edfcore 0.2.27 → 0.2.28

package/CHANGELOG.md

@@ -6,6 +6,21 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
 
+## 0.2.28
+
+- **Fixed** `readAnnotations` answering on the header's axis for any record range that does not
+  start at record 0, on a file that declares a sub-second start offset. The rebasing origin was
+  derived from the first observed onset, which only works while the records in between are
+  contiguous — on an EDF+D file the derivation lands outside `[0, 1)` and the rebasing switches off
+  entirely. So the same annotation read 10 s from a whole-file decode and 10.25 s from a partial
+  one, while `readWindow` reported the record starting at 10 s either way. The pairing the docs
+  recommend, `readAnnotations(recording, chunk.records)` beside a `readWindow`, is exactly the call
+  that hit it. Sixth instance of the nominal-grid defect, and the first one the 0.2.25 property
+  test caught rather than a user.
+- **Added** `DecodeAnnotationsOptions.startOffsetTicks`. The offset is a property of the file, not
+  of the range; `readAnnotations` passes `timeline.startOffsetTicks` for you, and a direct
+  `decodeAnnotations` call on a partial range should pass it too.
+
 ## 0.2.27
 
 Three defects in one place: the CLI's argument handling did not match its own documented exit-code

package/dist/constants.d.ts

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.2.27";
+export declare const VERSION = "0.2.28";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.2.27';
+export const VERSION = '0.2.28';
 //# sourceMappingURL=constants.js.map

package/dist/recording.d.ts.map

@@ -1 +1 @@
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package/dist/recording.js

@@ -198,6 +198,13 @@ export async function readWindow(recording, selection, options) {
  */
 export async function readAnnotations(recording, records, options) {
     const bytes = await readRecordBytes(recording.source, recording.header, records, options);
-    return decodeAnnotations(recording.header, bytes, records, options);
+    // The timeline knows record 0's sub-second start offset; a range that does not contain record 0
+    // cannot derive it, and on an EDF+D file the derivation gives a value outside [0, 1) and the
+    // rebasing switches off. Passing it makes the same annotation read the same way from a partial
+    // decode as from a whole-file one — which is the point of `readAnnotations(edf, chunk.records)`.
+    return decodeAnnotations(recording.header, bytes, records, {
+        startOffsetTicks: recording.timeline.startOffsetTicks,
+        ...options,
+    });
 }
 //# sourceMappingURL=recording.js.map

package/dist/recording.js.map

@@ -1 +1 @@
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+{"version":3,"file":"recording.js","sourceRoot":"","sources":["../src/recording.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAEH,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,EAAE,uBAAuB,EAAE,MAAM,aAAa,CAAC;AACtD,OAAO,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAClD,OAAO,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAC;AACzD,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAChD,OAAO,EAAE,yBAAyB,EAAE,MAAM,oBAAoB,CAAC;AAC/D,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AAmBrD;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,OAAO,CAAC,MAAkB,EAAE,OAAqB;IACrE,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjD,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,MAAM,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;IACzE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,CAAC;AAC7C,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,UAAU,cAAc,CAC5B,MAAiB,EACjB,aAAgC;IAEhC,MAAM,IAAI,GAAG,IAAI,GAAG,EAAU,CAAC;IAC/B,MAAM,OAAO,GAAgB,EAAE,CAAC;IAChC,KAAK,MAAM,WAAW,IAAI,aAAa,EAAE,CAAC;QACxC,IAAI,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC;YAAE,SAAS;QACpC,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,CAAC;QAEtB,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;QAC3C,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;YACzB,MAAM,IAAI,uBAAuB,CAC/B,eAAe,WAAW,mBAAmB,MAAM,CAAC,OAAO,CAAC,MAAM,qBAAqB;gBACrF,mFAAmF;gBACnF,2BAA2B,EAC7B,EAAE,QAAQ,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAC/E,CAAC;QACJ,CAAC;QACD,IAAI,MAAM,CAAC,IAAI,KAAK,aAAa,EAAE,CAAC;YAClC,MAAM,IAAI,UAAU,CAClB,UAAU,WAAW,KAAK,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC,+BAA+B;gBACnF,kFAAkF;gBAClF,iFAAiF;gBACjF,+DAA+D,CAClE,CAAC;QACJ,CAAC;QACD,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IACvB,CAAC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,SAAS,CAAC,KAAqB,EAAE,WAAmB;IAClE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC;IACjC,IAAI,QAAQ,KAAK,SAAS,IAAI,IAAI,KAAK,SAAS;QAAE,OAAO,SAAS,CAAC;IACnE,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,MAAM,KAAK,GAAG,QAAQ,CAAC,GAAG,CAAC,iBAAiB,CAAC,CAAC;QAC9C,IAAI,KAAK,KAAK,SAAS,IAAI,KAAK,CAAC,OAAO,CAAC,KAAK,KAAK,WAAW;YAAE,OAAO,GAAG,CAAC;IAC7E,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED;;;;;;;GAOG;AACH,KAAK,UAAU,SAAS,CACtB,SAAuB,EACvB,OAAoB,EACpB,aAAgC,EAChC,OAAqB;IAErB,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,SAAS,CAAC;IACtD,MAAM,OAAO,GAAG,cAAc,CAAC,MAAM,EAAE,aAAa,CAAC,CAAC;IAEtD,MAAM,KAAK,GAAG,MAAM,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;IACtE,MAAM,UAAU,GAAG,MAAM,CAAC,gBAAgB,GAAG,OAAO,CAAC,KAAK,GAAG,MAAM,CAAC,gBAAgB,CAAC;IAErF,6FAA6F;IAC7F,0FAA0F;IAC1F,6FAA6F;IAC7F,+FAA+F;IAC/F,uFAAuF;IACvF,4FAA4F;IAC5F,4FAA4F;IAC5F,gEAAgE;IAChE,MAAM,WAAW,GAAG,iBAAiB,CAAC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE;QAC5D,WAAW,EAAE,QAAQ,CAAC,gBAAgB;KACvC,CAAC,CAAC;IACH,MAAM,MAAM,GAAG,WAAW,CAAC,gBAAgB,CAAC;IAC5C,yBAAyB,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,CAAC,CAAC;IAEjD,MAAM,aAAa,GAAG,MAAM,CAAC,mBAAmB,CAAC;IACjD,MAAM,iBAAiB,GAAG,QAAQ,CAAC,gBAAgB,GAAG,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,GAAG,aAAa,CAAC;IAC5F,MAAM,eAAe,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,iBAAiB,CAAC;IACvD,MAAM,cAAc,GAClB,OAAO,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,CAAC,IAAI,eAAe,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC;IACvF,MAAM,UAAU,GAAG,eAAe,GAAG,QAAQ,CAAC,gBAAgB,CAAC;IAC/D,8FAA8F;IAC9F,yFAAyF;IACzF,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,cAAc,GAAG,aAAa,GAAG,eAAe,CAAC,CAAC,CAAC,EAAE,CAAC;IAC5F,MAAM,YAAY,GAAG,cAAc,CAAC,UAAU,CAAC,CAAC;IAEhD,MAAM,YAAY,GAAqB,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE;QAC5D,MAAM,OAAO,GAAG,oBAAoB,CAAC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,MAAM,CAAC,KAAK,EAAE,SAAS,EAAE,OAAO,CAAC,CAAC;QAC/F,OAAO;YACL,WAAW,EAAE,MAAM,CAAC,KAAK;YACzB,WAAW,EAAE,OAAO,CAAC,OAAO,CAAC,MAAM;YACnC,OAAO,EAAE,OAAO,CAAC,OAAO;YACxB,gBAAgB,EAAE,OAAO,CAAC,KAAK,GAAG,MAAM,CAAC,gBAAgB;YACzD,YAAY;YACZ,sBAAsB,EAAE,OAAO,CAAC,sBAAsB;SACvD,CAAC;IACJ,CAAC,CAAC,CAAC;IAEH,OAAO;QACL,OAAO;QACP,YAAY;QACZ,eAAe,EAAE,cAAc,CAAC,SAAS,CAAC;QAC1C,UAAU;QACV,UAAU,EAAE,KAAK,CAAC,MAAM;QACxB,OAAO,EAAE,MAAM,CAAC,MAAM,CAAC,YAAY,CAAC;QACpC,aAAa,EAAE,SAAS,CAAC,KAAK,EAAE,OAAO,CAAC,KAAK,CAAC;QAC9C,WAAW,EAAE,WAAW,CAAC,WAAW;KACrC,CAAC;AACJ,CAAC;AAED,kGAAkG;AAClG,MAAM,CAAC,KAAK,UAAU,WAAW,CAC/B,SAAuB,EACvB,SAA0B,EAC1B,OAAqB;IAErB,OAAO,SAAS,CAAC,SAAS,EAAE,SAAS,CAAC,OAAO,EAAE,SAAS,CAAC,aAAa,EAAE,OAAO,CAAC,CAAC;AACnF,CAAC;AAED;;;;;;;;;;;;;;GAcG;AACH,MAAM,CAAC,KAAK,UAAU,UAAU,CAC9B,SAAuB,EACvB,SAA0B,EAC1B,OAAqB;IAErB;;;;;;;;;;;OAWG;IACH,cAAc,CAAC,SAAS,CAAC,MAAM,EAAE,SAAS,CAAC,aAAa,CAAC,CAAC;IAE1D,MAAM,MAAM,GAAG,iBAAiB,CAC9B,SAAS,CAAC,QAAQ,EAClB,SAAS,CAAC,KAAK,EACf,SAAS,CAAC,YAAY,EACtB,SAAS,CAAC,eAAe,CAC1B,CAAC;IAEF,MAAM,MAAM,GAAe,EAAE,CAAC;IAC9B,KAAK,MAAM,OAAO,IAAI,MAAM,EAAE,CAAC;QAC7B,MAAM,CAAC,IAAI,CAAC,MAAM,SAAS,CAAC,SAAS,EAAE,OAAO,EAAE,SAAS,CAAC,aAAa,EAAE,OAAO,CAAC,CAAC,CAAC;IACrF,CAAC;IACD,OAAO,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;AAC/B,CAAC;AAED;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,eAAe,CACnC,SAAuB,EACvB,OAAoB,EACpB,OAAgD;IAEhD,MAAM,KAAK,GAAG,MAAM,eAAe,CAAC,SAAS,CAAC,MAAM,EAAE,SAAS,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;IAC1F,gGAAgG;IAChG,6FAA6F;IAC7F,+FAA+F;IAC/F,iGAAiG;IACjG,OAAO,iBAAiB,CAAC,SAAS,CAAC,MAAM,EAAE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package/dist/tal/annotations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAqSrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAgJtB"}
+{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAqSrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAiJtB"}

package/dist/tal/annotations.js

@@ -334,7 +334,7 @@ export function decodeAnnotations(header, recordBytes, records, options) {
         recordOnsetTicks[position] =
             observed ?? saturateToInt64(baseTicks + BigInt(records.start + position) * durationTicks);
     }
-    const startOffsetTicks = resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTicks, firstObserved);
+    const startOffsetTicks = resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTicks, firstObserved, options);
     pending.sort(compareAnnotations);
     const annotations = pending.map((item) => ({
         onsetSecondsFromHeaderStart: ticksToSeconds(item.onsetTicks),
@@ -379,7 +379,7 @@ export function decodeAnnotations(header, recordBytes, records, options) {
  * diagnostic there would make `strict` reject every conformant discontinuous recording — the
  * record-index probes read exactly one late record.
  */
-function resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTicks, firstObserved) {
+function resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTicks, firstObserved, options) {
     if (records.count === 0)
         return 0n;
     const origin = firstObserved === undefined
@@ -388,6 +388,12 @@ function resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTi
             ? `raw timekeeping onset "${firstObserved.raw}"`
             : `derived from record ${firstObserved.recordIndex}, timekeeping onset ` +
                 `"${firstObserved.raw}"`;
+    // A caller who knows the file's own offset outranks any derivation: the offset is a property of
+    // the recording, and deriving it from an observed onset only works while the records in between
+    // are contiguous. `readAnnotations` always knows it, from the timeline.
+    const supplied = options?.startOffsetTicks;
+    if (supplied !== undefined)
+        return supplied;
     if (records.start === 0) {
         const onset = recordOnsetTicks[0] ?? 0n;
         if (onset < 0n || onset >= TICKS_PER_SECOND) {

package/dist/tal/annotations.js.map

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package/dist/types.d.ts

@@ -501,6 +501,21 @@ export interface WindowSelection {
 export interface DecodeAnnotationsOptions extends ParseOptions {
     /** Defaults to every annotation signal. Only the first carries timekeeping. */
     readonly signalIndices?: readonly number[];
+    /**
+     * Record 0's sub-second start offset, in ticks — the origin `onsetTicksFromFirstRecord` and
+     * `onsetSecondsFromFirstRecord` are measured from.
+     *
+     * This is a property of the FILE, not of the range being decoded, but a range that does not
+     * contain record 0 cannot see it: the derivation from an observed onset only works when the
+     * records in between are contiguous, so on an EDF+D file it produces a value outside [0, 1) and
+     * the rebasing switches off. The same annotation then reads one way from a whole-file decode and
+     * another from a partial one, differing by the offset — while `readWindow` reports the record's
+     * true start either way.
+     *
+     * `readAnnotations` passes `timeline.startOffsetTicks` for you. Pass it yourself when calling
+     * `decodeAnnotations` directly on a range that does not start at record 0.
+     */
+    readonly startOffsetTicks?: bigint;
     /**
      * The recording's own time origin, for deriving the onset of a record whose timekeeping TAL
      * is missing.

package/dist/types.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.2.27",
+  "version": "0.2.28",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/constants.ts

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.2.27';
+export const VERSION = '0.2.28';

package/src/recording.ts

@@ -259,5 +259,12 @@ export async function readAnnotations(
   options?: DecodeAnnotationsOptions & ReadOptions,
 ): Promise<EdfAnnotationsResult> {
   const bytes = await readRecordBytes(recording.source, recording.header, records, options);
-  return decodeAnnotations(recording.header, bytes, records, options);
+  // The timeline knows record 0's sub-second start offset; a range that does not contain record 0
+  // cannot derive it, and on an EDF+D file the derivation gives a value outside [0, 1) and the
+  // rebasing switches off. Passing it makes the same annotation read the same way from a partial
+  // decode as from a whole-file one — which is the point of `readAnnotations(edf, chunk.records)`.
+  return decodeAnnotations(recording.header, bytes, records, {
+    startOffsetTicks: recording.timeline.startOffsetTicks,
+    ...options,
+  });
 }

package/src/tal/annotations.ts

@@ -456,6 +456,7 @@ export function decodeAnnotations(
     recordOnsetTicks,
     baseTicks,
     firstObserved,
+    options,
   );
 
   pending.sort(compareAnnotations);
@@ -512,6 +513,7 @@ function resolveStartOffsetTicks(
   recordOnsetTicks: BigInt64Array,
   baseTicks: bigint,
   firstObserved: ObservedOnset | undefined,
+  options: DecodeAnnotationsOptions | undefined,
 ): bigint {
   if (records.count === 0) return 0n;
 
@@ -523,6 +525,12 @@ function resolveStartOffsetTicks(
         : `derived from record ${firstObserved.recordIndex}, timekeeping onset ` +
           `"${firstObserved.raw}"`;
 
+  // A caller who knows the file's own offset outranks any derivation: the offset is a property of
+  // the recording, and deriving it from an observed onset only works while the records in between
+  // are contiguous. `readAnnotations` always knows it, from the timeline.
+  const supplied = options?.startOffsetTicks;
+  if (supplied !== undefined) return supplied;
+
   if (records.start === 0) {
     const onset = recordOnsetTicks[0] ?? 0n;
     if (onset < 0n || onset >= TICKS_PER_SECOND) {

package/src/types.ts

@@ -587,6 +587,21 @@ export interface WindowSelection {
 export interface DecodeAnnotationsOptions extends ParseOptions {
   /** Defaults to every annotation signal. Only the first carries timekeeping. */
   readonly signalIndices?: readonly number[];
+  /**
+   * Record 0's sub-second start offset, in ticks — the origin `onsetTicksFromFirstRecord` and
+   * `onsetSecondsFromFirstRecord` are measured from.
+   *
+   * This is a property of the FILE, not of the range being decoded, but a range that does not
+   * contain record 0 cannot see it: the derivation from an observed onset only works when the
+   * records in between are contiguous, so on an EDF+D file it produces a value outside [0, 1) and
+   * the rebasing switches off. The same annotation then reads one way from a whole-file decode and
+   * another from a partial one, differing by the offset — while `readWindow` reports the record's
+   * true start either way.
+   *
+   * `readAnnotations` passes `timeline.startOffsetTicks` for you. Pass it yourself when calling
+   * `decodeAnnotations` directly on a range that does not start at record 0.
+   */
+  readonly startOffsetTicks?: bigint;
   /**
    * The recording's own time origin, for deriving the onset of a record whose timekeeping TAL
    * is missing.