edfcore 0.1.7 → 0.1.9

package/dist/biosemi.d.ts

@@ -0,0 +1,45 @@
+/**
+ * The BioSemi Status channel.
+ *
+ * Layer 7. BioSemi's ActiveTwo writes BDF files whose last channel is labelled `Status`, and its
+ * 24-bit samples are not a measurement — they are a bit field the amplifier latched at each
+ * sample. The low 16 bits are the parallel trigger input, which is how nearly every ERP
+ * experiment records stimulus onsets.
+ *
+ * Reading that is file access, not analysis. The codes were written by the hardware at
+ * acquisition time, exactly like an EDF+ annotation, and this module only reports what is in the
+ * bytes. Nothing here inspects a biosignal, so event detection remains a non-goal.
+ *
+ * Only the bits BioSemi documents are named. `raw` carries all 24 so a caller with a rig-specific
+ * convention can decode the rest without waiting for this module to learn about it — inventing
+ * meanings for the bits above 18 would be guessing, and a wrong trigger code is worse than none.
+ */
+import type { EdfHeader, EdfRecording, EdfSignal, EdfStatusWord, EdfTriggerEvent, ReadOptions, TriggerSelection } from './types.js';
+/**
+ * The `Status` channel of a BDF file, or `undefined` when there is none.
+ *
+ * Returns `undefined` rather than throwing for a plain EDF or a BDF without the channel: a file
+ * having no Status channel is an ordinary fact about the file, not an error.
+ */
+export declare function getStatusSignal(header: EdfHeader): EdfSignal | undefined;
+/**
+ * Decodes one 24-bit Status sample.
+ *
+ * `decodeDigital` sign-extends BDF samples, as it must for a measurement, so bit 23 of a Status
+ * word arrives as a negative number. The bit field is unsigned, so it is masked back before
+ * anything is read out of it.
+ */
+export declare function decodeStatusWord(sample: number): EdfStatusWord;
+/**
+ * Every change of the trigger word in a window, as timed events.
+ *
+ * A parallel trigger is held for as long as the stimulus computer asserts it, so the same code
+ * repeats over many samples. What an experimenter wants is the TRANSITION, which is why this
+ * reports changes rather than samples: one event per change, carrying the code it changed to.
+ *
+ * Code 0 is "no trigger asserted", so a return to 0 is reported as an event with `trigger: 0`
+ * and is easy to filter out. It is reported rather than dropped because the release time is what
+ * gives a trigger its duration.
+ */
+export declare function readTriggers(recording: EdfRecording, selection: TriggerSelection, options?: ReadOptions): Promise<readonly EdfTriggerEvent[]>;
+//# sourceMappingURL=biosemi.d.ts.map

package/dist/biosemi.d.ts.map

@@ -0,0 +1 @@
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package/dist/biosemi.js

@@ -0,0 +1,122 @@
+/**
+ * The BioSemi Status channel.
+ *
+ * Layer 7. BioSemi's ActiveTwo writes BDF files whose last channel is labelled `Status`, and its
+ * 24-bit samples are not a measurement — they are a bit field the amplifier latched at each
+ * sample. The low 16 bits are the parallel trigger input, which is how nearly every ERP
+ * experiment records stimulus onsets.
+ *
+ * Reading that is file access, not analysis. The codes were written by the hardware at
+ * acquisition time, exactly like an EDF+ annotation, and this module only reports what is in the
+ * bytes. Nothing here inspects a biosignal, so event detection remains a non-goal.
+ *
+ * Only the bits BioSemi documents are named. `raw` carries all 24 so a caller with a rig-specific
+ * convention can decode the rest without waiting for this module to learn about it — inventing
+ * meanings for the bits above 18 would be guessing, and a wrong trigger code is worse than none.
+ */
+import { decodeDigitalCounted } from './decode/digital.js';
+import { readRecordBytes } from './io/read.js';
+import { scanChunkRecords } from './record-index.js';
+import { ticksToSeconds } from './tal/ticks.js';
+import { resolveTimeWindow } from './time/window.js';
+/** BioSemi's own label for the channel. Matched case-insensitively after trimming. */
+const STATUS_LABEL = 'status';
+/** The parallel input occupies the low 16 bits; the flags sit immediately above it. */
+const TRIGGER_MASK = 0xffff;
+const EPOCH_BIT = 1 << 16;
+const CMS_IN_RANGE_BIT = 1 << 17;
+const BATTERY_LOW_BIT = 1 << 18;
+/**
+ * The `Status` channel of a BDF file, or `undefined` when there is none.
+ *
+ * Returns `undefined` rather than throwing for a plain EDF or a BDF without the channel: a file
+ * having no Status channel is an ordinary fact about the file, not an error.
+ */
+export function getStatusSignal(header) {
+    if (header.bytesPerSample !== 3)
+        return undefined;
+    for (const index of header.dataSignalIndices) {
+        const signal = header.signals[index];
+        if (signal !== undefined && signal.label.trim().toLowerCase() === STATUS_LABEL)
+            return signal;
+    }
+    return undefined;
+}
+/**
+ * Decodes one 24-bit Status sample.
+ *
+ * `decodeDigital` sign-extends BDF samples, as it must for a measurement, so bit 23 of a Status
+ * word arrives as a negative number. The bit field is unsigned, so it is masked back before
+ * anything is read out of it.
+ */
+export function decodeStatusWord(sample) {
+    const raw = sample & 0xffffff;
+    return {
+        raw,
+        trigger: raw & TRIGGER_MASK,
+        newEpoch: (raw & EPOCH_BIT) !== 0,
+        cmsInRange: (raw & CMS_IN_RANGE_BIT) !== 0,
+        batteryLow: (raw & BATTERY_LOW_BIT) !== 0,
+    };
+}
+/**
+ * Every change of the trigger word in a window, as timed events.
+ *
+ * A parallel trigger is held for as long as the stimulus computer asserts it, so the same code
+ * repeats over many samples. What an experimenter wants is the TRANSITION, which is why this
+ * reports changes rather than samples: one event per change, carrying the code it changed to.
+ *
+ * Code 0 is "no trigger asserted", so a return to 0 is reported as an event with `trigger: 0`
+ * and is easy to filter out. It is reported rather than dropped because the release time is what
+ * gives a trigger its duration.
+ */
+export async function readTriggers(recording, selection, options) {
+    const { source, header, timeline } = recording;
+    const status = getStatusSignal(header);
+    if (status === undefined) {
+        throw new RangeError('readTriggers(): this file has no BioSemi Status channel — it is either not a BDF file, ' +
+            'or no signal is labelled "Status". Next: check header.signals, or read EDF+ ' +
+            'annotations with readAnnotations().');
+    }
+    const ranges = resolveTimeWindow(timeline, recording.index, selection.startSeconds, selection.durationSeconds);
+    const events = [];
+    // Carried across runs so a trigger held over a gap is not reported twice. `undefined` means
+    // nothing has been seen yet, which is what makes the very first sample an event.
+    let previous;
+    for (const records of ranges) {
+        const chunkRecords = scanChunkRecords(header, options?.maxMaterializeBytes);
+        let scanned = 0;
+        let scratch;
+        while (scanned < records.count) {
+            const slice = {
+                start: records.start + scanned,
+                count: Math.min(chunkRecords, records.count - scanned),
+            };
+            const bytes = await readRecordBytes(source, header, slice, options);
+            const decoded = decodeDigitalCounted(header, bytes, slice, status.index, scratch, options);
+            scratch = decoded.digital;
+            const sampleCount = status.samplesPerRecord * slice.count;
+            const firstSampleIndex = slice.start * status.samplesPerRecord;
+            for (let i = 0; i < sampleCount; i += 1) {
+                const word = decodeStatusWord(decoded.digital[i]);
+                if (previous !== undefined && word.trigger === previous)
+                    continue;
+                previous = word.trigger;
+                const sampleIndex = firstSampleIndex + i;
+                const ticks = header.recordDurationTicks > 0n && status.samplesPerRecord > 0
+                    ? (BigInt(sampleIndex) * header.recordDurationTicks) / BigInt(status.samplesPerRecord)
+                    : 0n;
+                events.push({
+                    sampleIndex,
+                    seconds: ticksToSeconds(ticks),
+                    ticks,
+                    trigger: word.trigger,
+                    status: word,
+                });
+            }
+            scanned += slice.count;
+        }
+    }
+    return Object.freeze(events);
+}
+//# sourceMappingURL=biosemi.js.map

package/dist/biosemi.js.map

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package/dist/constants.d.ts

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.1.7";
+export declare const VERSION = "0.1.9";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.1.7';
+export const VERSION = '0.1.9';
 //# sourceMappingURL=constants.js.map

package/dist/index.d.ts

@@ -22,7 +22,7 @@
 /** The trailing `options` argument shared by every primitive that can allocate. */
 export type { MaterializeOptions } from './decode/digital.js';
 export type { FormatDiagnosticsOptions } from './diagnostics/format.js';
-export type { AbortSignalLike, BlobLike, BuildIndexOptions, ByteSource, CacheOptions, DecodeAnnotationsOptions, EdfAnnotation, EdfAnnotationsResult, EdfCalendarDate, EdfChunk, EdfChunkSignal, EdfClockTime, EdfDiagnostic, EdfDiagnosticCode, EdfEnvelopeChunk, EdfEnvelopeSignal, EdfGap, EdfHeader, EdfInspection, EdfKnownDiagnosticCode, EdfLocation, EdfPatientId, EdfPhysicalEnvelope, EdfRawHeaderFields, EdfRawSignalFields, EdfRecordIndex, EdfRecording, EdfRecordingId, EdfScale, EdfSegment, EdfSeverity, EdfSignal, EdfStartTime, EdfTimeline, EdfVariant, EnvelopeSelection, FetchLike, HttpResponseLike, HttpSourceOptions, OpenOptions, ParseOptions, ReadOptions, RecordRange, RecordSelection, WindowSelection, } from './types.js';
+export type { AbortSignalLike, BlobLike, BuildIndexOptions, ByteSource, CacheOptions, DecodeAnnotationsOptions, EdfAnnotation, EdfAnnotationsResult, EdfCalendarDate, EdfChunk, EdfChunkSignal, EdfClockTime, EdfDiagnostic, EdfDiagnosticCode, EdfEnvelopeChunk, EdfEnvelopeSignal, EdfGap, EdfHeader, EdfInspection, EdfKnownDiagnosticCode, EdfLocation, EdfPatientId, EdfPhysicalEnvelope, EdfRawHeaderFields, EdfRawSignalFields, EdfRecordIndex, EdfRecording, EdfRecordingId, EdfScale, EdfSegment, EdfSeverity, EdfSignal, EdfStartTime, EdfStatusWord, EdfTimeline, EdfTriggerEvent, EdfVariant, EnvelopeSelection, FetchLike, HttpResponseLike, HttpSourceOptions, OpenOptions, ParseOptions, ReadOptions, RecordRange, RecordSelection, StreamSelection, TriggerSelection, WindowSelection, } from './types.js';
 export type { AnyEdfError, EdfErrorKind, EdfFormatErrorInit } from './errors.js';
 export { EdfAmbiguousChannelError, EdfBudgetError, EdfChannelNotFoundError, EdfError, EdfFormatError, EdfRangeError, EdfScalingError, EdfSourceError, isEdfError, } from './errors.js';
 export { BDF_ANNOTATIONS_LABEL, BDF_DIGITAL_MAX, BDF_DIGITAL_MIN, EDF_ANNOTATIONS_LABEL, EDF_DIGITAL_MAX, EDF_DIGITAL_MIN, EDF_HEADER_BLOCK_BYTES, EDF_RECOMMENDED_MAX_RECORD_BYTES, TICKS_PER_SECOND, VERSION, } from './constants.js';
@@ -41,7 +41,9 @@ export { cachedSource } from './io/cached.js';
 export { httpSource } from './io/http.js';
 export { readHeader, readRecordBytes } from './io/read.js';
 export { buildRecordIndex, buildTimeline } from './record-index.js';
+export { decodeStatusWord, getStatusSignal, readTriggers } from './biosemi.js';
 export { envelopeOfSamples, readEnvelope, toPhysicalEnvelope } from './envelope.js';
 export { inspectEdf } from './inspect.js';
 export { openEdf, readAnnotations, readRecords, readWindow } from './recording.js';
+export { streamRecords } from './stream.js';
 //# sourceMappingURL=index.d.ts.map

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@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;AAOH,mFAAmF;AACnF,YAAY,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAC9D,YAAY,EAAE,wBAAwB,EAAE,MAAM,yBAAyB,CAAC;AACxE,YAAY,EACV,eAAe,EACf,QAAQ,EACR,iBAAiB,EACjB,UAAU,EACV,YAAY,EACZ,wBAAwB,EACxB,aAAa,EACb,oBAAoB,EACpB,eAAe,EACf,QAAQ,EACR,cAAc,EACd,YAAY,EACZ,aAAa,EACb,iBAAiB,EACjB,gBAAgB,EAChB,iBAAiB,EACjB,MAAM,EACN,SAAS,EACT,aAAa,EACb,sBAAsB,EACtB,WAAW,EACX,YAAY,EACZ,mBAAmB,EACnB,kBAAkB,EAClB,kBAAkB,EAClB,cAAc,EACd,YAAY,EACZ,cAAc,EACd,QAAQ,EACR,UAAU,EACV,WAAW,EACX,SAAS,EACT,YAAY,EACZ,aAAa,EACb,WAAW,EACX,eAAe,EACf,UAAU,EACV,iBAAiB,EACjB,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,WAAW,EACX,YAAY,EACZ,WAAW,EACX,WAAW,EACX,eAAe,EACf,eAAe,EACf,gBAAgB,EAChB,eAAe,GAChB,MAAM,YAAY,CAAC;AAUpB,YAAY,EAAE,WAAW,EAAE,YAAY,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAC;AACjF,OAAO,EACL,wBAAwB,EACxB,cAAc,EACd,uBAAuB,EACvB,QAAQ,EACR,cAAc,EACd,aAAa,EACb,eAAe,EACf,cAAc,EACd,UAAU,GACX,MAAM,aAAa,CAAC;AAMrB,OAAO,EACL,qBAAqB,EACrB,eAAe,EACf,eAAe,EACf,qBAAqB,EACrB,eAAe,EACf,eAAe,EACf,sBAAsB,EACtB,gCAAgC,EAChC,gBAAgB,EAChB,OAAO,GACR,MAAM,gBAAgB,CAAC;AAOxB,OAAO,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AACvD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,mBAAmB,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AACvE,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mBAAmB,CAAC;AACzD,OAAO,EAAE,WAAW,EAAE,SAAS,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AAC/E,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAC;AACzD,OAAO,EAAE,iBAAiB,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAQnE,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAC3C,OAAO,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAC9C,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAM1C,OAAO,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAE,gBAAgB,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAMpE,OAAO,EAAE,gBAAgB,EAAE,eAAe,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAC/E,OAAO,EAAE,iBAAiB,EAAE,YAAY,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AACpF,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAC1C,OAAO,EAAE,OAAO,EAAE,eAAe,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AACnF,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC"}

package/dist/index.js

@@ -54,7 +54,9 @@ export { buildRecordIndex, buildTimeline } from './record-index.js';
 // ===========================================================================
 // Convenience layer
 // ===========================================================================
+export { decodeStatusWord, getStatusSignal, readTriggers } from './biosemi.js';
 export { envelopeOfSamples, readEnvelope, toPhysicalEnvelope } from './envelope.js';
 export { inspectEdf } from './inspect.js';
 export { openEdf, readAnnotations, readRecords, readWindow } from './recording.js';
+export { streamRecords } from './stream.js';
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;AAuEH,OAAO,EACL,wBAAwB,EACxB,cAAc,EACd,uBAAuB,EACvB,QAAQ,EACR,cAAc,EACd,aAAa,EACb,eAAe,EACf,cAAc,EACd,UAAU,GACX,MAAM,aAAa,CAAC;AAErB,8EAA8E;AAC9E,YAAY;AACZ,8EAA8E;AAE9E,OAAO,EACL,qBAAqB,EACrB,eAAe,EACf,eAAe,EACf,qBAAqB,EACrB,eAAe,EACf,eAAe,EACf,sBAAsB,EACtB,gCAAgC,EAChC,gBAAgB,EAChB,OAAO,GACR,MAAM,gBAAgB,CAAC;AAExB,8EAA8E;AAC9E,2EAA2E;AAC3E,2CAA2C;AAC3C,8EAA8E;AAE9E,OAAO,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AACvD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,mBAAmB,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AACvE,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mBAAmB,CAAC;AACzD,OAAO,EAAE,WAAW,EAAE,SAAS,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AAC/E,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAC;AACzD,OAAO,EAAE,iBAAiB,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAEnE,8EAA8E;AAC9E,yEAAyE;AACzE,2EAA2E;AAC3E,6CAA6C;AAC7C,8EAA8E;AAE9E,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAC3C,OAAO,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAC9C,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAE1C,8EAA8E;AAC9E,uCAAuC;AACvC,8EAA8E;AAE9E,OAAO,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAE,gBAAgB,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAEpE,8EAA8E;AAC9E,oBAAoB;AACpB,8EAA8E;AAE9E,OAAO,EAAE,gBAAgB,EAAE,eAAe,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAC/E,OAAO,EAAE,iBAAiB,EAAE,YAAY,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AACpF,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAC1C,OAAO,EAAE,OAAO,EAAE,eAAe,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AACnF,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC"}

package/dist/stream.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Streaming iteration over a window.
+ *
+ * Layer 7. `readWindow` returns every chunk at once, which is right for a window you are about to
+ * draw and wrong for a whole recording: the array holds every sample the window covers, so a
+ * twelve-hour pass costs twelve hours of memory.
+ *
+ * A pipeline wants the opposite — one bounded piece at a time, with the previous one collectable.
+ * That is spelled `for await`, and doing it by hand means reimplementing the record arithmetic and
+ * the gap handling that `readWindow` already owns.
+ *
+ * Chunks arrive in time order, never span a gap, and carry the same `precededByGap` a
+ * `readWindow` chunk would, so a consumer sees the discontinuities rather than a smooth lie.
+ */
+import type { EdfChunk, EdfRecording, ReadOptions, StreamSelection } from './types.js';
+/**
+ * Yields a window one bounded chunk at a time.
+ *
+ * `chunkRecords` is the unit of I/O and of memory: each yielded chunk holds that many records of
+ * the requested signals and no more. It is a count of records rather than of bytes or seconds
+ * because the record is the only unit every signal in an EDF file shares — signals may sample at
+ * different rates, so "a second of data" is a different number of samples per channel.
+ */
+export declare function streamRecords(recording: EdfRecording, selection: StreamSelection, options?: ReadOptions): AsyncGenerator<EdfChunk, void, undefined>;
+//# sourceMappingURL=stream.d.ts.map

package/dist/stream.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"stream.d.ts","sourceRoot":"","sources":["../src/stream.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAIH,OAAO,KAAK,EAAE,QAAQ,EAAE,YAAY,EAAE,WAAW,EAAe,eAAe,EAAE,MAAM,YAAY,CAAC;AAKpG;;;;;;;GAOG;AACH,wBAAuB,aAAa,CAClC,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,eAAe,EAC1B,OAAO,CAAC,EAAE,WAAW,GACpB,cAAc,CAAC,QAAQ,EAAE,IAAI,EAAE,SAAS,CAAC,CAiC3C"}

package/dist/stream.js

@@ -0,0 +1,48 @@
+/**
+ * Streaming iteration over a window.
+ *
+ * Layer 7. `readWindow` returns every chunk at once, which is right for a window you are about to
+ * draw and wrong for a whole recording: the array holds every sample the window covers, so a
+ * twelve-hour pass costs twelve hours of memory.
+ *
+ * A pipeline wants the opposite — one bounded piece at a time, with the previous one collectable.
+ * That is spelled `for await`, and doing it by hand means reimplementing the record arithmetic and
+ * the gap handling that `readWindow` already owns.
+ *
+ * Chunks arrive in time order, never span a gap, and carry the same `precededByGap` a
+ * `readWindow` chunk would, so a consumer sees the discontinuities rather than a smooth lie.
+ */
+import { readRecords } from './recording.js';
+import { resolveTimeWindow } from './time/window.js';
+/** How many records to read at a time when the caller does not say. */
+const DEFAULT_STREAM_RECORDS = 256;
+/**
+ * Yields a window one bounded chunk at a time.
+ *
+ * `chunkRecords` is the unit of I/O and of memory: each yielded chunk holds that many records of
+ * the requested signals and no more. It is a count of records rather than of bytes or seconds
+ * because the record is the only unit every signal in an EDF file shares — signals may sample at
+ * different rates, so "a second of data" is a different number of samples per channel.
+ */
+export async function* streamRecords(recording, selection, options) {
+    const chunkRecords = selection.chunkRecords ?? DEFAULT_STREAM_RECORDS;
+    if (!Number.isSafeInteger(chunkRecords) || chunkRecords < 1) {
+        throw new RangeError(`streamRecords(): chunkRecords must be a positive whole number, received ${chunkRecords}. ` +
+            'Next: omit it for the default, or pass how many records you want to hold at once.');
+    }
+    const ranges = resolveTimeWindow(recording.timeline, recording.index, selection.startSeconds, selection.durationSeconds);
+    for (const run of ranges) {
+        let scanned = 0;
+        while (scanned < run.count) {
+            const records = {
+                start: run.start + scanned,
+                count: Math.min(chunkRecords, run.count - scanned),
+            };
+            // readRecords, not a private path: the chunk a consumer gets from streaming and the chunk
+            // it gets from reading must be the same object in every respect, including its diagnostics.
+            yield await readRecords(recording, { signalIndices: selection.signalIndices, records }, options);
+            scanned += records.count;
+        }
+    }
+}
+//# sourceMappingURL=stream.js.map

package/dist/stream.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"stream.js","sourceRoot":"","sources":["../src/stream.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAC7C,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AAGrD,uEAAuE;AACvE,MAAM,sBAAsB,GAAG,GAAG,CAAC;AAEnC;;;;;;;GAOG;AACH,MAAM,CAAC,KAAK,SAAS,CAAC,CAAC,aAAa,CAClC,SAAuB,EACvB,SAA0B,EAC1B,OAAqB;IAErB,MAAM,YAAY,GAAG,SAAS,CAAC,YAAY,IAAI,sBAAsB,CAAC;IACtE,IAAI,CAAC,MAAM,CAAC,aAAa,CAAC,YAAY,CAAC,IAAI,YAAY,GAAG,CAAC,EAAE,CAAC;QAC5D,MAAM,IAAI,UAAU,CAClB,2EAA2E,YAAY,IAAI;YACzF,mFAAmF,CACtF,CAAC;IACJ,CAAC;IAED,MAAM,MAAM,GAAG,iBAAiB,CAC9B,SAAS,CAAC,QAAQ,EAClB,SAAS,CAAC,KAAK,EACf,SAAS,CAAC,YAAY,EACtB,SAAS,CAAC,eAAe,CAC1B,CAAC;IAEF,KAAK,MAAM,GAAG,IAAI,MAAM,EAAE,CAAC;QACzB,IAAI,OAAO,GAAG,CAAC,CAAC;QAChB,OAAO,OAAO,GAAG,GAAG,CAAC,KAAK,EAAE,CAAC;YAC3B,MAAM,OAAO,GAAgB;gBAC3B,KAAK,EAAE,GAAG,CAAC,KAAK,GAAG,OAAO;gBAC1B,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,YAAY,EAAE,GAAG,CAAC,KAAK,GAAG,OAAO,CAAC;aACnD,CAAC;YACF,0FAA0F;YAC1F,4FAA4F;YAC5F,MAAM,MAAM,WAAW,CACrB,SAAS,EACT,EAAE,aAAa,EAAE,SAAS,CAAC,aAAa,EAAE,OAAO,EAAE,EACnD,OAAO,CACR,CAAC;YACF,OAAO,IAAI,OAAO,CAAC,KAAK,CAAC;QAC3B,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/types.d.ts

@@ -356,6 +356,33 @@ export interface EdfPhysicalEnvelope {
     readonly min: Float64Array;
     readonly max: Float64Array;
 }
+export interface StreamSelection extends WindowSelection {
+    /** Records held at once. Defaults to 256. The record is the only unit every signal shares. */
+    readonly chunkRecords?: number;
+}
+/** One decoded BioSemi Status sample. Only the bits BioSemi documents are named. */
+export interface EdfStatusWord {
+    /** All 24 bits, unsigned. Decode rig-specific conventions from this. */
+    readonly raw: number;
+    /** The parallel trigger input: the low 16 bits. */
+    readonly trigger: number;
+    readonly newEpoch: boolean;
+    readonly cmsInRange: boolean;
+    readonly batteryLow: boolean;
+}
+/** A change of the trigger word, timed on the Status channel's own sample grid. */
+export interface EdfTriggerEvent {
+    readonly sampleIndex: number;
+    readonly seconds: number;
+    /** Exact, in 100 ns units. Compare with this, never with the float. */
+    readonly ticks: bigint;
+    readonly trigger: number;
+    readonly status: EdfStatusWord;
+}
+export interface TriggerSelection {
+    readonly startSeconds: number;
+    readonly durationSeconds: number;
+}
 export interface EdfAnnotation {
     /** Verbatim on-disk value, relative to the header startdate/starttime (EDF+ 2.2.4). */
     readonly onsetSecondsFromHeaderStart: number;

package/dist/types.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.1.7",
+  "version": "0.1.9",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/biosemi.ts

@@ -0,0 +1,156 @@
+/**
+ * The BioSemi Status channel.
+ *
+ * Layer 7. BioSemi's ActiveTwo writes BDF files whose last channel is labelled `Status`, and its
+ * 24-bit samples are not a measurement — they are a bit field the amplifier latched at each
+ * sample. The low 16 bits are the parallel trigger input, which is how nearly every ERP
+ * experiment records stimulus onsets.
+ *
+ * Reading that is file access, not analysis. The codes were written by the hardware at
+ * acquisition time, exactly like an EDF+ annotation, and this module only reports what is in the
+ * bytes. Nothing here inspects a biosignal, so event detection remains a non-goal.
+ *
+ * Only the bits BioSemi documents are named. `raw` carries all 24 so a caller with a rig-specific
+ * convention can decode the rest without waiting for this module to learn about it — inventing
+ * meanings for the bits above 18 would be guessing, and a wrong trigger code is worse than none.
+ */
+
+import { decodeDigitalCounted } from './decode/digital.js';
+import { readRecordBytes } from './io/read.js';
+import { scanChunkRecords } from './record-index.js';
+import { ticksToSeconds } from './tal/ticks.js';
+import { resolveTimeWindow } from './time/window.js';
+import type {
+  EdfHeader,
+  EdfRecording,
+  EdfSignal,
+  EdfStatusWord,
+  EdfTriggerEvent,
+  ReadOptions,
+  RecordRange,
+  TriggerSelection,
+} from './types.js';
+
+/** BioSemi's own label for the channel. Matched case-insensitively after trimming. */
+const STATUS_LABEL = 'status';
+
+/** The parallel input occupies the low 16 bits; the flags sit immediately above it. */
+const TRIGGER_MASK = 0xffff;
+const EPOCH_BIT = 1 << 16;
+const CMS_IN_RANGE_BIT = 1 << 17;
+const BATTERY_LOW_BIT = 1 << 18;
+
+/**
+ * The `Status` channel of a BDF file, or `undefined` when there is none.
+ *
+ * Returns `undefined` rather than throwing for a plain EDF or a BDF without the channel: a file
+ * having no Status channel is an ordinary fact about the file, not an error.
+ */
+export function getStatusSignal(header: EdfHeader): EdfSignal | undefined {
+  if (header.bytesPerSample !== 3) return undefined;
+  for (const index of header.dataSignalIndices) {
+    const signal = header.signals[index];
+    if (signal !== undefined && signal.label.trim().toLowerCase() === STATUS_LABEL) return signal;
+  }
+  return undefined;
+}
+
+/**
+ * Decodes one 24-bit Status sample.
+ *
+ * `decodeDigital` sign-extends BDF samples, as it must for a measurement, so bit 23 of a Status
+ * word arrives as a negative number. The bit field is unsigned, so it is masked back before
+ * anything is read out of it.
+ */
+export function decodeStatusWord(sample: number): EdfStatusWord {
+  const raw = sample & 0xffffff;
+  return {
+    raw,
+    trigger: raw & TRIGGER_MASK,
+    newEpoch: (raw & EPOCH_BIT) !== 0,
+    cmsInRange: (raw & CMS_IN_RANGE_BIT) !== 0,
+    batteryLow: (raw & BATTERY_LOW_BIT) !== 0,
+  };
+}
+
+/**
+ * Every change of the trigger word in a window, as timed events.
+ *
+ * A parallel trigger is held for as long as the stimulus computer asserts it, so the same code
+ * repeats over many samples. What an experimenter wants is the TRANSITION, which is why this
+ * reports changes rather than samples: one event per change, carrying the code it changed to.
+ *
+ * Code 0 is "no trigger asserted", so a return to 0 is reported as an event with `trigger: 0`
+ * and is easy to filter out. It is reported rather than dropped because the release time is what
+ * gives a trigger its duration.
+ */
+export async function readTriggers(
+  recording: EdfRecording,
+  selection: TriggerSelection,
+  options?: ReadOptions,
+): Promise<readonly EdfTriggerEvent[]> {
+  const { source, header, timeline } = recording;
+
+  const status = getStatusSignal(header);
+  if (status === undefined) {
+    throw new RangeError(
+      'readTriggers(): this file has no BioSemi Status channel — it is either not a BDF file, ' +
+        'or no signal is labelled "Status". Next: check header.signals, or read EDF+ ' +
+        'annotations with readAnnotations().',
+    );
+  }
+
+  const ranges = resolveTimeWindow(
+    timeline,
+    recording.index,
+    selection.startSeconds,
+    selection.durationSeconds,
+  );
+
+  const events: EdfTriggerEvent[] = [];
+  // Carried across runs so a trigger held over a gap is not reported twice. `undefined` means
+  // nothing has been seen yet, which is what makes the very first sample an event.
+  let previous: number | undefined;
+
+  for (const records of ranges) {
+    const chunkRecords = scanChunkRecords(header, options?.maxMaterializeBytes);
+    let scanned = 0;
+    let scratch: Int32Array | undefined;
+
+    while (scanned < records.count) {
+      const slice: RecordRange = {
+        start: records.start + scanned,
+        count: Math.min(chunkRecords, records.count - scanned),
+      };
+      const bytes = await readRecordBytes(source, header, slice, options);
+      const decoded = decodeDigitalCounted(header, bytes, slice, status.index, scratch, options);
+      scratch = decoded.digital;
+
+      const sampleCount = status.samplesPerRecord * slice.count;
+      const firstSampleIndex = slice.start * status.samplesPerRecord;
+
+      for (let i = 0; i < sampleCount; i += 1) {
+        const word = decodeStatusWord(decoded.digital[i] as number);
+        if (previous !== undefined && word.trigger === previous) continue;
+        previous = word.trigger;
+
+        const sampleIndex = firstSampleIndex + i;
+        const ticks =
+          header.recordDurationTicks > 0n && status.samplesPerRecord > 0
+            ? (BigInt(sampleIndex) * header.recordDurationTicks) / BigInt(status.samplesPerRecord)
+            : 0n;
+        events.push({
+          sampleIndex,
+          seconds: ticksToSeconds(ticks),
+          ticks,
+          trigger: word.trigger,
+          status: word,
+        });
+      }
+
+      scanned += slice.count;
+    }
+  }
+
+  return Object.freeze(events);
+}

package/src/constants.ts

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.1.7';
+export const VERSION = '0.1.9';

package/src/index.ts

@@ -62,7 +62,9 @@ export type {
   EdfSeverity,
   EdfSignal,
   EdfStartTime,
+  EdfStatusWord,
   EdfTimeline,
+  EdfTriggerEvent,
   EdfVariant,
   EnvelopeSelection,
   FetchLike,
@@ -73,6 +75,8 @@ export type {
   ReadOptions,
   RecordRange,
   RecordSelection,
+  StreamSelection,
+  TriggerSelection,
   WindowSelection,
 } from './types.js';
 
@@ -151,6 +155,8 @@ export { buildRecordIndex, buildTimeline } from './record-index.js';
 // Convenience layer
 // ===========================================================================
 
+export { decodeStatusWord, getStatusSignal, readTriggers } from './biosemi.js';
 export { envelopeOfSamples, readEnvelope, toPhysicalEnvelope } from './envelope.js';
 export { inspectEdf } from './inspect.js';
 export { openEdf, readAnnotations, readRecords, readWindow } from './recording.js';
+export { streamRecords } from './stream.js';

package/src/stream.ts

@@ -0,0 +1,68 @@
+/**
+ * Streaming iteration over a window.
+ *
+ * Layer 7. `readWindow` returns every chunk at once, which is right for a window you are about to
+ * draw and wrong for a whole recording: the array holds every sample the window covers, so a
+ * twelve-hour pass costs twelve hours of memory.
+ *
+ * A pipeline wants the opposite — one bounded piece at a time, with the previous one collectable.
+ * That is spelled `for await`, and doing it by hand means reimplementing the record arithmetic and
+ * the gap handling that `readWindow` already owns.
+ *
+ * Chunks arrive in time order, never span a gap, and carry the same `precededByGap` a
+ * `readWindow` chunk would, so a consumer sees the discontinuities rather than a smooth lie.
+ */
+
+import { readRecords } from './recording.js';
+import { resolveTimeWindow } from './time/window.js';
+import type { EdfChunk, EdfRecording, ReadOptions, RecordRange, StreamSelection } from './types.js';
+
+/** How many records to read at a time when the caller does not say. */
+const DEFAULT_STREAM_RECORDS = 256;
+
+/**
+ * Yields a window one bounded chunk at a time.
+ *
+ * `chunkRecords` is the unit of I/O and of memory: each yielded chunk holds that many records of
+ * the requested signals and no more. It is a count of records rather than of bytes or seconds
+ * because the record is the only unit every signal in an EDF file shares — signals may sample at
+ * different rates, so "a second of data" is a different number of samples per channel.
+ */
+export async function* streamRecords(
+  recording: EdfRecording,
+  selection: StreamSelection,
+  options?: ReadOptions,
+): AsyncGenerator<EdfChunk, void, undefined> {
+  const chunkRecords = selection.chunkRecords ?? DEFAULT_STREAM_RECORDS;
+  if (!Number.isSafeInteger(chunkRecords) || chunkRecords < 1) {
+    throw new RangeError(
+      `streamRecords(): chunkRecords must be a positive whole number, received ${chunkRecords}. ` +
+        'Next: omit it for the default, or pass how many records you want to hold at once.',
+    );
+  }
+
+  const ranges = resolveTimeWindow(
+    recording.timeline,
+    recording.index,
+    selection.startSeconds,
+    selection.durationSeconds,
+  );
+
+  for (const run of ranges) {
+    let scanned = 0;
+    while (scanned < run.count) {
+      const records: RecordRange = {
+        start: run.start + scanned,
+        count: Math.min(chunkRecords, run.count - scanned),
+      };
+      // readRecords, not a private path: the chunk a consumer gets from streaming and the chunk
+      // it gets from reading must be the same object in every respect, including its diagnostics.
+      yield await readRecords(
+        recording,
+        { signalIndices: selection.signalIndices, records },
+        options,
+      );
+      scanned += records.count;
+    }
+  }
+}

package/src/types.ts

@@ -420,6 +420,37 @@ export interface EdfPhysicalEnvelope {
   readonly max: Float64Array;
 }
 
+export interface StreamSelection extends WindowSelection {
+  /** Records held at once. Defaults to 256. The record is the only unit every signal shares. */
+  readonly chunkRecords?: number;
+}
+
+/** One decoded BioSemi Status sample. Only the bits BioSemi documents are named. */
+export interface EdfStatusWord {
+  /** All 24 bits, unsigned. Decode rig-specific conventions from this. */
+  readonly raw: number;
+  /** The parallel trigger input: the low 16 bits. */
+  readonly trigger: number;
+  readonly newEpoch: boolean;
+  readonly cmsInRange: boolean;
+  readonly batteryLow: boolean;
+}
+
+/** A change of the trigger word, timed on the Status channel's own sample grid. */
+export interface EdfTriggerEvent {
+  readonly sampleIndex: number;
+  readonly seconds: number;
+  /** Exact, in 100 ns units. Compare with this, never with the float. */
+  readonly ticks: bigint;
+  readonly trigger: number;
+  readonly status: EdfStatusWord;
+}
+
+export interface TriggerSelection {
+  readonly startSeconds: number;
+  readonly durationSeconds: number;
+}
+
 export interface EdfAnnotation {
   /** Verbatim on-disk value, relative to the header startdate/starttime (EDF+ 2.2.4). */
   readonly onsetSecondsFromHeaderStart: number;