edfcore 0.3.103 → 0.3.105

package/CHANGELOG.md

@@ -6,6 +6,40 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
 
+## 0.3.105
+
+- **Fixed** a discarded TAL still reporting that it was kept.
+  - The `onset-unsigned` defect — "so the TAL was kept and the onset read as positive" — was logged
+    at the point the missing sign was recovered, which is upstream of the four branches that can
+    still throw the same TAL away: an out-of-range onset, an over-long duration field, a bad
+    duration grammar and an out-of-range duration. An unsigned onset combined with any of them
+    produced two `TAL_MALFORMED` entries about one TAL asserting opposite outcomes, and the one
+    that ran first was the false one. With an out-of-range onset the pair is indistinguishable by
+    anything but prose: same code, same offset, same length, same raw bytes, `occurrences` 1 each.
+  - It is now logged once the TAL is known to survive, ahead of the text scan so a kept TAL's
+    issues keep the order they had. Consequently its `occurrences` counts surviving unsigned
+    onsets, and its offset and raw bytes are the first surviving one's.
+  - 0.3.19 fixed the cross-TAL version of this by keying the log on the defect kind. That stops two
+    different TALs from describing each other and does nothing for one TAL describing itself twice;
+    both guards written for it build two TALs, so they passed throughout. The new guard builds one.
+
+## 0.3.104
+
+- **Fixed** annotation text reaching a diagnostic message unescaped, which let a file forge a
+  detail line inside a genuine `TIMEKEEPING_TAL_NONCONFORMANT` block.
+  - `formatDiagnostics` re-emits a message's continuation lines at the same two-space indent
+    `detail()` uses. Annotation text carrying 0x0a therefore rendered as a line indistinguishable
+    from a `spec:` or `raw:` detail edfcore emitted — visible on stdout through `edfcore validate`.
+    An ESC byte passed through with `color: false`. The TAL grammar reserves only 0x00, 0x14 and
+    0x15, so both bytes reach `annotation.text` unchanged.
+  - This is the class 0.3.2, 0.3.16, 0.3.47 and 0.3.48 were all applied for. The reasoning that
+    retired it argued the message was safe *because* continuation lines are indented — true of the
+    left margin, false of the detail indent, which is the same two spaces. `hostile-text.test.ts`,
+    the guard named for the class, had no case for a message built from file text; it does now, and
+    it asserts the rule (no message carries a control character) rather than one rendering.
+  - `escapeControls` is now exported from `src/tal/grammar.ts`. `previewBytes` escapes for exactly
+    this reason but takes a byte slice; annotation text arrives already decoded.
+
 ## 0.3.103
 
 - **Fixed** a regression 0.3.84 introduced in the `edfcore/node` docblock, which ships in

package/dist/constants.d.ts

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.3.103";
+export declare const VERSION = "0.3.105";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.103';
+export const VERSION = '0.3.105';
 //# sourceMappingURL=constants.js.map

package/dist/tal/annotations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAwVrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAsLtB"}
+{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAkWrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAsLtB"}

package/dist/tal/annotations.js

@@ -35,7 +35,7 @@ import { sliceBytes } from '../bytes/view.js';
 import { TICKS_PER_SECOND } from '../constants.js';
 import { DiagnosticSink } from '../diagnostics/collector.js';
 import { EdfRangeError } from '../errors.js';
-import { parseTalRegion, previewBytes, splitChannelLabel, TAL_PREVIEW_MAX_BYTES, } from './grammar.js';
+import { escapeControls, parseTalRegion, previewBytes, splitChannelLabel, TAL_PREVIEW_MAX_BYTES, } from './grammar.js';
 import { saturateToInt64, ticksToSeconds } from './ticks.js';
 const ANNOTATIONS_SPEC = "EDF+ specification 2.2 (the 'EDF Annotations' signal)";
 const TIMEKEEPING_SPEC = 'EDF+ specification 2.2.1 (time keeping of data records)';
@@ -172,12 +172,21 @@ function timekeepingDefect(tal) {
     // and left this order alone; the test written for it builds a timekeeping TAL with text and NO
     // duration, so the combination stayed uncovered. A writer that merges a scored epoch into the
     // timekeeping TAL writes both (fixed in 0.3.19).
+    // ESCAPED, because this is the one message in the module built from decoded file text rather
+    // than from a byte slice. `previewBytes` escapes for exactly this reason; the text arrives
+    // already decoded, so it needs `escapeControls` directly. Unescaped, a text carrying 0x0a
+    // rendered through `formatDiagnostics` as a continuation line at the same two-space indent
+    // `detail()` uses — a `spec:` or `raw:` line indistinguishable from one edfcore emitted — and a
+    // 0x1b reached stdout with `color: false`. The TAL grammar reserves only 0x00, 0x14 and 0x15,
+    // so both bytes reach `run.text` unchanged (fixed in 0.3.104).
     const texts = tal.texts.map((run) => run.text).filter((text) => text.length > 0);
     if (texts.length > 0) {
-        const strayDuration = tal.durationRaw === undefined ? '' : ` (and the duration "${tal.durationRaw}")`;
+        const strayDuration = tal.durationRaw === undefined
+            ? ''
+            : ` (and the duration "${escapeControls(tal.durationRaw)}")`;
         return {
-            reason: `carries the text ${texts.map((text) => `"${text}"`).join(', ')}${strayDuration}, which ` +
-                'is dropped: the timekeeping TAL is not an annotation',
+            reason: `carries the text ${texts.map((text) => `"${escapeControls(text)}"`).join(', ')}` +
+                `${strayDuration}, which is dropped: the timekeeping TAL is not an annotation`,
             destructive: true,
         };
     }

package/dist/tal/annotations.js.map

@@ -1 +1 @@
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package/dist/tal/grammar.d.ts

@@ -83,6 +83,25 @@ export interface TalTextParts {
 }
 /** Caps the bytes copied into a diagnostic. The full region is one hexdump from `byteOffset`. */
 export declare const TAL_PREVIEW_MAX_BYTES: number;
+/**
+ * Escapes every byte that would otherwise be invisible or would break the line.
+ *
+ * C1 is in scope, not just C0 and DEL. Under Latin-1 the bytes 0x80-0x9F decode to the Unicode C1
+ * controls, which render as nothing — and in cp1252, the encoding that produces them, that block is
+ * the smart quotes, the en and em dash and the ellipsis. It is the single commonest source of an
+ * invalid-UTF-8 annotation, which is to say the main case `ANNOTATION_TEXT_NOT_UTF8` exists for.
+ * Passing it through meant the message's "Bytes at that offset: ..." hid the very byte it was
+ * complaining about: `Wach<0x96>Beginn` printed as `WachBeginn` (fixed in 0.3.66).
+ *
+ * 0xA0-0xFF stay literal. Those are printable in Latin-1 and é must remain readable — that is the
+ * reason the preview decodes as Latin-1 in the first place. The rule below 0xA0 now matches
+ * `quote()` in `diagnostics/format.ts`, which escapes anything non-printable.
+ *
+ * Exported because a message can carry decoded text as well as raw bytes: the timekeeping-TAL
+ * defect quotes `annotation.text`, which is decoded rather than sliced and so cannot go through
+ * `previewBytes` (fixed in 0.3.104).
+ */
+export declare function escapeControls(text: string): string;
 /**
  * Bytes as a short, escaped, single-line string for a diagnostic message.
  *

package/dist/tal/grammar.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"grammar.d.ts","sourceRoot":"","sources":["../../src/tal/grammar.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AAWH,MAAM,MAAM,eAAe,GAAG,OAAO,GAAG,kBAAkB,CAAC;AAE3D,6EAA6E;AAC7E,MAAM,WAAW,OAAO;IACtB,oFAAoF;IACpF,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,QAAQ,EAAE,eAAe,CAAC;IACnC,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;CAC7B;AAED,uEAAuE;AACvE,MAAM,MAAM,YAAY,GACpB,eAAe,GACf,6BAA6B,GAC7B,+BAA+B,GAC/B,0BAA0B,CAAC;AAE/B;;;;;GAKG;AACH,MAAM,WAAW,QAAQ;IACvB,QAAQ,CAAC,IAAI,EAAE,YAAY,CAAC;IAC5B,6DAA6D;IAC7D,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,+DAA+D;IAC/D,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IACxB,uFAAuF;IACvF,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,kGAAkG;IAClG,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;CAC1B;AAED,gGAAgG;AAChG,MAAM,WAAW,SAAS;IACxB;;;;OAIG;IACH,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,qCAAqC;IACrC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,WAAW,EAAE,MAAM,GAAG,SAAS,CAAC;IACzC,QAAQ,CAAC,aAAa,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3C,QAAQ,CAAC,KAAK,EAAE,SAAS,OAAO,EAAE,CAAC;CACpC;AAED,MAAM,WAAW,cAAc;IAC7B,QAAQ,CAAC,IAAI,EAAE,SAAS,SAAS,EAAE,CAAC;IACpC,QAAQ,CAAC,MAAM,EAAE,SAAS,QAAQ,EAAE,CAAC;CACtC;AAED,oEAAoE;AACpE,MAAM,WAAW,YAAY;IAC3B,+EAA+E;IAC/E,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,YAAY,EAAE,MAAM,GAAG,SAAS,CAAC;CAC3C;AAED,iGAAiG;AACjG,eAAO,MAAM,qBAAqB,EAAE,MAAW,CAAC;AA6FhD;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAUnD;AAED;;;;;GAKG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAItF;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAGtF;AA6VD;;;;;;;;;GASG;AACH,wBAAgB,cAAc,CAC5B,KAAK,EAAE,UAAU,EACjB,WAAW,EAAE,MAAM,EACnB,WAAW,EAAE,MAAM,GAClB,cAAc,CAmChB;AAED;;;;;;;GAOG;AACH,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,GAAG,YAAY,CAM3D"}

package/dist/tal/grammar.js

@@ -96,8 +96,12 @@ const C1_LAST = 0x9f;
  * 0xA0-0xFF stay literal. Those are printable in Latin-1 and é must remain readable — that is the
  * reason the preview decodes as Latin-1 in the first place. The rule below 0xA0 now matches
  * `quote()` in `diagnostics/format.ts`, which escapes anything non-printable.
+ *
+ * Exported because a message can carry decoded text as well as raw bytes: the timekeeping-TAL
+ * defect quotes `annotation.text`, which is decoded rather than sliced and so cannot go through
+ * `previewBytes` (fixed in 0.3.104).
  */
-function escapeControls(text) {
+export function escapeControls(text) {
     let out = '';
     for (let i = 0; i < text.length; i += 1) {
         const code = text.charCodeAt(i);
@@ -231,6 +235,7 @@ function scanTal(region, start, ordinal, log) {
     const onsetRaw = decodeHeaderLatin1(sliceBytes(region, start, onsetEnd - start));
     const signedOnset = parseSignedTicks(onsetRaw);
     let onsetTicks = signedOnset.ticks;
+    let onsetWasUnsigned = false;
     if (!signedOnset.ok) {
         // `parseSignedTicks` fails for a missing sign and for a bad magnitude alike. Only the first
         // is recoverable, and re-parsing without the sign is how they are told apart.
@@ -241,8 +246,11 @@ function scanTal(region, start, ordinal, log) {
             return { tal: undefined, next };
         }
         onsetTicks = unsignedOnset.ticks;
-        logIssue(log, 'TAL_MALFORMED', 'onset-unsigned', region, start, onsetEnd - start, `the onset "${onsetRaw}" has no mandatory sign; the value is unambiguous, so the TAL was ` +
-            'kept and the onset read as positive');
+        // DEFERRED, not logged here. This is the one "the TAL was kept" message that sits upstream of
+        // a discard branch — four of them, in fact — so an unsigned onset combined with any of them
+        // reported two dispositions of the same TAL, and the one that ran first was the false one.
+        // See the flush below the duration checks (fixed in 0.3.105).
+        onsetWasUnsigned = true;
     }
     if (outsideInt64(onsetTicks)) {
         logIssue(log, 'TAL_MALFORMED', 'onset-out-of-range', region, start, onsetEnd - start, `the onset "${onsetRaw}" is outside the +/-2^63 tick range edfcore can represent, so the ` +
@@ -279,6 +287,13 @@ function scanTal(region, start, ordinal, log) {
         }
         durationTicks = duration.ticks;
     }
+    // Past every branch that can discard the TAL, so this is the first point at which "the TAL was
+    // kept" is true. It sits ahead of the text scan rather than beside the return so that a kept
+    // TAL's issues stay in the order they were in before 0.3.105 — onset, then text.
+    if (onsetWasUnsigned) {
+        logIssue(log, 'TAL_MALFORMED', 'onset-unsigned', region, start, onsetEnd - start, `the onset "${onsetRaw}" has no mandatory sign; the value is unambiguous, so the TAL was ` +
+            'kept and the onset read as positive');
+    }
     const texts = [];
     let runStart = timestampEnd + 1;
     for (let i = runStart; i < bodyEnd; i += 1) {

package/dist/tal/grammar.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.3.103",
+  "version": "0.3.105",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/constants.ts

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.3.103';
+export const VERSION = '0.3.105';

package/src/tal/annotations.ts

@@ -45,6 +45,7 @@ import type {
   RecordRange,
 } from '../types.js';
 import {
+  escapeControls,
   type ParsedTal,
   parseTalRegion,
   previewBytes,
@@ -286,14 +287,23 @@ function timekeepingDefect(tal: ParsedTal): TimekeepingDefect | undefined {
   // and left this order alone; the test written for it builds a timekeeping TAL with text and NO
   // duration, so the combination stayed uncovered. A writer that merges a scored epoch into the
   // timekeeping TAL writes both (fixed in 0.3.19).
+  // ESCAPED, because this is the one message in the module built from decoded file text rather
+  // than from a byte slice. `previewBytes` escapes for exactly this reason; the text arrives
+  // already decoded, so it needs `escapeControls` directly. Unescaped, a text carrying 0x0a
+  // rendered through `formatDiagnostics` as a continuation line at the same two-space indent
+  // `detail()` uses — a `spec:` or `raw:` line indistinguishable from one edfcore emitted — and a
+  // 0x1b reached stdout with `color: false`. The TAL grammar reserves only 0x00, 0x14 and 0x15,
+  // so both bytes reach `run.text` unchanged (fixed in 0.3.104).
   const texts = tal.texts.map((run) => run.text).filter((text) => text.length > 0);
   if (texts.length > 0) {
     const strayDuration =
-      tal.durationRaw === undefined ? '' : ` (and the duration "${tal.durationRaw}")`;
+      tal.durationRaw === undefined
+        ? ''
+        : ` (and the duration "${escapeControls(tal.durationRaw)}")`;
     return {
       reason:
-        `carries the text ${texts.map((text) => `"${text}"`).join(', ')}${strayDuration}, which ` +
-        'is dropped: the timekeeping TAL is not an annotation',
+        `carries the text ${texts.map((text) => `"${escapeControls(text)}"`).join(', ')}` +
+        `${strayDuration}, which is dropped: the timekeeping TAL is not an annotation`,
       destructive: true,
     };
   }

package/src/tal/grammar.ts

@@ -209,8 +209,12 @@ const C1_LAST = 0x9f;
  * 0xA0-0xFF stay literal. Those are printable in Latin-1 and é must remain readable — that is the
  * reason the preview decodes as Latin-1 in the first place. The rule below 0xA0 now matches
  * `quote()` in `diagnostics/format.ts`, which escapes anything non-printable.
+ *
+ * Exported because a message can carry decoded text as well as raw bytes: the timekeeping-TAL
+ * defect quotes `annotation.text`, which is decoded rather than sliced and so cannot go through
+ * `previewBytes` (fixed in 0.3.104).
  */
-function escapeControls(text: string): string {
+export function escapeControls(text: string): string {
   let out = '';
   for (let i = 0; i < text.length; i += 1) {
     const code = text.charCodeAt(i);
@@ -268,6 +272,13 @@ export function rawBytesText(bytes: Uint8Array, offset: number, length: number):
  * bytes they found — `the onset "??" is not …` — and keying on those would be unbounded. The
  * per-region issue count stays bounded by the number of KINDS, which is what the collapsing
  * exists to protect.
+ *
+ * Keying by kind stops two DIFFERENT TALs from describing each other; it does nothing for one TAL
+ * describing itself twice, which is what `onset-unsigned` did until 0.3.105 — it was logged before
+ * the four branches that can still discard the TAL, so a region could carry two `TAL_MALFORMED`
+ * entries with the same offset, length and raw bytes asserting opposite dispositions. It is now
+ * logged only once the TAL is known to survive, which means its `occurrences` counts SURVIVING
+ * unsigned onsets and its offset is the first surviving one.
  */
 type TalIssueKind =
   | 'text-not-utf8'
@@ -429,6 +440,7 @@ function scanTal(region: Uint8Array, start: number, ordinal: number, log: IssueL
   const onsetRaw = decodeHeaderLatin1(sliceBytes(region, start, onsetEnd - start));
   const signedOnset = parseSignedTicks(onsetRaw);
   let onsetTicks = signedOnset.ticks;
+  let onsetWasUnsigned = false;
   if (!signedOnset.ok) {
     // `parseSignedTicks` fails for a missing sign and for a bad magnitude alike. Only the first
     // is recoverable, and re-parsing without the sign is how they are told apart.
@@ -447,16 +459,11 @@ function scanTal(region: Uint8Array, start: number, ordinal: number, log: IssueL
       return { tal: undefined, next };
     }
     onsetTicks = unsignedOnset.ticks;
-    logIssue(
-      log,
-      'TAL_MALFORMED',
-      'onset-unsigned',
-      region,
-      start,
-      onsetEnd - start,
-      `the onset "${onsetRaw}" has no mandatory sign; the value is unambiguous, so the TAL was ` +
-        'kept and the onset read as positive',
-    );
+    // DEFERRED, not logged here. This is the one "the TAL was kept" message that sits upstream of
+    // a discard branch — four of them, in fact — so an unsigned onset combined with any of them
+    // reported two dispositions of the same TAL, and the one that ran first was the false one.
+    // See the flush below the duration checks (fixed in 0.3.105).
+    onsetWasUnsigned = true;
   }
   if (outsideInt64(onsetTicks)) {
     logIssue(
@@ -527,6 +534,22 @@ function scanTal(region: Uint8Array, start: number, ordinal: number, log: IssueL
     durationTicks = duration.ticks;
   }
 
+  // Past every branch that can discard the TAL, so this is the first point at which "the TAL was
+  // kept" is true. It sits ahead of the text scan rather than beside the return so that a kept
+  // TAL's issues stay in the order they were in before 0.3.105 — onset, then text.
+  if (onsetWasUnsigned) {
+    logIssue(
+      log,
+      'TAL_MALFORMED',
+      'onset-unsigned',
+      region,
+      start,
+      onsetEnd - start,
+      `the onset "${onsetRaw}" has no mandatory sign; the value is unambiguous, so the TAL was ` +
+        'kept and the onset read as positive',
+    );
+  }
+
   const texts: TalText[] = [];
   let runStart = timestampEnd + 1;
   for (let i = runStart; i < bodyEnd; i += 1) {