edfcore 0.2.37 → 0.2.39

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Files changed (13) hide show
  1. package/CHANGELOG.md +18 -0
  2. package/dist/constants.d.ts +1 -1
  3. package/dist/constants.js +1 -1
  4. package/dist/node.d.ts.map +1 -1
  5. package/dist/node.js +6 -0
  6. package/dist/node.js.map +1 -1
  7. package/dist/tal/annotations.d.ts.map +1 -1
  8. package/dist/tal/annotations.js +26 -19
  9. package/dist/tal/annotations.js.map +1 -1
  10. package/package.json +1 -1
  11. package/src/constants.ts +1 -1
  12. package/src/node.ts +6 -0
  13. package/src/tal/annotations.ts +27 -20
package/CHANGELOG.md CHANGED
@@ -6,6 +6,24 @@ alone does not tell you whether you were affected.
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  edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
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  defect; those are called out below.
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+ ## 0.2.38
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+
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+ - **Fixed** `onsetSecondsFromFirstRecord` and `onsetTicksFromFirstRecord` disagreeing about the
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+ same event at the edge of the int64 tick range. The exact field saturated and the float field was
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+ computed from the unsaturated difference, so one annotation reported 1,844,674,407,370.955 s in
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+ one field and 922,337,203,685.4775 s in the other — a factor of two. My own inconsistency, added
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+ with the exact field in 0.2.10. Both are now derived from one rebased value, which is what the
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+ float field was always documented to be: the lossy view of the exact one.
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+
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+ ## 0.2.37
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+
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+ - **Fixed** `fileHandleSource` and `fileSource` ignoring an abort signal that flipped while a read
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+ was in flight. The abort check ran at the top of each loop iteration, and the common case is one
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+ syscall that returns everything — so the check ran once, before it, and a caller who gave up
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+ during the read got the data anyway. `blobSource` has always re-checked after its await, with a
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+ test saying why; one adapter honouring a signal that another quietly ignores is worse than either
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+ rule alone.
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+
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  ## 0.2.36
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  - **Fixed** `cachedSource` repopulating itself after `close()`. A read already in flight when close
package/dist/constants.d.ts CHANGED
@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
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  readonly reserved: 224;
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export declare const VERSION = "0.2.37";
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+ export declare const VERSION = "0.2.39";
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  //# sourceMappingURL=constants.d.ts.map
package/dist/constants.js CHANGED
@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
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  reserved: 224,
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export const VERSION = '0.2.37';
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+ export const VERSION = '0.2.39';
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  //# sourceMappingURL=constants.js.map
package/dist/node.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"node.d.ts","sourceRoot":"","sources":["../src/node.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;AAOH,OAAO,KAAK,EAAE,UAAU,EAAe,MAAM,YAAY,CAAC;AAE1D;;;;;GAKG;AACH,MAAM,WAAW,cAAc;IAC7B,IAAI,CACF,MAAM,EAAE,UAAU,EAClB,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC;QAAE,SAAS,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAClC,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;CACxB;AAYD;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,cAAc,EAAE,UAAU,EAAE,MAAM,GAAG,UAAU,CA0BvF;AAED;;;;;;;;;GASG;AACH,wBAAsB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAqBlE"}
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+ {"version":3,"file":"node.d.ts","sourceRoot":"","sources":["../src/node.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;AAOH,OAAO,KAAK,EAAE,UAAU,EAAe,MAAM,YAAY,CAAC;AAE1D;;;;;GAKG;AACH,MAAM,WAAW,cAAc;IAC7B,IAAI,CACF,MAAM,EAAE,UAAU,EAClB,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC;QAAE,SAAS,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAClC,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;CACxB;AAYD;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,cAAc,EAAE,UAAU,EAAE,MAAM,GAAG,UAAU,CAgCvF;AAED;;;;;;;;;GASG;AACH,wBAAsB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAqBlE"}
package/dist/node.js CHANGED
@@ -69,6 +69,12 @@ export function fileHandleSource(handle, byteLength) {
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  break;
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  filled += bytesRead;
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  }
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+ // Checked again AFTER the syscalls, not only before each one. The common case is a single
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+ // read that returns everything, so the loop's check ran once, before it — and a signal that
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+ // flipped while the syscall was in flight was ignored and the data returned anyway.
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+ // `blobSource` has always rejected in that situation, and one adapter honouring a signal
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+ // that another quietly ignores is worse than either rule on its own.
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+ throwIfAborted(options);
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  return assertExactRead(buffer.subarray(0, filled), offset, length);
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  },
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  async close() {
package/dist/node.js.map CHANGED
@@ -1 +1 @@
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+ {"version":3,"file":"node.js","sourceRoot":"","sources":["../src/node.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;AAEH,4FAA4F;AAC5F,2FAA2F;AAC3F,OAAO,KAAK,cAAc,MAAM,kBAAkB,CAAC;AACnD,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAC7C,OAAO,EAAE,eAAe,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AA2BlF,MAAM,EAAE,GAAmB,cAA2C,CAAC;AAEvE;;;;;;;;;;;GAWG;AACH,MAAM,UAAU,gBAAgB,CAAC,MAAsB,EAAE,UAAkB;IACzE,OAAO;QACL,UAAU;QACV,KAAK,CAAC,IAAI,CAAC,MAAc,EAAE,MAAc,EAAE,OAAqB;YAC9D,cAAc,CAAC,OAAO,CAAC,CAAC;YACxB,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,UAAU,CAAC,CAAC;YAC5C,IAAI,MAAM,KAAK,CAAC;gBAAE,OAAO,IAAI,UAAU,CAAC,CAAC,CAAC,CAAC;YAE3C,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,MAAM,CAAC,CAAC;YACtC,IAAI,MAAM,GAAG,CAAC,CAAC;YACf,OAAO,MAAM,GAAG,MAAM,EAAE,CAAC;gBACvB,cAAc,CAAC,OAAO,CAAC,CAAC;gBACxB,wFAAwF;gBACxF,0DAA0D;gBAC1D,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC,CAAC;gBAC1F,mFAAmF;gBACnF,4EAA4E;gBAC5E,IAAI,SAAS,IAAI,CAAC;oBAAE,MAAM;gBAC1B,MAAM,IAAI,SAAS,CAAC;YACtB,CAAC;YACD,0FAA0F;YAC1F,4FAA4F;YAC5F,oFAAoF;YACpF,yFAAyF;YACzF,qEAAqE;YACrE,cAAc,CAAC,OAAO,CAAC,CAAC;YACxB,OAAO,eAAe,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;QACrE,CAAC;QACD,KAAK,CAAC,KAAK;YACT,MAAM,MAAM,CAAC,KAAK,EAAE,CAAC;QACvB,CAAC;KACF,CAAC;AACJ,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,UAAU,CAAC,IAAY;IAC3C,MAAM,MAAM,GAAG,MAAM,EAAE,CAAC,IAAI,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;IACxC,IAAI,CAAC;QACH,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,IAAI,EAAE,CAAC;QAClC,MAAM,UAAU,GAAG,KAAK,CAAC,IAAI,CAAC;QAC9B,IAAI,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,CAAC,IAAI,UAAU,GAAG,CAAC,EAAE,CAAC;YACxD,MAAM,IAAI,cAAc,CACtB,yDAAyD,UAAU,aAAa;gBAC9E,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,+DAA+D;gBACtF,iFAAiF,EACnF,EAAE,MAAM,EAAE,CAAC,EAAE,eAAe,EAAE,CAAC,EAAE,CAClC,CAAC;QACJ,CAAC;QACD,OAAO,gBAAgB,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;IAC9C,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,wFAAwF;QACxF,0FAA0F;QAC1F,kFAAkF;QAClF,MAAM,MAAM,CAAC,KAAK,EAAE,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,SAAS,CAAC,CAAC;QAC5C,MAAM,KAAK,CAAC;IACd,CAAC;AACH,CAAC"}
package/dist/tal/annotations.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAyUrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAoJtB"}
1
+ {"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAyUrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CA2JtB"}
package/dist/tal/annotations.js CHANGED
@@ -350,25 +350,32 @@ export function decodeAnnotations(header, recordBytes, records, options) {
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  }
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  const startOffsetTicks = resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTicks, firstObserved, options);
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  pending.sort(compareAnnotations);
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- const annotations = pending.map((item) => ({
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- onsetSecondsFromHeaderStart: ticksToSeconds(item.onsetTicks),
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- onsetSecondsFromFirstRecord: ticksToSeconds(item.onsetTicks - startOffsetTicks),
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- onsetTicks: item.onsetTicks,
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- // The exact form of the line above. Saturating rather than wrapping, for the same reason
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- // record onsets do: an onset already at the edge of the int64 range must not come back as a
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- // large positive number after a subtraction.
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- onsetTicksFromFirstRecord: saturateToInt64(item.onsetTicks - startOffsetTicks),
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- onsetRaw: item.onsetRaw,
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- durationSeconds: item.durationTicks === undefined ? undefined : ticksToSeconds(item.durationTicks),
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- durationTicks: item.durationTicks,
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- durationRaw: item.durationRaw,
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- text: item.text,
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- channelLabel: item.channelLabel,
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- signalIndex: item.signalIndex,
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- recordIndex: item.recordIndex,
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- byteOffsetInRecord: item.byteOffsetInRecord,
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- textEncoding: item.textEncoding,
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- }));
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+ const annotations = pending.map((item) => {
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+ // ONE rebased value, and both published fields derived from it. Saturating rather than
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+ // wrapping, for the same reason record onsets do: an onset already at the edge of the int64
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+ // range must not come back as a large positive number after a subtraction.
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+ //
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+ // Computing the seconds from the UNSATURATED difference and the ticks from the saturated one
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+ // made the two disagree — by a factor of two at the edge — for the same event. The float field
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+ // is documented as the lossy view of the exact one, so it has to be a view OF it.
361
+ const rebasedTicks = saturateToInt64(item.onsetTicks - startOffsetTicks);
362
+ return {
363
+ onsetSecondsFromHeaderStart: ticksToSeconds(item.onsetTicks),
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+ onsetSecondsFromFirstRecord: ticksToSeconds(rebasedTicks),
365
+ onsetTicks: item.onsetTicks,
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+ onsetTicksFromFirstRecord: rebasedTicks,
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+ onsetRaw: item.onsetRaw,
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+ durationSeconds: item.durationTicks === undefined ? undefined : ticksToSeconds(item.durationTicks),
369
+ durationTicks: item.durationTicks,
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+ durationRaw: item.durationRaw,
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+ text: item.text,
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+ channelLabel: item.channelLabel,
373
+ signalIndex: item.signalIndex,
374
+ recordIndex: item.recordIndex,
375
+ byteOffsetInRecord: item.byteOffsetInRecord,
376
+ textEncoding: item.textEncoding,
377
+ };
378
+ });
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  return {
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  annotations: Object.freeze(annotations),
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  recordOnsetTicks,
package/dist/tal/annotations.js.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "edfcore",
3
- "version": "0.2.37",
3
+ "version": "0.2.39",
4
4
  "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
5
5
  "keywords": [
6
6
  "edf",
package/src/constants.ts CHANGED
@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
93
93
  } as const;
94
94
 
95
95
  /** Published package version. Kept in sync with package.json by a test. */
96
- export const VERSION = '0.2.37';
96
+ export const VERSION = '0.2.39';
package/src/node.ts CHANGED
@@ -96,6 +96,12 @@ export function fileHandleSource(handle: FileHandleLike, byteLength: number): By
96
96
  if (bytesRead <= 0) break;
97
97
  filled += bytesRead;
98
98
  }
99
+ // Checked again AFTER the syscalls, not only before each one. The common case is a single
100
+ // read that returns everything, so the loop's check ran once, before it — and a signal that
101
+ // flipped while the syscall was in flight was ignored and the data returned anyway.
102
+ // `blobSource` has always rejected in that situation, and one adapter honouring a signal
103
+ // that another quietly ignores is worse than either rule on its own.
104
+ throwIfAborted(options);
99
105
  return assertExactRead(buffer.subarray(0, filled), offset, length);
100
106
  },
101
107
  async close(): Promise<void> {
package/src/tal/annotations.ts CHANGED
@@ -499,26 +499,33 @@ export function decodeAnnotations(
499
499
  );
500
500
 
501
501
  pending.sort(compareAnnotations);
502
- const annotations: EdfAnnotation[] = pending.map((item) => ({
503
- onsetSecondsFromHeaderStart: ticksToSeconds(item.onsetTicks),
504
- onsetSecondsFromFirstRecord: ticksToSeconds(item.onsetTicks - startOffsetTicks),
505
- onsetTicks: item.onsetTicks,
506
- // The exact form of the line above. Saturating rather than wrapping, for the same reason
507
- // record onsets do: an onset already at the edge of the int64 range must not come back as a
508
- // large positive number after a subtraction.
509
- onsetTicksFromFirstRecord: saturateToInt64(item.onsetTicks - startOffsetTicks),
510
- onsetRaw: item.onsetRaw,
511
- durationSeconds:
512
- item.durationTicks === undefined ? undefined : ticksToSeconds(item.durationTicks),
513
- durationTicks: item.durationTicks,
514
- durationRaw: item.durationRaw,
515
- text: item.text,
516
- channelLabel: item.channelLabel,
517
- signalIndex: item.signalIndex,
518
- recordIndex: item.recordIndex,
519
- byteOffsetInRecord: item.byteOffsetInRecord,
520
- textEncoding: item.textEncoding,
521
- }));
502
+ const annotations: EdfAnnotation[] = pending.map((item) => {
503
+ // ONE rebased value, and both published fields derived from it. Saturating rather than
504
+ // wrapping, for the same reason record onsets do: an onset already at the edge of the int64
505
+ // range must not come back as a large positive number after a subtraction.
506
+ //
507
+ // Computing the seconds from the UNSATURATED difference and the ticks from the saturated one
508
+ // made the two disagree — by a factor of two at the edge — for the same event. The float field
509
+ // is documented as the lossy view of the exact one, so it has to be a view OF it.
510
+ const rebasedTicks = saturateToInt64(item.onsetTicks - startOffsetTicks);
511
+ return {
512
+ onsetSecondsFromHeaderStart: ticksToSeconds(item.onsetTicks),
513
+ onsetSecondsFromFirstRecord: ticksToSeconds(rebasedTicks),
514
+ onsetTicks: item.onsetTicks,
515
+ onsetTicksFromFirstRecord: rebasedTicks,
516
+ onsetRaw: item.onsetRaw,
517
+ durationSeconds:
518
+ item.durationTicks === undefined ? undefined : ticksToSeconds(item.durationTicks),
519
+ durationTicks: item.durationTicks,
520
+ durationRaw: item.durationRaw,
521
+ text: item.text,
522
+ channelLabel: item.channelLabel,
523
+ signalIndex: item.signalIndex,
524
+ recordIndex: item.recordIndex,
525
+ byteOffsetInRecord: item.byteOffsetInRecord,
526
+ textEncoding: item.textEncoding,
527
+ };
528
+ });
522
529
 
523
530
  return {
524
531
  annotations: Object.freeze(annotations),