edfcore 0.1.17 → 0.1.19

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Files changed (11) hide show
  1. package/CHANGELOG.md +125 -0
  2. package/README.md +11 -0
  3. package/dist/constants.d.ts +1 -1
  4. package/dist/constants.js +1 -1
  5. package/dist/envelope.d.ts +1 -1
  6. package/dist/envelope.d.ts.map +1 -1
  7. package/dist/envelope.js +17 -3
  8. package/dist/envelope.js.map +1 -1
  9. package/package.json +2 -1
  10. package/src/constants.ts +1 -1
  11. package/src/envelope.ts +19 -2
package/CHANGELOG.md ADDED
@@ -0,0 +1,125 @@
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+ # Changelog
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+
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+ Notable changes per release. Fixes say what was wrong and what it cost, because a version number
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+ alone does not tell you whether you were affected.
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+
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+ edfcore is pre-1.0. Patch releases have carried behaviour changes where the old behaviour was a
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+ defect; those are called out below.
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+
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+ ## 0.1.19
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+
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+ - **Added** an optional `out` parameter to `toPhysicalEnvelope`, matching `toPhysical`. An
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+ envelope is the render-loop path, so two `Float64Array` allocations per frame is the one
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+ allocation worth letting a caller avoid.
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+
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+ ## 0.1.18
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+
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+ - **Added** this changelog, and documentation for the CLI.
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+
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+ ## 0.1.17
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+
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+ - **Added** a CLI: `npx edfcore header|validate|events|json <file>`. Exit codes are the contract —
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+ 0 success, 1 unreadable or failed validation, 2 bad usage — so `edfcore validate` gates a CI job
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+ without parsing output. Patient identification is opt-in.
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+
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+ ## 0.1.16
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+
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+ - **Added** an exhaustiveness check to the public API test. It was an allowlist, which only proved
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+ that listed exports exist; fifteen helpers reached npm undocumented because nothing failed.
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+
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+ ## 0.1.15
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+
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+ - **Fixed** `readEnvelope` reporting `precededByGap: undefined` on every chunk, so an EDF+D
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+ envelope claimed no gaps. Introduced in 0.1.7. At one bucket per pixel a gap is invisible in the
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+ data itself, so a viewer had nothing to go on.
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+
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+ ## 0.1.14
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+
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+ - **Added** [API — helpers](https://edfcore.vercel.app/docs/api-helpers), documenting everything
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+ shipped in 0.1.7 through 0.1.13.
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+
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+ ## 0.1.13
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+
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+ - **Added** `formatValidationReport` to `edfcore/validate`.
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+
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+ ## 0.1.12
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+
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+ - **Added** `formatHeader`. Omits patient identification unless asked.
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+
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+ ## 0.1.11
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+
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+ - **Added** `sampleIndexAt`, `sampleStartTicks`, `sampleStartSeconds`. `Math.round(seconds *
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+ sampleRateHz)` drifts by one over a long recording when the rate has no exact float
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+ representation, and yields `NaN` for a zero record duration.
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+
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+ ## 0.1.10
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+
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+ - **Added** `filterAnnotationsByTime`, `filterAnnotationsByText`, `countAnnotationsByText`. All
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+ comparisons are on `onsetTicks`, not on float seconds.
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+
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+ ## 0.1.9
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+
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+ - **Added** `streamRecords`, an async iterator over a window with bounded memory.
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+
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+ ## 0.1.8
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+
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+ - **Added** BioSemi Status-channel helpers: `getStatusSignal`, `decodeStatusWord`, `readTriggers`.
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+ One event per change of the trigger word, not one per sample.
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+
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+ ## 0.1.7
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+
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+ - **Added** min/max envelope decimation: `readEnvelope`, `toPhysicalEnvelope`,
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+ `envelopeOfSamples`. `toPhysicalEnvelope` swaps the bounds when the gain is negative, which
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+ `toPhysical` applied twice would not.
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+
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+ ## 0.1.6
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+
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+ - **Fixed** `validateRecording` throwing `RangeError: Maximum call stack size exceeded` once a
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+ sweep collected about 125,000 diagnostics. `push(...array)` passes each element as a call
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+ argument. A 32 MiB file with 130,000 records and a damaged annotation section reached it
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+ honestly, and the thrown value was neither an `EdfError` nor a caller mistake.
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+ - **Fixed** record onsets wrapping silently in their `BigInt64Array` for an overflowing record
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+ duration, producing an index that reported `coverage: 'complete'` with one segment per record,
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+ negative gaps, and no diagnostic. A declared span past the tick range is now refused with a new
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+ fatal `RECORDING_SPAN_UNREPRESENTABLE`.
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+
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+ ## 0.1.5
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+
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+ - **Changed** `readWindow` to validate `signalIndices` before resolving the window. An
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+ out-of-range index previously threw for a window over data and returned `[]` for a window past
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+ the end — and `[]` is documented to mean "no records here", never "the read failed".
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+
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+ ## 0.1.4
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+
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+ - **Fixed** a record whose timekeeping TAL is missing deriving its onset from zero rather than
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+ from the recording's start. Three failures came from this one gap: a missing TAL in the last
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+ record faked a discontinuity and made `readWindow` refuse an entire conforming file; the scan
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+ chunk size changed the onsets, the segments and even a fatal `TIMELINE_NOT_MONOTONIC`; and the
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+ same record reported two different start times depending on how many neighbours were read with
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+ it.
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+
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+ ## 0.1.3
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+
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+ - **Fixed** `cachedSource` returning fabricated zero bytes when `blockBytes` or `maxBytes` was
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+ `NaN`. The `< 1` guard cannot fire for `NaN`.
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+ - **Fixed** `httpSource` hanging forever on a `NaN` `maxConcurrency` — no error, no timeout.
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+ - **Fixed** `httpSource` re-downloading a Range-ignoring resource once per concurrent read. 32
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+ concurrent reads cost 32 full transfers; now one.
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+ - **Fixed** a source-level `AbortSignalLike` shim being ignored, so the same object behaved
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+ differently depending on where it was passed.
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+ - **Fixed** `validateRecording` allocating its scan scratch buffer without checking
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+ `maxMaterializeBytes`, reachable as 400 MB from one corrupted field in a 512-byte file.
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+
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+ ## 0.1.2
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+
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+ - Release tooling only.
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+
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+ ## 0.1.1
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+
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+ - **Fixed** a false claim in the README: `strictNullChecks` does not catch an unguarded
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+ `toPhysical` call. The type stops you reading the gain; it does not gate the call.
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+ - **Fixed** three README links that 404ed on npmjs.com.
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+
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+ ## 0.1.0
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+
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+ First release. Reads EDF, EDF+, BDF and BDF+ with real random access.
package/README.md CHANGED
@@ -7,6 +7,17 @@ Node. Real random access, no dependencies.
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  npm install edfcore
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  ```
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+ ## Look at a file without writing code
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+
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+ ```bash
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+ npx edfcore header overnight.edf # signals, rates, ranges, diagnostics
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+ npx edfcore events hypnogram.edf # annotations, counted by text
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+ npx edfcore validate overnight.edf # full conformance sweep; exits 1 on failure
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+ npx edfcore json overnight.edf # the header as JSON, for jq
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+ ```
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+
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+ Patient identification is omitted unless you pass `--patient`.
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+
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  ## How do I read an EDF file in JavaScript?
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  Open a source, pick a signal, read a time window, convert it to physical units. In the browser,
package/dist/constants.d.ts CHANGED
@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
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  readonly reserved: 224;
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export declare const VERSION = "0.1.17";
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+ export declare const VERSION = "0.1.19";
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  //# sourceMappingURL=constants.d.ts.map
package/dist/constants.js CHANGED
@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
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  reserved: 224,
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  };
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  /** Published package version. Kept in sync with package.json by a test. */
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- export const VERSION = '0.1.17';
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+ export const VERSION = '0.1.19';
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  //# sourceMappingURL=constants.js.map
package/dist/envelope.d.ts CHANGED
@@ -37,7 +37,7 @@ export declare function readEnvelope(recording: EdfRecording, selection: Envelop
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  * digital value to the largest physical one. Mapping `min` to `min` would then produce an
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  * envelope whose lower bound is above its upper bound, and a viewer would draw it inside out.
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  */
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- export declare function toPhysicalEnvelope(signal: EdfSignal, envelope: EdfEnvelopeSignal): EdfPhysicalEnvelope;
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+ export declare function toPhysicalEnvelope(signal: EdfSignal, envelope: EdfEnvelopeSignal, out?: EdfPhysicalEnvelope): EdfPhysicalEnvelope;
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  /**
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  * The envelope of an already-decoded chunk signal, without another read.
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  *
package/dist/envelope.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"envelope.d.ts","sourceRoot":"","sources":["../src/envelope.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAUH,OAAO,KAAK,EACV,cAAc,EAEd,gBAAgB,EAChB,iBAAiB,EAEjB,mBAAmB,EACnB,YAAY,EACZ,SAAS,EACT,iBAAiB,EACjB,WAAW,EAEZ,MAAM,YAAY,CAAC;AAsBpB;;;;;GAKG;AACH,wBAAsB,YAAY,CAChC,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,iBAAiB,EAC5B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,gBAAgB,EAAE,CAAC,CAkBtC;AAyLD;;;;;;;;GAQG;AACH,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,SAAS,EACjB,QAAQ,EAAE,iBAAiB,GAC1B,mBAAmB,CAuBrB;AAED;;;;;GAKG;AACH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,iBAAiB,CAkCjG"}
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+ {"version":3,"file":"envelope.d.ts","sourceRoot":"","sources":["../src/envelope.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAUH,OAAO,KAAK,EACV,cAAc,EAEd,gBAAgB,EAChB,iBAAiB,EAEjB,mBAAmB,EACnB,YAAY,EACZ,SAAS,EACT,iBAAiB,EACjB,WAAW,EAEZ,MAAM,YAAY,CAAC;AAsBpB;;;;;GAKG;AACH,wBAAsB,YAAY,CAChC,SAAS,EAAE,YAAY,EACvB,SAAS,EAAE,iBAAiB,EAC5B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,SAAS,gBAAgB,EAAE,CAAC,CAkBtC;AAyLD;;;;;;;;GAQG;AACH,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,SAAS,EACjB,QAAQ,EAAE,iBAAiB,EAC3B,GAAG,CAAC,EAAE,mBAAmB,GACxB,mBAAmB,CAuCrB;AAED;;;;;GAKG;AACH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,iBAAiB,CAkCjG"}
package/dist/envelope.js CHANGED
@@ -204,16 +204,30 @@ function foldChunk(accumulator, header, bytes, slice, run, bucketCount, options)
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  * digital value to the largest physical one. Mapping `min` to `min` would then produce an
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  * envelope whose lower bound is above its upper bound, and a viewer would draw it inside out.
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  */
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- export function toPhysicalEnvelope(signal, envelope) {
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+ export function toPhysicalEnvelope(signal, envelope, out) {
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  const scale = signal.scale;
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  if (scale === undefined) {
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  throw new EdfScalingError(`signal ${signal.index} (${JSON.stringify(signal.label)}) has no usable scale, so its ` +
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  'envelope has no physical units. Next: check signal.scale before converting, or plot ' +
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  'the digital envelope as it is.', { code: 'SCALE_UNAVAILABLE', signalIndex: signal.index, label: signal.label });
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  }
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+ /*
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+ * `out` reuses the caller's arrays. An envelope is the render-loop path — a viewer redraws on
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+ * every pan, zoom and resize — so allocating two Float64Arrays per frame is the one allocation
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+ * here worth letting a caller avoid. `toPhysical` already takes an `out` for the same reason;
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+ * this is the same contract, including refusing an array that is too short rather than
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+ * silently writing fewer values than the caller will read.
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+ */
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  const length = envelope.min.length;
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- const low = new Float64Array(length);
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- const high = new Float64Array(length);
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+ if (out !== undefined && (out.min.length < length || out.max.length < length)) {
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+ throw new RangeError(`out holds ${Math.min(out.min.length, out.max.length)} buckets but this envelope has ` +
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+ `${length}. Next: size both arrays to envelope.min.length, or omit out and let ` +
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+ 'toPhysicalEnvelope allocate.');
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+ }
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+ // A longer `out` is narrowed to a view over its own memory, so reuse allocates nothing while
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+ // the result length stays equal to the real bucket count.
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+ const low = out === undefined ? new Float64Array(length) : out.min.subarray(0, length);
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+ const high = out === undefined ? new Float64Array(length) : out.max.subarray(0, length);
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  const decreasing = scale.bitValue < 0;
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  for (let i = 0; i < length; i += 1) {
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  const a = scale.bitValue * (scale.offset + envelope.min[i]);
package/dist/envelope.js.map CHANGED
@@ -1 +1 @@
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- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "edfcore",
3
- "version": "0.1.17",
3
+ "version": "0.1.19",
4
4
  "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
5
5
  "keywords": [
6
6
  "edf",
@@ -32,6 +32,7 @@
32
32
  "type": "module",
33
33
  "sideEffects": false,
34
34
  "files": [
35
+ "CHANGELOG.md",
35
36
  "dist",
36
37
  "src"
37
38
  ],
package/src/constants.ts CHANGED
@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
93
93
  } as const;
94
94
 
95
95
  /** Published package version. Kept in sync with package.json by a test. */
96
- export const VERSION = '0.1.17';
96
+ export const VERSION = '0.1.19';
package/src/envelope.ts CHANGED
@@ -288,6 +288,7 @@ function foldChunk(
288
288
  export function toPhysicalEnvelope(
289
289
  signal: EdfSignal,
290
290
  envelope: EdfEnvelopeSignal,
291
+ out?: EdfPhysicalEnvelope,
291
292
  ): EdfPhysicalEnvelope {
292
293
  const scale = signal.scale;
293
294
  if (scale === undefined) {
@@ -299,9 +300,25 @@ export function toPhysicalEnvelope(
299
300
  );
300
301
  }
301
302
 
303
+ /*
304
+ * `out` reuses the caller's arrays. An envelope is the render-loop path — a viewer redraws on
305
+ * every pan, zoom and resize — so allocating two Float64Arrays per frame is the one allocation
306
+ * here worth letting a caller avoid. `toPhysical` already takes an `out` for the same reason;
307
+ * this is the same contract, including refusing an array that is too short rather than
308
+ * silently writing fewer values than the caller will read.
309
+ */
302
310
  const length = envelope.min.length;
303
- const low = new Float64Array(length);
304
- const high = new Float64Array(length);
311
+ if (out !== undefined && (out.min.length < length || out.max.length < length)) {
312
+ throw new RangeError(
313
+ `out holds ${Math.min(out.min.length, out.max.length)} buckets but this envelope has ` +
314
+ `${length}. Next: size both arrays to envelope.min.length, or omit out and let ` +
315
+ 'toPhysicalEnvelope allocate.',
316
+ );
317
+ }
318
+ // A longer `out` is narrowed to a view over its own memory, so reuse allocates nothing while
319
+ // the result length stays equal to the real bucket count.
320
+ const low = out === undefined ? new Float64Array(length) : out.min.subarray(0, length);
321
+ const high = out === undefined ? new Float64Array(length) : out.max.subarray(0, length);
305
322
  const decreasing = scale.bitValue < 0;
306
323
 
307
324
  for (let i = 0; i < length; i += 1) {