edfcore 0.2.6 → 0.2.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/CHANGELOG.md CHANGED
@@ -6,6 +6,12 @@ alone does not tell you whether you were affected.
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  edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
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  defect; those are called out below.
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+ ## 0.2.7
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+
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+ - **Added** `edfcore gaps <file>`. Runs a full scan rather than reading the two probes `openEdf`
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+ makes: a probed index cannot see a gap in the middle, so reporting "none" from it would be a
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+ claim nobody verified.
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+
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  ## 0.2.6
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  - **Added** `annotationsAt(annotations, seconds)` — the instant form a cursor needs.
@@ -1 +1 @@
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- {"version":3,"file":"cli-run.d.ts","sourceRoot":"","sources":["../src/cli-run.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAWH,iDAAiD;AACjD,MAAM,WAAW,KAAK;IACpB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;IAC5C,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AAmBD,MAAM,WAAW,IAAI;IACnB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IAClC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;CACpC;AAED,wBAAgB,SAAS,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,CAsBvD;AAQD,wBAAsB,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CA2GnE"}
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+ {"version":3,"file":"cli-run.d.ts","sourceRoot":"","sources":["../src/cli-run.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAYH,iDAAiD;AACjD,MAAM,WAAW,KAAK;IACpB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;IAC5C,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AAoBD,MAAM,WAAW,IAAI;IACnB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IAClC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;CACpC;AAED,wBAAgB,SAAS,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,CAsBvD;AAQD,wBAAsB,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CA8HnE"}
package/dist/cli-run.js CHANGED
@@ -12,6 +12,7 @@ import { formatDiagnostics } from './diagnostics/format.js';
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  import { formatHeader } from './format-header.js';
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  import { formatValidationReport } from './format-report.js';
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  import { byteSource } from './io/bytes.js';
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+ import { buildRecordIndex } from './record-index.js';
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  import { openEdf, readAnnotations } from './recording.js';
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  import { validateRecording } from './validate.js';
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  const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
@@ -19,6 +20,7 @@ const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
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  npx edfcore header <file> the header, the signals, and any diagnostics
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  npx edfcore validate <file> a full conformance sweep, scanning every sample
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  npx edfcore events <file> the annotations, counted by text
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+ npx edfcore gaps <file> the discontinuities, after a full scan
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  npx edfcore signals <file> one line per signal, for grep and awk
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  npx edfcore json <file> the header as JSON, for piping into jq
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@@ -108,6 +110,22 @@ export async function runCli(args, io) {
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  }
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  return 0;
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  }
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+ case 'gaps': {
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+ const recording = await open(io, file);
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+ // A full scan, not the two probes openEdf makes: the probed index cannot see a gap in the
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+ // middle, and reporting "none" from it would be a claim nobody verified.
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+ const index = await buildRecordIndex(recording);
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+ const gaps = index.gaps ?? [];
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+ if (gaps.length === 0) {
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+ io.out(`no gaps in ${index.recordCount} records\n`);
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+ return 0;
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+ }
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+ io.out(`${gaps.length} gap(s) in ${index.recordCount} records\n\n`);
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+ for (const gap of gaps) {
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+ io.out(`after segment ${gap.beforeSegmentIndex}\t${gap.startSeconds}s..${gap.endSeconds}s\t+${gap.durationSeconds}s\n`);
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+ }
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+ return 0;
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+ }
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  case 'signals': {
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  // Tab-separated and one line per signal: `header` is for reading, this is for piping.
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  const recording = await open(io, file);
@@ -1 +1 @@
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1
+ 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@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
109
109
  readonly reserved: 224;
110
110
  };
111
111
  /** Published package version. Kept in sync with package.json by a test. */
112
- export declare const VERSION = "0.2.6";
112
+ export declare const VERSION = "0.2.7";
113
113
  //# sourceMappingURL=constants.d.ts.map
package/dist/constants.js CHANGED
@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
79
79
  reserved: 224,
80
80
  };
81
81
  /** Published package version. Kept in sync with package.json by a test. */
82
- export const VERSION = '0.2.6';
82
+ export const VERSION = '0.2.7';
83
83
  //# sourceMappingURL=constants.js.map
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "edfcore",
3
- "version": "0.2.6",
3
+ "version": "0.2.7",
4
4
  "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
5
5
  "keywords": [
6
6
  "edf",
package/src/cli-run.ts CHANGED
@@ -13,6 +13,7 @@ import { formatDiagnostics } from './diagnostics/format.js';
13
13
  import { formatHeader } from './format-header.js';
14
14
  import { formatValidationReport } from './format-report.js';
15
15
  import { byteSource } from './io/bytes.js';
16
+ import { buildRecordIndex } from './record-index.js';
16
17
  import { openEdf, readAnnotations } from './recording.js';
17
18
  import { validateRecording } from './validate.js';
18
19
 
@@ -28,6 +29,7 @@ const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
28
29
  npx edfcore header <file> the header, the signals, and any diagnostics
29
30
  npx edfcore validate <file> a full conformance sweep, scanning every sample
30
31
  npx edfcore events <file> the annotations, counted by text
32
+ npx edfcore gaps <file> the discontinuities, after a full scan
31
33
  npx edfcore signals <file> one line per signal, for grep and awk
32
34
  npx edfcore json <file> the header as JSON, for piping into jq
33
35
 
@@ -134,6 +136,25 @@ export async function runCli(args: Args, io: CliIo): Promise<number> {
134
136
  return 0;
135
137
  }
136
138
 
139
+ case 'gaps': {
140
+ const recording = await open(io, file);
141
+ // A full scan, not the two probes openEdf makes: the probed index cannot see a gap in the
142
+ // middle, and reporting "none" from it would be a claim nobody verified.
143
+ const index = await buildRecordIndex(recording);
144
+ const gaps = index.gaps ?? [];
145
+ if (gaps.length === 0) {
146
+ io.out(`no gaps in ${index.recordCount} records\n`);
147
+ return 0;
148
+ }
149
+ io.out(`${gaps.length} gap(s) in ${index.recordCount} records\n\n`);
150
+ for (const gap of gaps) {
151
+ io.out(
152
+ `after segment ${gap.beforeSegmentIndex}\t${gap.startSeconds}s..${gap.endSeconds}s\t+${gap.durationSeconds}s\n`,
153
+ );
154
+ }
155
+ return 0;
156
+ }
157
+
137
158
  case 'signals': {
138
159
  // Tab-separated and one line per signal: `header` is for reading, this is for piping.
139
160
  const recording = await open(io, file);
package/src/constants.ts CHANGED
@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
93
93
  } as const;
94
94
 
95
95
  /** Published package version. Kept in sync with package.json by a test. */
96
- export const VERSION = '0.2.6';
96
+ export const VERSION = '0.2.7';