edfcore 0.2.25 → 0.2.28

package/CHANGELOG.md

@@ -6,6 +6,57 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
 
+## 0.2.28
+
+- **Fixed** `readAnnotations` answering on the header's axis for any record range that does not
+  start at record 0, on a file that declares a sub-second start offset. The rebasing origin was
+  derived from the first observed onset, which only works while the records in between are
+  contiguous — on an EDF+D file the derivation lands outside `[0, 1)` and the rebasing switches off
+  entirely. So the same annotation read 10 s from a whole-file decode and 10.25 s from a partial
+  one, while `readWindow` reported the record starting at 10 s either way. The pairing the docs
+  recommend, `readAnnotations(recording, chunk.records)` beside a `readWindow`, is exactly the call
+  that hit it. Sixth instance of the nominal-grid defect, and the first one the 0.2.25 property
+  test caught rather than a user.
+- **Added** `DecodeAnnotationsOptions.startOffsetTicks`. The offset is a property of the file, not
+  of the range; `readAnnotations` passes `timeline.startOffsetTicks` for you, and a direct
+  `decodeAnnotations` call on a partial range should pass it too.
+
+## 0.2.27
+
+Three defects in one place: the CLI's argument handling did not match its own documented exit-code
+contract, which is the part a CI job depends on without parsing output.
+
+- **Fixed** bad usage exiting 1 instead of the documented 2. `parseArgs` threw a plain `RangeError`
+  that `cli.ts` caught alongside every other failure, so `--limit all` was indistinguishable from a
+  corrupt recording to the job gating on it. Usage mistakes now throw `CliUsageError`, which
+  extends `RangeError` so anyone already catching that keeps working.
+- **Fixed** an unknown option being ignored. A misspelled `--patinet` was dropped silently, so the
+  command printed the patient identification the caller was trying to withhold, and exited 0.
+- **Fixed** extra positional arguments being dropped. `edfcore validate *.edf` validated whichever
+  file the shell expanded first, exited 0, and said nothing about the rest — a green CI gate for
+  files that were never opened. It now refuses and names them, and suggests the shell loop.
+- **Fixed** `npx edfcore --help` exiting 2. `parseArgs` never puts a dash-prefixed argument in the
+  command slot, so `runCli`'s `command === '--help'` branch was unreachable and help fell through
+  to "no command". `--help` and `-h` are now flags, handled beside `--version`, and exit 0.
+
+## 0.2.26
+
+- **Fixed** `edfcore header` and `edfcore validate` printing the full local patient identification
+  without `--patient`. Withholding it from the summary was never enough on its own: a diagnostic
+  names the raw bytes as written — that is the message contract and what makes a report
+  actionable — so a NON-CONFORMANT identification field had its whole content printed in the
+  diagnostics block directly underneath the line that had just withheld it. `header` printed the
+  name three times and `validate` six. The trigger is not exotic: a writer that packs the name into
+  one token fails the EDF+ four-subfield grammar, and a file that behaves oddly is exactly the one
+  someone runs this on and pastes into an issue tracker — which is the whole reason the flag
+  exists. Recording identification, which carries technician and investigation codes, leaked the
+  same way.
+- **Added** `redactFields` to `FormatDiagnosticsOptions` and `FormatReportOptions`. The diagnostic
+  still reports its code, severity, byte offset, rule and next step; only the value is replaced,
+  and `rawBytes` is dropped outright because a hex dump with an ASCII column redacts nothing.
+  Diagnostics about every other field are untouched — a signal-label or numeric-field diagnostic
+  keeps its raw bytes, since that is what makes it actionable and none of it identifies anyone.
+
 ## 0.2.25
 
 - **Added** a property test pinning the ONE timebase invariant across every public function that

package/dist/cli-run.d.ts

@@ -6,6 +6,22 @@
  * can only be tested once the package is built, so the tests either skip in CI or test a stale
  * binary. This way the exit codes and the output are ordinary unit tests.
  */
+/**
+ * A mistake in the command line, as opposed to a mistake in the file.
+ *
+ * The documented exit codes are 0 success, 1 the file is unreadable or failed validation, 2 bad
+ * usage — and a script gates on them without parsing output. `parseArgs` used to throw a plain
+ * `RangeError`, which `cli.ts` caught with everything else and reported as 1, so `--limit all` was
+ * indistinguishable from a corrupt recording. This type is what lets the shell tell them apart.
+ *
+ * It EXTENDS `RangeError` rather than `Error`, so a caller who was already catching `RangeError`
+ * from `parseArgs` — the package's convention for a caller mistake, and what the existing test
+ * pins — keeps working unchanged. The new class narrows that, it does not replace it.
+ */
+export declare class CliUsageError extends RangeError {
+    readonly usage: true;
+    constructor(message: string);
+}
 /** Everything the CLI touches outside itself. */
 export interface CliIo {
     readFile(path: string): Promise<Uint8Array>;
@@ -18,6 +34,7 @@ export interface Args {
     readonly patient: boolean;
     readonly list: boolean;
     readonly version: boolean;
+    readonly help: boolean;
     readonly limit: number | undefined;
 }
 export declare function parseArgs(argv: readonly string[]): Args;

package/dist/cli-run.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cli-run.d.ts","sourceRoot":"","sources":["../src/cli-run.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAYH;;;;;;;;;;;GAWG;AACH,qBAAa,aAAc,SAAQ,UAAU;IAC3C,QAAQ,CAAC,KAAK,EAAG,IAAI,CAAU;gBAEnB,OAAO,EAAE,MAAM;CAI5B;AAED,iDAAiD;AACjD,MAAM,WAAW,KAAK;IACpB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;IAC5C,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AAsBD,MAAM,WAAW,IAAI;IACnB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IAClC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;CACpC;AAED,wBAAgB,SAAS,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,CAkDvD;AAwBD,wBAAsB,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CAkKnE"}

package/dist/cli-run.js

@@ -15,6 +15,25 @@ import { byteSource } from './io/bytes.js';
 import { buildRecordIndex } from './record-index.js';
 import { openEdf, readAnnotations } from './recording.js';
 import { validateRecording } from './validate.js';
+/**
+ * A mistake in the command line, as opposed to a mistake in the file.
+ *
+ * The documented exit codes are 0 success, 1 the file is unreadable or failed validation, 2 bad
+ * usage — and a script gates on them without parsing output. `parseArgs` used to throw a plain
+ * `RangeError`, which `cli.ts` caught with everything else and reported as 1, so `--limit all` was
+ * indistinguishable from a corrupt recording. This type is what lets the shell tell them apart.
+ *
+ * It EXTENDS `RangeError` rather than `Error`, so a caller who was already catching `RangeError`
+ * from `parseArgs` — the package's convention for a caller mistake, and what the existing test
+ * pins — keeps working unchanged. The new class narrows that, it does not replace it.
+ */
+export class CliUsageError extends RangeError {
+    usage = true;
+    constructor(message) {
+        super(message);
+        this.name = 'CliUsageError';
+    }
+}
 const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
 
   npx edfcore header <file>       the header, the signals, and any diagnostics
@@ -25,6 +44,7 @@ const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
   npx edfcore json <file>         the header as JSON, for piping into jq
 
 Options
+  --help, -h                      print this and exit 0
   --patient                       include patient identification (header, json)
   --list                          list events one per line instead of counting (events)
   --limit <n>                     individual diagnostics or events to print (default 20)
@@ -38,6 +58,7 @@ export function parseArgs(argv) {
     let patient = false;
     let list = false;
     let version = false;
+    let help = false;
     let limit;
     for (let i = 0; i < argv.length; i += 1) {
         const arg = argv[i];
@@ -47,19 +68,54 @@ export function parseArgs(argv) {
             list = true;
         else if (arg === '--version' || arg === '-v')
             version = true;
+        else if (arg === '--help' || arg === '-h')
+            help = true;
         else if (arg === '--limit') {
             const value = Number(argv[i + 1]);
             // A NaN limit would disable the cap silently, which is the opposite of what was asked for.
             if (!Number.isSafeInteger(value) || value < 0) {
-                throw new RangeError(`--limit needs a whole number, received ${String(argv[i + 1])}`);
+                throw new CliUsageError(`--limit needs a whole number, received ${String(argv[i + 1])}. Next: pass a count, ` +
+                    'or omit --limit for the default of 20.');
             }
             limit = value;
             i += 1;
         }
-        else if (arg !== undefined && !arg.startsWith('-'))
+        else if (arg?.startsWith('-')) {
+            // An unrecognised flag is bad usage, not something to ignore: a misspelled --patinet would
+            // otherwise print the output the caller was trying to avoid, quietly and with exit 0.
+            throw new CliUsageError(`unknown option ${JSON.stringify(arg)}. Next: run \`edfcore --help\` for the list.`);
+        }
+        else if (arg !== undefined)
             positional.push(arg);
     }
-    return { command: positional[0], file: positional[1], patient, list, version, limit };
+    if (positional.length > 2) {
+        // Silently dropping the rest is the dangerous shape: `edfcore validate *.edf` would check the
+        // first file, exit 0, and report success for every other file the shell expanded — in a CI
+        // gate, which is what the exit code exists for.
+        throw new CliUsageError(`expected one file, received ${positional.length - 1}: ` +
+            `${positional
+                .slice(1)
+                .map((value) => JSON.stringify(value))
+                .join(', ')}. ` +
+            'edfcore reads one file per invocation. Next: loop in the shell — ' +
+            'for f in *.edf; do edfcore validate "$f" || exit 1; done');
+    }
+    return { command: positional[0], file: positional[1], patient, list, version, help, limit };
+}
+/**
+ * What `--patient` actually has to gate.
+ *
+ * Withholding the identification line from `formatHeader` is not enough on its own. A diagnostic
+ * names the raw bytes as written — that is the message contract, and it is what makes a report
+ * actionable — so a NON-CONFORMANT identification field gets its whole content printed in the
+ * diagnostics block underneath. That is not a rare file: a writer that packs the name into a
+ * single token fails the EDF+ grammar, and a file that behaves oddly is exactly the one someone
+ * runs `edfcore header` on and pastes into an issue.
+ *
+ * So the two must be gated together, by the same flag, in every command that prints either.
+ */
+function redaction(args) {
+    return args.patient ? {} : { redactFields: ['patientId', 'recordingId'] };
 }
 async function open(io, file) {
     // Read whole rather than fileSource: a CLI invocation is one pass over one file, and holding
@@ -74,9 +130,17 @@ export async function runCli(args, io) {
         io.out(`${VERSION}\n`);
         return 0;
     }
-    if (command === undefined || command === 'help' || command === '--help') {
+    // `--help` is a FLAG, handled here alongside `--version`, because `parseArgs` never puts a
+    // dash-prefixed argument in `command`: the old `command === '--help'` branch could not be
+    // reached, so `edfcore --help` fell through to "no command" and exited 2 — on the first thing
+    // most people type.
+    if (args.help || command === 'help') {
         io.out(USAGE);
-        return command === undefined ? 2 : 0;
+        return 0;
+    }
+    if (command === undefined) {
+        io.out(USAGE);
+        return 2;
     }
     if (file === undefined) {
         io.err(`edfcore ${command}: no file given\n\n${USAGE}`);
@@ -87,14 +151,21 @@ export async function runCli(args, io) {
             const recording = await open(io, file);
             io.out(`${formatHeader(recording.header, { includePatientId: args.patient })}\n`);
             if (recording.header.diagnostics.length > 0) {
-                io.out(`\n${formatDiagnostics(recording.header.diagnostics, { maxItems: args.limit ?? 20 })}\n`);
+                io.out(`\n${formatDiagnostics(recording.header.diagnostics, {
+                    maxItems: args.limit ?? 20,
+                    ...redaction(args),
+                })}\n`);
             }
             return 0;
         }
         case 'validate': {
             const recording = await open(io, file);
             const report = await validateRecording(recording, { scanSamples: true });
-            io.out(`${formatValidationReport(report, { header: recording.header, maxItems: args.limit ?? 20 })}\n`);
+            io.out(`${formatValidationReport(report, {
+                header: recording.header,
+                maxItems: args.limit ?? 20,
+                ...redaction(args),
+            })}\n`);
             // Exit 1 on failure so a CI job can gate on it without parsing the output.
             return report.ok ? 0 : 1;
         }

package/dist/cli-run.js.map

@@ -1 +1 @@
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package/dist/cli.js

@@ -18,7 +18,7 @@ import * as nodeFsPromises from 'node:fs/promises';
 // biome-ignore lint/suspicious/noTsIgnore: as above.
 // @ts-ignore 'node:process' has no declarations under `types: []`; its shape is below.
 import * as nodeProcess from 'node:process';
-import { parseArgs, runCli } from './cli-run.js';
+import { CliUsageError, parseArgs, runCli } from './cli-run.js';
 import { isEdfError } from './errors.js';
 const fs = nodeFsPromises;
 const proc = nodeProcess.default ??
@@ -41,7 +41,10 @@ async function main() {
         // top of it would bury the one useful line.
         const message = isEdfError(error) || error instanceof Error ? error.message : String(error);
         proc.stderr.write(`edfcore: ${message}\n`);
-        proc.exitCode = 1;
+        // 2 is the documented code for bad usage and 1 for a file that could not be read. Reporting
+        // both as 1 makes a typo indistinguishable from a corrupt recording to the script that is
+        // gating on it.
+        proc.exitCode = error instanceof CliUsageError ? 2 : 1;
     }
 }
 // Not `await main()`: the package documents that no module in its graph uses top-level await,

package/dist/cli.js.map

@@ -1 +1 @@
-{"version":3,"file":"cli.js","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;;;;;;;GAYG;AAEH,8FAA8F;AAC9F,2FAA2F;AAC3F,OAAO,KAAK,cAAc,MAAM,kBAAkB,CAAC;AACnD,qDAAqD;AACrD,uFAAuF;AACvF,OAAO,KAAK,WAAW,MAAM,cAAc,CAAC;AAC5C,OAAO,EAAc,SAAS,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AAC7D,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAYzC,MAAM,EAAE,GAAW,cAAmC,CAAC;AACvD,MAAM,IAAI,GACP,WAAoD,CAAC,OAAO;IAC5D,WAAsC,CAAC;AAE1C,MAAM,EAAE,GAAU;IAChB,QAAQ,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC;IACrC,GAAG,EAAE,CAAC,IAAI,EAAE,EAAE;QACZ,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC1B,CAAC;IACD,GAAG,EAAE,CAAC,IAAI,EAAE,EAAE;QACZ,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC1B,CAAC;CACF,CAAC;AAEF,KAAK,UAAU,IAAI;IACjB,IAAI,CAAC;QACH,IAAI,CAAC,QAAQ,GAAG,MAAM,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;IAClE,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,6FAA6F;QAC7F,4CAA4C;QAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,IAAI,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QAC5F,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,YAAY,OAAO,IAAI,CAAC,CAAC;QAC3C,IAAI,CAAC,QAAQ,GAAG,CAAC,CAAC;IACpB,CAAC;AACH,CAAC;AAED,8FAA8F;AAC9F,+FAA+F;AAC/F,6DAA6D;AAC7D,KAAK,IAAI,EAAE,CAAC"}
+{"version":3,"file":"cli.js","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;;;;;;;GAYG;AAEH,8FAA8F;AAC9F,2FAA2F;AAC3F,OAAO,KAAK,cAAc,MAAM,kBAAkB,CAAC;AACnD,qDAAqD;AACrD,uFAAuF;AACvF,OAAO,KAAK,WAAW,MAAM,cAAc,CAAC;AAC5C,OAAO,EAAc,aAAa,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AAC5E,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAYzC,MAAM,EAAE,GAAW,cAAmC,CAAC;AACvD,MAAM,IAAI,GACP,WAAoD,CAAC,OAAO;IAC5D,WAAsC,CAAC;AAE1C,MAAM,EAAE,GAAU;IAChB,QAAQ,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC;IACrC,GAAG,EAAE,CAAC,IAAI,EAAE,EAAE;QACZ,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC1B,CAAC;IACD,GAAG,EAAE,CAAC,IAAI,EAAE,EAAE;QACZ,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC1B,CAAC;CACF,CAAC;AAEF,KAAK,UAAU,IAAI;IACjB,IAAI,CAAC;QACH,IAAI,CAAC,QAAQ,GAAG,MAAM,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;IAClE,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,6FAA6F;QAC7F,4CAA4C;QAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,IAAI,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QAC5F,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,YAAY,OAAO,IAAI,CAAC,CAAC;QAC3C,4FAA4F;QAC5F,0FAA0F;QAC1F,gBAAgB;QAChB,IAAI,CAAC,QAAQ,GAAG,KAAK,YAAY,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACzD,CAAC;AACH,CAAC;AAED,8FAA8F;AAC9F,+FAA+F;AAC/F,6DAA6D;AAC7D,KAAK,IAAI,EAAE,CAAC"}

package/dist/constants.d.ts

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.2.25";
+export declare const VERSION = "0.2.28";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.2.25';
+export const VERSION = '0.2.28';
 //# sourceMappingURL=constants.js.map

package/dist/diagnostics/format.d.ts

@@ -12,6 +12,21 @@ import type { EdfDiagnostic } from '../types.js';
 export interface FormatDiagnosticsOptions {
     readonly color?: boolean;
     readonly maxItems?: number;
+    /**
+     * Field names whose CONTENT must not appear in the output — `['patientId', 'recordingId']` is
+     * the one that matters.
+     *
+     * A diagnostic names the raw bytes as written, by design: that is what makes a report
+     * actionable. For an identification field those bytes are a person's name and birth date, and
+     * a diagnostic about them is not rare — a writer that packs the name into one token is
+     * non-conformant, which is exactly the file someone runs a tool on and pastes the output of.
+     * Withholding `header.patient` while the diagnostic below it spells the same string out is not
+     * withholding it at all.
+     *
+     * The diagnostic still appears in full otherwise: code, severity, byte offset, the rule, and
+     * the next step. Only the value is replaced, so the report still says what is wrong and where.
+     */
+    readonly redactFields?: readonly string[];
 }
 /**
  * A multi-line report, one block per diagnostic. Returns `''` for an empty list so the result

package/dist/diagnostics/format.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"format.d.ts","sourceRoot":"","sources":["../../src/diagnostics/format.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAe,MAAM,aAAa,CAAC;AAE9D,MAAM,WAAW,wBAAwB;IACvC,QAAQ,CAAC,KAAK,CAAC,EAAE,OAAO,CAAC;IACzB,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;CAC5B;AAgBD;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,WAAW,EAAE,SAAS,aAAa,EAAE,EACrC,OAAO,CAAC,EAAE,wBAAwB,GACjC,MAAM,CAgBR"}
+{"version":3,"file":"format.d.ts","sourceRoot":"","sources":["../../src/diagnostics/format.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAe,MAAM,aAAa,CAAC;AAE9D,MAAM,WAAW,wBAAwB;IACvC,QAAQ,CAAC,KAAK,CAAC,EAAE,OAAO,CAAC;IACzB,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAC3B;;;;;;;;;;;;;OAaG;IACH,QAAQ,CAAC,YAAY,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;CAC3C;AAgBD;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,WAAW,EAAE,SAAS,aAAa,EAAE,EACrC,OAAO,CAAC,EAAE,wBAAwB,GACjC,MAAM,CAkBR"}

package/dist/diagnostics/format.js

@@ -26,12 +26,13 @@ export function formatDiagnostics(diagnostics, options) {
     const color = options?.color === true;
     const shown = resolveLimit(options?.maxItems, diagnostics.length);
     const lines = [];
+    const redact = new Set(options?.redactFields ?? []);
     for (let i = 0; i < shown; i++) {
         const diagnostic = diagnostics[i];
         // i < shown <= diagnostics.length, so this only satisfies noUncheckedIndexedAccess.
         if (diagnostic === undefined)
             continue;
-        appendDiagnostic(lines, diagnostic, color);
+        appendDiagnostic(lines, diagnostic, color, redact);
     }
     const hidden = diagnostics.length - shown;
     if (hidden > 0)
@@ -43,7 +44,37 @@ function resolveLimit(maxItems, total) {
         return total;
     return Math.max(0, Math.min(total, Math.floor(maxItems)));
 }
-function appendDiagnostic(lines, diagnostic, color) {
+const REDACTED = '[redacted]';
+/**
+ * Removes a field's content from every place `appendDiagnostic` would print it.
+ *
+ * The message is prose with the value interpolated into it, so the value is substituted out by
+ * text rather than by re-rendering the message: the raw string is known exactly, and both its
+ * padded and trimmed spellings are removed. `rawBytes` is dropped outright — it is the field's
+ * literal bytes, and a hex dump with an ASCII column is not a redaction of anything.
+ *
+ * Substitution is done on the value, never on the code or the rule, so what is left still
+ * identifies the problem: `[PATIENT_ID_NONCONFORMANT] ... at byte offset 8` remains readable.
+ */
+function redactDiagnostic(diagnostic) {
+    const raw = diagnostic.raw;
+    let message = diagnostic.message;
+    if (raw !== undefined) {
+        for (const spelling of [JSON.stringify(raw), JSON.stringify(raw.trim()), raw, raw.trim()]) {
+            if (spelling.length > 0)
+                message = message.split(spelling).join(REDACTED);
+        }
+    }
+    return {
+        ...diagnostic,
+        message,
+        raw: raw === undefined ? undefined : REDACTED,
+        rawBytes: undefined,
+        actual: diagnostic.actual === undefined ? undefined : REDACTED,
+    };
+}
+function appendDiagnostic(lines, input, color, redactFields) {
+    const diagnostic = input.field !== undefined && redactFields.has(input.field) ? redactDiagnostic(input) : input;
     const marker = paint(`${diagnostic.severity} [${diagnostic.code}]`, SEVERITY_COLORS[diagnostic.severity], color);
     const messageLines = diagnostic.message.split('\n');
     const first = messageLines[0] ?? '';

package/dist/diagnostics/format.js.map

@@ -1 +1 @@
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+{"version":3,"file":"format.js","sourceRoot":"","sources":["../../src/diagnostics/format.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAwBH,MAAM,MAAM,GAAG,IAAI,CAAC;AAEpB,kFAAkF;AAClF,MAAM,mBAAmB,GAAG,EAAE,CAAC;AAE/B,MAAM,UAAU,GAAG,WAAW,CAAC;AAC/B,MAAM,QAAQ,GAAG,WAAW,CAAC;AAE7B,MAAM,eAAe,GAA0C;IAC7D,KAAK,EAAE,YAAY;IACnB,OAAO,EAAE,YAAY;IACrB,IAAI,EAAE,YAAY;CACnB,CAAC;AAEF;;;GAGG;AACH,MAAM,UAAU,iBAAiB,CAC/B,WAAqC,EACrC,OAAkC;IAElC,MAAM,KAAK,GAAG,OAAO,EAAE,KAAK,KAAK,IAAI,CAAC;IACtC,MAAM,KAAK,GAAG,YAAY,CAAC,OAAO,EAAE,QAAQ,EAAE,WAAW,CAAC,MAAM,CAAC,CAAC;IAClE,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,MAAM,MAAM,GAAG,IAAI,GAAG,CAAC,OAAO,EAAE,YAAY,IAAI,EAAE,CAAC,CAAC;IAEpD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,EAAE,EAAE,CAAC;QAC/B,MAAM,UAAU,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC;QAClC,oFAAoF;QACpF,IAAI,UAAU,KAAK,SAAS;YAAE,SAAS;QACvC,gBAAgB,CAAC,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,CAAC,CAAC;IACrD,CAAC;IAED,MAAM,MAAM,GAAG,WAAW,CAAC,MAAM,GAAG,KAAK,CAAC;IAC1C,IAAI,MAAM,GAAG,CAAC;QAAE,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,WAAW,MAAM,OAAO,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAC,CAAC;IAE7E,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,SAAS,YAAY,CAAC,QAA4B,EAAE,KAAa;IAC/D,IAAI,QAAQ,KAAK,SAAS,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,QAAQ,CAAC;QAAE,OAAO,KAAK,CAAC;IACvE,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;AAC5D,CAAC;AAED,MAAM,QAAQ,GAAG,YAAY,CAAC;AAE9B;;;;;;;;;;GAUG;AACH,SAAS,gBAAgB,CAAC,UAAyB;IACjD,MAAM,GAAG,GAAG,UAAU,CAAC,GAAG,CAAC;IAC3B,IAAI,OAAO,GAAG,UAAU,CAAC,OAAO,CAAC;IACjC,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,KAAK,MAAM,QAAQ,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,CAAC,IAAI,EAAE,CAAC,EAAE,CAAC;YAC1F,IAAI,QAAQ,CAAC,MAAM,GAAG,CAAC;gBAAE,OAAO,GAAG,OAAO,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC5E,CAAC;IACH,CAAC;IACD,OAAO;QACL,GAAG,UAAU;QACb,OAAO;QACP,GAAG,EAAE,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ;QAC7C,QAAQ,EAAE,SAAS;QACnB,MAAM,EAAE,UAAU,CAAC,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ;KAC/D,CAAC;AACJ,CAAC;AAED,SAAS,gBAAgB,CACvB,KAAe,EACf,KAAoB,EACpB,KAAc,EACd,YAAiC;IAEjC,MAAM,UAAU,GACd,KAAK,CAAC,KAAK,KAAK,SAAS,IAAI,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;IAC/F,MAAM,MAAM,GAAG,KAAK,CAClB,GAAG,UAAU,CAAC,QAAQ,KAAK,UAAU,CAAC,IAAI,GAAG,EAC7C,eAAe,CAAC,UAAU,CAAC,QAAQ,CAAC,EACpC,KAAK,CACN,CAAC;IAEF,MAAM,YAAY,GAAG,UAAU,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IACpD,MAAM,KAAK,GAAG,YAAY,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IACpC,KAAK,CAAC,IAAI,CAAC,GAAG,MAAM,IAAI,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC,CAAC;IAC3C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QAC7C,MAAM,IAAI,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC;QAC7B,IAAI,IAAI,KAAK,SAAS;YAAE,SAAS;QACjC,KAAK,CAAC,IAAI,CAAC,GAAG,MAAM,GAAG,IAAI,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IACxC,CAAC;IAED,MAAM,QAAQ,GAAG,UAAU,CAAC,UAAU,CAAC,CAAC;IACxC,IAAI,QAAQ,KAAK,SAAS;QAAE,MAAM,CAAC,KAAK,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAC;IAC3D,IAAI,UAAU,CAAC,GAAG,KAAK,SAAS;QAAE,MAAM,CAAC,KAAK,EAAE,QAAQ,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC;IACxF,IAAI,UAAU,CAAC,QAAQ,KAAK,SAAS,IAAI,UAAU,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACxE,MAAM,CAAC,KAAK,EAAE,UAAU,OAAO,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC;IACjE,CAAC;IACD,IAAI,UAAU,CAAC,QAAQ,KAAK,SAAS;QAAE,MAAM,CAAC,KAAK,EAAE,aAAa,UAAU,CAAC,QAAQ,EAAE,EAAE,KAAK,CAAC,CAAC;IAChG,IAAI,UAAU,CAAC,MAAM,KAAK,SAAS;QAAE,MAAM,CAAC,KAAK,EAAE,WAAW,UAAU,CAAC,MAAM,EAAE,EAAE,KAAK,CAAC,CAAC;IAC1F,IAAI,UAAU,CAAC,aAAa,KAAK,SAAS,EAAE,CAAC;QAC3C,MAAM,CAAC,KAAK,EAAE,SAAS,UAAU,CAAC,aAAa,EAAE,EAAE,KAAK,CAAC,CAAC;IAC5D,CAAC;AACH,CAAC;AAED,SAAS,MAAM,CAAC,KAAe,EAAE,IAAY,EAAE,KAAc;IAC3D,KAAK,CAAC,IAAI,CAAC,GAAG,MAAM,GAAG,KAAK,CAAC,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,CAAC;AACzD,CAAC;AAED,SAAS,UAAU,CAAC,UAAyB;IAC3C,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,IAAI,UAAU,CAAC,UAAU,KAAK,SAAS,EAAE,CAAC;QACxC,KAAK,CAAC,IAAI,CACR,UAAU,CAAC,UAAU,KAAK,SAAS;YACjC,CAAC,CAAC,eAAe,UAAU,CAAC,UAAU,EAAE;YACxC,CAAC,CAAC,eAAe,UAAU,CAAC,UAAU,KAAK,UAAU,CAAC,UAAU,SAAS,CAC5E,CAAC;IACJ,CAAC;IACD,IAAI,UAAU,CAAC,KAAK,KAAK,SAAS;QAAE,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC;IACjE,IAAI,UAAU,CAAC,WAAW,KAAK,SAAS;QAAE,KAAK,CAAC,IAAI,CAAC,UAAU,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC;IACzF,IAAI,UAAU,CAAC,WAAW,KAAK,SAAS;QAAE,KAAK,CAAC,IAAI,CAAC,UAAU,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC;IACzF,OAAO,KAAK,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;AACnE,CAAC;AAED,4FAA4F;AAC5F,SAAS,OAAO,CAAC,KAAiB;IAChC,MAAM,KAAK,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,EAAE,mBAAmB,CAAC,CAAC;IACrD,MAAM,GAAG,GAAa,EAAE,CAAC;IACzB,IAAI,KAAK,GAAG,EAAE,CAAC;IACf,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;QAC7C,KAAK,IAAI,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;IACpE,CAAC;IACD,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,MAAM,CAAC;IAC3C,OAAO,GAAG,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package/dist/format-report.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"format-report.d.ts","sourceRoot":"","sources":["../src/format-report.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAIH,OAAO,KAAK,EAAE,SAAS,EAAE,mBAAmB,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AASnF;;;;;GAKG;AACH,wBAAgB,sBAAsB,CACpC,MAAM,EAAE,gBAAgB,EACxB,OAAO,CAAC,EAAE,mBAAmB,GAC5B,MAAM,CA4DR;AAED,qFAAqF;AACrF,YAAY,EAAE,SAAS,EAAE,CAAC"}
+{"version":3,"file":"format-report.d.ts","sourceRoot":"","sources":["../src/format-report.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAIH,OAAO,KAAK,EAAE,SAAS,EAAE,mBAAmB,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AASnF;;;;;GAKG;AACH,wBAAgB,sBAAsB,CACpC,MAAM,EAAE,gBAAgB,EACxB,OAAO,CAAC,EAAE,mBAAmB,GAC5B,MAAM,CAiER;AAED,qFAAqF;AACrF,YAAY,EAAE,SAAS,EAAE,CAAC"}

package/dist/format-report.js

@@ -66,7 +66,10 @@ export function formatValidationReport(report, options) {
     if (report.diagnostics.length > 0) {
         const maxItems = options?.maxItems ?? DEFAULT_MAX_ITEMS;
         lines.push('');
-        lines.push(formatDiagnostics(report.diagnostics, { maxItems }));
+        lines.push(formatDiagnostics(report.diagnostics, {
+            maxItems,
+            ...(options?.redactFields === undefined ? {} : { redactFields: options.redactFields }),
+        }));
     }
     return lines.join('\n');
 }

package/dist/format-report.js.map

@@ -1 +1 @@
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package/dist/recording.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"recording.d.ts","sourceRoot":"","sources":["../src/recording.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAUH,OAAO,KAAK,EACV,UAAU,EACV,wBAAwB,EACxB,oBAAoB,EACpB,QAAQ,EAER,MAAM,EACN,SAAS,EACT,cAAc,EACd,YAAY,EACZ,SAAS,EACT,WAAW,EACX,WAAW,EACX,WAAW,EACX,eAAe,EACf,eAAe,EAChB,MAAM,YAAY,CAAC;AAEpB;;;;;GAKG;AACH,wBAAsB,OAAO,CAAC,MAAM,EAAE,UAAU,EAAE,OAAO,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,YAAY,CAAC,CAI9F;AAED;;;;;;;;;GASG;AACH,wBAAgB,cAAc,CAC5B,MAAM,EAAE,SAAS,EACjB,aAAa,EAAE,SAAS,MAAM,EAAE,GAC/B,SAAS,SAAS,EAAE,CA2BtB;AAED;;;;;;;;GAQG;AACH,wBAAgB,SAAS,CAAC,KAAK,EAAE,cAAc,EAAE,WAAW,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAQxF;AAuED,kGAAkG;AAClG,wBAAsB,WAAW,CAC/B,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,eAAe,EAC1B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,QAAQ,CAAC,CAEnB;AAED;;;;;;;;;;;;;;GAcG;AACH,wBAAsB,UAAU,CAC9B,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,eAAe,EAC1B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,QAAQ,EAAE,CAAC,CA2B9B;AAED;;;;;;GAMG;AACH,wBAAsB,eAAe,CACnC,SAAS,EAAE,YAAY,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GAAG,WAAW,GAC/C,OAAO,CAAC,oBAAoB,CAAC,CAG/B"}
+{"version":3,"file":"recording.d.ts","sourceRoot":"","sources":["../src/recording.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAUH,OAAO,KAAK,EACV,UAAU,EACV,wBAAwB,EACxB,oBAAoB,EACpB,QAAQ,EAER,MAAM,EACN,SAAS,EACT,cAAc,EACd,YAAY,EACZ,SAAS,EACT,WAAW,EACX,WAAW,EACX,WAAW,EACX,eAAe,EACf,eAAe,EAChB,MAAM,YAAY,CAAC;AAEpB;;;;;GAKG;AACH,wBAAsB,OAAO,CAAC,MAAM,EAAE,UAAU,EAAE,OAAO,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,YAAY,CAAC,CAI9F;AAED;;;;;;;;;GASG;AACH,wBAAgB,cAAc,CAC5B,MAAM,EAAE,SAAS,EACjB,aAAa,EAAE,SAAS,MAAM,EAAE,GAC/B,SAAS,SAAS,EAAE,CA2BtB;AAED;;;;;;;;GAQG;AACH,wBAAgB,SAAS,CAAC,KAAK,EAAE,cAAc,EAAE,WAAW,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAQxF;AAuED,kGAAkG;AAClG,wBAAsB,WAAW,CAC/B,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,eAAe,EAC1B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,QAAQ,CAAC,CAEnB;AAED;;;;;;;;;;;;;;GAcG;AACH,wBAAsB,UAAU,CAC9B,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,eAAe,EAC1B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,QAAQ,EAAE,CAAC,CA2B9B;AAED;;;;;;GAMG;AACH,wBAAsB,eAAe,CACnC,SAAS,EAAE,YAAY,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GAAG,WAAW,GAC/C,OAAO,CAAC,oBAAoB,CAAC,CAU/B"}

package/dist/recording.js

@@ -198,6 +198,13 @@ export async function readWindow(recording, selection, options) {
  */
 export async function readAnnotations(recording, records, options) {
     const bytes = await readRecordBytes(recording.source, recording.header, records, options);
-    return decodeAnnotations(recording.header, bytes, records, options);
+    // The timeline knows record 0's sub-second start offset; a range that does not contain record 0
+    // cannot derive it, and on an EDF+D file the derivation gives a value outside [0, 1) and the
+    // rebasing switches off. Passing it makes the same annotation read the same way from a partial
+    // decode as from a whole-file one — which is the point of `readAnnotations(edf, chunk.records)`.
+    return decodeAnnotations(recording.header, bytes, records, {
+        startOffsetTicks: recording.timeline.startOffsetTicks,
+        ...options,
+    });
 }
 //# sourceMappingURL=recording.js.map

package/dist/recording.js.map

@@ -1 +1 @@
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+{"version":3,"file":"recording.js","sourceRoot":"","sources":["../src/recording.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAEH,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,EAAE,uBAAuB,EAAE,MAAM,aAAa,CAAC;AACtD,OAAO,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAClD,OAAO,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAC;AACzD,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAChD,OAAO,EAAE,yBAAyB,EAAE,MAAM,oBAAoB,CAAC;AAC/D,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AAmBrD;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,OAAO,CAAC,MAAkB,EAAE,OAAqB;IACrE,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjD,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,MAAM,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;IACzE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,CAAC;AAC7C,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,UAAU,cAAc,CAC5B,MAAiB,EACjB,aAAgC;IAEhC,MAAM,IAAI,GAAG,IAAI,GAAG,EAAU,CAAC;IAC/B,MAAM,OAAO,GAAgB,EAAE,CAAC;IAChC,KAAK,MAAM,WAAW,IAAI,aAAa,EAAE,CAAC;QACxC,IAAI,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC;YAAE,SAAS;QACpC,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,CAAC;QAEtB,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;QAC3C,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;YACzB,MAAM,IAAI,uBAAuB,CAC/B,eAAe,WAAW,mBAAmB,MAAM,CAAC,OAAO,CAAC,MAAM,qBAAqB;gBACrF,mFAAmF;gBACnF,2BAA2B,EAC7B,EAAE,QAAQ,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAC/E,CAAC;QACJ,CAAC;QACD,IAAI,MAAM,CAAC,IAAI,KAAK,aAAa,EAAE,CAAC;YAClC,MAAM,IAAI,UAAU,CAClB,UAAU,WAAW,KAAK,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC,+BAA+B;gBACnF,kFAAkF;gBAClF,iFAAiF;gBACjF,+DAA+D,CAClE,CAAC;QACJ,CAAC;QACD,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IACvB,CAAC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,SAAS,CAAC,KAAqB,EAAE,WAAmB;IAClE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC;IACjC,IAAI,QAAQ,KAAK,SAAS,IAAI,IAAI,KAAK,SAAS;QAAE,OAAO,SAAS,CAAC;IACnE,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,MAAM,KAAK,GAAG,QAAQ,CAAC,GAAG,CAAC,iBAAiB,CAAC,CAAC;QAC9C,IAAI,KAAK,KAAK,SAAS,IAAI,KAAK,CAAC,OAAO,CAAC,KAAK,KAAK,WAAW;YAAE,OAAO,GAAG,CAAC;IAC7E,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED;;;;;;;GAOG;AACH,KAAK,UAAU,SAAS,CACtB,SAAuB,EACvB,OAAoB,EACpB,aAAgC,EAChC,OAAqB;IAErB,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,SAAS,CAAC;IACtD,MAAM,OAAO,GAAG,cAAc,CAAC,MAAM,EAAE,aAAa,CAAC,CAAC;IAEtD,MAAM,KAAK,GAAG,MAAM,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;IACtE,MAAM,UAAU,GAAG,MAAM,CAAC,gBAAgB,GAAG,OAAO,CAAC,KAAK,GAAG,MAAM,CAAC,gBAAgB,CAAC;IAErF,6FAA6F;IAC7F,0FAA0F;IAC1F,6FAA6F;IAC7F,+FAA+F;IAC/F,uFAAuF;IACvF,4FAA4F;IAC5F,4FAA4F;IAC5F,gEAAgE;IAChE,MAAM,WAAW,GAAG,iBAAiB,CAAC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE;QAC5D,WAAW,EAAE,QAAQ,CAAC,gBAAgB;KACvC,CAAC,CAAC;IACH,MAAM,MAAM,GAAG,WAAW,CAAC,gBAAgB,CAAC;IAC5C,yBAAyB,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,CAAC,CAAC;IAEjD,MAAM,aAAa,GAAG,MAAM,CAAC,mBAAmB,CAAC;IACjD,MAAM,iBAAiB,GAAG,QAAQ,CAAC,gBAAgB,GAAG,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,GAAG,aAAa,CAAC;IAC5F,MAAM,eAAe,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,iBAAiB,CAAC;IACvD,MAAM,cAAc,GAClB,OAAO,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,CAAC,IAAI,eAAe,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC;IACvF,MAAM,UAAU,GAAG,eAAe,GAAG,QAAQ,CAAC,gBAAgB,CAAC;IAC/D,8FAA8F;IAC9F,yFAAyF;IACzF,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,cAAc,GAAG,aAAa,GAAG,eAAe,CAAC,CAAC,CAAC,EAAE,CAAC;IAC5F,MAAM,YAAY,GAAG,cAAc,CAAC,UAAU,CAAC,CAAC;IAEhD,MAAM,YAAY,GAAqB,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE;QAC5D,MAAM,OAAO,GAAG,oBAAoB,CAAC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,MAAM,CAAC,KAAK,EAAE,SAAS,EAAE,OAAO,CAAC,CAAC;QAC/F,OAAO;YACL,WAAW,EAAE,MAAM,CAAC,KAAK;YACzB,WAAW,EAAE,OAAO,CAAC,OAAO,CAAC,MAAM;YACnC,OAAO,EAAE,OAAO,CAAC,OAAO;YACxB,gBAAgB,EAAE,OAAO,CAAC,KAAK,GAAG,MAAM,CAAC,gBAAgB;YACzD,YAAY;YACZ,sBAAsB,EAAE,OAAO,CAAC,sBAAsB;SACvD,CAAC;IACJ,CAAC,CAAC,CAAC;IAEH,OAAO;QACL,OAAO;QACP,YAAY;QACZ,eAAe,EAAE,cAAc,CAAC,SAAS,CAAC;QAC1C,UAAU;QACV,UAAU,EAAE,KAAK,CAAC,MAAM;QACxB,OAAO,EAAE,MAAM,CAAC,MAAM,CAAC,YAAY,CAAC;QACpC,aAAa,EAAE,SAAS,CAAC,KAAK,EAAE,OAAO,CAAC,KAAK,CAAC;QAC9C,WAAW,EAAE,WAAW,CAAC,WAAW;KACrC,CAAC;AACJ,CAAC;AAED,kGAAkG;AAClG,MAAM,CAAC,KAAK,UAAU,WAAW,CAC/B,SAAuB,EACvB,SAA0B,EAC1B,OAAqB;IAErB,OAAO,SAAS,CAAC,SAAS,EAAE,SAAS,CAAC,OAAO,EAAE,SAAS,CAAC,aAAa,EAAE,OAAO,CAAC,CAAC;AACnF,CAAC;AAED;;;;;;;;;;;;;;GAcG;AACH,MAAM,CAAC,KAAK,UAAU,UAAU,CAC9B,SAAuB,EACvB,SAA0B,EAC1B,OAAqB;IAErB;;;;;;;;;;;OAWG;IACH,cAAc,CAAC,SAAS,CAAC,MAAM,EAAE,SAAS,CAAC,aAAa,CAAC,CAAC;IAE1D,MAAM,MAAM,GAAG,iBAAiB,CAC9B,SAAS,CAAC,QAAQ,EAClB,SAAS,CAAC,KAAK,EACf,SAAS,CAAC,YAAY,EACtB,SAAS,CAAC,eAAe,CAC1B,CAAC;IAEF,MAAM,MAAM,GAAe,EAAE,CAAC;IAC9B,KAAK,MAAM,OAAO,IAAI,MAAM,EAAE,CAAC;QAC7B,MAAM,CAAC,IAAI,CAAC,MAAM,SAAS,CAAC,SAAS,EAAE,OAAO,EAAE,SAAS,CAAC,aAAa,EAAE,OAAO,CAAC,CAAC,CAAC;IACrF,CAAC;IACD,OAAO,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;AAC/B,CAAC;AAED;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,eAAe,CACnC,SAAuB,EACvB,OAAoB,EACpB,OAAgD;IAEhD,MAAM,KAAK,GAAG,MAAM,eAAe,CAAC,SAAS,CAAC,MAAM,EAAE,SAAS,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;IAC1F,gGAAgG;IAChG,6FAA6F;IAC7F,+FAA+F;IAC/F,iGAAiG;IACjG,OAAO,iBAAiB,CAAC,SAAS,CAAC,MAAM,EAAE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package/dist/tal/annotations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAqSrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAgJtB"}
+{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/tal/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AAMH,OAAO,KAAK,EACV,wBAAwB,EAExB,oBAAoB,EACpB,SAAS,EAET,WAAW,EACZ,MAAM,aAAa,CAAC;AAqSrB,wBAAgB,iBAAiB,CAC/B,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,WAAW,EACpB,OAAO,CAAC,EAAE,wBAAwB,GACjC,oBAAoB,CAiJtB"}

package/dist/tal/annotations.js

@@ -334,7 +334,7 @@ export function decodeAnnotations(header, recordBytes, records, options) {
         recordOnsetTicks[position] =
             observed ?? saturateToInt64(baseTicks + BigInt(records.start + position) * durationTicks);
     }
-    const startOffsetTicks = resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTicks, firstObserved);
+    const startOffsetTicks = resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTicks, firstObserved, options);
     pending.sort(compareAnnotations);
     const annotations = pending.map((item) => ({
         onsetSecondsFromHeaderStart: ticksToSeconds(item.onsetTicks),
@@ -379,7 +379,7 @@ export function decodeAnnotations(header, recordBytes, records, options) {
  * diagnostic there would make `strict` reject every conformant discontinuous recording — the
  * record-index probes read exactly one late record.
  */
-function resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTicks, firstObserved) {
+function resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTicks, firstObserved, options) {
     if (records.count === 0)
         return 0n;
     const origin = firstObserved === undefined
@@ -388,6 +388,12 @@ function resolveStartOffsetTicks(sink, header, records, recordOnsetTicks, baseTi
             ? `raw timekeeping onset "${firstObserved.raw}"`
             : `derived from record ${firstObserved.recordIndex}, timekeeping onset ` +
                 `"${firstObserved.raw}"`;
+    // A caller who knows the file's own offset outranks any derivation: the offset is a property of
+    // the recording, and deriving it from an observed onset only works while the records in between
+    // are contiguous. `readAnnotations` always knows it, from the timeline.
+    const supplied = options?.startOffsetTicks;
+    if (supplied !== undefined)
+        return supplied;
     if (records.start === 0) {
         const onset = recordOnsetTicks[0] ?? 0n;
         if (onset < 0n || onset >= TICKS_PER_SECOND) {

package/dist/tal/annotations.js.map

@@ -1 +1 @@
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package/dist/types.d.ts

@@ -361,6 +361,12 @@ export interface FormatReportOptions {
     readonly header?: EdfHeader;
     /** Individual diagnostics to print. Defaults to 20 — the counts above them are the summary. */
     readonly maxItems?: number;
+    /**
+     * Forwarded to `formatDiagnostics`. Pass `['patientId', 'recordingId']` for a report that will
+     * be pasted somewhere: a non-conformant identification field is reported with its content, and
+     * that content is a person's name.
+     */
+    readonly redactFields?: readonly string[];
 }
 export interface FormatHeaderOptions {
     /** Off by default: a header carries a name and a birth date, and a summary gets pasted around. */
@@ -495,6 +501,21 @@ export interface WindowSelection {
 export interface DecodeAnnotationsOptions extends ParseOptions {
     /** Defaults to every annotation signal. Only the first carries timekeeping. */
     readonly signalIndices?: readonly number[];
+    /**
+     * Record 0's sub-second start offset, in ticks — the origin `onsetTicksFromFirstRecord` and
+     * `onsetSecondsFromFirstRecord` are measured from.
+     *
+     * This is a property of the FILE, not of the range being decoded, but a range that does not
+     * contain record 0 cannot see it: the derivation from an observed onset only works when the
+     * records in between are contiguous, so on an EDF+D file it produces a value outside [0, 1) and
+     * the rebasing switches off. The same annotation then reads one way from a whole-file decode and
+     * another from a partial one, differing by the offset — while `readWindow` reports the record's
+     * true start either way.
+     *
+     * `readAnnotations` passes `timeline.startOffsetTicks` for you. Pass it yourself when calling
+     * `decodeAnnotations` directly on a range that does not start at record 0.
+     */
+    readonly startOffsetTicks?: bigint;
     /**
      * The recording's own time origin, for deriving the onset of a record whose timekeeping TAL
      * is missing.

package/dist/types.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.2.25",
+  "version": "0.2.28",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/cli-run.ts

@@ -17,6 +17,27 @@ import { buildRecordIndex } from './record-index.js';
 import { openEdf, readAnnotations } from './recording.js';
 import { validateRecording } from './validate.js';
 
+/**
+ * A mistake in the command line, as opposed to a mistake in the file.
+ *
+ * The documented exit codes are 0 success, 1 the file is unreadable or failed validation, 2 bad
+ * usage — and a script gates on them without parsing output. `parseArgs` used to throw a plain
+ * `RangeError`, which `cli.ts` caught with everything else and reported as 1, so `--limit all` was
+ * indistinguishable from a corrupt recording. This type is what lets the shell tell them apart.
+ *
+ * It EXTENDS `RangeError` rather than `Error`, so a caller who was already catching `RangeError`
+ * from `parseArgs` — the package's convention for a caller mistake, and what the existing test
+ * pins — keeps working unchanged. The new class narrows that, it does not replace it.
+ */
+export class CliUsageError extends RangeError {
+  readonly usage = true as const;
+
+  constructor(message: string) {
+    super(message);
+    this.name = 'CliUsageError';
+  }
+}
+
 /** Everything the CLI touches outside itself. */
 export interface CliIo {
   readFile(path: string): Promise<Uint8Array>;
@@ -34,6 +55,7 @@ const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
   npx edfcore json <file>         the header as JSON, for piping into jq
 
 Options
+  --help, -h                      print this and exit 0
   --patient                       include patient identification (header, json)
   --list                          list events one per line instead of counting (events)
   --limit <n>                     individual diagnostics or events to print (default 20)
@@ -49,6 +71,7 @@ export interface Args {
   readonly patient: boolean;
   readonly list: boolean;
   readonly version: boolean;
+  readonly help: boolean;
   readonly limit: number | undefined;
 }
 
@@ -57,6 +80,7 @@ export function parseArgs(argv: readonly string[]): Args {
   let patient = false;
   let list = false;
   let version = false;
+  let help = false;
   let limit: number | undefined;
 
   for (let i = 0; i < argv.length; i += 1) {
@@ -64,18 +88,59 @@ export function parseArgs(argv: readonly string[]): Args {
     if (arg === '--patient') patient = true;
     else if (arg === '--list') list = true;
     else if (arg === '--version' || arg === '-v') version = true;
+    else if (arg === '--help' || arg === '-h') help = true;
     else if (arg === '--limit') {
       const value = Number(argv[i + 1]);
       // A NaN limit would disable the cap silently, which is the opposite of what was asked for.
       if (!Number.isSafeInteger(value) || value < 0) {
-        throw new RangeError(`--limit needs a whole number, received ${String(argv[i + 1])}`);
+        throw new CliUsageError(
+          `--limit needs a whole number, received ${String(argv[i + 1])}. Next: pass a count, ` +
+            'or omit --limit for the default of 20.',
+        );
       }
       limit = value;
       i += 1;
-    } else if (arg !== undefined && !arg.startsWith('-')) positional.push(arg);
+    } else if (arg?.startsWith('-')) {
+      // An unrecognised flag is bad usage, not something to ignore: a misspelled --patinet would
+      // otherwise print the output the caller was trying to avoid, quietly and with exit 0.
+      throw new CliUsageError(
+        `unknown option ${JSON.stringify(arg)}. Next: run \`edfcore --help\` for the list.`,
+      );
+    } else if (arg !== undefined) positional.push(arg);
+  }
+
+  if (positional.length > 2) {
+    // Silently dropping the rest is the dangerous shape: `edfcore validate *.edf` would check the
+    // first file, exit 0, and report success for every other file the shell expanded — in a CI
+    // gate, which is what the exit code exists for.
+    throw new CliUsageError(
+      `expected one file, received ${positional.length - 1}: ` +
+        `${positional
+          .slice(1)
+          .map((value) => JSON.stringify(value))
+          .join(', ')}. ` +
+        'edfcore reads one file per invocation. Next: loop in the shell — ' +
+        'for f in *.edf; do edfcore validate "$f" || exit 1; done',
+    );
   }
 
-  return { command: positional[0], file: positional[1], patient, list, version, limit };
+  return { command: positional[0], file: positional[1], patient, list, version, help, limit };
+}
+
+/**
+ * What `--patient` actually has to gate.
+ *
+ * Withholding the identification line from `formatHeader` is not enough on its own. A diagnostic
+ * names the raw bytes as written — that is the message contract, and it is what makes a report
+ * actionable — so a NON-CONFORMANT identification field gets its whole content printed in the
+ * diagnostics block underneath. That is not a rare file: a writer that packs the name into a
+ * single token fails the EDF+ grammar, and a file that behaves oddly is exactly the one someone
+ * runs `edfcore header` on and pastes into an issue.
+ *
+ * So the two must be gated together, by the same flag, in every command that prints either.
+ */
+function redaction(args: Args): { redactFields?: readonly string[] } {
+  return args.patient ? {} : { redactFields: ['patientId', 'recordingId'] };
 }
 
 async function open(io: CliIo, file: string) {
@@ -92,9 +157,17 @@ export async function runCli(args: Args, io: CliIo): Promise<number> {
     io.out(`${VERSION}\n`);
     return 0;
   }
-  if (command === undefined || command === 'help' || command === '--help') {
+  // `--help` is a FLAG, handled here alongside `--version`, because `parseArgs` never puts a
+  // dash-prefixed argument in `command`: the old `command === '--help'` branch could not be
+  // reached, so `edfcore --help` fell through to "no command" and exited 2 — on the first thing
+  // most people type.
+  if (args.help || command === 'help') {
     io.out(USAGE);
-    return command === undefined ? 2 : 0;
+    return 0;
+  }
+  if (command === undefined) {
+    io.out(USAGE);
+    return 2;
   }
   if (file === undefined) {
     io.err(`edfcore ${command}: no file given\n\n${USAGE}`);
@@ -107,7 +180,10 @@ export async function runCli(args: Args, io: CliIo): Promise<number> {
       io.out(`${formatHeader(recording.header, { includePatientId: args.patient })}\n`);
       if (recording.header.diagnostics.length > 0) {
         io.out(
-          `\n${formatDiagnostics(recording.header.diagnostics, { maxItems: args.limit ?? 20 })}\n`,
+          `\n${formatDiagnostics(recording.header.diagnostics, {
+            maxItems: args.limit ?? 20,
+            ...redaction(args),
+          })}\n`,
         );
       }
       return 0;
@@ -117,7 +193,11 @@ export async function runCli(args: Args, io: CliIo): Promise<number> {
       const recording = await open(io, file);
       const report = await validateRecording(recording, { scanSamples: true });
       io.out(
-        `${formatValidationReport(report, { header: recording.header, maxItems: args.limit ?? 20 })}\n`,
+        `${formatValidationReport(report, {
+          header: recording.header,
+          maxItems: args.limit ?? 20,
+          ...redaction(args),
+        })}\n`,
       );
       // Exit 1 on failure so a CI job can gate on it without parsing the output.
       return report.ok ? 0 : 1;

package/src/cli.ts

@@ -19,7 +19,7 @@ import * as nodeFsPromises from 'node:fs/promises';
 // biome-ignore lint/suspicious/noTsIgnore: as above.
 // @ts-ignore 'node:process' has no declarations under `types: []`; its shape is below.
 import * as nodeProcess from 'node:process';
-import { type CliIo, parseArgs, runCli } from './cli-run.js';
+import { type CliIo, CliUsageError, parseArgs, runCli } from './cli-run.js';
 import { isEdfError } from './errors.js';
 
 interface NodeFs {
@@ -55,7 +55,10 @@ async function main(): Promise<void> {
     // top of it would bury the one useful line.
     const message = isEdfError(error) || error instanceof Error ? error.message : String(error);
     proc.stderr.write(`edfcore: ${message}\n`);
-    proc.exitCode = 1;
+    // 2 is the documented code for bad usage and 1 for a file that could not be read. Reporting
+    // both as 1 makes a typo indistinguishable from a corrupt recording to the script that is
+    // gating on it.
+    proc.exitCode = error instanceof CliUsageError ? 2 : 1;
   }
 }
 

package/src/constants.ts

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.2.25';
+export const VERSION = '0.2.28';

package/src/diagnostics/format.ts

@@ -14,6 +14,21 @@ import type { EdfDiagnostic, EdfSeverity } from '../types.js';
 export interface FormatDiagnosticsOptions {
   readonly color?: boolean;
   readonly maxItems?: number;
+  /**
+   * Field names whose CONTENT must not appear in the output — `['patientId', 'recordingId']` is
+   * the one that matters.
+   *
+   * A diagnostic names the raw bytes as written, by design: that is what makes a report
+   * actionable. For an identification field those bytes are a person's name and birth date, and
+   * a diagnostic about them is not rare — a writer that packs the name into one token is
+   * non-conformant, which is exactly the file someone runs a tool on and pastes the output of.
+   * Withholding `header.patient` while the diagnostic below it spells the same string out is not
+   * withholding it at all.
+   *
+   * The diagnostic still appears in full otherwise: code, severity, byte offset, the rule, and
+   * the next step. Only the value is replaced, so the report still says what is wrong and where.
+   */
+  readonly redactFields?: readonly string[];
 }
 
 const INDENT = '  ';
@@ -42,11 +57,13 @@ export function formatDiagnostics(
   const shown = resolveLimit(options?.maxItems, diagnostics.length);
   const lines: string[] = [];
 
+  const redact = new Set(options?.redactFields ?? []);
+
   for (let i = 0; i < shown; i++) {
     const diagnostic = diagnostics[i];
     // i < shown <= diagnostics.length, so this only satisfies noUncheckedIndexedAccess.
     if (diagnostic === undefined) continue;
-    appendDiagnostic(lines, diagnostic, color);
+    appendDiagnostic(lines, diagnostic, color, redact);
   }
 
   const hidden = diagnostics.length - shown;
@@ -60,7 +77,44 @@ function resolveLimit(maxItems: number | undefined, total: number): number {
   return Math.max(0, Math.min(total, Math.floor(maxItems)));
 }
 
-function appendDiagnostic(lines: string[], diagnostic: EdfDiagnostic, color: boolean): void {
+const REDACTED = '[redacted]';
+
+/**
+ * Removes a field's content from every place `appendDiagnostic` would print it.
+ *
+ * The message is prose with the value interpolated into it, so the value is substituted out by
+ * text rather than by re-rendering the message: the raw string is known exactly, and both its
+ * padded and trimmed spellings are removed. `rawBytes` is dropped outright — it is the field's
+ * literal bytes, and a hex dump with an ASCII column is not a redaction of anything.
+ *
+ * Substitution is done on the value, never on the code or the rule, so what is left still
+ * identifies the problem: `[PATIENT_ID_NONCONFORMANT] ... at byte offset 8` remains readable.
+ */
+function redactDiagnostic(diagnostic: EdfDiagnostic): EdfDiagnostic {
+  const raw = diagnostic.raw;
+  let message = diagnostic.message;
+  if (raw !== undefined) {
+    for (const spelling of [JSON.stringify(raw), JSON.stringify(raw.trim()), raw, raw.trim()]) {
+      if (spelling.length > 0) message = message.split(spelling).join(REDACTED);
+    }
+  }
+  return {
+    ...diagnostic,
+    message,
+    raw: raw === undefined ? undefined : REDACTED,
+    rawBytes: undefined,
+    actual: diagnostic.actual === undefined ? undefined : REDACTED,
+  };
+}
+
+function appendDiagnostic(
+  lines: string[],
+  input: EdfDiagnostic,
+  color: boolean,
+  redactFields: ReadonlySet<string>,
+): void {
+  const diagnostic =
+    input.field !== undefined && redactFields.has(input.field) ? redactDiagnostic(input) : input;
   const marker = paint(
     `${diagnostic.severity} [${diagnostic.code}]`,
     SEVERITY_COLORS[diagnostic.severity],

package/src/format-report.ts

@@ -87,7 +87,12 @@ export function formatValidationReport(
   if (report.diagnostics.length > 0) {
     const maxItems = options?.maxItems ?? DEFAULT_MAX_ITEMS;
     lines.push('');
-    lines.push(formatDiagnostics(report.diagnostics, { maxItems }));
+    lines.push(
+      formatDiagnostics(report.diagnostics, {
+        maxItems,
+        ...(options?.redactFields === undefined ? {} : { redactFields: options.redactFields }),
+      }),
+    );
   }
 
   return lines.join('\n');

package/src/recording.ts

@@ -259,5 +259,12 @@ export async function readAnnotations(
   options?: DecodeAnnotationsOptions & ReadOptions,
 ): Promise<EdfAnnotationsResult> {
   const bytes = await readRecordBytes(recording.source, recording.header, records, options);
-  return decodeAnnotations(recording.header, bytes, records, options);
+  // The timeline knows record 0's sub-second start offset; a range that does not contain record 0
+  // cannot derive it, and on an EDF+D file the derivation gives a value outside [0, 1) and the
+  // rebasing switches off. Passing it makes the same annotation read the same way from a partial
+  // decode as from a whole-file one — which is the point of `readAnnotations(edf, chunk.records)`.
+  return decodeAnnotations(recording.header, bytes, records, {
+    startOffsetTicks: recording.timeline.startOffsetTicks,
+    ...options,
+  });
 }

package/src/tal/annotations.ts

@@ -456,6 +456,7 @@ export function decodeAnnotations(
     recordOnsetTicks,
     baseTicks,
     firstObserved,
+    options,
   );
 
   pending.sort(compareAnnotations);
@@ -512,6 +513,7 @@ function resolveStartOffsetTicks(
   recordOnsetTicks: BigInt64Array,
   baseTicks: bigint,
   firstObserved: ObservedOnset | undefined,
+  options: DecodeAnnotationsOptions | undefined,
 ): bigint {
   if (records.count === 0) return 0n;
 
@@ -523,6 +525,12 @@ function resolveStartOffsetTicks(
         : `derived from record ${firstObserved.recordIndex}, timekeeping onset ` +
           `"${firstObserved.raw}"`;
 
+  // A caller who knows the file's own offset outranks any derivation: the offset is a property of
+  // the recording, and deriving it from an observed onset only works while the records in between
+  // are contiguous. `readAnnotations` always knows it, from the timeline.
+  const supplied = options?.startOffsetTicks;
+  if (supplied !== undefined) return supplied;
+
   if (records.start === 0) {
     const onset = recordOnsetTicks[0] ?? 0n;
     if (onset < 0n || onset >= TICKS_PER_SECOND) {

package/src/types.ts

@@ -425,6 +425,12 @@ export interface FormatReportOptions {
   readonly header?: EdfHeader;
   /** Individual diagnostics to print. Defaults to 20 — the counts above them are the summary. */
   readonly maxItems?: number;
+  /**
+   * Forwarded to `formatDiagnostics`. Pass `['patientId', 'recordingId']` for a report that will
+   * be pasted somewhere: a non-conformant identification field is reported with its content, and
+   * that content is a person's name.
+   */
+  readonly redactFields?: readonly string[];
 }
 
 export interface FormatHeaderOptions {
@@ -581,6 +587,21 @@ export interface WindowSelection {
 export interface DecodeAnnotationsOptions extends ParseOptions {
   /** Defaults to every annotation signal. Only the first carries timekeeping. */
   readonly signalIndices?: readonly number[];
+  /**
+   * Record 0's sub-second start offset, in ticks — the origin `onsetTicksFromFirstRecord` and
+   * `onsetSecondsFromFirstRecord` are measured from.
+   *
+   * This is a property of the FILE, not of the range being decoded, but a range that does not
+   * contain record 0 cannot see it: the derivation from an observed onset only works when the
+   * records in between are contiguous, so on an EDF+D file it produces a value outside [0, 1) and
+   * the rebasing switches off. The same annotation then reads one way from a whole-file decode and
+   * another from a partial one, differing by the offset — while `readWindow` reports the record's
+   * true start either way.
+   *
+   * `readAnnotations` passes `timeline.startOffsetTicks` for you. Pass it yourself when calling
+   * `decodeAnnotations` directly on a range that does not start at record 0.
+   */
+  readonly startOffsetTicks?: bigint;
   /**
    * The recording's own time origin, for deriving the onset of a record whose timekeeping TAL
    * is missing.