edfcore 0.1.18 → 0.2.0

package/CHANGELOG.md

@@ -6,6 +6,23 @@ alone does not tell you whether you were affected.
 edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
 defect; those are called out below.
 
+## 0.2.0
+
+Marks the feature set that accumulated across 0.1.7–0.1.19 — envelope decimation, the CLI,
+BioSemi Status helpers, streaming iteration, annotation queries, the sample grid and the
+formatters. Those went out as patch releases, which understated them: a backward-compatible
+feature is a minor under semver, and nineteen patch bumps read as nineteen bug fixes.
+
+- **Added** `matchSignals(header, pattern)` — a signal family by RegExp or predicate. Never
+  returns an annotations channel, which is the step people forget when filtering
+  `header.signals` by hand.
+
+## 0.1.19
+
+- **Added** an optional `out` parameter to `toPhysicalEnvelope`, matching `toPhysical`. An
+  envelope is the render-loop path, so two `Float64Array` allocations per frame is the one
+  allocation worth letting a caller avoid.
+
 ## 0.1.18
 
 - **Added** this changelog, and documentation for the CLI.

package/dist/constants.d.ts

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.1.18";
+export declare const VERSION = "0.2.0";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.d.ts.map

@@ -1 +1 @@
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package/dist/constants.js

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.1.18';
+export const VERSION = '0.2.0';
 //# sourceMappingURL=constants.js.map

package/dist/constants.js.map

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package/dist/envelope.d.ts

@@ -37,7 +37,7 @@ export declare function readEnvelope(recording: EdfRecording, selection: Envelop
  * digital value to the largest physical one. Mapping `min` to `min` would then produce an
  * envelope whose lower bound is above its upper bound, and a viewer would draw it inside out.
  */
-export declare function toPhysicalEnvelope(signal: EdfSignal, envelope: EdfEnvelopeSignal): EdfPhysicalEnvelope;
+export declare function toPhysicalEnvelope(signal: EdfSignal, envelope: EdfEnvelopeSignal, out?: EdfPhysicalEnvelope): EdfPhysicalEnvelope;
 /**
  * The envelope of an already-decoded chunk signal, without another read.
  *

package/dist/envelope.d.ts.map

@@ -1 +1 @@
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package/dist/envelope.js

@@ -204,16 +204,30 @@ function foldChunk(accumulator, header, bytes, slice, run, bucketCount, options)
  * digital value to the largest physical one. Mapping `min` to `min` would then produce an
  * envelope whose lower bound is above its upper bound, and a viewer would draw it inside out.
  */
-export function toPhysicalEnvelope(signal, envelope) {
+export function toPhysicalEnvelope(signal, envelope, out) {
     const scale = signal.scale;
     if (scale === undefined) {
         throw new EdfScalingError(`signal ${signal.index} (${JSON.stringify(signal.label)}) has no usable scale, so its ` +
             'envelope has no physical units. Next: check signal.scale before converting, or plot ' +
             'the digital envelope as it is.', { code: 'SCALE_UNAVAILABLE', signalIndex: signal.index, label: signal.label });
     }
+    /*
+     * `out` reuses the caller's arrays. An envelope is the render-loop path — a viewer redraws on
+     * every pan, zoom and resize — so allocating two Float64Arrays per frame is the one allocation
+     * here worth letting a caller avoid. `toPhysical` already takes an `out` for the same reason;
+     * this is the same contract, including refusing an array that is too short rather than
+     * silently writing fewer values than the caller will read.
+     */
     const length = envelope.min.length;
-    const low = new Float64Array(length);
-    const high = new Float64Array(length);
+    if (out !== undefined && (out.min.length < length || out.max.length < length)) {
+        throw new RangeError(`out holds ${Math.min(out.min.length, out.max.length)} buckets but this envelope has ` +
+            `${length}. Next: size both arrays to envelope.min.length, or omit out and let ` +
+            'toPhysicalEnvelope allocate.');
+    }
+    // A longer `out` is narrowed to a view over its own memory, so reuse allocates nothing while
+    // the result length stays equal to the real bucket count.
+    const low = out === undefined ? new Float64Array(length) : out.min.subarray(0, length);
+    const high = out === undefined ? new Float64Array(length) : out.max.subarray(0, length);
     const decreasing = scale.bitValue < 0;
     for (let i = 0; i < length; i += 1) {
         const a = scale.bitValue * (scale.offset + envelope.min[i]);

package/dist/envelope.js.map

@@ -1 +1 @@
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package/dist/header/lookup.d.ts

@@ -30,4 +30,17 @@ export declare function findSignals(header: EdfHeader, label: string): readonly
  * edfcore could return that would not be a guess.
  */
 export declare function getSignal(header: EdfHeader, selector: number | string): EdfSignal;
+/**
+ * Every data signal whose label matches a pattern.
+ *
+ * `findSignals` matches one exact label, which is right when you know what you want. This is for
+ * the other case: a montage is a family — `EEG Fpz-Cz`, `EEG Pz-Oz` — and picking it out by hand
+ * means filtering `header.signals` and remembering to drop the annotations channel, which is the
+ * step people forget. Its bytes are TAL text, so decoding them as samples produces numbers that
+ * look like a signal.
+ *
+ * Annotation channels are never returned. Pass a RegExp or a predicate; a plain string is the
+ * exact-match case `findSignals` already covers.
+ */
+export declare function matchSignals(header: EdfHeader, match: RegExp | ((label: string) => boolean)): readonly EdfSignal[];
 //# sourceMappingURL=lookup.d.ts.map

package/dist/header/lookup.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"lookup.d.ts","sourceRoot":"","sources":["../../src/header/lookup.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAKH,OAAO,KAAK,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAExD;;;;;;GAMG;AACH,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAGxD;AAED,8EAA8E;AAC9E,wBAAgB,WAAW,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,MAAM,GAAG,SAAS,SAAS,EAAE,CAGlF;AAMD;;;;;;;GAOG;AACH,wBAAgB,SAAS,CAAC,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAgCjF"}
+{"version":3,"file":"lookup.d.ts","sourceRoot":"","sources":["../../src/header/lookup.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAKH,OAAO,KAAK,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAExD;;;;;;GAMG;AACH,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAGxD;AAED,8EAA8E;AAC9E,wBAAgB,WAAW,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,MAAM,GAAG,SAAS,SAAS,EAAE,CAGlF;AAMD;;;;;;;GAOG;AACH,wBAAgB,SAAS,CAAC,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAgCjF;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,YAAY,CAC1B,MAAM,EAAE,SAAS,EACjB,KAAK,EAAE,MAAM,GAAG,CAAC,CAAC,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC,GAC3C,SAAS,SAAS,EAAE,CAKtB"}

package/dist/header/lookup.js

@@ -64,4 +64,20 @@ export function getSignal(header, selector) {
         'first is how the wrong channel ends up in a paper. Next: call findSignals() to get them ' +
         'all, or select by index.', { label: trimEdfField(selector), matchingIndices });
 }
+/**
+ * Every data signal whose label matches a pattern.
+ *
+ * `findSignals` matches one exact label, which is right when you know what you want. This is for
+ * the other case: a montage is a family — `EEG Fpz-Cz`, `EEG Pz-Oz` — and picking it out by hand
+ * means filtering `header.signals` and remembering to drop the annotations channel, which is the
+ * step people forget. Its bytes are TAL text, so decoding them as samples produces numbers that
+ * look like a signal.
+ *
+ * Annotation channels are never returned. Pass a RegExp or a predicate; a plain string is the
+ * exact-match case `findSignals` already covers.
+ */
+export function matchSignals(header, match) {
+    const test = match instanceof RegExp ? (label) => match.test(label) : match;
+    return Object.freeze(header.signals.filter((signal) => signal.kind === 'data' && test(signal.label)));
+}
 //# sourceMappingURL=lookup.js.map

package/dist/header/lookup.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -31,7 +31,7 @@ export { decodeDigital } from './decode/digital.js';
 export { clampToDigitalRange, toPhysical } from './decode/physical.js';
 export { formatDiagnostics } from './diagnostics/format.js';
 export { formatStartTimeNaive } from './header/dates.js';
-export { findSignals, getSignal, isAnnotationLabel } from './header/lookup.js';
+export { findSignals, getSignal, isAnnotationLabel, matchSignals } from './header/lookup.js';
 export { parseHeader } from './header/parse.js';
 export { decodeAnnotations } from './tal/annotations.js';
 export { resolveTimeWindow, trimToWindow } from './time/window.js';

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;AAOH,mFAAmF;AACnF,YAAY,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAC9D,YAAY,EAAE,wBAAwB,EAAE,MAAM,yBAAyB,CAAC;AACxE,YAAY,EACV,eAAe,EACf,QAAQ,EACR,iBAAiB,EACjB,UAAU,EACV,YAAY,EACZ,wBAAwB,EACxB,aAAa,EACb,oBAAoB,EACpB,mBAAmB,EACnB,eAAe,EACf,QAAQ,EACR,cAAc,EACd,YAAY,EACZ,aAAa,EACb,iBAAiB,EACjB,gBAAgB,EAChB,iBAAiB,EACjB,MAAM,EACN,SAAS,EACT,aAAa,EACb,sBAAsB,EACtB,WAAW,EACX,YAAY,EACZ,mBAAmB,EACnB,kBAAkB,EAClB,kBAAkB,EAClB,cAAc,EACd,YAAY,EACZ,cAAc,EACd,iBAAiB,EACjB,QAAQ,EACR,UAAU,EACV,WAAW,EACX,SAAS,EACT,YAAY,EACZ,aAAa,EACb,WAAW,EACX,eAAe,EACf,UAAU,EACV,iBAAiB,EACjB,SAAS,EACT,mBAAmB,EACnB,gBAAgB,EAChB,iBAAiB,EACjB,WAAW,EACX,YAAY,EACZ,WAAW,EACX,WAAW,EACX,eAAe,EACf,eAAe,EACf,gBAAgB,EAChB,eAAe,GAChB,MAAM,YAAY,CAAC;AAUpB,YAAY,EAAE,WAAW,EAAE,YAAY,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAC;AACjF,OAAO,EACL,wBAAwB,EACxB,cAAc,EACd,uBAAuB,EACvB,QAAQ,EACR,cAAc,EACd,aAAa,EACb,eAAe,EACf,cAAc,EACd,UAAU,GACX,MAAM,aAAa,CAAC;AAMrB,OAAO,EACL,qBAAqB,EACrB,eAAe,EACf,eAAe,EACf,qBAAqB,EACrB,eAAe,EACf,eAAe,EACf,sBAAsB,EACtB,gCAAgC,EAChC,gBAAgB,EAChB,OAAO,GACR,MAAM,gBAAgB,CAAC;AAOxB,OAAO,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AACvD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,mBAAmB,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AACvE,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mBAAmB,CAAC;AACzD,OAAO,EAAE,WAAW,EAAE,SAAS,EAAE,iBAAiB,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAC7F,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAC;AACzD,OAAO,EAAE,iBAAiB,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAQnE,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAC3C,OAAO,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAC9C,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAM1C,OAAO,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAE,gBAAgB,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAMpE,OAAO,EACL,sBAAsB,EACtB,uBAAuB,EACvB,uBAAuB,GACxB,MAAM,wBAAwB,CAAC;AAChC,OAAO,EAAE,gBAAgB,EAAE,eAAe,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAC/E,OAAO,EAAE,iBAAiB,EAAE,YAAY,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AACpF,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAC1C,OAAO,EAAE,OAAO,EAAE,eAAe,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AACnF,OAAO,EACL,aAAa,EACb,kBAAkB,EAClB,gBAAgB,GACjB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC"}

package/dist/index.js

@@ -33,7 +33,7 @@ export { decodeDigital } from './decode/digital.js';
 export { clampToDigitalRange, toPhysical } from './decode/physical.js';
 export { formatDiagnostics } from './diagnostics/format.js';
 export { formatStartTimeNaive } from './header/dates.js';
-export { findSignals, getSignal, isAnnotationLabel } from './header/lookup.js';
+export { findSignals, getSignal, isAnnotationLabel, matchSignals } from './header/lookup.js';
 export { parseHeader } from './header/parse.js';
 export { decodeAnnotations } from './tal/annotations.js';
 export { resolveTimeWindow, trimToWindow } from './time/window.js';

package/dist/index.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.1.18",
+  "version": "0.2.0",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",

package/src/constants.ts

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.1.18';
+export const VERSION = '0.2.0';

package/src/envelope.ts

@@ -288,6 +288,7 @@ function foldChunk(
 export function toPhysicalEnvelope(
   signal: EdfSignal,
   envelope: EdfEnvelopeSignal,
+  out?: EdfPhysicalEnvelope,
 ): EdfPhysicalEnvelope {
   const scale = signal.scale;
   if (scale === undefined) {
@@ -299,9 +300,25 @@ export function toPhysicalEnvelope(
     );
   }
 
+  /*
+   * `out` reuses the caller's arrays. An envelope is the render-loop path — a viewer redraws on
+   * every pan, zoom and resize — so allocating two Float64Arrays per frame is the one allocation
+   * here worth letting a caller avoid. `toPhysical` already takes an `out` for the same reason;
+   * this is the same contract, including refusing an array that is too short rather than
+   * silently writing fewer values than the caller will read.
+   */
   const length = envelope.min.length;
-  const low = new Float64Array(length);
-  const high = new Float64Array(length);
+  if (out !== undefined && (out.min.length < length || out.max.length < length)) {
+    throw new RangeError(
+      `out holds ${Math.min(out.min.length, out.max.length)} buckets but this envelope has ` +
+        `${length}. Next: size both arrays to envelope.min.length, or omit out and let ` +
+        'toPhysicalEnvelope allocate.',
+    );
+  }
+  // A longer `out` is narrowed to a view over its own memory, so reuse allocates nothing while
+  // the result length stays equal to the real bucket count.
+  const low = out === undefined ? new Float64Array(length) : out.min.subarray(0, length);
+  const high = out === undefined ? new Float64Array(length) : out.max.subarray(0, length);
   const decreasing = scale.bitValue < 0;
 
   for (let i = 0; i < length; i += 1) {

package/src/header/lookup.ts

@@ -79,3 +79,25 @@ export function getSignal(header: EdfHeader, selector: number | string): EdfSign
     { label: trimEdfField(selector), matchingIndices },
   );
 }
+
+/**
+ * Every data signal whose label matches a pattern.
+ *
+ * `findSignals` matches one exact label, which is right when you know what you want. This is for
+ * the other case: a montage is a family — `EEG Fpz-Cz`, `EEG Pz-Oz` — and picking it out by hand
+ * means filtering `header.signals` and remembering to drop the annotations channel, which is the
+ * step people forget. Its bytes are TAL text, so decoding them as samples produces numbers that
+ * look like a signal.
+ *
+ * Annotation channels are never returned. Pass a RegExp or a predicate; a plain string is the
+ * exact-match case `findSignals` already covers.
+ */
+export function matchSignals(
+  header: EdfHeader,
+  match: RegExp | ((label: string) => boolean),
+): readonly EdfSignal[] {
+  const test = match instanceof RegExp ? (label: string): boolean => match.test(label) : match;
+  return Object.freeze(
+    header.signals.filter((signal) => signal.kind === 'data' && test(signal.label)),
+  );
+}

package/src/index.ts

@@ -131,7 +131,7 @@ export { decodeDigital } from './decode/digital.js';
 export { clampToDigitalRange, toPhysical } from './decode/physical.js';
 export { formatDiagnostics } from './diagnostics/format.js';
 export { formatStartTimeNaive } from './header/dates.js';
-export { findSignals, getSignal, isAnnotationLabel } from './header/lookup.js';
+export { findSignals, getSignal, isAnnotationLabel, matchSignals } from './header/lookup.js';
 export { parseHeader } from './header/parse.js';
 export { decodeAnnotations } from './tal/annotations.js';
 export { resolveTimeWindow, trimToWindow } from './time/window.js';