swept this class through five outputs and missed these two.** Both lines are off by
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+ default, so nothing exercised them: the test written for that release built a hostile file and
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+ never asked for the fields that are hidden unless requested. The case now lives in
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+ `tests/unit/hostile-text.test.ts` beside the rest of the class, which is where the next one
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+ should be found rather than discovered.
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+ - Control characters are replaced with `.`, exactly as for every other field. `header.patient.raw`
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+ and `header.recording.raw` still hold the bytes as written.
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+
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+ ## 0.3.15
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+
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+ - **Fixed** `validateRecording` reporting a different set of diagnostics depending on how large its
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+ scan chunks were. On an EDF+C file with a real gap — the single most likely thing a conformance
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+ sweep is pointed at — one 60-record file produced **1, 2, 4, 7, 16 or 31** occurrences of
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+ `START_OFFSET_OUT_OF_RANGE`, varying nothing but `maxMaterializeBytes`. None of them described
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+ the file. Each named a chunk boundary the caller never chose, and the report's "by code" block —
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+ which exists to show which code affects most of the file — ranked them first.
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+ - `traverse` states the broken invariant two lines above the call that broke it: *"The origin is
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+ the recording's, so the sweep's verdict does not depend on its chunk size."*
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+ - Same root cause as 0.3.14, in the other direction. Record 0's offset was resolved from
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+ `startOffsetTicks` only, so the three callers that pass `originTicks` instead — the validation
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+ sweep, the index scan and the envelope fold — re-derived it from whichever record their chunk
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+ began on, and a chunk starting after a gap derives a value outside [0, 1). The two names are one
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+ quantity and each now falls back to the other, so all three are fixed at the derivation rather
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+ than at the call sites that happened to be found.
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+ - **A record 0 offset that really is out of range is still reported, and still exactly once** — it
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+ comes from the open-time timeline probe, which the sweep folds in. That is asserted, because a
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+ fix that silenced the genuine check would look identical in the counts above.
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+
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  ## 0.3.14
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  - **Fixed** `readAnnotations` deriving the onset of a record with no timekeeping TAL from an origin
package/dist/constants.d.ts CHANGED
@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
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  readonly reserved: 224;
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export declare const VERSION = "0.3.14";
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+ export declare const VERSION = "0.3.16";
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  //# sourceMappingURL=constants.d.ts.map
package/dist/constants.js CHANGED
@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
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  reserved: 224,
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export const VERSION = '0.3.14';
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+ export const VERSION = '0.3.16';
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  //# sourceMappingURL=constants.js.map
package/dist/format-header.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"format-header.d.ts","sourceRoot":"","sources":["../src/format-header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAKH,OAAO,KAAK,EAAmB,SAAS,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAgClF;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,CAAC,EAAE,mBAAmB,GAAG,MAAM,CAoFrF"}
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+ {"version":3,"file":"format-header.d.ts","sourceRoot":"","sources":["../src/format-header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAKH,OAAO,KAAK,EAAmB,SAAS,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAgClF;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,CAAC,EAAE,mBAAmB,GAAG,MAAM,CA0FrF"}
package/dist/format-header.js CHANGED
@@ -80,8 +80,14 @@ export function formatHeader(header, options) {
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  lines.push(' record count recovered from the source length');
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  }
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  if (options?.includePatientId === true) {
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- lines.push(`patient ${header.patient.raw.trim() || 'unknown'}`);
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- lines.push(`recording ${header.recording.raw.trim() || 'unknown'}`);
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+ // Through `printable`, for the reason every other field here is: these are 80 arbitrary bytes
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+ // each. 0.3.2 fixed this class in five outputs and missed these two, because the lines are off
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+ // by default and no test asked for them. A newline in the patient field opened a row matching
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+ // the signal-table shape exactly — ` 0 99 signals · 0 records` — and one in the recording
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+ // field forged a `record 9 s` line at the left margin, contradicting the real geometry
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+ // three lines above it (fixed in 0.3.16).
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+ lines.push(`patient ${printable(header.patient.raw.trim()) || 'unknown'}`);
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+ lines.push(`recording ${printable(header.recording.raw.trim()) || 'unknown'}`);
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  }
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  lines.push('');
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  lines.push(' # label kind rate range');
package/dist/format-header.js.map CHANGED
@@ -1 +1 @@
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1
+ {"version":3,"file":"format-header.js","sourceRoot":"","sources":["../src/format-header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAClD,OAAO,EAAE,oBAAoB,EAAE,MAAM,0BAA0B,CAAC;AAChE,OAAO,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAGhD,SAAS,UAAU,CAAC,IAAiC;IACnD,IAAI,IAAI,KAAK,SAAS;QAAE,OAAO,SAAS,CAAC;IACzC,MAAM,KAAK,GAAG,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;IAClD,MAAM,GAAG,GAAG,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;IAC9C,OAAO,GAAG,IAAI,CAAC,IAAI,IAAI,KAAK,IAAI,GAAG,EAAE,CAAC;AACxC,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,mBAAmB,CAAC,KAAa;IACxC,IAAI,KAAK,GAAG,EAAE;QAAE,OAAO,SAAS,CAAC;IACjC,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,GAAG,gBAAgB,CAAC,CAAC;IAC/C,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC;IACvC,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC;IAChD,MAAM,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;IACxB,MAAM,GAAG,GAAG,CAAC,CAAS,EAAU,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;IAC9D,OAAO,GAAG,GAAG,CAAC,KAAK,CAAC,IAAI,GAAG,CAAC,OAAO,CAAC,IAAI,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC;AACtD,CAAC;AAED,SAAS,UAAU,CAAC,MAAoC;IACtD,iFAAiF;IACjF,OAAO,MAAM,CAAC,YAAY,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,YAAY,KAAK,CAAC;AAC/E,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,YAAY,CAAC,MAAiB,EAAE,OAA6B;IAC3E,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,KAAK,GAAG,MAAM,CAAC,SAAS,CAAC;IAE/B,KAAK,CAAC,IAAI,CACR,GAAG,MAAM,CAAC,OAAO,MAAM,MAAM,CAAC,OAAO,CAAC,MAAM,cAAc,MAAM,CAAC,WAAW,UAAU,CACvF,CAAC;IACF,KAAK,CAAC,IAAI,CACR,gBAAgB,UAAU,CAAC,KAAK,CAAC,YAAY,CAAC,IAAI,MAAM,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,GAAG;QAC5F,GAAG,MAAM,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,MAAM,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE;QAC/F,uBAAuB,CAC1B,CAAC;IACF,KAAK,CAAC,IAAI,CACR,gBAAgB,MAAM,CAAC,qBAAqB,QAAQ,MAAM,CAAC,gBAAgB,WAAW;QACpF,GAAG,MAAM,CAAC,cAAc,eAAe,CAC1C,CAAC;IACF,2FAA2F;IAC3F,+FAA+F;IAC/F,gGAAgG;IAChG,8FAA8F;IAC9F,EAAE;IACF,4FAA4F;IAC5F,+FAA+F;IAC/F,+FAA+F;IAC/F,MAAM,aAAa,GAAG,MAAM,CAAC,UAAU,KAAK,eAAe,CAAC;IAC5D,MAAM,KAAK,GAAG,aAAa,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,cAAc,CAAC;IAC9D,KAAK,CAAC,IAAI,CACR,GAAG,KAAK,IAAI,mBAAmB,CAAC,MAAM,CAAC,mBAAmB,GAAG,MAAM,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,GAAG;QACzF,IAAI,MAAM,CAAC,WAAW,MAAM,MAAM,CAAC,qBAAqB,KAAK,CAChE,CAAC;IACF,IAAI,aAAa,EAAE,CAAC;QAClB,KAAK,CAAC,IAAI,CAAC,0EAA0E,CAAC,CAAC;QACvF,KAAK,CAAC,IAAI,CAAC,kFAAkF,CAAC,CAAC;IACjG,CAAC;IACD,IAAI,MAAM,CAAC,iBAAiB,KAAK,kBAAkB,EAAE,CAAC;QACpD,uFAAuF;QACvF,KAAK,CAAC,IAAI,CAAC,4DAA4D,CAAC,CAAC;IAC3E,CAAC;IAED,IAAI,OAAO,EAAE,gBAAgB,KAAK,IAAI,EAAE,CAAC;QACvC,8FAA8F;QAC9F,+FAA+F;QAC/F,8FAA8F;QAC9F,4FAA4F;QAC5F,6FAA6F;QAC7F,0CAA0C;QAC1C,KAAK,CAAC,IAAI,CAAC,gBAAgB,SAAS,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC,IAAI,SAAS,EAAE,CAAC,CAAC;QAChF,KAAK,CAAC,IAAI,CAAC,gBAAgB,SAAS,CAAC,MAAM,CAAC,SAAS,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC,IAAI,SAAS,EAAE,CAAC,CAAC;IACpF,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,KAAK,CAAC,IAAI,CAAC,yDAAyD,CAAC,CAAC;IACtE,KAAK,MAAM,MAAM,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;QACpC,MAAM,KAAK,GAAG,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;QAC/C,0FAA0F;QAC1F,2FAA2F;QAC3F,0FAA0F;QAC1F,mFAAmF;QACnF,MAAM,KAAK,GAAG,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QAC9D,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QACpC,MAAM,IAAI,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAC1C,MAAM,KAAK,GACT,MAAM,CAAC,IAAI,KAAK,aAAa;YAC3B,CAAC,CAAC,GAAG;YACL,CAAC,CAAC,MAAM,CAAC,KAAK,KAAK,SAAS;gBAC1B,CAAC,CAAC,iBAAiB;gBACnB,CAAC,CAAC,GAAG,MAAM,CAAC,eAAe,KAAK,MAAM,CAAC,eAAe,IAAI,MAAM,CAAC,iBAAiB,EAAE,CAAC;QAC3F,KAAK,CAAC,IAAI,CAAC,GAAG,KAAK,KAAK,KAAK,GAAG,IAAI,GAAG,IAAI,IAAI,KAAK,EAAE,CAAC,CAAC;IAC1D,CAAC;IAED,IAAI,MAAM,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAClC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACf,8FAA8F;QAC9F,sFAAsF;QACtF,MAAM,OAAO,GAAG,oBAAoB,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;QACzD,MAAM,OAAO,GACX;YACE,CAAC,OAAO,CAAC,MAAM,EAAE,OAAO,CAAC;YACzB,CAAC,OAAO,CAAC,QAAQ,EAAE,SAAS,CAAC;YAC7B,CAAC,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC;SAE1B;aACE,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,KAAK,GAAG,CAAC,CAAC;aAC9B,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,QAAQ,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,IAAI,QAAQ,EAAE,CAAC;aAClD,IAAI,CAAC,IAAI,CAAC,CAAC;QACd,KAAK,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,WAAW,CAAC,MAAM,mBAAmB,OAAO,EAAE,CAAC,CAAC;QACrE,KAAK,CAAC,IAAI,CAAC,4DAA4D,CAAC,CAAC;IAC3E,CAAC;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC"}
package/dist/tal/annotations.js CHANGED
@@ -420,7 +420,15 @@ function resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTi
420
420
  // A caller who knows the file's own offset outranks any derivation: the offset is a property of
421
421
  // the recording, and deriving it from an observed onset only works while the records in between
422
422
  // are contiguous. `readAnnotations` always knows it, from the timeline.
423
- const supplied = options?.startOffsetTicks;
423
+ //
424
+ // `originTicks` is the same quantity under the other name, and is accepted here for the same
425
+ // reason it accepts `startOffsetTicks` in the grid above. Until 0.3.15 it was not, and the three
426
+ // callers that pass only `originTicks` — the validation sweep, the index scan and the envelope
427
+ // fold — re-derived the offset from whichever record their chunk happened to start on. On an
428
+ // EDF+C file with a real gap every chunk beginning after it derived a value outside [0, 1) and
429
+ // reported START_OFFSET_OUT_OF_RANGE against a chunk boundary the caller never chose, so one
430
+ // file produced 1, 2, 4, 7, 16 or 31 of them purely as a function of `maxMaterializeBytes`.
431
+ const supplied = options?.startOffsetTicks ?? options?.originTicks;
424
432
  if (supplied !== undefined)
425
433
  return supplied;
426
434
  if (records.start === 0) {
package/dist/tal/annotations.js.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "edfcore",
3
- "version": "0.3.14",
3
+ "version": "0.3.16",
4
4
  "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
5
5
  "keywords": [
6
6
  "edf",
package/src/constants.ts CHANGED
@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
93
93
  } as const;
94
94
 
95
95
  /** Published package version. Kept in sync with package.json by a test. */
96
- export const VERSION = '0.3.14';
96
+ export const VERSION = '0.3.16';
package/src/format-header.ts CHANGED
@@ -94,8 +94,14 @@ export function formatHeader(header: EdfHeader, options?: FormatHeaderOptions):
94
94
  }
95
95
 
96
96
  if (options?.includePatientId === true) {
97
- lines.push(`patient ${header.patient.raw.trim() || 'unknown'}`);
98
- lines.push(`recording ${header.recording.raw.trim() || 'unknown'}`);
97
+ // Through `printable`, for the reason every other field here is: these are 80 arbitrary bytes
98
+ // each. 0.3.2 fixed this class in five outputs and missed these two, because the lines are off
99
+ // by default and no test asked for them. A newline in the patient field opened a row matching
100
+ // the signal-table shape exactly — ` 0 99 signals · 0 records` — and one in the recording
101
+ // field forged a `record 9 s` line at the left margin, contradicting the real geometry
102
+ // three lines above it (fixed in 0.3.16).
103
+ lines.push(`patient ${printable(header.patient.raw.trim()) || 'unknown'}`);
104
+ lines.push(`recording ${printable(header.recording.raw.trim()) || 'unknown'}`);
99
105
  }
100
106
 
101
107
  lines.push('');
package/src/tal/annotations.ts CHANGED
@@ -582,7 +582,15 @@ function resolveStartOffsetTicks(
582
582
  // A caller who knows the file's own offset outranks any derivation: the offset is a property of
583
583
  // the recording, and deriving it from an observed onset only works while the records in between
584
584
  // are contiguous. `readAnnotations` always knows it, from the timeline.
585
- const supplied = options?.startOffsetTicks;
585
+ //
586
+ // `originTicks` is the same quantity under the other name, and is accepted here for the same
587
+ // reason it accepts `startOffsetTicks` in the grid above. Until 0.3.15 it was not, and the three
588
+ // callers that pass only `originTicks` — the validation sweep, the index scan and the envelope
589
+ // fold — re-derived the offset from whichever record their chunk happened to start on. On an
590
+ // EDF+C file with a real gap every chunk beginning after it derived a value outside [0, 1) and
591
+ // reported START_OFFSET_OUT_OF_RANGE against a chunk boundary the caller never chose, so one
592
+ // file produced 1, 2, 4, 7, 16 or 31 of them purely as a function of `maxMaterializeBytes`.
593
+ const supplied = options?.startOffsetTicks ?? options?.originTicks;
586
594
  if (supplied !== undefined) return supplied;
587
595
 
588
596
  if (records.start === 0) {