npm - edfcore - Versions diffs - 0.2.9 → 0.2.10 - Mend

edfcore 0.2.9 → 0.2.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (19) hide show

package/CHANGELOG.md +14 -0
package/dist/annotations-query.d.ts +8 -1
package/dist/annotations-query.d.ts.map +1 -1
package/dist/annotations-query.js +10 -3
package/dist/annotations-query.js.map +1 -1
package/dist/constants.d.ts +1 -1
package/dist/constants.d.ts.map +1 -1
package/dist/constants.js +1 -1
package/dist/constants.js.map +1 -1
package/dist/tal/annotations.d.ts.map +1 -1
package/dist/tal/annotations.js +4 -0
package/dist/tal/annotations.js.map +1 -1
package/dist/types.d.ts +15 -1
package/dist/types.d.ts.map +1 -1
package/package.json +1 -1
package/src/annotations-query.ts +10 -3
package/src/constants.ts +1 -1
package/src/tal/annotations.ts +4 -0
package/src/types.ts +15 -1

package/CHANGELOG.md CHANGED Viewed

@@ -6,6 +6,20 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
+## 0.2.10
+- **Fixed** `filterAnnotationsByTime` and `annotationsAt` answering on the header's timebase while
+  every read answers on the recording's. EDF+ lets a file put its sub-second start offset in
+  record 0's timekeeping TAL; `onsetTicks` is the number the file wrote, and `readWindow` puts
+  `t = 0` at the start of record 0. The two are identical on a file with no offset and up to a
+  second apart on one that declares an offset, so `readWindow` and `filterAnnotationsByTime` — the
+  pair that answers "the events in the window I just read" — disagreed on exactly the files
+  careful enough to state their offset. Events landed in the neighbouring window, and one near the
+  end landed in no window at all.
+- **Added** `EdfAnnotation.onsetTicksFromFirstRecord`: `onsetSecondsFromFirstRecord` without the
+  float. Only the header-axis form was exact, so a caller comparing on the axis the rest of the
+  package uses had nothing exact to compare with. This is what the two queries above now use.
 ## 0.2.9
 - **Added** `physicalRangeOf(signal)`, the declared physical bounds in ascending order.

package/dist/annotations-query.d.ts CHANGED Viewed

@@ -9,7 +9,14 @@
  * `a.onsetSecondsFromFirstRecord >= from && ... < to`, and those are float64 seconds converted
  * from exact tick counts. An onset stored as `+30.0000001` and a bound of `30.0000001` need not
  * compare equal once both have been through a division by 10,000,000. Every comparison here is on
- * `onsetTicks`, which is exact, and the bounds are converted to ticks once.
+ * ticks, which are exact, and the bounds are converted to ticks once.
+ *
+ * The ticks compared are `onsetTicksFromFirstRecord`, not `onsetTicks`. The window is in the same
+ * seconds `resolveTimeWindow` and `readWindow` take, and those put `t = 0` at the start of record
+ * 0; `onsetTicks` is on the header's timebase, which sits up to a second earlier when the file
+ * declares a sub-second start offset in record 0's timekeeping TAL. Comparing against the wrong
+ * one puts events in the neighbouring window on exactly the files that bother to state their
+ * offset.
  */
 import type { EdfAnnotation, EdfAnnotationWindow } from './types.js';
 /**

package/dist/annotations-query.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"annotations-query.d.ts","sourceRoot":"","sources":["../src/annotations-query.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;GAmBG;AAGH,OAAO,KAAK,EAAE,aAAa,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAErE;;;;;;;GAOG;AACH,wBAAgB,uBAAuB,CACrC,WAAW,EAAE,SAAS,aAAa,EAAE,EACrC,MAAM,EAAE,mBAAmB,GAC1B,SAAS,aAAa,EAAE,CAe1B;AAED;;;;;;;GAOG;AACH,wBAAgB,uBAAuB,CACrC,WAAW,EAAE,SAAS,aAAa,EAAE,EACrC,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC,GACnD,SAAS,aAAa,EAAE,CAQ1B;AAED;;;;;GAKG;AACH,wBAAgB,sBAAsB,CACpC,WAAW,EAAE,SAAS,aAAa,EAAE,GACpC,aAAa,CAAC;IAAE,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAQlE;AAED;;;;;;;;GAQG;AACH,wBAAgB,aAAa,CAC3B,WAAW,EAAE,SAAS,aAAa,EAAE,EACrC,OAAO,EAAE,MAAM,GACd,SAAS,aAAa,EAAE,CAS1B"}

package/dist/annotations-query.js CHANGED Viewed

@@ -9,7 +9,14 @@
  * `a.onsetSecondsFromFirstRecord >= from && ... < to`, and those are float64 seconds converted
  * from exact tick counts. An onset stored as `+30.0000001` and a bound of `30.0000001` need not
  * compare equal once both have been through a division by 10,000,000. Every comparison here is on
- * `onsetTicks`, which is exact, and the bounds are converted to ticks once.
+ * ticks, which are exact, and the bounds are converted to ticks once.
+ *
+ * The ticks compared are `onsetTicksFromFirstRecord`, not `onsetTicks`. The window is in the same
+ * seconds `resolveTimeWindow` and `readWindow` take, and those put `t = 0` at the start of record
+ * 0; `onsetTicks` is on the header's timebase, which sits up to a second earlier when the file
+ * declares a sub-second start offset in record 0's timekeeping TAL. Comparing against the wrong
+ * one puts events in the neighbouring window on exactly the files that bother to state their
+ * offset.
  */
 import { secondsToTicks } from './tal/ticks.js';
 /**
@@ -26,7 +33,7 @@ export function filterAnnotationsByTime(annotations, window) {
     if (to <= from)
         return Object.freeze([]);
     return Object.freeze(annotations.filter((annotation) => {
-        const onset = annotation.onsetTicks;
+        const onset = annotation.onsetTicksFromFirstRecord;
         const end = onset + (annotation.durationTicks ?? 0n);
         // Half-open on both sides: [onset, end) against [from, to).
         return (onset < to && (end > from || (annotation.durationTicks === undefined && onset >= from)));
@@ -73,7 +80,7 @@ export function countAnnotationsByText(annotations) {
 export function annotationsAt(annotations, seconds) {
     const at = secondsToTicks(seconds);
     return Object.freeze(annotations.filter((annotation) => {
-        const onset = annotation.onsetTicks;
+        const onset = annotation.onsetTicksFromFirstRecord;
         const duration = annotation.durationTicks ?? 0n;
         return duration === 0n ? onset === at : onset <= at && at < onset + duration;
     }));

package/dist/annotations-query.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/constants.d.ts CHANGED Viewed

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.2.9";
+export declare const VERSION = "0.2.10";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/constants.js CHANGED Viewed

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.2.9';
+export const VERSION = '0.2.10';
 //# sourceMappingURL=constants.js.map

package/dist/constants.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/tal/annotations.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/tal/annotations.js CHANGED Viewed

@@ -340,6 +340,10 @@ export function decodeAnnotations(header, recordBytes, records, options) {
         onsetSecondsFromHeaderStart: ticksToSeconds(item.onsetTicks),
         onsetSecondsFromFirstRecord: ticksToSeconds(item.onsetTicks - startOffsetTicks),
         onsetTicks: item.onsetTicks,
+        // The exact form of the line above. Saturating rather than wrapping, for the same reason
+        // record onsets do: an onset already at the edge of the int64 range must not come back as a
+        // large positive number after a subtraction.
+        onsetTicksFromFirstRecord: saturateToInt64(item.onsetTicks - startOffsetTicks),
         onsetRaw: item.onsetRaw,
         durationSeconds: item.durationTicks === undefined ? undefined : ticksToSeconds(item.durationTicks),
         durationTicks: item.durationTicks,

package/dist/tal/annotations.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/types.d.ts CHANGED Viewed

@@ -409,8 +409,22 @@ export interface EdfAnnotation {
     readonly onsetSecondsFromHeaderStart: number;
     /** Rebased to the first record's true start — the EDFlib/pyEDFlib/MNE convention. */
     readonly onsetSecondsFromFirstRecord: number;
-    /** Exact, in 100 ns units. Compare event times with this, never with the floats. */
+    /**
+     * Exact, in 100 ns units, on the HEADER's timebase — the number the file wrote, unrebased.
+     *
+     * This is the right field for comparing one annotation against another, and the wrong one for
+     * comparing an annotation against a window: `resolveTimeWindow`, `readWindow` and `readEnvelope`
+     * all put `t = 0` at the start of record 0, which is `onsetTicksFromFirstRecord`.
+     */
     readonly onsetTicks: bigint;
+    /**
+     * Exact, in 100 ns units, on the same axis as every read in the package: `t = 0` is the start of
+     * record 0. This is `onsetSecondsFromFirstRecord` without the float.
+     *
+     * It differs from `onsetTicks` by the sub-second start offset a file may declare in record 0's
+     * timekeeping TAL, so the two are equal on most files and up to a second apart on some.
+     */
+    readonly onsetTicksFromFirstRecord: bigint;
     /** The original digits, so precision is never lost to a round-trip. */
     readonly onsetRaw: string;
     readonly durationSeconds: number | undefined;

package/dist/types.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.2.9",
+  "version": "0.2.10",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/annotations-query.ts CHANGED Viewed

@@ -9,7 +9,14 @@
  * `a.onsetSecondsFromFirstRecord >= from && ... < to`, and those are float64 seconds converted
  * from exact tick counts. An onset stored as `+30.0000001` and a bound of `30.0000001` need not
  * compare equal once both have been through a division by 10,000,000. Every comparison here is on
- * `onsetTicks`, which is exact, and the bounds are converted to ticks once.
+ * ticks, which are exact, and the bounds are converted to ticks once.
+ *
+ * The ticks compared are `onsetTicksFromFirstRecord`, not `onsetTicks`. The window is in the same
+ * seconds `resolveTimeWindow` and `readWindow` take, and those put `t = 0` at the start of record
+ * 0; `onsetTicks` is on the header's timebase, which sits up to a second earlier when the file
+ * declares a sub-second start offset in record 0's timekeeping TAL. Comparing against the wrong
+ * one puts events in the neighbouring window on exactly the files that bother to state their
+ * offset.
  */
 import { secondsToTicks } from './tal/ticks.js';
@@ -33,7 +40,7 @@ export function filterAnnotationsByTime(
   return Object.freeze(
     annotations.filter((annotation) => {
-      const onset = annotation.onsetTicks;
+      const onset = annotation.onsetTicksFromFirstRecord;
       const end = onset + (annotation.durationTicks ?? 0n);
       // Half-open on both sides: [onset, end) against [from, to).
       return (
@@ -98,7 +105,7 @@ export function annotationsAt(
   const at = secondsToTicks(seconds);
   return Object.freeze(
     annotations.filter((annotation) => {
-      const onset = annotation.onsetTicks;
+      const onset = annotation.onsetTicksFromFirstRecord;
       const duration = annotation.durationTicks ?? 0n;
       return duration === 0n ? onset === at : onset <= at && at < onset + duration;
     }),

package/src/constants.ts CHANGED Viewed

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.2.9';
+export const VERSION = '0.2.10';

package/src/tal/annotations.ts CHANGED Viewed

@@ -463,6 +463,10 @@ export function decodeAnnotations(
     onsetSecondsFromHeaderStart: ticksToSeconds(item.onsetTicks),
     onsetSecondsFromFirstRecord: ticksToSeconds(item.onsetTicks - startOffsetTicks),
     onsetTicks: item.onsetTicks,
+    // The exact form of the line above. Saturating rather than wrapping, for the same reason
+    // record onsets do: an onset already at the edge of the int64 range must not come back as a
+    // large positive number after a subtraction.
+    onsetTicksFromFirstRecord: saturateToInt64(item.onsetTicks - startOffsetTicks),
     onsetRaw: item.onsetRaw,
     durationSeconds:
       item.durationTicks === undefined ? undefined : ticksToSeconds(item.durationTicks),

package/src/types.ts CHANGED Viewed

@@ -481,8 +481,22 @@ export interface EdfAnnotation {
   readonly onsetSecondsFromHeaderStart: number;
   /** Rebased to the first record's true start — the EDFlib/pyEDFlib/MNE convention. */
   readonly onsetSecondsFromFirstRecord: number;
-  /** Exact, in 100 ns units. Compare event times with this, never with the floats. */
+  /**
+   * Exact, in 100 ns units, on the HEADER's timebase — the number the file wrote, unrebased.
+   *
+   * This is the right field for comparing one annotation against another, and the wrong one for
+   * comparing an annotation against a window: `resolveTimeWindow`, `readWindow` and `readEnvelope`
+   * all put `t = 0` at the start of record 0, which is `onsetTicksFromFirstRecord`.
+   */
   readonly onsetTicks: bigint;
+  /**
+   * Exact, in 100 ns units, on the same axis as every read in the package: `t = 0` is the start of
+   * record 0. This is `onsetSecondsFromFirstRecord` without the float.
+   *
+   * It differs from `onsetTicks` by the sub-second start offset a file may declare in record 0's
+   * timekeeping TAL, so the two are equal on most files and up to a second apart on some.
+   */
+  readonly onsetTicksFromFirstRecord: bigint;
   /** The original digits, so precision is never lost to a round-trip. */
   readonly onsetRaw: string;
   readonly durationSeconds: number | undefined;