edfcore 0.1.15 → 0.1.17

package/dist/cli-run.d.ts

@@ -0,0 +1,23 @@
+/**
+ * What `npx edfcore` actually does, with the process factored out.
+ *
+ * `cli.ts` is a shell that supplies real `node:fs` and `node:process`; everything decidable lives
+ * here, behind an injected `CliIo`. That is not ceremony — a CLI tested by spawning a subprocess
+ * can only be tested once the package is built, so the tests either skip in CI or test a stale
+ * binary. This way the exit codes and the output are ordinary unit tests.
+ */
+/** Everything the CLI touches outside itself. */
+export interface CliIo {
+    readFile(path: string): Promise<Uint8Array>;
+    out(text: string): void;
+    err(text: string): void;
+}
+export interface Args {
+    readonly command: string | undefined;
+    readonly file: string | undefined;
+    readonly patient: boolean;
+    readonly limit: number | undefined;
+}
+export declare function parseArgs(argv: readonly string[]): Args;
+export declare function runCli(args: Args, io: CliIo): Promise<number>;
+//# sourceMappingURL=cli-run.d.ts.map

package/dist/cli-run.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli-run.js

@@ -0,0 +1,126 @@
+/**
+ * What `npx edfcore` actually does, with the process factored out.
+ *
+ * `cli.ts` is a shell that supplies real `node:fs` and `node:process`; everything decidable lives
+ * here, behind an injected `CliIo`. That is not ceremony — a CLI tested by spawning a subprocess
+ * can only be tested once the package is built, so the tests either skip in CI or test a stale
+ * binary. This way the exit codes and the output are ordinary unit tests.
+ */
+import { countAnnotationsByText } from './annotations-query.js';
+import { formatDiagnostics } from './diagnostics/format.js';
+import { formatHeader } from './format-header.js';
+import { formatValidationReport } from './format-report.js';
+import { byteSource } from './io/bytes.js';
+import { openEdf, readAnnotations } from './recording.js';
+import { validateRecording } from './validate.js';
+const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
+
+  npx edfcore header <file>       the header, the signals, and any diagnostics
+  npx edfcore validate <file>     a full conformance sweep, scanning every sample
+  npx edfcore events <file>       the annotations, counted by text
+  npx edfcore json <file>         the header as JSON, for piping into jq
+
+Options
+  --patient                       include patient identification (header, json)
+  --limit <n>                     individual diagnostics to print (default 20)
+
+Exit codes: 0 success, 1 the file is unreadable or failed validation, 2 bad usage.
+`;
+export function parseArgs(argv) {
+    const positional = [];
+    let patient = false;
+    let limit;
+    for (let i = 0; i < argv.length; i += 1) {
+        const arg = argv[i];
+        if (arg === '--patient')
+            patient = true;
+        else if (arg === '--limit') {
+            const value = Number(argv[i + 1]);
+            // A NaN limit would disable the cap silently, which is the opposite of what was asked for.
+            if (!Number.isSafeInteger(value) || value < 0) {
+                throw new RangeError(`--limit needs a whole number, received ${String(argv[i + 1])}`);
+            }
+            limit = value;
+            i += 1;
+        }
+        else if (arg !== undefined && !arg.startsWith('-'))
+            positional.push(arg);
+    }
+    return { command: positional[0], file: positional[1], patient, limit };
+}
+async function open(io, file) {
+    // Read whole rather than fileSource: a CLI invocation is one pass over one file, and holding
+    // it in memory removes any question of a descriptor outliving the process.
+    return openEdf(byteSource(await io.readFile(file)));
+}
+export async function runCli(args, io) {
+    const { command, file } = args;
+    if (command === undefined || command === 'help' || command === '--help') {
+        io.out(USAGE);
+        return command === undefined ? 2 : 0;
+    }
+    if (file === undefined) {
+        io.err(`edfcore ${command}: no file given\n\n${USAGE}`);
+        return 2;
+    }
+    switch (command) {
+        case 'header': {
+            const recording = await open(io, file);
+            io.out(`${formatHeader(recording.header, { includePatientId: args.patient })}\n`);
+            if (recording.header.diagnostics.length > 0) {
+                io.out(`\n${formatDiagnostics(recording.header.diagnostics, { maxItems: args.limit ?? 20 })}\n`);
+            }
+            return 0;
+        }
+        case 'validate': {
+            const recording = await open(io, file);
+            const report = await validateRecording(recording, { scanSamples: true });
+            io.out(`${formatValidationReport(report, { header: recording.header, maxItems: args.limit ?? 20 })}\n`);
+            // Exit 1 on failure so a CI job can gate on it without parsing the output.
+            return report.ok ? 0 : 1;
+        }
+        case 'events': {
+            const recording = await open(io, file);
+            const { annotations } = await readAnnotations(recording, {
+                start: 0,
+                count: recording.header.recordCount,
+            });
+            if (annotations.length === 0) {
+                io.out('no annotations\n');
+                return 0;
+            }
+            io.out(`${annotations.length} annotation(s)\n\n`);
+            for (const { text, count } of countAnnotationsByText(annotations)) {
+                io.out(`${String(count).padStart(8)}  ${text}\n`);
+            }
+            return 0;
+        }
+        case 'json': {
+            const recording = await open(io, file);
+            const { header } = recording;
+            io.out(`${JSON.stringify({
+                variant: header.variant,
+                recordCount: header.recordCount,
+                recordDurationSeconds: header.recordDurationSeconds,
+                spanSeconds: recording.timeline.spanSeconds,
+                // Patient identification is opt-in here for the same reason it is in formatHeader:
+                // the obvious thing to do with this output is pipe it somewhere.
+                ...(args.patient ? { patient: header.patient.raw.trim() } : {}),
+                signals: header.signals.map((signal) => ({
+                    index: signal.index,
+                    label: signal.label,
+                    kind: signal.kind,
+                    samplesPerRecord: signal.samplesPerRecord,
+                    sampleRateHz: signal.sampleRateHz,
+                    physicalDimension: signal.physicalDimension,
+                })),
+                diagnostics: header.diagnostics.map((d) => ({ code: d.code, severity: d.severity })),
+            }, null, 2)}\n`);
+            return 0;
+        }
+        default:
+            io.err(`edfcore: unknown command ${JSON.stringify(command)}\n\n${USAGE}`);
+            return 2;
+    }
+}
+//# sourceMappingURL=cli-run.js.map

package/dist/cli-run.js.map

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package/dist/cli.d.ts

@@ -0,0 +1,16 @@
+#!/usr/bin/env node
+/**
+ * `npx edfcore` — looking at a file without writing code.
+ *
+ * A separate entry point, never re-exported from the barrel, because it imports `node:fs` and
+ * `node:process`. The universal entry must stay free of Node built-ins, and a test asserts it.
+ *
+ * This file is only the wiring. The decisions live in `cli-run.ts`, so they can be tested without
+ * spawning a process against a build that may not exist yet.
+ *
+ * `main()` runs unconditionally rather than behind an `import.meta.url === process.argv[1]` guard.
+ * That guard is a known trap for a bin: `npx` runs the command through a symlink, so the two paths
+ * differ, the condition is false, and the CLI exits 0 having done nothing.
+ */
+export {};
+//# sourceMappingURL=cli.d.ts.map

package/dist/cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;;;;;;;GAYG"}

package/dist/cli.js

@@ -0,0 +1,51 @@
+#!/usr/bin/env node
+/**
+ * `npx edfcore` — looking at a file without writing code.
+ *
+ * A separate entry point, never re-exported from the barrel, because it imports `node:fs` and
+ * `node:process`. The universal entry must stay free of Node built-ins, and a test asserts it.
+ *
+ * This file is only the wiring. The decisions live in `cli-run.ts`, so they can be tested without
+ * spawning a process against a build that may not exist yet.
+ *
+ * `main()` runs unconditionally rather than behind an `import.meta.url === process.argv[1]` guard.
+ * That guard is a known trap for a bin: `npx` runs the command through a symlink, so the two paths
+ * differ, the condition is false, and the CLI exits 0 having done nothing.
+ */
+// biome-ignore lint/suspicious/noTsIgnore: @ts-expect-error errors when unused — see node.ts.
+// @ts-ignore 'node:fs/promises' has no declarations under `types: []`; its shape is below.
+import * as nodeFsPromises from 'node:fs/promises';
+// biome-ignore lint/suspicious/noTsIgnore: as above.
+// @ts-ignore 'node:process' has no declarations under `types: []`; its shape is below.
+import * as nodeProcess from 'node:process';
+import { parseArgs, runCli } from './cli-run.js';
+import { isEdfError } from './errors.js';
+const fs = nodeFsPromises;
+const proc = nodeProcess.default ??
+    nodeProcess;
+const io = {
+    readFile: (path) => fs.readFile(path),
+    out: (text) => {
+        proc.stdout.write(text);
+    },
+    err: (text) => {
+        proc.stderr.write(text);
+    },
+};
+async function main() {
+    try {
+        proc.exitCode = await runCli(parseArgs(proc.argv.slice(2)), io);
+    }
+    catch (error) {
+        // An EdfError already says what is wrong, where, and what to do next; a stack trace over the
+        // top of it would bury the one useful line.
+        const message = isEdfError(error) || error instanceof Error ? error.message : String(error);
+        proc.stderr.write(`edfcore: ${message}\n`);
+        proc.exitCode = 1;
+    }
+}
+// Not `await main()`: the package documents that no module in its graph uses top-level await,
+// which is what keeps require() safe on Node >= 22.12. main() catches everything, so it cannot
+// reject, and Node keeps the process alive until it settles.
+void main();
+//# sourceMappingURL=cli.js.map

package/dist/cli.js.map

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package/dist/constants.d.ts

@@ -109,5 +109,5 @@ export declare const SIGNAL_FIELD_BLOCK_OFFSETS: {
     readonly reserved: 224;
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export declare const VERSION = "0.1.15";
+export declare const VERSION = "0.1.17";
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.js

@@ -79,5 +79,5 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
     reserved: 224,
 };
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.1.15';
+export const VERSION = '0.1.17';
 //# sourceMappingURL=constants.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edfcore",
-  "version": "0.1.15",
+  "version": "0.1.17",
   "description": "Modern, typed, zero-dependency reader for EDF, EDF+, BDF and BDF+ biosignal files. Works in browsers and Node with true random access.",
   "keywords": [
     "edf",
@@ -74,5 +74,8 @@
   },
   "publishConfig": {
     "access": "public"
+  },
+  "bin": {
+    "edfcore": "./dist/cli.js"
   }
 }

package/src/cli-run.ts

@@ -0,0 +1,158 @@
+/**
+ * What `npx edfcore` actually does, with the process factored out.
+ *
+ * `cli.ts` is a shell that supplies real `node:fs` and `node:process`; everything decidable lives
+ * here, behind an injected `CliIo`. That is not ceremony — a CLI tested by spawning a subprocess
+ * can only be tested once the package is built, so the tests either skip in CI or test a stale
+ * binary. This way the exit codes and the output are ordinary unit tests.
+ */
+
+import { countAnnotationsByText } from './annotations-query.js';
+import { formatDiagnostics } from './diagnostics/format.js';
+import { formatHeader } from './format-header.js';
+import { formatValidationReport } from './format-report.js';
+import { byteSource } from './io/bytes.js';
+import { openEdf, readAnnotations } from './recording.js';
+import { validateRecording } from './validate.js';
+
+/** Everything the CLI touches outside itself. */
+export interface CliIo {
+  readFile(path: string): Promise<Uint8Array>;
+  out(text: string): void;
+  err(text: string): void;
+}
+
+const USAGE = `edfcore — read EDF, EDF+, BDF and BDF+ files
+
+  npx edfcore header <file>       the header, the signals, and any diagnostics
+  npx edfcore validate <file>     a full conformance sweep, scanning every sample
+  npx edfcore events <file>       the annotations, counted by text
+  npx edfcore json <file>         the header as JSON, for piping into jq
+
+Options
+  --patient                       include patient identification (header, json)
+  --limit <n>                     individual diagnostics to print (default 20)
+
+Exit codes: 0 success, 1 the file is unreadable or failed validation, 2 bad usage.
+`;
+
+export interface Args {
+  readonly command: string | undefined;
+  readonly file: string | undefined;
+  readonly patient: boolean;
+  readonly limit: number | undefined;
+}
+
+export function parseArgs(argv: readonly string[]): Args {
+  const positional: string[] = [];
+  let patient = false;
+  let limit: number | undefined;
+
+  for (let i = 0; i < argv.length; i += 1) {
+    const arg = argv[i];
+    if (arg === '--patient') patient = true;
+    else if (arg === '--limit') {
+      const value = Number(argv[i + 1]);
+      // A NaN limit would disable the cap silently, which is the opposite of what was asked for.
+      if (!Number.isSafeInteger(value) || value < 0) {
+        throw new RangeError(`--limit needs a whole number, received ${String(argv[i + 1])}`);
+      }
+      limit = value;
+      i += 1;
+    } else if (arg !== undefined && !arg.startsWith('-')) positional.push(arg);
+  }
+
+  return { command: positional[0], file: positional[1], patient, limit };
+}
+
+async function open(io: CliIo, file: string) {
+  // Read whole rather than fileSource: a CLI invocation is one pass over one file, and holding
+  // it in memory removes any question of a descriptor outliving the process.
+  return openEdf(byteSource(await io.readFile(file)));
+}
+
+export async function runCli(args: Args, io: CliIo): Promise<number> {
+  const { command, file } = args;
+  if (command === undefined || command === 'help' || command === '--help') {
+    io.out(USAGE);
+    return command === undefined ? 2 : 0;
+  }
+  if (file === undefined) {
+    io.err(`edfcore ${command}: no file given\n\n${USAGE}`);
+    return 2;
+  }
+
+  switch (command) {
+    case 'header': {
+      const recording = await open(io, file);
+      io.out(`${formatHeader(recording.header, { includePatientId: args.patient })}\n`);
+      if (recording.header.diagnostics.length > 0) {
+        io.out(
+          `\n${formatDiagnostics(recording.header.diagnostics, { maxItems: args.limit ?? 20 })}\n`,
+        );
+      }
+      return 0;
+    }
+
+    case 'validate': {
+      const recording = await open(io, file);
+      const report = await validateRecording(recording, { scanSamples: true });
+      io.out(
+        `${formatValidationReport(report, { header: recording.header, maxItems: args.limit ?? 20 })}\n`,
+      );
+      // Exit 1 on failure so a CI job can gate on it without parsing the output.
+      return report.ok ? 0 : 1;
+    }
+
+    case 'events': {
+      const recording = await open(io, file);
+      const { annotations } = await readAnnotations(recording, {
+        start: 0,
+        count: recording.header.recordCount,
+      });
+      if (annotations.length === 0) {
+        io.out('no annotations\n');
+        return 0;
+      }
+      io.out(`${annotations.length} annotation(s)\n\n`);
+      for (const { text, count } of countAnnotationsByText(annotations)) {
+        io.out(`${String(count).padStart(8)}  ${text}\n`);
+      }
+      return 0;
+    }
+
+    case 'json': {
+      const recording = await open(io, file);
+      const { header } = recording;
+      io.out(
+        `${JSON.stringify(
+          {
+            variant: header.variant,
+            recordCount: header.recordCount,
+            recordDurationSeconds: header.recordDurationSeconds,
+            spanSeconds: recording.timeline.spanSeconds,
+            // Patient identification is opt-in here for the same reason it is in formatHeader:
+            // the obvious thing to do with this output is pipe it somewhere.
+            ...(args.patient ? { patient: header.patient.raw.trim() } : {}),
+            signals: header.signals.map((signal) => ({
+              index: signal.index,
+              label: signal.label,
+              kind: signal.kind,
+              samplesPerRecord: signal.samplesPerRecord,
+              sampleRateHz: signal.sampleRateHz,
+              physicalDimension: signal.physicalDimension,
+            })),
+            diagnostics: header.diagnostics.map((d) => ({ code: d.code, severity: d.severity })),
+          },
+          null,
+          2,
+        )}\n`,
+      );
+      return 0;
+    }
+
+    default:
+      io.err(`edfcore: unknown command ${JSON.stringify(command)}\n\n${USAGE}`);
+      return 2;
+  }
+}

package/src/cli.ts

@@ -0,0 +1,65 @@
+#!/usr/bin/env node
+/**
+ * `npx edfcore` — looking at a file without writing code.
+ *
+ * A separate entry point, never re-exported from the barrel, because it imports `node:fs` and
+ * `node:process`. The universal entry must stay free of Node built-ins, and a test asserts it.
+ *
+ * This file is only the wiring. The decisions live in `cli-run.ts`, so they can be tested without
+ * spawning a process against a build that may not exist yet.
+ *
+ * `main()` runs unconditionally rather than behind an `import.meta.url === process.argv[1]` guard.
+ * That guard is a known trap for a bin: `npx` runs the command through a symlink, so the two paths
+ * differ, the condition is false, and the CLI exits 0 having done nothing.
+ */
+
+// biome-ignore lint/suspicious/noTsIgnore: @ts-expect-error errors when unused — see node.ts.
+// @ts-ignore 'node:fs/promises' has no declarations under `types: []`; its shape is below.
+import * as nodeFsPromises from 'node:fs/promises';
+// biome-ignore lint/suspicious/noTsIgnore: as above.
+// @ts-ignore 'node:process' has no declarations under `types: []`; its shape is below.
+import * as nodeProcess from 'node:process';
+import { type CliIo, parseArgs, runCli } from './cli-run.js';
+import { isEdfError } from './errors.js';
+
+interface NodeFs {
+  readFile(path: string): Promise<Uint8Array>;
+}
+interface NodeProcess {
+  readonly argv: readonly string[];
+  exitCode: number | undefined;
+  readonly stdout: { write(text: string): unknown };
+  readonly stderr: { write(text: string): unknown };
+}
+
+const fs: NodeFs = nodeFsPromises as unknown as NodeFs;
+const proc: NodeProcess =
+  (nodeProcess as unknown as { default?: NodeProcess }).default ??
+  (nodeProcess as unknown as NodeProcess);
+
+const io: CliIo = {
+  readFile: (path) => fs.readFile(path),
+  out: (text) => {
+    proc.stdout.write(text);
+  },
+  err: (text) => {
+    proc.stderr.write(text);
+  },
+};
+
+async function main(): Promise<void> {
+  try {
+    proc.exitCode = await runCli(parseArgs(proc.argv.slice(2)), io);
+  } catch (error) {
+    // An EdfError already says what is wrong, where, and what to do next; a stack trace over the
+    // top of it would bury the one useful line.
+    const message = isEdfError(error) || error instanceof Error ? error.message : String(error);
+    proc.stderr.write(`edfcore: ${message}\n`);
+    proc.exitCode = 1;
+  }
+}
+
+// Not `await main()`: the package documents that no module in its graph uses top-level await,
+// which is what keeps require() safe on Node >= 22.12. main() catches everything, so it cannot
+// reject, and Node keeps the process alive until it settles.
+void main();

package/src/constants.ts

@@ -93,4 +93,4 @@ export const SIGNAL_FIELD_BLOCK_OFFSETS = {
 } as const;
 
 /** Published package version. Kept in sync with package.json by a test. */
-export const VERSION = '0.1.15';
+export const VERSION = '0.1.17';