edfcore 0.3.104 → 0.3.105

package/CHANGELOG.md

@@ -6,6 +6,23 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
 
+## 0.3.105
+
+- **Fixed** a discarded TAL still reporting that it was kept.
+  - The `onset-unsigned` defect — "so the TAL was kept and the onset read as positive" — was logged
+    at the point the missing sign was recovered, which is upstream of the four branches that can
+    still throw the same TAL away: an out-of-range onset, an over-long duration field, a bad
+    duration grammar and an out-of-range duration. An unsigned onset combined with any of them
+    produced two `TAL_MALFORMED` entries about one TAL asserting opposite outcomes, and the one
+    that ran first was the false one. With an out-of-range onset the pair is indistinguishable by
+    anything but prose: same code, same offset, same length, same raw bytes, `occurrences` 1 each.
+  - It is now logged once the TAL is known to survive, ahead of the text scan so a kept TAL's
+    issues keep the order they had. Consequently its `occurrences` counts surviving unsigned
+    onsets, and its offset and raw bytes are the first surviving one's.
+  - 0.3.19 fixed the cross-TAL version of this by keying the log on the defect kind. That stops two
+    different TALs from describing each other and does nothing for one TAL describing itself twice;
+    both guards written for it build two TALs, so they passed throughout. The new guard builds one.
+
 ## 0.3.104
 
 - **Fixed** annotation text reaching a diagnostic message unescaped, which let a file forge a

package/dist/constants.d.ts

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.3.104";
+export declare const VERSION = "0.3.105";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.104';
+export const VERSION = '0.3.105';
 //# sourceMappingURL=constants.js.map

package/dist/tal/grammar.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"grammar.d.ts","sourceRoot":"","sources":["../../src/tal/grammar.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AAWH,MAAM,MAAM,eAAe,GAAG,OAAO,GAAG,kBAAkB,CAAC;AAE3D,6EAA6E;AAC7E,MAAM,WAAW,OAAO;IACtB,oFAAoF;IACpF,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,QAAQ,EAAE,eAAe,CAAC;IACnC,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;CAC7B;AAED,uEAAuE;AACvE,MAAM,MAAM,YAAY,GACpB,eAAe,GACf,6BAA6B,GAC7B,+BAA+B,GAC/B,0BAA0B,CAAC;AAE/B;;;;;GAKG;AACH,MAAM,WAAW,QAAQ;IACvB,QAAQ,CAAC,IAAI,EAAE,YAAY,CAAC;IAC5B,6DAA6D;IAC7D,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,+DAA+D;IAC/D,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IACxB,uFAAuF;IACvF,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,kGAAkG;IAClG,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;CAC1B;AAED,gGAAgG;AAChG,MAAM,WAAW,SAAS;IACxB;;;;OAIG;IACH,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,qCAAqC;IACrC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,WAAW,EAAE,MAAM,GAAG,SAAS,CAAC;IACzC,QAAQ,CAAC,aAAa,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3C,QAAQ,CAAC,KAAK,EAAE,SAAS,OAAO,EAAE,CAAC;CACpC;AAED,MAAM,WAAW,cAAc;IAC7B,QAAQ,CAAC,IAAI,EAAE,SAAS,SAAS,EAAE,CAAC;IACpC,QAAQ,CAAC,MAAM,EAAE,SAAS,QAAQ,EAAE,CAAC;CACtC;AAED,oEAAoE;AACpE,MAAM,WAAW,YAAY;IAC3B,+EAA+E;IAC/E,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,YAAY,EAAE,MAAM,GAAG,SAAS,CAAC;CAC3C;AAED,iGAAiG;AACjG,eAAO,MAAM,qBAAqB,EAAE,MAAW,CAAC;AA6FhD;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAUnD;AAED;;;;;GAKG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAItF;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAGtF;AA6VD;;;;;;;;;GASG;AACH,wBAAgB,cAAc,CAC5B,KAAK,EAAE,UAAU,EACjB,WAAW,EAAE,MAAM,EACnB,WAAW,EAAE,MAAM,GAClB,cAAc,CAmChB;AAED;;;;;;;GAOG;AACH,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,GAAG,YAAY,CAM3D"}

package/dist/tal/grammar.js

@@ -235,6 +235,7 @@ function scanTal(region, start, ordinal, log) {
     const onsetRaw = decodeHeaderLatin1(sliceBytes(region, start, onsetEnd - start));
     const signedOnset = parseSignedTicks(onsetRaw);
     let onsetTicks = signedOnset.ticks;
+    let onsetWasUnsigned = false;
     if (!signedOnset.ok) {
         // `parseSignedTicks` fails for a missing sign and for a bad magnitude alike. Only the first
         // is recoverable, and re-parsing without the sign is how they are told apart.
@@ -245,8 +246,11 @@ function scanTal(region, start, ordinal, log) {
             return { tal: undefined, next };
         }
         onsetTicks = unsignedOnset.ticks;
-        logIssue(log, 'TAL_MALFORMED', 'onset-unsigned', region, start, onsetEnd - start, `the onset "${onsetRaw}" has no mandatory sign; the value is unambiguous, so the TAL was ` +
-            'kept and the onset read as positive');
+        // DEFERRED, not logged here. This is the one "the TAL was kept" message that sits upstream of
+        // a discard branch — four of them, in fact — so an unsigned onset combined with any of them
+        // reported two dispositions of the same TAL, and the one that ran first was the false one.
+        // See the flush below the duration checks (fixed in 0.3.105).
+        onsetWasUnsigned = true;
     }
     if (outsideInt64(onsetTicks)) {
         logIssue(log, 'TAL_MALFORMED', 'onset-out-of-range', region, start, onsetEnd - start, `the onset "${onsetRaw}" is outside the +/-2^63 tick range edfcore can represent, so the ` +
@@ -283,6 +287,13 @@ function scanTal(region, start, ordinal, log) {
         }
         durationTicks = duration.ticks;
     }
+    // Past every branch that can discard the TAL, so this is the first point at which "the TAL was
+    // kept" is true. It sits ahead of the text scan rather than beside the return so that a kept
+    // TAL's issues stay in the order they were in before 0.3.105 — onset, then text.
+    if (onsetWasUnsigned) {
+        logIssue(log, 'TAL_MALFORMED', 'onset-unsigned', region, start, onsetEnd - start, `the onset "${onsetRaw}" has no mandatory sign; the value is unambiguous, so the TAL was ` +
+            'kept and the onset read as positive');
+    }
     const texts = [];
     let runStart = timestampEnd + 1;
     for (let i = runStart; i < bodyEnd; i += 1) {

package/dist/tal/grammar.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.3.104",
+  "version": "0.3.105",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/constants.ts

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.104';
+export const VERSION = '0.3.105';

package/src/tal/grammar.ts

@@ -272,6 +272,13 @@ export function rawBytesText(bytes: Uint8Array, offset: number, length: number):
  * bytes they found — `the onset "??" is not …` — and keying on those would be unbounded. The
  * per-region issue count stays bounded by the number of KINDS, which is what the collapsing
  * exists to protect.
+ *
+ * Keying by kind stops two DIFFERENT TALs from describing each other; it does nothing for one TAL
+ * describing itself twice, which is what `onset-unsigned` did until 0.3.105 — it was logged before
+ * the four branches that can still discard the TAL, so a region could carry two `TAL_MALFORMED`
+ * entries with the same offset, length and raw bytes asserting opposite dispositions. It is now
+ * logged only once the TAL is known to survive, which means its `occurrences` counts SURVIVING
+ * unsigned onsets and its offset is the first surviving one.
  */
 type TalIssueKind =
   | 'text-not-utf8'
@@ -433,6 +440,7 @@ function scanTal(region: Uint8Array, start: number, ordinal: number, log: IssueL
   const onsetRaw = decodeHeaderLatin1(sliceBytes(region, start, onsetEnd - start));
   const signedOnset = parseSignedTicks(onsetRaw);
   let onsetTicks = signedOnset.ticks;
+  let onsetWasUnsigned = false;
   if (!signedOnset.ok) {
     // `parseSignedTicks` fails for a missing sign and for a bad magnitude alike. Only the first
     // is recoverable, and re-parsing without the sign is how they are told apart.
@@ -451,16 +459,11 @@ function scanTal(region: Uint8Array, start: number, ordinal: number, log: IssueL
       return { tal: undefined, next };
     }
     onsetTicks = unsignedOnset.ticks;
-    logIssue(
-      log,
-      'TAL_MALFORMED',
-      'onset-unsigned',
-      region,
-      start,
-      onsetEnd - start,
-      `the onset "${onsetRaw}" has no mandatory sign; the value is unambiguous, so the TAL was ` +
-        'kept and the onset read as positive',
-    );
+    // DEFERRED, not logged here. This is the one "the TAL was kept" message that sits upstream of
+    // a discard branch — four of them, in fact — so an unsigned onset combined with any of them
+    // reported two dispositions of the same TAL, and the one that ran first was the false one.
+    // See the flush below the duration checks (fixed in 0.3.105).
+    onsetWasUnsigned = true;
   }
   if (outsideInt64(onsetTicks)) {
     logIssue(
@@ -531,6 +534,22 @@ function scanTal(region: Uint8Array, start: number, ordinal: number, log: IssueL
     durationTicks = duration.ticks;
   }
 
+  // Past every branch that can discard the TAL, so this is the first point at which "the TAL was
+  // kept" is true. It sits ahead of the text scan rather than beside the return so that a kept
+  // TAL's issues stay in the order they were in before 0.3.105 — onset, then text.
+  if (onsetWasUnsigned) {
+    logIssue(
+      log,
+      'TAL_MALFORMED',
+      'onset-unsigned',
+      region,
+      start,
+      onsetEnd - start,
+      `the onset "${onsetRaw}" has no mandatory sign; the value is unambiguous, so the TAL was ` +
+        'kept and the onset read as positive',
+    );
+  }
+
   const texts: TalText[] = [];
   let runStart = timestampEnd + 1;
   for (let i = runStart; i < bodyEnd; i += 1) {