edfcore 0.3.12 → 0.3.14

package/CHANGELOG.md

@@ -6,6 +6,47 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
 
+## 0.3.14
+
+- **Fixed** `readAnnotations` deriving the onset of a record with no timekeeping TAL from an origin
+  of zero instead of the recording's start. On a file that declares a sub-second start offset, the
+  same record reported one start time read alone and another read alongside a neighbour that did
+  carry a TAL: record 5 of a 0.25 s-offset file came back at **5.00 s** on its own and **5.25 s**
+  in a whole-file read. Every other decode path agreed on 5.25 s.
+- That is the 0.1.4 failure verbatim — "the same record reported two different start times
+  depending on how many neighbours were read with it" — surviving on one path. It is the seventh
+  place this project has found it and the eighth fix for the shape.
+- The cause was two option names for one quantity. `DecodeAnnotationsOptions.originTicks` feeds the
+  record-onset grid and `startOffsetTicks` feeds the annotation rebasing; both are documented as
+  "pass `timeline.startOffsetTicks`", and neither fell back to the other. `readAnnotations` passed
+  only the second — so the one public function whose docs say it "passes `timeline.startOffsetTicks`
+  for you" was the one that did not supply this origin. `originTicks` now falls back to
+  `startOffsetTicks`, which fixes any direct `decodeAnnotations` caller that passes one and not the
+  other, rather than only the call site that happened to be found.
+- A file with no start offset is unaffected, because the two origins coincide at zero. That is why
+  this survived: it is invisible on every file that does not bother to state its offset, and wrong
+  only on the ones careful enough to.
+
+## 0.3.13
+
+- **Fixed** `readTriggers` carrying its running trigger state across a gap, so a code held before
+  and after a discontinuity was reported once and read as one continuous epoch. A BDF+D file with
+  code 5 asserted, a five-minute hole, and code 5 asserted again returned a SINGLE event at 0 s. A
+  consumer differencing consecutive events measured a 308-second trigger epoch out of eight seconds
+  of recording, and nothing in the returned array said a gap had happened.
+- The old reasoning was that a code held over a gap should not be reported twice. It is not the
+  same observation twice: the records between two segments do not exist, so what the trigger did in
+  between is unknown, and staying silent asserted that it did nothing. A gap is a left edge, and
+  the first in-window sample of every contiguous run now produces an event carrying the code in
+  force there — the same rule the window's own left edge has followed since 0.2.19.
+- **Added** `EdfTriggerEvent.precededByGap`, the same `EdfGap` an `EdfChunk` carries and meaning
+  the same thing. Set on the first event of each run, so a resume is distinguishable from a latch
+  the hardware actually made; `undefined` elsewhere, and always `undefined` on a probed index.
+- **A contiguous file resolves to one run, so nothing about it changes** — same events, same times,
+  one left edge. This is the last function in the package that returned a flat array spanning a
+  discontinuity; `readWindow` splits at one, `mergeChunks` refuses to join across one, and
+  `EdfChunk.precededByGap` has always reported one.
+
 ## 0.3.12
 
 - **Fixed** `error.name` becoming a mangled identifier in any minified consumer bundle. Every

package/dist/biosemi.d.ts

@@ -58,6 +58,17 @@ export declare function decodeStatusWord(sample: number): EdfStatusWord;
  * in-window sample always produces an event. That is the same rule a whole-file read already
  * follows — `t = 0` yields an event for whatever the first sample holds, transition or not — so an
  * aligned and an unaligned window behave alike. Filter on `trigger` if you only want assertions.
+ *
+ * A GAP IS A LEFT EDGE TOO. The running trigger state does not survive one, and the first
+ * in-window sample of every contiguous run produces an event carrying `precededByGap`. Until
+ * 0.3.13 the state carried across, on the reasoning that a code held over a gap should not be
+ * reported twice — but it is not the same observation twice. The records between two segments do
+ * not exist, so what the trigger did in between is unknown, and staying silent asserted that it
+ * did nothing. A file with one code held before and after a five-minute hole returned a SINGLE
+ * event, and a consumer differencing consecutive events read one 308-second epoch out of eight
+ * seconds of recording.
+ *
+ * A contiguous file has exactly one run, so nothing about it changes.
  */
 export declare function readTriggers(recording: EdfRecording, selection: TriggerSelection, options?: ReadOptions): Promise<readonly EdfTriggerEvent[]>;
 //# sourceMappingURL=biosemi.d.ts.map

package/dist/biosemi.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"biosemi.d.ts","sourceRoot":"","sources":["../src/biosemi.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAQH,OAAO,KAAK,EACV,SAAS,EACT,YAAY,EAEZ,SAAS,EACT,aAAa,EACb,eAAe,EACf,WAAW,EAEX,gBAAgB,EACjB,MAAM,YAAY,CAAC;AAWpB;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,SAAS,GAAG,SAAS,GAAG,SAAS,CAOxE;AAED;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,MAAM,GAAG,aAAa,CAS9D;AAqBD;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAuCG;AACH,wBAAsB,YAAY,CAChC,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,gBAAgB,EAC3B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,eAAe,EAAE,CAAC,CAiGrC"}

package/dist/biosemi.js

@@ -17,6 +17,7 @@
 import { decodeDigitalCounted } from './decode/digital.js';
 import { readRecordBytes } from './io/read.js';
 import { scanChunkRecords } from './record-index.js';
+import { gapBefore } from './recording.js';
 import { secondsToTicks, ticksToSeconds } from './tal/ticks.js';
 import { resolveTimeWindow } from './time/window.js';
 /** BioSemi's own label for the channel. Matched case-insensitively after trimming. */
@@ -104,6 +105,17 @@ function segmentContaining(segments, recordIndex) {
  * in-window sample always produces an event. That is the same rule a whole-file read already
  * follows — `t = 0` yields an event for whatever the first sample holds, transition or not — so an
  * aligned and an unaligned window behave alike. Filter on `trigger` if you only want assertions.
+ *
+ * A GAP IS A LEFT EDGE TOO. The running trigger state does not survive one, and the first
+ * in-window sample of every contiguous run produces an event carrying `precededByGap`. Until
+ * 0.3.13 the state carried across, on the reasoning that a code held over a gap should not be
+ * reported twice — but it is not the same observation twice. The records between two segments do
+ * not exist, so what the trigger did in between is unknown, and staying silent asserted that it
+ * did nothing. A file with one code held before and after a five-minute hole returned a SINGLE
+ * event, and a consumer differencing consecutive events read one 308-second epoch out of eight
+ * seconds of recording.
+ *
+ * A contiguous file has exactly one run, so nothing about it changes.
  */
 export async function readTriggers(recording, selection, options) {
     const { source, header, timeline } = recording;
@@ -119,16 +131,21 @@ export async function readTriggers(recording, selection, options) {
     const durationTicks = header.recordDurationTicks;
     const samplesPerRecord = status.samplesPerRecord;
     const events = [];
-    // The last code SEEN, in the window or before it. Carried across runs so a trigger held over a
-    // gap is not reported twice, and updated for out-of-window samples too — that is what stops a
-    // code asserted before the window from being re-reported as a fresh onset inside it.
-    let previous;
-    // Whether anything has been reported yet. The first in-window sample is always an event: it
-    // carries the code in force at the window's left edge, which a transitions-only rule would lose.
-    let reported = false;
     for (const records of ranges) {
         // A range from `resolveTimeWindow` never spans a gap, so one segment covers all of it.
         const segment = segmentContaining(recording.index.segments, records.start);
+        // PER RUN, not per window. The last code SEEN within this run, updated for out-of-window
+        // samples too — that is what stops a code asserted before the window from being re-reported
+        // as a fresh onset inside it. It is deliberately NOT carried in from the previous run: the
+        // records between two segments do not exist, so the previous run's last code says nothing
+        // about what the hardware was doing when this one began.
+        let previous;
+        // Whether this run has reported yet. Its first in-window sample is always an event, carrying
+        // the code in force at that edge — which a transitions-only rule would lose.
+        let reported = false;
+        // What precedes this run, so a resume is distinguishable from a latch. `undefined` on a
+        // probed index, exactly as it is on `EdfChunk`.
+        const precededByGap = gapBefore(recording.index, records.start);
         const chunkRecords = scanChunkRecords(header, options?.maxMaterializeBytes);
         let scanned = 0;
         let scratch;
@@ -160,6 +177,7 @@ export async function readTriggers(recording, selection, options) {
                         continue;
                     if (reported && !changed)
                         continue;
+                    const firstOfRun = !reported;
                     reported = true;
                     events.push({
                         sampleIndex: recordIndex * samplesPerRecord + s,
@@ -167,6 +185,8 @@ export async function readTriggers(recording, selection, options) {
                         ticks,
                         trigger: word.trigger,
                         status: word,
+                        // The gap precedes the RUN, so it belongs to the run's first event and to no other.
+                        precededByGap: firstOfRun ? precededByGap : undefined,
                     });
                 }
             }

package/dist/biosemi.js.map

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package/dist/constants.d.ts

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.3.12";
+export declare const VERSION = "0.3.14";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.12';
+export const VERSION = '0.3.14';
 //# sourceMappingURL=constants.js.map

package/dist/tal/annotations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAyUrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CA2JtB"}
+{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAyUrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAmKtB"}

package/dist/tal/annotations.js

@@ -339,8 +339,16 @@ export function decodeAnnotations(header, recordBytes, records, options) {
     // the range: the same record got one onset when read alone and another when read alongside a
     // neighbour that did carry a timekeeping TAL, which in turn made chunk boundaries, segment
     // boundaries and even a fatal TIMELINE_NOT_MONOTONIC a function of the scan chunk size.
+    //
+    // `startOffsetTicks` is the SAME quantity under the other name — record 0's true start — and
+    // both option docs say to pass `timeline.startOffsetTicks`. They are consumed in two places:
+    // `originTicks` by this grid, `startOffsetTicks` by the annotation rebasing below. Until 0.3.14
+    // neither fell back to the other, and `readAnnotations` passed only the second — so the one
+    // public function documented to handle the origin for you was the one that did not, and a
+    // record with no timekeeping TAL of its own moved by the start offset depending on how many
+    // neighbours shared the call.
     const baseTicks = firstObserved === undefined
-        ? (options?.originTicks ?? 0n)
+        ? (options?.originTicks ?? options?.startOffsetTicks ?? 0n)
         : firstObserved.ticks - BigInt(firstObserved.recordIndex) * durationTicks;
     const recordOnsetTicks = new BigInt64Array(records.count);
     for (let position = 0; position < records.count; position += 1) {

package/dist/tal/annotations.js.map

@@ -1 +1 @@
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package/dist/types.d.ts

@@ -476,6 +476,16 @@ export interface EdfTriggerEvent {
     readonly ticks: bigint;
     readonly trigger: number;
     readonly status: EdfStatusWord;
+    /**
+     * The gap immediately before this event, when there is one — the same field `EdfChunk` carries,
+     * and it means the same thing.
+     *
+     * Set on the FIRST event of each contiguous run, so an event that reports the code in force
+     * where the recording RESUMED is distinguishable from a transition the hardware actually
+     * latched. `undefined` everywhere else, and always `undefined` on a probed index, because
+     * nobody has read the onsets in between.
+     */
+    readonly precededByGap: EdfGap | undefined;
 }
 export interface TriggerSelection {
     readonly startSeconds: number;
@@ -591,6 +601,11 @@ export interface DecodeAnnotationsOptions extends ParseOptions {
      *
      * Pass `timeline.startOffsetTicks` whenever it is known. Decoding a range in isolation, as
      * `openEdf` does before any timeline exists, correctly omits it.
+     *
+     * `startOffsetTicks` above is the same quantity under the other name — record 0's true start —
+     * and is used when this is absent. The two are consumed in different places (this one by the
+     * record-onset grid, that one by the annotation rebasing), and until 0.3.14 neither fell back
+     * to the other, so a caller who passed only one got the origin applied in only one of them.
      */
     readonly originTicks?: bigint;
 }

package/dist/types.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.3.12",
+  "version": "0.3.14",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/biosemi.ts

@@ -18,6 +18,7 @@
 import { decodeDigitalCounted } from './decode/digital.js';
 import { readRecordBytes } from './io/read.js';
 import { scanChunkRecords } from './record-index.js';
+import { gapBefore } from './recording.js';
 import { secondsToTicks, ticksToSeconds } from './tal/ticks.js';
 import { resolveTimeWindow } from './time/window.js';
 import type {
@@ -121,6 +122,17 @@ function segmentContaining(
  * in-window sample always produces an event. That is the same rule a whole-file read already
  * follows — `t = 0` yields an event for whatever the first sample holds, transition or not — so an
  * aligned and an unaligned window behave alike. Filter on `trigger` if you only want assertions.
+ *
+ * A GAP IS A LEFT EDGE TOO. The running trigger state does not survive one, and the first
+ * in-window sample of every contiguous run produces an event carrying `precededByGap`. Until
+ * 0.3.13 the state carried across, on the reasoning that a code held over a gap should not be
+ * reported twice — but it is not the same observation twice. The records between two segments do
+ * not exist, so what the trigger did in between is unknown, and staying silent asserted that it
+ * did nothing. A file with one code held before and after a five-minute hole returned a SINGLE
+ * event, and a consumer differencing consecutive events read one 308-second epoch out of eight
+ * seconds of recording.
+ *
+ * A contiguous file has exactly one run, so nothing about it changes.
  */
 export async function readTriggers(
   recording: EdfRecording,
@@ -151,17 +163,22 @@ export async function readTriggers(
   const samplesPerRecord = status.samplesPerRecord;
 
   const events: EdfTriggerEvent[] = [];
-  // The last code SEEN, in the window or before it. Carried across runs so a trigger held over a
-  // gap is not reported twice, and updated for out-of-window samples too — that is what stops a
-  // code asserted before the window from being re-reported as a fresh onset inside it.
-  let previous: number | undefined;
-  // Whether anything has been reported yet. The first in-window sample is always an event: it
-  // carries the code in force at the window's left edge, which a transitions-only rule would lose.
-  let reported = false;
 
   for (const records of ranges) {
     // A range from `resolveTimeWindow` never spans a gap, so one segment covers all of it.
     const segment = segmentContaining(recording.index.segments, records.start);
+    // PER RUN, not per window. The last code SEEN within this run, updated for out-of-window
+    // samples too — that is what stops a code asserted before the window from being re-reported
+    // as a fresh onset inside it. It is deliberately NOT carried in from the previous run: the
+    // records between two segments do not exist, so the previous run's last code says nothing
+    // about what the hardware was doing when this one began.
+    let previous: number | undefined;
+    // Whether this run has reported yet. Its first in-window sample is always an event, carrying
+    // the code in force at that edge — which a transitions-only rule would lose.
+    let reported = false;
+    // What precedes this run, so a resume is distinguishable from a latch. `undefined` on a
+    // probed index, exactly as it is on `EdfChunk`.
+    const precededByGap = gapBefore(recording.index, records.start);
     const chunkRecords = scanChunkRecords(header, options?.maxMaterializeBytes);
     let scanned = 0;
     let scratch: Int32Array | undefined;
@@ -198,6 +215,7 @@ export async function readTriggers(
 
           if (ticks < windowStartTicks || ticks >= windowEndTicks) continue;
           if (reported && !changed) continue;
+          const firstOfRun = !reported;
           reported = true;
 
           events.push({
@@ -206,6 +224,8 @@ export async function readTriggers(
             ticks,
             trigger: word.trigger,
             status: word,
+            // The gap precedes the RUN, so it belongs to the run's first event and to no other.
+            precededByGap: firstOfRun ? precededByGap : undefined,
           });
         }
       }

package/src/constants.ts

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.12';
+export const VERSION = '0.3.14';

package/src/tal/annotations.ts

@@ -476,9 +476,17 @@ export function decodeAnnotations(
   // the range: the same record got one onset when read alone and another when read alongside a
   // neighbour that did carry a timekeeping TAL, which in turn made chunk boundaries, segment
   // boundaries and even a fatal TIMELINE_NOT_MONOTONIC a function of the scan chunk size.
+  //
+  // `startOffsetTicks` is the SAME quantity under the other name — record 0's true start — and
+  // both option docs say to pass `timeline.startOffsetTicks`. They are consumed in two places:
+  // `originTicks` by this grid, `startOffsetTicks` by the annotation rebasing below. Until 0.3.14
+  // neither fell back to the other, and `readAnnotations` passed only the second — so the one
+  // public function documented to handle the origin for you was the one that did not, and a
+  // record with no timekeeping TAL of its own moved by the start offset depending on how many
+  // neighbours shared the call.
   const baseTicks =
     firstObserved === undefined
-      ? (options?.originTicks ?? 0n)
+      ? (options?.originTicks ?? options?.startOffsetTicks ?? 0n)
       : firstObserved.ticks - BigInt(firstObserved.recordIndex) * durationTicks;
 
   const recordOnsetTicks = new BigInt64Array(records.count);

package/src/types.ts

@@ -546,6 +546,16 @@ export interface EdfTriggerEvent {
   readonly ticks: bigint;
   readonly trigger: number;
   readonly status: EdfStatusWord;
+  /**
+   * The gap immediately before this event, when there is one — the same field `EdfChunk` carries,
+   * and it means the same thing.
+   *
+   * Set on the FIRST event of each contiguous run, so an event that reports the code in force
+   * where the recording RESUMED is distinguishable from a transition the hardware actually
+   * latched. `undefined` everywhere else, and always `undefined` on a probed index, because
+   * nobody has read the onsets in between.
+   */
+  readonly precededByGap: EdfGap | undefined;
 }
 
 export interface TriggerSelection {
@@ -677,6 +687,11 @@ export interface DecodeAnnotationsOptions extends ParseOptions {
    *
    * Pass `timeline.startOffsetTicks` whenever it is known. Decoding a range in isolation, as
    * `openEdf` does before any timeline exists, correctly omits it.
+   *
+   * `startOffsetTicks` above is the same quantity under the other name — record 0's true start —
+   * and is used when this is absent. The two are consumed in different places (this one by the
+   * record-onset grid, that one by the annotation rebasing), and until 0.3.14 neither fell back
+   * to the other, so a caller who passed only one got the origin applied in only one of them.
    */
   readonly originTicks?: bigint;
 }