edf2csv 0.9.26 → 0.9.28
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/dist/convert/timing.js
CHANGED
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@@ -66,7 +66,7 @@ export function deriveRecordStarts(file, annotationData) {
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first record that states a time and never counts the events, which is the bound that
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keeps it a header read.
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*/
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69
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-
hint: 'Every entry that could be read
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69
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+
hint: 'Every entry that could be read is exported. The file may have been written by a ' +
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'non-conforming tool.',
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});
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}
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@@ -1 +1 @@
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1
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-
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type { Diagnostic } from '../edf/errors.js';\nimport type { EdfFile } from '../edf/reader.js';\nimport { counted, grouped, listed } from '../format/list.js';\nimport { plainSeconds } from '../format/number.js';\n\nexport interface AnnotationTimingData {\n recordStarts: (number | null)[];\n malformed: number;\n /** Unreadable TALs in first position, which carry timing rather than an event. */\n malformedTimekeeping?: number;\n malformedTimekeepingWithText?: number;\n}\n\n/**\n * The EDF+D warning's promise, withdrawn when the file cannot keep it.\n *\n * The header parser raises DISCONTINUOUS with the hint \"Each row carries its true recording\n * time, so gaps stay visible instead of being closed\" — which is what an EDF+D conversion\n * does, when the record times can be read. When they cannot, the very next warning in the\n * same run says the opposite: \"Times are written as if the records were contiguous. Any gaps\n * are lost.\" Two warnings, printed together, and the second denies the first.\n *\n * The parser cannot know: whether the starts can be derived is settled here, after the\n * annotation channel has been read. So the hint is amended where the answer is, the same way\n * `withoutFileRateWarning` drops a header diagnostic the plan has superseded.\n */\nexport function withTimingPromiseKept(\n diagnostics: readonly Diagnostic[],\n derived: boolean,\n): Diagnostic[] {\n if (derived) return [...diagnostics];\n return diagnostics.map((d) =>\n d.code === 'DISCONTINUOUS' && d.hint?.includes('gaps stay visible')\n ? {\n ...d,\n hint:\n 'Where its records sit in time is not recorded in this file, so they are written ' +\n 'as if contiguous — see the warning below.',\n }\n : d,\n );\n}\n\n/**\n * Resolve the true start time of every data record.\n *\n * Continuous recordings need no table because their record positions are\n * arithmetic. EDF+D recordings carry their positions in the annotation channel;\n * missing or malformed timekeeping entries are reported before falling back.\n */\nexport function deriveRecordStarts(\n file: EdfFile,\n annotationData: AnnotationTimingData,\n): { starts: Float64Array | null; diagnostics: Diagnostic[] } {\n const diagnostics: Diagnostic[] = [];\n\n if (annotationData.malformed > 0) {\n diagnostics.push({\n code: 'ANNOTATION_DECODE_FAILED',\n severity: 'warning',\n // Through `counted`, with the irregular plural spelled out — which is the case its\n // own comment names and which nothing was using it for.\n message:\n `${counted(annotationData.malformed, 'annotation entry', 'annotation entries')} ` +\n `${annotationData.malformed === 1 ? 'was' : 'were'} unreadable and could not be exported.`,\n /*\n \"The rest were exported normally\" was said whether or not there was a rest.\n\n A writer that cannot state an onset tends not to manage it anywhere, so a file whose\n every event entry is unreadable is the ordinary way here — and it was answered with\n the count of what was lost and a sentence saying the remainder came through, over an\n annotations.csv holding its header and no rows:\n\n warning: 2 annotation entries were unreadable and could not be exported.\n The rest were exported normally. ...\n\n Wrote scoring_csv\n annotations.csv 0 rows\n\n Four lines apart, the summary settling it. Same shape as the \"No event was lost\"\n sentence forty lines down, which was corrected for the same reason: a hint true of\n most files is not true of the one it is printed over.\n\n Said without counting, rather than by counting. What makes the old sentence wrong is\n that it asserts a remainder exists; what it was for is the assurance that nothing\n readable was dropped, and that holds however many were readable. Counting instead\n would have split `--info` from a conversion — the scan behind `--info` stops at the\n first record that states a time and never counts the events, which is the bound that\n keeps it a header read.\n */\n hint:\n 'Every entry that could be read was exported. The file may have been written by a ' +\n 'non-conforming tool.',\n });\n }\n\n\n /*\n A timekeeping TAL is not an event, and saying it \"could not be exported\" describes the\n wrong loss twice over.\n\n These were counted among the annotations, so a file with one unreadable timekeeping TAL\n and three good events announced \"1 annotation entry was unreadable and could not be\n exported\" — while exporting all three. Nothing was missing from annotations.csv; what\n went missing was a record's position in time, which the message never mentioned.\n */\n const lostTimekeeping = annotationData.malformedTimekeeping ?? 0;\n const withText = annotationData.malformedTimekeepingWithText ?? 0;\n // The EDF+D branch below raises its own, which names the records and is more specific.\n // Saying both would report one problem twice.\n if (lostTimekeeping > 0 && file.header.continuity !== 'EDF+D') {\n const one = lostTimekeeping === 1;\n diagnostics.push({\n code: 'ANNOTATION_DECODE_FAILED',\n severity: 'warning',\n // Through `counted`, like the four other counts of \"data record\" in this file. This one\n // spelled the noun and the verb by hand — `record${one ? '' : 's'} carr${one ? 'ies' :\n // 'y'}` — while its nearest neighbour, sixty lines down and about the same records,\n // writes `${counted(n, 'data record')} ${one ? 'carries' : 'carry'}`. Same phrase, same\n // file, two spellings, and only one of them can be checked against the helper.\n message:\n `${counted(lostTimekeeping, 'data record')} ${one ? 'carries' : 'carry'} a timekeeping ` +\n `annotation that could not be read, so ${one ? 'it does' : 'they do'} not say where in ` +\n `time ${one ? 'it sits' : 'they sit'}.`,\n hint:\n /*\n \"No event was lost\" was said whatever the entry held.\n\n A first-position TAL states the record's start time and may carry events after it,\n which the specification allows and writers do. When one of those cannot be parsed\n the events go with it: a six-event file came out with two, and the only warning\n about it said in so many words that nothing had gone. Those entries are counted\n among the unreadable ones now, which is the warning printed above this one; this\n sentence keeps to what is true of the entries it is actually about.\n */\n /*\n Grouped, like the count of the same records one line above it.\n\n The message says `counted(lostTimekeeping, 'data record')`; the hint under it counts\n a subset of those records and spelled the number by hand. When the subset is all of\n them — which is the ordinary case, since a writer that cannot state an onset tends\n not to manage it anywhere — the two print the same number two lines apart, one\n grouped and one not:\n\n warning: 1,010 data records carry a timekeeping annotation that could not be\n read, so they do not say where in time they sit.\n 1010 of them also carried event text, which went with them and is\n counted above.\n */\n (withText > 0\n ? `${withText === 1 ? 'One of them' : `${grouped(withText)} of them`} also carried event text, ` +\n `which went with ${withText === 1 ? 'it' : 'them'} and is counted above. A ` +\n `timekeeping annotation itself states a record's start time and is never exported. `\n : 'No event was lost — a timekeeping annotation states a record\\'s start time and ' +\n 'is never exported. ') + 'Times are derived from the records that could be read.',\n });\n }\n\n /*\n A continuous recording's records are contiguous, but the first one need not sit at zero.\n\n EDF+ puts the header's start time and every annotation onset on one origin, and says the\n first data record's timekeeping TAL \"always starts with +0.X\", stating the fraction of a\n second by which that record follows it. Ignoring that fraction timed the samples from 0\n while the events kept their true onsets, so the two ended up on origins half a second\n apart — an event at +0.75 in a 4 Hz recording whose first TAL reads +0.5 landed on sample\n 3 instead of sample 1. The same file marked EDF+D, byte-identical but for the reserved\n field, placed it correctly, which is what gives the omission away.\n\n Records stay contiguous, which is what continuous means: only the origin moves. A first\n TAL of +0 needs no table at all, and that is nearly every file.\n */\n if (file.header.continuity !== 'EDF+D') {\n if (file.header.continuity !== 'EDF+C') {\n /*\n An annotation channel the reserved field never claimed.\n\n Without an `EDF+C` or `EDF+D` marker this is a plain EDF file, so the origin is not\n applied and the samples are timed from zero. The annotation channel is found by label\n rather than by the marker, though, so its events are still read and exported — with\n the onsets the file gives them.\n\n On a file whose timekeeping says the records start at 1000s, that put signals.csv at\n 0.000 and the event at 1000.5 in annotations.csv: two files from one conversion, a\n thousand seconds apart, and nothing said so. output-files promises the opposite —\n \"`onset_s` is on the same clock as `time_s` in the signal files\".\n\n Reported rather than repaired. Which clock is right is not knowable from here: the\n marker says plain EDF and the annotation channel says otherwise, and picking one would\n move either the samples or the events by the origin on a guess.\n */\n const stated = annotationData.recordStarts.find((start) => start !== null) ?? null;\n const base = file.header.isBdf ? 'BDF' : 'EDF';\n const plus = `${base}+`;\n if (stated !== null && Math.abs(stated) > 0) {\n diagnostics.push({\n code: 'MISSING_EDF_PLUS_MARKER',\n severity: 'warning',\n // The markers as this file spells them, which is what the contradiction warning\n // sixty lines down already does and what NO_SIGNAL_CHANNELS was fixed for. A BDF\n // recording was told to \"Mark the file EDF+C\" — not a value BDF+ defines — and\n // that it \"is read as plain EDF\", which it is not.\n message:\n `This file has an annotation channel stating that its records begin at ` +\n `${plainSeconds(stated)}s, but its reserved field carries no ${plus}C or ${plus}D ` +\n `marker — so it is read as plain ${base}, time_s counts from zero, and the two ` +\n `disagree by ${plainSeconds(stated)}s.`,\n hint:\n `annotations.csv keeps the onsets the file gives, so its events and signals.csv ` +\n `are on different clocks. Mark the file ${plus}C, or subtract the offset from ` +\n `the onsets, before joining them.`,\n });\n }\n return { starts: null, diagnostics };\n }\n\n /*\n The origin comes from whichever record first states one, not from record 0 alone.\n\n Reading only `recordStarts[0]` meant a single unreadable timekeeping TAL threw the\n origin away and timed the whole file from zero — while records 1 and 2, saying plainly\n that they start at 1.5s and 2.5s, went unread. A recording whose records sit at 0.5s,\n 1.5s and 2.5s came out with every sample 0.5s earlier than the file states, against\n annotation onsets that kept their true values. That is precisely the mismatch 0.4.9\n fixed, arriving through the one hole left in it, and the byte-identical EDF+D twin\n timed it correctly, which is what gives it away.\n\n Continuity is what makes this recoverable: record i sits at `origin + i * duration`,\n so any readable record determines the origin for all of them.\n */\n const origin = originOf(annotationData.recordStarts, file.header.recordDuration);\n if (origin === null) return { starts: null, diagnostics };\n\n const contiguous = new Float64Array(file.recordCount);\n for (let i = 0; i < file.recordCount; i++) {\n contiguous[i] = origin + i * file.header.recordDuration;\n }\n\n /*\n A file marked continuous whose own records disagree about it.\n\n Nothing looked at records past the first, so an EDF+C file whose records are in fact\n spread out was timed as though they were contiguous and said nothing. The records are\n being read here anyway, so the contradiction costs nothing to notice — and it is the\n file, not the reader, that has to be wrong for this to fire.\n\n Compared against what the file can express, not for equality. 0.4.41 asked whether the\n two doubles were the same, which they are not: a recording of 0.1s records sitting at\n 0.1, 0.2, 0.3 ... is contiguous by construction, and 0.1 + 2 * 0.1 is\n 0.30000000000000004. Two of its eight records were reported as contradicting\n continuity, on an ordinary file — and under --strict that was a failed run. The\n smallest interval the recording distinguishes is one sample of its fastest channel;\n anything below half of that is arithmetic, not a gap. `canCarry` has already refused\n origins where the double spacing swamps that interval, so the representation error is\n under the tolerance by construction rather than by hope.\n */\n const tolerance = finestInterval(file) / 2;\n const contradicting = annotationData.recordStarts.filter(\n (declared, i) =>\n typeof declared === 'number' && Math.abs(declared - (contiguous[i] as number)) > tolerance,\n ).length;\n if (contradicting > 0) {\n const continuous = file.header.isBdf ? 'BDF+C' : 'EDF+C';\n const discontinuous = file.header.isBdf ? 'BDF+D' : 'EDF+D';\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n /*\n The markers as the file spells them.\n\n `continuity` normalises `BDF+C` to the internal `EDF+C` tag, and that tag reached\n the message: a BDF+ recording was told it is \"marked continuous (EDF+C)\" — a string\n it does not contain — and advised that it \"should have been marked EDF+D\", which is\n not a value BDF+ defines. A reader grepping the header for either finds nothing.\n\n The sibling discontinuous warning has done this since 0.3.x: `${'$'}{isBdf ? 'BDF+D' :\n 'EDF+D'}`. Same code, same header field, and the continuous branch never got it.\n */\n /*\n Both counts grouped, which is the whole point of the sentence: it puts one against\n the other. 0.8.5 gave `counted` the grouping and went through the bare numbers\n standing beside it — including this exact phrase in the ANNOTATION_DECODE_FAILED\n warning eighty lines down, `${grouped(missing.length)} of ${counted(...)}` — and\n missed this one, so a three-thousand-record file read \"2999 of its 3,000 data\n records\", three words apart.\n */\n message:\n `This file is marked continuous (${continuous}), but ${grouped(contradicting)} of its ` +\n `${counted(file.recordCount, 'data record')} ` +\n `${contradicting === 1 ? 'says it starts' : 'say they start'} somewhere other than ` +\n `where continuity puts ${contradicting === 1 ? 'it' : 'them'}.`,\n hint:\n `Times are written as if the records were contiguous, which is what ${continuous} ` +\n `means. If the recording really has gaps, the file should have been marked ` +\n `${discontinuous}.`,\n });\n }\n const first = origin;\n const last = contiguous[file.recordCount - 1] ?? first;\n if (!canCarry(last, file)) {\n diagnostics.push(unusableOrigin(first, file));\n return { starts: null, diagnostics };\n }\n /*\n An origin of zero is the same as no origin, for timing. It is not the same for the\n check above.\n\n This returned early on `origin === 0`, which is right about the times — contiguous\n starts from zero are what timing from zero already produces — and skipped the\n contradiction check on the way past. So an EDF+C file whose records say 0, 5 and 10 on\n one-second records went unreported, while the same file shifted one second, saying 1, 6\n and 11, was reported. The contradiction is in records 1 and 2 either way; where record 0\n happens to sit decides nothing about it.\n */\n if (origin === 0) return { starts: null, diagnostics };\n return { starts: contiguous, diagnostics };\n }\n\n if (file.annotationSignals.length === 0) {\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n message:\n 'This file is marked discontinuous but has no annotation channel, so where its ' +\n 'records sit in time is not recorded anywhere.',\n hint: 'Times are written as if the records were contiguous. Any gaps are lost.',\n });\n return { starts: null, diagnostics };\n }\n\n /*\n A record with no readable time is placed from the origin the other records establish,\n not from zero.\n\n `i * recordDuration` assumed the recording began at zero, which is the one thing the\n other records are in a position to contradict: a file starting at 0.5s put its\n unreadable record at 0.000 while its neighbours sat at 1.5s and 2.5s. The guess is still\n a guess — a discontinuous file may have a gap exactly there — and it is still reported\n below, but starting it from where the recording actually begins is strictly closer, and\n it makes an EDF+D file agree with its byte-identical EDF+C twin about record 0.\n */\n const base = originOf(annotationData.recordStarts, file.header.recordDuration) ?? 0;\n const starts = new Float64Array(file.recordCount);\n const missing: number[] = [];\n for (let i = 0; i < file.recordCount; i++) {\n const declared = annotationData.recordStarts[i];\n if (declared === null || declared === undefined) {\n missing.push(i);\n starts[i] = base + i * file.header.recordDuration;\n } else {\n starts[i] = declared;\n }\n }\n\n if (missing.length > 0) {\n /*\n Cut by the function that cuts every other list in a sentence here.\n\n This one rolled its own: five items and a bare `…`, where `listed` shows eight and counts\n what it left — \"and 32 more\" on the rate warning, \"and 112 more\" on the leftover files.\n The count is the honest half, and 0.7.58 taught the shared one not to hide a single item\n behind a phrase longer than the item. None of that reached this message, because it was\n never asking. Two implementations of one job, differing in the limit and in what they say\n about the tail.\n */\n const shown = listed(missing.map(String));\n // \"1 of 3 data records carry ... their true position\" — the subject is the one, not the three.\n const one = missing.length === 1;\n diagnostics.push({\n code: 'ANNOTATION_DECODE_FAILED',\n severity: 'warning',\n message:\n `${grouped(missing.length)} of ${counted(file.recordCount, 'data record')} ${one ? 'carries' : 'carry'} no ` +\n `readable timekeeping annotation (record${one ? '' : 's'} ${shown}), so ` +\n `${one ? 'its' : 'their'} true position in time is unknown.`,\n hint: one\n ? 'That record is timed as if it were contiguous; treat its timestamp as unreliable.'\n : 'Those records are timed as if they were contiguous; treat their timestamps as unreliable.',\n });\n }\n\n /*\n Furthest from zero, in either direction.\n\n This took the signed maximum and seeded it with 0, so a recording whose records all sit\n at negative onsets never got past the seed: `furthest` stayed 0, which any interval can\n carry. Then the samples collapsed anyway, because the arithmetic that defeats a large\n positive origin defeats a large negative one identically — at -1e16 seconds, adding a\n 1-second sample interval leaves the double unchanged.\n\n A four-record recording of eight samples wrote two rows, exit 0, no warning. Its\n byte-for-byte positive mirror wrote all eight and explained why it had to time them from\n zero. Same file, same failure, opposite sign, opposite outcome — and the silent one is\n the one that loses data, which is exactly what unusableOrigin exists to prevent.\n */\n let furthest = 0;\n for (const start of starts) if (Math.abs(start) > Math.abs(furthest)) furthest = start;\n if (!canCarry(furthest, file)) {\n diagnostics.push(unusableOrigin(furthest, file));\n return { starts: null, diagnostics };\n }\n\n /*\n Two ways a record can put the time column out of order, and only one was being looked for.\n\n A record starting before the one before it is the obvious case. The other is a record\n starting before the one before it *ends*: starts of 0, 0.5 and 1.0 on one-second records\n are strictly increasing, so nothing fired, and the rows still came out 0.25, 0.5, 0.75,\n 0.5 — because record 0's samples run to 0.75 while record 1 begins at 0.5. Overlapping\n acquisition is what a device does when it re-sends a buffer, and the reader has no more\n to say about it than about the reversed case: every sample is written, in file order,\n with the time the file gives it.\n\n Contiguity is not overlap. A continuous recording has `starts[i] === starts[i-1] +\n duration` exactly, so the comparison is made strict by a fraction of the finest interval\n the recording can express — the same measure the origin check uses.\n */\n const slack = finestInterval(file) / 2;\n let outOfOrder = 0;\n let overlapping = 0;\n for (let i = 1; i < starts.length; i++) {\n const previous = starts[i - 1] as number;\n const current = starts[i] as number;\n if (current < previous) outOfOrder++;\n else if (current + slack < previous + file.header.recordDuration) overlapping++;\n }\n if (outOfOrder > 0) {\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n message:\n `${counted(outOfOrder, 'data record')} ` +\n `${outOfOrder === 1 ? 'starts' : 'start'} earlier than the record before ` +\n `${outOfOrder === 1 ? 'it' : 'them'}.`,\n hint: 'Rows are written in file order, so the time column will not increase monotonically.',\n });\n }\n if (overlapping > 0) {\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n message:\n `${counted(overlapping, 'data record')} ` +\n `${overlapping === 1 ? 'starts' : 'start'} before the record before ` +\n `${overlapping === 1 ? 'it' : 'them'} ends, so ${overlapping === 1 ? 'its' : 'their'} ` +\n `samples overlap in time.`,\n /*\n An overlap does not always put the column out of order, and this said it did.\n\n The two counts above share a sentence and only one of them earns it. A record starting\n *earlier* than the one before it steps the column back by construction. A record\n starting before the one before it *ends* need not: what decides is whether it begins\n after the previous record's last sample, and the last sample is one interval short of\n the record's end. Three-tenths of a second of overlap on a one-second record sampled\n twice a second writes\n\n time_s,A\n 0.000\n 0.500\n 0.700\n 1.200\n\n which increases at every step, under a warning saying it would not. Both records do\n describe 0.700 to 1.000, which is the thing that is true either way and is what the\n sentence says now.\n */\n hint:\n 'Rows are written in file order, and two records describe the same stretch of time. ' +\n 'Where they overlap by more than one sample interval the time column steps backwards.',\n });\n }\n\n return { starts, diagnostics };\n}\n\n/**\n * The recording's origin, from the first record that states where it is.\n *\n * Records of a continuous recording sit end to end, so record `i` beginning at `t` puts the\n * origin at `t - i * duration`. Any one readable timekeeping TAL is therefore enough, which\n * is what stops one unreadable entry from costing the whole file its position in time.\n */\nfunction originOf(recordStarts: readonly (number | null)[], recordDuration: number): number | null {\n for (const [index, declared] of recordStarts.entries()) {\n if (typeof declared !== 'number') continue;\n const origin = declared - index * recordDuration;\n return Number.isFinite(origin) ? origin : null;\n }\n return null;\n}\n\n/**\n * Whether times this far out can still tell one sample from the next.\n *\n * A double spaces its values further apart the larger they get: at 1e16 the gap is 2\n * seconds, so `t + 1` is `t`. Past that point a recording's declared origin stops being a\n * position and becomes a wall — the arithmetic that places records and samples returns the\n * origin itself, whatever is added to it.\n *\n * The finest thing that has to survive is the gap between two consecutive samples of the\n * fastest channel, since that is what the time column is made of. If that survives, so does\n * a whole record.\n */\nfunction canCarry(origin: number, file: EdfFile): boolean {\n if (!Number.isFinite(origin)) return false;\n // Asked of the origin furthest from zero, whichever side it is on: the spacing of doubles\n // grows with magnitude, not with value, so -1e16 and +1e16 fail this identically.\n return origin + finestInterval(file) > origin;\n}\n\n/**\n * The shortest span this recording can tell apart: one sample of its fastest channel.\n *\n * The time column is made of these, so nothing below one is a distinction the file is in a\n * position to make — which is what makes it the right size for both the \"can this origin\n * still separate two samples\" question and the \"is this record really somewhere else\"\n * question.\n */\nfunction finestInterval(file: EdfFile): number {\n let interval = file.header.recordDuration;\n for (const signal of file.header.signals) {\n if (signal.isAnnotations || !(signal.samplesPerRecord > 0)) continue;\n const step = file.header.recordDuration / signal.samplesPerRecord;\n if (step > 0 && step < interval) interval = step;\n }\n return interval;\n}\n\n/**\n * An origin the file's own arithmetic cannot express, reported rather than acted on.\n *\n * Two things went wrong when this was taken at face value, both of them quiet. A file whose\n * records all collapsed onto one instant made the recording zero seconds long, and the\n * window resolver — which had no reason to suspect the recording rather than the request —\n * blamed a flag nobody had passed:\n *\n * error: --start 100000000000000000s is at or past the end of this\n * 100000000000000000s recording.\n *\n * Slightly below that, the collapse is partial: `records[i].start + recordDuration` equals\n * the start again, so the test for \"does this record overlap the window\" fails for every\n * record whose neighbour rounded onto it. A twelve-row recording wrote four rows, exit 0,\n * no warning — the eight that vanished looked exactly like a file that never had them.\n *\n * Timing from zero is what the file did before 0.4.9 taught it to honour the first\n * timekeeping TAL, and at this magnitude it is the only column that can hold distinct\n * values. The origin is lost, so this says so.\n */\nfunction unusableOrigin(origin: number, file: EdfFile): Diagnostic {\n /*\n `Infinity` is a token, not a distance.\n\n `plain` expands exponent notation and hands anything else back, so a non-finite origin\n arrived on screen as \"place it Infinitys from its own start date\" — the exact form\n `formatDuration` exists to keep off the screen, its comment naming \"NaNs\" and \"Infinitys\"\n as what the fallback used to print, and the word the rest of this tool uses for the same\n quantity is \"unknown\". The origin overflows for the reason the recording's length does:\n a record duration near the top of a double, multiplied out over three records, leaves it.\n */\n const away = Number.isFinite(origin)\n ? `${plainSeconds(origin)}s from its own start date`\n : 'further from its own start date than a number can hold';\n return {\n code: 'DISCONTINUOUS',\n severity: 'warning',\n message:\n `This recording's timekeeping annotations place it ${away}, which is too far out for ` +\n `its ${plainSeconds(file.header.recordDuration)}s records to be told apart: at that magnitude ` +\n `adding a sample interval leaves the number unchanged.`,\n hint:\n 'Sample times are written from zero instead, so every row is present and the column ' +\n 'increases. Add the onsets in annotations.csv to recover absolute times if you need them.',\n };\n}\n"]}
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+
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type { Diagnostic } from '../edf/errors.js';\nimport type { EdfFile } from '../edf/reader.js';\nimport { counted, grouped, listed } from '../format/list.js';\nimport { plainSeconds } from '../format/number.js';\n\nexport interface AnnotationTimingData {\n recordStarts: (number | null)[];\n malformed: number;\n /** Unreadable TALs in first position, which carry timing rather than an event. */\n malformedTimekeeping?: number;\n malformedTimekeepingWithText?: number;\n}\n\n/**\n * The EDF+D warning's promise, withdrawn when the file cannot keep it.\n *\n * The header parser raises DISCONTINUOUS with the hint \"Each row carries its true recording\n * time, so gaps stay visible instead of being closed\" — which is what an EDF+D conversion\n * does, when the record times can be read. When they cannot, the very next warning in the\n * same run says the opposite: \"Times are written as if the records were contiguous. Any gaps\n * are lost.\" Two warnings, printed together, and the second denies the first.\n *\n * The parser cannot know: whether the starts can be derived is settled here, after the\n * annotation channel has been read. So the hint is amended where the answer is, the same way\n * `withoutFileRateWarning` drops a header diagnostic the plan has superseded.\n */\nexport function withTimingPromiseKept(\n diagnostics: readonly Diagnostic[],\n derived: boolean,\n): Diagnostic[] {\n if (derived) return [...diagnostics];\n return diagnostics.map((d) =>\n d.code === 'DISCONTINUOUS' && d.hint?.includes('gaps stay visible')\n ? {\n ...d,\n hint:\n 'Where its records sit in time is not recorded in this file, so they are written ' +\n 'as if contiguous — see the warning below.',\n }\n : d,\n );\n}\n\n/**\n * Resolve the true start time of every data record.\n *\n * Continuous recordings need no table because their record positions are\n * arithmetic. EDF+D recordings carry their positions in the annotation channel;\n * missing or malformed timekeeping entries are reported before falling back.\n */\nexport function deriveRecordStarts(\n file: EdfFile,\n annotationData: AnnotationTimingData,\n): { starts: Float64Array | null; diagnostics: Diagnostic[] } {\n const diagnostics: Diagnostic[] = [];\n\n if (annotationData.malformed > 0) {\n diagnostics.push({\n code: 'ANNOTATION_DECODE_FAILED',\n severity: 'warning',\n // Through `counted`, with the irregular plural spelled out — which is the case its\n // own comment names and which nothing was using it for.\n message:\n `${counted(annotationData.malformed, 'annotation entry', 'annotation entries')} ` +\n `${annotationData.malformed === 1 ? 'was' : 'were'} unreadable and could not be exported.`,\n /*\n \"The rest were exported normally\" was said whether or not there was a rest.\n\n A writer that cannot state an onset tends not to manage it anywhere, so a file whose\n every event entry is unreadable is the ordinary way here — and it was answered with\n the count of what was lost and a sentence saying the remainder came through, over an\n annotations.csv holding its header and no rows:\n\n warning: 2 annotation entries were unreadable and could not be exported.\n The rest were exported normally. ...\n\n Wrote scoring_csv\n annotations.csv 0 rows\n\n Four lines apart, the summary settling it. Same shape as the \"No event was lost\"\n sentence forty lines down, which was corrected for the same reason: a hint true of\n most files is not true of the one it is printed over.\n\n Said without counting, rather than by counting. What makes the old sentence wrong is\n that it asserts a remainder exists; what it was for is the assurance that nothing\n readable was dropped, and that holds however many were readable. Counting instead\n would have split `--info` from a conversion — the scan behind `--info` stops at the\n first record that states a time and never counts the events, which is the bound that\n keeps it a header read.\n */\n hint:\n 'Every entry that could be read is exported. The file may have been written by a ' +\n 'non-conforming tool.',\n });\n }\n\n\n /*\n A timekeeping TAL is not an event, and saying it \"could not be exported\" describes the\n wrong loss twice over.\n\n These were counted among the annotations, so a file with one unreadable timekeeping TAL\n and three good events announced \"1 annotation entry was unreadable and could not be\n exported\" — while exporting all three. Nothing was missing from annotations.csv; what\n went missing was a record's position in time, which the message never mentioned.\n */\n const lostTimekeeping = annotationData.malformedTimekeeping ?? 0;\n const withText = annotationData.malformedTimekeepingWithText ?? 0;\n // The EDF+D branch below raises its own, which names the records and is more specific.\n // Saying both would report one problem twice.\n if (lostTimekeeping > 0 && file.header.continuity !== 'EDF+D') {\n const one = lostTimekeeping === 1;\n diagnostics.push({\n code: 'ANNOTATION_DECODE_FAILED',\n severity: 'warning',\n // Through `counted`, like the four other counts of \"data record\" in this file. This one\n // spelled the noun and the verb by hand — `record${one ? '' : 's'} carr${one ? 'ies' :\n // 'y'}` — while its nearest neighbour, sixty lines down and about the same records,\n // writes `${counted(n, 'data record')} ${one ? 'carries' : 'carry'}`. Same phrase, same\n // file, two spellings, and only one of them can be checked against the helper.\n message:\n `${counted(lostTimekeeping, 'data record')} ${one ? 'carries' : 'carry'} a timekeeping ` +\n `annotation that could not be read, so ${one ? 'it does' : 'they do'} not say where in ` +\n `time ${one ? 'it sits' : 'they sit'}.`,\n hint:\n /*\n \"No event was lost\" was said whatever the entry held.\n\n A first-position TAL states the record's start time and may carry events after it,\n which the specification allows and writers do. When one of those cannot be parsed\n the events go with it: a six-event file came out with two, and the only warning\n about it said in so many words that nothing had gone. Those entries are counted\n among the unreadable ones now, which is the warning printed above this one; this\n sentence keeps to what is true of the entries it is actually about.\n */\n /*\n Grouped, like the count of the same records one line above it.\n\n The message says `counted(lostTimekeeping, 'data record')`; the hint under it counts\n a subset of those records and spelled the number by hand. When the subset is all of\n them — which is the ordinary case, since a writer that cannot state an onset tends\n not to manage it anywhere — the two print the same number two lines apart, one\n grouped and one not:\n\n warning: 1,010 data records carry a timekeeping annotation that could not be\n read, so they do not say where in time they sit.\n 1010 of them also carried event text, which went with them and is\n counted above.\n */\n (withText > 0\n ? `${withText === 1 ? 'One of them' : `${grouped(withText)} of them`} also carried event text, ` +\n `which went with ${withText === 1 ? 'it' : 'them'} and is counted above. A ` +\n `timekeeping annotation itself states a record's start time and is never exported. `\n : 'No event was lost — a timekeeping annotation states a record\\'s start time and ' +\n 'is never exported. ') + 'Times are derived from the records that could be read.',\n });\n }\n\n /*\n A continuous recording's records are contiguous, but the first one need not sit at zero.\n\n EDF+ puts the header's start time and every annotation onset on one origin, and says the\n first data record's timekeeping TAL \"always starts with +0.X\", stating the fraction of a\n second by which that record follows it. Ignoring that fraction timed the samples from 0\n while the events kept their true onsets, so the two ended up on origins half a second\n apart — an event at +0.75 in a 4 Hz recording whose first TAL reads +0.5 landed on sample\n 3 instead of sample 1. The same file marked EDF+D, byte-identical but for the reserved\n field, placed it correctly, which is what gives the omission away.\n\n Records stay contiguous, which is what continuous means: only the origin moves. A first\n TAL of +0 needs no table at all, and that is nearly every file.\n */\n if (file.header.continuity !== 'EDF+D') {\n if (file.header.continuity !== 'EDF+C') {\n /*\n An annotation channel the reserved field never claimed.\n\n Without an `EDF+C` or `EDF+D` marker this is a plain EDF file, so the origin is not\n applied and the samples are timed from zero. The annotation channel is found by label\n rather than by the marker, though, so its events are still read and exported — with\n the onsets the file gives them.\n\n On a file whose timekeeping says the records start at 1000s, that put signals.csv at\n 0.000 and the event at 1000.5 in annotations.csv: two files from one conversion, a\n thousand seconds apart, and nothing said so. output-files promises the opposite —\n \"`onset_s` is on the same clock as `time_s` in the signal files\".\n\n Reported rather than repaired. Which clock is right is not knowable from here: the\n marker says plain EDF and the annotation channel says otherwise, and picking one would\n move either the samples or the events by the origin on a guess.\n */\n const stated = annotationData.recordStarts.find((start) => start !== null) ?? null;\n const base = file.header.isBdf ? 'BDF' : 'EDF';\n const plus = `${base}+`;\n if (stated !== null && Math.abs(stated) > 0) {\n diagnostics.push({\n code: 'MISSING_EDF_PLUS_MARKER',\n severity: 'warning',\n // The markers as this file spells them, which is what the contradiction warning\n // sixty lines down already does and what NO_SIGNAL_CHANNELS was fixed for. A BDF\n // recording was told to \"Mark the file EDF+C\" — not a value BDF+ defines — and\n // that it \"is read as plain EDF\", which it is not.\n message:\n `This file has an annotation channel stating that its records begin at ` +\n `${plainSeconds(stated)}s, but its reserved field carries no ${plus}C or ${plus}D ` +\n `marker — so it is read as plain ${base}, time_s counts from zero, and the two ` +\n `disagree by ${plainSeconds(stated)}s.`,\n hint:\n `annotations.csv keeps the onsets the file gives, so its events and signals.csv ` +\n `are on different clocks. Mark the file ${plus}C, or subtract the offset from ` +\n `the onsets, before joining them.`,\n });\n }\n return { starts: null, diagnostics };\n }\n\n /*\n The origin comes from whichever record first states one, not from record 0 alone.\n\n Reading only `recordStarts[0]` meant a single unreadable timekeeping TAL threw the\n origin away and timed the whole file from zero — while records 1 and 2, saying plainly\n that they start at 1.5s and 2.5s, went unread. A recording whose records sit at 0.5s,\n 1.5s and 2.5s came out with every sample 0.5s earlier than the file states, against\n annotation onsets that kept their true values. That is precisely the mismatch 0.4.9\n fixed, arriving through the one hole left in it, and the byte-identical EDF+D twin\n timed it correctly, which is what gives it away.\n\n Continuity is what makes this recoverable: record i sits at `origin + i * duration`,\n so any readable record determines the origin for all of them.\n */\n const origin = originOf(annotationData.recordStarts, file.header.recordDuration);\n if (origin === null) return { starts: null, diagnostics };\n\n const contiguous = new Float64Array(file.recordCount);\n for (let i = 0; i < file.recordCount; i++) {\n contiguous[i] = origin + i * file.header.recordDuration;\n }\n\n /*\n A file marked continuous whose own records disagree about it.\n\n Nothing looked at records past the first, so an EDF+C file whose records are in fact\n spread out was timed as though they were contiguous and said nothing. The records are\n being read here anyway, so the contradiction costs nothing to notice — and it is the\n file, not the reader, that has to be wrong for this to fire.\n\n Compared against what the file can express, not for equality. 0.4.41 asked whether the\n two doubles were the same, which they are not: a recording of 0.1s records sitting at\n 0.1, 0.2, 0.3 ... is contiguous by construction, and 0.1 + 2 * 0.1 is\n 0.30000000000000004. Two of its eight records were reported as contradicting\n continuity, on an ordinary file — and under --strict that was a failed run. The\n smallest interval the recording distinguishes is one sample of its fastest channel;\n anything below half of that is arithmetic, not a gap. `canCarry` has already refused\n origins where the double spacing swamps that interval, so the representation error is\n under the tolerance by construction rather than by hope.\n */\n const tolerance = finestInterval(file) / 2;\n const contradicting = annotationData.recordStarts.filter(\n (declared, i) =>\n typeof declared === 'number' && Math.abs(declared - (contiguous[i] as number)) > tolerance,\n ).length;\n if (contradicting > 0) {\n const continuous = file.header.isBdf ? 'BDF+C' : 'EDF+C';\n const discontinuous = file.header.isBdf ? 'BDF+D' : 'EDF+D';\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n /*\n The markers as the file spells them.\n\n `continuity` normalises `BDF+C` to the internal `EDF+C` tag, and that tag reached\n the message: a BDF+ recording was told it is \"marked continuous (EDF+C)\" — a string\n it does not contain — and advised that it \"should have been marked EDF+D\", which is\n not a value BDF+ defines. A reader grepping the header for either finds nothing.\n\n The sibling discontinuous warning has done this since 0.3.x: `${'$'}{isBdf ? 'BDF+D' :\n 'EDF+D'}`. Same code, same header field, and the continuous branch never got it.\n */\n /*\n Both counts grouped, which is the whole point of the sentence: it puts one against\n the other. 0.8.5 gave `counted` the grouping and went through the bare numbers\n standing beside it — including this exact phrase in the ANNOTATION_DECODE_FAILED\n warning eighty lines down, `${grouped(missing.length)} of ${counted(...)}` — and\n missed this one, so a three-thousand-record file read \"2999 of its 3,000 data\n records\", three words apart.\n */\n message:\n `This file is marked continuous (${continuous}), but ${grouped(contradicting)} of its ` +\n `${counted(file.recordCount, 'data record')} ` +\n `${contradicting === 1 ? 'says it starts' : 'say they start'} somewhere other than ` +\n `where continuity puts ${contradicting === 1 ? 'it' : 'them'}.`,\n hint:\n `Times are written as if the records were contiguous, which is what ${continuous} ` +\n `means. If the recording really has gaps, the file should have been marked ` +\n `${discontinuous}.`,\n });\n }\n const first = origin;\n const last = contiguous[file.recordCount - 1] ?? first;\n if (!canCarry(last, file)) {\n diagnostics.push(unusableOrigin(first, file));\n return { starts: null, diagnostics };\n }\n /*\n An origin of zero is the same as no origin, for timing. It is not the same for the\n check above.\n\n This returned early on `origin === 0`, which is right about the times — contiguous\n starts from zero are what timing from zero already produces — and skipped the\n contradiction check on the way past. So an EDF+C file whose records say 0, 5 and 10 on\n one-second records went unreported, while the same file shifted one second, saying 1, 6\n and 11, was reported. The contradiction is in records 1 and 2 either way; where record 0\n happens to sit decides nothing about it.\n */\n if (origin === 0) return { starts: null, diagnostics };\n return { starts: contiguous, diagnostics };\n }\n\n if (file.annotationSignals.length === 0) {\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n message:\n 'This file is marked discontinuous but has no annotation channel, so where its ' +\n 'records sit in time is not recorded anywhere.',\n hint: 'Times are written as if the records were contiguous. Any gaps are lost.',\n });\n return { starts: null, diagnostics };\n }\n\n /*\n A record with no readable time is placed from the origin the other records establish,\n not from zero.\n\n `i * recordDuration` assumed the recording began at zero, which is the one thing the\n other records are in a position to contradict: a file starting at 0.5s put its\n unreadable record at 0.000 while its neighbours sat at 1.5s and 2.5s. The guess is still\n a guess — a discontinuous file may have a gap exactly there — and it is still reported\n below, but starting it from where the recording actually begins is strictly closer, and\n it makes an EDF+D file agree with its byte-identical EDF+C twin about record 0.\n */\n const base = originOf(annotationData.recordStarts, file.header.recordDuration) ?? 0;\n const starts = new Float64Array(file.recordCount);\n const missing: number[] = [];\n for (let i = 0; i < file.recordCount; i++) {\n const declared = annotationData.recordStarts[i];\n if (declared === null || declared === undefined) {\n missing.push(i);\n starts[i] = base + i * file.header.recordDuration;\n } else {\n starts[i] = declared;\n }\n }\n\n if (missing.length > 0) {\n /*\n Cut by the function that cuts every other list in a sentence here.\n\n This one rolled its own: five items and a bare `…`, where `listed` shows eight and counts\n what it left — \"and 32 more\" on the rate warning, \"and 112 more\" on the leftover files.\n The count is the honest half, and 0.7.58 taught the shared one not to hide a single item\n behind a phrase longer than the item. None of that reached this message, because it was\n never asking. Two implementations of one job, differing in the limit and in what they say\n about the tail.\n */\n const shown = listed(missing.map(String));\n // \"1 of 3 data records carry ... their true position\" — the subject is the one, not the three.\n const one = missing.length === 1;\n diagnostics.push({\n code: 'ANNOTATION_DECODE_FAILED',\n severity: 'warning',\n message:\n `${grouped(missing.length)} of ${counted(file.recordCount, 'data record')} ${one ? 'carries' : 'carry'} no ` +\n `readable timekeeping annotation (record${one ? '' : 's'} ${shown}), so ` +\n `${one ? 'its' : 'their'} true position in time is unknown.`,\n hint: one\n ? 'That record is timed as if it were contiguous; treat its timestamp as unreliable.'\n : 'Those records are timed as if they were contiguous; treat their timestamps as unreliable.',\n });\n }\n\n /*\n Furthest from zero, in either direction.\n\n This took the signed maximum and seeded it with 0, so a recording whose records all sit\n at negative onsets never got past the seed: `furthest` stayed 0, which any interval can\n carry. Then the samples collapsed anyway, because the arithmetic that defeats a large\n positive origin defeats a large negative one identically — at -1e16 seconds, adding a\n 1-second sample interval leaves the double unchanged.\n\n A four-record recording of eight samples wrote two rows, exit 0, no warning. Its\n byte-for-byte positive mirror wrote all eight and explained why it had to time them from\n zero. Same file, same failure, opposite sign, opposite outcome — and the silent one is\n the one that loses data, which is exactly what unusableOrigin exists to prevent.\n */\n let furthest = 0;\n for (const start of starts) if (Math.abs(start) > Math.abs(furthest)) furthest = start;\n if (!canCarry(furthest, file)) {\n diagnostics.push(unusableOrigin(furthest, file));\n return { starts: null, diagnostics };\n }\n\n /*\n Two ways a record can put the time column out of order, and only one was being looked for.\n\n A record starting before the one before it is the obvious case. The other is a record\n starting before the one before it *ends*: starts of 0, 0.5 and 1.0 on one-second records\n are strictly increasing, so nothing fired, and the rows still came out 0.25, 0.5, 0.75,\n 0.5 — because record 0's samples run to 0.75 while record 1 begins at 0.5. Overlapping\n acquisition is what a device does when it re-sends a buffer, and the reader has no more\n to say about it than about the reversed case: every sample is written, in file order,\n with the time the file gives it.\n\n Contiguity is not overlap. A continuous recording has `starts[i] === starts[i-1] +\n duration` exactly, so the comparison is made strict by a fraction of the finest interval\n the recording can express — the same measure the origin check uses.\n */\n const slack = finestInterval(file) / 2;\n let outOfOrder = 0;\n let overlapping = 0;\n for (let i = 1; i < starts.length; i++) {\n const previous = starts[i - 1] as number;\n const current = starts[i] as number;\n if (current < previous) outOfOrder++;\n else if (current + slack < previous + file.header.recordDuration) overlapping++;\n }\n if (outOfOrder > 0) {\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n message:\n `${counted(outOfOrder, 'data record')} ` +\n `${outOfOrder === 1 ? 'starts' : 'start'} earlier than the record before ` +\n `${outOfOrder === 1 ? 'it' : 'them'}.`,\n hint: 'Rows are written in file order, so the time column will not increase monotonically.',\n });\n }\n if (overlapping > 0) {\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n message:\n `${counted(overlapping, 'data record')} ` +\n `${overlapping === 1 ? 'starts' : 'start'} before the record before ` +\n `${overlapping === 1 ? 'it' : 'them'} ends, so ${overlapping === 1 ? 'its' : 'their'} ` +\n `samples overlap in time.`,\n /*\n An overlap does not always put the column out of order, and this said it did.\n\n The two counts above share a sentence and only one of them earns it. A record starting\n *earlier* than the one before it steps the column back by construction. A record\n starting before the one before it *ends* need not: what decides is whether it begins\n after the previous record's last sample, and the last sample is one interval short of\n the record's end. Three-tenths of a second of overlap on a one-second record sampled\n twice a second writes\n\n time_s,A\n 0.000\n 0.500\n 0.700\n 1.200\n\n which increases at every step, under a warning saying it would not. Both records do\n describe 0.700 to 1.000, which is the thing that is true either way and is what the\n sentence says now.\n */\n hint:\n 'Rows are written in file order, and two records describe the same stretch of time. ' +\n 'Where they overlap by more than one sample interval the time column steps backwards.',\n });\n }\n\n return { starts, diagnostics };\n}\n\n/**\n * The recording's origin, from the first record that states where it is.\n *\n * Records of a continuous recording sit end to end, so record `i` beginning at `t` puts the\n * origin at `t - i * duration`. Any one readable timekeeping TAL is therefore enough, which\n * is what stops one unreadable entry from costing the whole file its position in time.\n */\nfunction originOf(recordStarts: readonly (number | null)[], recordDuration: number): number | null {\n for (const [index, declared] of recordStarts.entries()) {\n if (typeof declared !== 'number') continue;\n const origin = declared - index * recordDuration;\n return Number.isFinite(origin) ? origin : null;\n }\n return null;\n}\n\n/**\n * Whether times this far out can still tell one sample from the next.\n *\n * A double spaces its values further apart the larger they get: at 1e16 the gap is 2\n * seconds, so `t + 1` is `t`. Past that point a recording's declared origin stops being a\n * position and becomes a wall — the arithmetic that places records and samples returns the\n * origin itself, whatever is added to it.\n *\n * The finest thing that has to survive is the gap between two consecutive samples of the\n * fastest channel, since that is what the time column is made of. If that survives, so does\n * a whole record.\n */\nfunction canCarry(origin: number, file: EdfFile): boolean {\n if (!Number.isFinite(origin)) return false;\n // Asked of the origin furthest from zero, whichever side it is on: the spacing of doubles\n // grows with magnitude, not with value, so -1e16 and +1e16 fail this identically.\n return origin + finestInterval(file) > origin;\n}\n\n/**\n * The shortest span this recording can tell apart: one sample of its fastest channel.\n *\n * The time column is made of these, so nothing below one is a distinction the file is in a\n * position to make — which is what makes it the right size for both the \"can this origin\n * still separate two samples\" question and the \"is this record really somewhere else\"\n * question.\n */\nfunction finestInterval(file: EdfFile): number {\n let interval = file.header.recordDuration;\n for (const signal of file.header.signals) {\n if (signal.isAnnotations || !(signal.samplesPerRecord > 0)) continue;\n const step = file.header.recordDuration / signal.samplesPerRecord;\n if (step > 0 && step < interval) interval = step;\n }\n return interval;\n}\n\n/**\n * An origin the file's own arithmetic cannot express, reported rather than acted on.\n *\n * Two things went wrong when this was taken at face value, both of them quiet. A file whose\n * records all collapsed onto one instant made the recording zero seconds long, and the\n * window resolver — which had no reason to suspect the recording rather than the request —\n * blamed a flag nobody had passed:\n *\n * error: --start 100000000000000000s is at or past the end of this\n * 100000000000000000s recording.\n *\n * Slightly below that, the collapse is partial: `records[i].start + recordDuration` equals\n * the start again, so the test for \"does this record overlap the window\" fails for every\n * record whose neighbour rounded onto it. A twelve-row recording wrote four rows, exit 0,\n * no warning — the eight that vanished looked exactly like a file that never had them.\n *\n * Timing from zero is what the file did before 0.4.9 taught it to honour the first\n * timekeeping TAL, and at this magnitude it is the only column that can hold distinct\n * values. The origin is lost, so this says so.\n */\nfunction unusableOrigin(origin: number, file: EdfFile): Diagnostic {\n /*\n `Infinity` is a token, not a distance.\n\n `plain` expands exponent notation and hands anything else back, so a non-finite origin\n arrived on screen as \"place it Infinitys from its own start date\" — the exact form\n `formatDuration` exists to keep off the screen, its comment naming \"NaNs\" and \"Infinitys\"\n as what the fallback used to print, and the word the rest of this tool uses for the same\n quantity is \"unknown\". The origin overflows for the reason the recording's length does:\n a record duration near the top of a double, multiplied out over three records, leaves it.\n */\n const away = Number.isFinite(origin)\n ? `${plainSeconds(origin)}s from its own start date`\n : 'further from its own start date than a number can hold';\n return {\n code: 'DISCONTINUOUS',\n severity: 'warning',\n message:\n `This recording's timekeeping annotations place it ${away}, which is too far out for ` +\n `its ${plainSeconds(file.header.recordDuration)}s records to be told apart: at that magnitude ` +\n `adding a sample interval leaves the number unchanged.`,\n hint:\n 'Sample times are written from zero instead, so every row is present and the column ' +\n 'increases. Add the onsets in annotations.csv to recover absolute times if you need them.',\n };\n}\n"]}
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package/dist/edf/header.js
CHANGED
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@@ -1057,7 +1057,7 @@ export function parseHeader(buf, fileSize) {
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1057
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severity: 'warning',
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message: `${counted(trailingBytes, 'byte')} after the last complete data record ${trailingBytes === 1 ? 'was' : 'were'} ignored.`,
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hint: 'A record is the unit this format is addressed in, and a partial one says nothing ' +
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-
'about which samples it holds or when they were taken. Every complete record
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+
'about which samples it holds or when they were taken. Every complete record is ' +
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1061
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'converted.',
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});
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}
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package/dist/edf/header.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
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* EDF / EDF+ header parsing.\n *\n * Layout (all fields are ASCII, left-justified, space-padded):\n *\n * fixed header, 256 bytes\n * 0 8 version ('0', or 255 + 'BIOSEMI' for BDF)\n * 8 80 patient identification\n * 88 80 recording identification\n * 168 8 start date dd.mm.yy\n * 176 8 start time hh.mm.ss\n * 184 8 number of bytes in the header record\n * 192 44 reserved ('EDF+C' / 'EDF+D' live here)\n * 236 8 number of data records (-1 if unknown)\n * 244 8 duration of a data record, in seconds (may be fractional)\n * 252 4 number of signals (ns)\n *\n * signal header, ns * 256 bytes, stored FIELD-major rather than signal-major:\n * all ns labels, then all ns transducer types, and so on.\n * ns * 16 label\n * ns * 80 transducer type\n * ns * 8 physical dimension\n * ns * 8 physical minimum\n * ns * 8 physical maximum\n * ns * 8 digital minimum\n * ns * 8 digital maximum\n * ns * 80 prefiltering\n * ns * 8 number of samples in each data record\n * ns * 32 reserved\n */\n\nimport { EdfError } from './errors.js';\nimport type { Diagnostic } from './errors.js';\nimport { counted, grouped, listed } from '../format/list.js';\nimport { plainSeconds } from '../format/number.js';\n// The shell-quoting rule for a label, shared rather than repeated: this hint and\n// `--channels`' own \"did you mean\" have to print the same command for the same label.\nimport { typeable } from '../convert/channels.js';\nimport { OptionError, describeValue } from '../convert/options.js';\nimport { decodeLatin1 } from './bytes.js';\n\n/** Label the EDF+ spec reserves for the annotations channel. */\nexport const ANNOTATIONS_LABEL = 'EDF Annotations';\n/** BDF+ uses its own spelling for the same channel. */\nexport const BDF_ANNOTATIONS_LABEL = 'BDF Annotations';\n\nexport const FIXED_HEADER_BYTES = 256;\nexport const SIGNAL_HEADER_BYTES = 256;\n\nexport interface EdfSignal {\n /** Position in the file, 0-based. Stable even when labels collide. */\n index: number;\n label: string;\n transducer: string;\n physicalDimension: string;\n physicalMin: number;\n physicalMax: number;\n digitalMin: number;\n digitalMax: number;\n prefiltering: string;\n samplesPerRecord: number;\n reserved: string;\n /** True for the EDF+ 'EDF Annotations' channel, which carries text, not signal. */\n isAnnotations: boolean;\n /** samplesPerRecord / recordDuration, in Hz. */\n samplingRate: number;\n /** Byte offset of this signal's samples within one data record. */\n byteOffsetInRecord: number;\n}\n\nexport interface EdfHeader {\n version: string;\n patientId: string;\n recordingId: string;\n /** Raw 'dd.mm.yy' as written in the file. */\n startDateRaw: string;\n /** Raw 'hh.mm.ss' as written in the file. */\n startTimeRaw: string;\n /** Resolved start instant, or null when the file's date/time fields are unusable. */\n startDateTime: Date | null;\n /**\n * Header size in bytes, computed from the signal count rather than read from the field.\n *\n * Every data record offset is derived from this, so it has to be the one the layout\n * actually uses: 256 for the fixed header plus 256 per signal. A writer that fills the\n * field in carelessly is common enough to have its own warning, HEADER_BYTES_MISMATCH,\n * and trusting the field over the arithmetic would put every sample at the wrong offset.\n */\n headerBytes: number;\n /**\n * What the header's own length field says, which need not be the above.\n *\n * Exposed for the same reason `declaredRecordCount` is: the two disagreeing is a fact\n * about the file, and a caller checking how a recording was written should be able to see\n * what it claimed rather than only what was believed.\n */\n declaredHeaderBytes: number;\n reserved: string;\n isEdfPlus: boolean;\n /** True for BioSemi BDF/BDF+ files, whose samples are 3 bytes rather than 2. */\n isBdf: boolean;\n /** 'EDF+C' continuous, 'EDF+D' discontinuous, or null for plain EDF. */\n continuity: 'EDF+C' | 'EDF+D' | null;\n /** As declared in the header. -1 means \"unknown\", which the spec permits. */\n declaredRecordCount: number;\n recordDuration: number;\n signalCount: number;\n signals: EdfSignal[];\n bytesPerSample: number;\n recordBytes: number;\n}\n\n/** Everything derived by combining the header with the file's real size. */\nexport interface EdfHeaderInfo {\n header: EdfHeader;\n /** Record count implied by the actual file size — the one we trust for reading. */\n recordCount: number;\n /** Bytes after the last complete data record. */\n trailingBytes: number;\n diagnostics: Diagnostic[];\n}\n\n/**\n * Whether a spreadsheet reads this field as the start of a formula rather than as text.\n *\n * `=` and `@` unconditionally; every list of these characters names two more, and this had\n * `-` as an exception with the reason written out on the warnings page: \"a lone `-` is a\n * real convention for no unit ... and neither is evaluated unless what follows it parses as a\n * formula\". Which is the condition, and it was not being applied — nothing with a leading\n * minus was flagged at all. A channel labelled `-2+3` opens as a column headed `1`, and\n * `-HYPERLINK(\"http://...\",\"EEG\")` is a name the spreadsheet resolves, in silence.\n *\n * So the exception is what it says it is rather than the whole character. A lone `-` is left\n * as text by every spreadsheet and is not flagged; a field that is entirely a number reads as\n * that number, which is what the header says, and is not flagged either. Anything else after\n * the minus is arithmetic or a name.\n *\n * And `+` takes the same exception, which it did not. It is the same rule in the spreadsheet —\n * Lotus compatibility, which converts a leading `+` or `-` to a formula when what follows one\n * parses as a formula and leaves it as text when it does not — so the two signs cannot differ\n * here for a reason that comes from the sign. A channel labelled `+100` was warned about as\n * something a spreadsheet \"reads as the start of a formula rather than as text\", over a cell\n * that opens as 100, which is what the header says; `-100` beside it said nothing, and under\n * `--strict` the difference was an exit code. `+1+1` is still arithmetic and still flagged.\n */\nexport function startsFormula(text: string): boolean {\n if (/^[=@]/u.test(text)) return true;\n if (!/^[+-]./u.test(text)) return false;\n // `\\.\\d*` and not `\\.\\d+`, which is the spelling DECIMAL_FIELD and DECIMAL_DURATION both\n // use for the same question. A trailing point is a number with nothing after it — Excel\n // opens `+1.` as 1 — and one character of difference between three copies of one grammar\n // had this warning firing on a field the paragraph above exempts by name, and failing\n // --strict for it.\n return !/^[+-](?:\\d+(?:\\.\\d*)?|\\.\\d+)(?:[eE][+-]?\\d+)?$/u.test(text);\n}\n\n/**\n * A byte the terminal treats as an instruction rather than as text.\n *\n * C0 and C1, plus DEL. Tab is included deliberately: it is harmless to a terminal but it\n * makes a CSV column name that cannot be typed or matched reliably, which is the other half\n * of what this warning is for.\n */\nfunction isControlCharacter(character: string): boolean {\n const code = character.codePointAt(0) as number;\n return code <= 0x1f || (code >= 0x7f && code <= 0x9f);\n}\n\nconst dec = (buf: Uint8Array, start: number, len: number): string =>\n decodeLatin1(buf, start, start + len);\n\n/** EDF fields are space-padded; trailing NULs also occur in files written by sloppy tools. */\nconst trimField = (s: string): string => s.replace(/[\\0\\s]+$/u, '').replace(/^\\s+/u, '');\n\n/**\n * How many signals the fixed header says there are, read exactly as `parseHeader` will.\n *\n * `EdfFile.open` needs this before it can know how much header to read, and it used to work\n * it out with its own `Number(...)` — which was NUL-tolerant but not comma-tolerant, unlike\n * every other numeric field here. A header written with a comma decimal separator, which\n * COMMA_DECIMAL exists to accept and which the documentation lists this field among, was\n * therefore never given its signal headers at all, and the file died on a message that\n * contradicted itself: \"needs a 768-byte header, but the file is only 848 bytes\".\n *\n * Sharing the parse is what keeps the two from disagreeing again about which files are\n * readable. Null means \"not a usable count\", and the caller reads no further header — the\n * real error then comes from `parseHeader`, which is the one place that decides.\n */\nexport function peekSignalCount(fixed: Uint8Array): number | null {\n const text = normaliseNumberField(dec(fixed, 252, 4)).text;\n if (!DECIMAL_FIELD.test(text)) return null;\n const count = Number(text);\n return Number.isInteger(count) && count > 0 ? count : null;\n}\n\n/**\n * What EDF allows a numeric field to look like, which is less than `Number()` allows.\n *\n * A sign, digits, an optional fractional part, an optional exponent — the spec's own grammar,\n * plus the exponent form the 8-character physical bounds need to reach a magnetometer's range\n * and which real headers use.\n *\n * `Number()` accepts a great deal more, and every one of those forms is a header this tool\n * would have read as a number nobody wrote. A physical maximum of `0x64` came out as 100: it\n * printed as `-100 to 100` in the channel table, went into channels.csv as `physical_max,100`,\n * and set the gain every sample on that channel was scaled by — a whole calibration invented\n * from four bytes that are not a decimal number, exit 0, no diagnostic. `0b1100100` and `0o144`\n * are the same hundred, and `0x02` in the signal-count field is a two-channel recording.\n *\n * The same mistake as `#0x2` reaching channel 2 through `--channels`, `--decimals 0o5` writing\n * five places and `--jobs 0x10` running sixteen, all of which have their own comments and their\n * own fixes. Those were values somebody typed. These are the fields every number in the output\n * is computed from, and the page describing them says \"all fields are ASCII\" and gives the\n * layout digit by digit.\n */\nconst DECIMAL_FIELD = /^[+-]?(?:\\d+(?:\\.\\d*)?|\\.\\d+)(?:[eE][+-]?\\d+)?$/u;\n\n/** A numeric header field, trimmed and with a comma decimal separator turned into a dot. */\nfunction normaliseNumberField(raw: string): { text: string; sawComma: boolean } {\n const text = trimField(raw);\n // Some writers emit a comma decimal separator despite the spec requiring '.'.\n if (text.includes(',') && !text.includes('.')) {\n return { text: text.replace(',', '.'), sawComma: true };\n }\n return { text, sawComma: false };\n}\n\n/**\n * What a header field that is not the number it must be usually means.\n *\n * `BAD_HEADER_FIELD` is raised four ways — an empty numeric field, one that does not parse, one\n * that must be whole and is not, and a signal declaring a negative sample count — and one of\n * the four carried this. The other three printed a bare sentence about a field and stopped,\n * which is the same gap `EdfFile.#UNREADABLE_HINT` was written to close on the read side: a\n * family of errors where one member says what the cause usually is and the rest do not.\n *\n * An empty field is if anything the plainer symptom of the two. A truncated download stops\n * mid-header and leaves the rest as spaces; a byte-shifted file reads a field off the wrong\n * offset and finds whitespace as often as it finds digits. The page has said all four mean\n * this since they were documented together.\n */\nconst BAD_FIELD_HINT = 'The file may be truncated, byte-shifted, or not an EDF file at all.';\n\nfunction parseNumberField(\n raw: string,\n field: string,\n { integer = false, sawComma }: { integer?: boolean; sawComma?: { value: boolean } } = {},\n): number {\n const normalised = normaliseNumberField(raw);\n const text = normalised.text;\n if (normalised.sawComma && sawComma) sawComma.value = true;\n if (text === '') {\n throw new EdfError('BAD_HEADER_FIELD', `Header field \"${field}\" is empty.`, BAD_FIELD_HINT);\n }\n const n = DECIMAL_FIELD.test(text) ? Number(text) : NaN;\n if (!Number.isFinite(n)) {\n throw new EdfError(\n 'BAD_HEADER_FIELD',\n `Header field \"${field}\" is not a number (found ${JSON.stringify(text)}).`,\n BAD_FIELD_HINT,\n );\n }\n if (integer && !Number.isInteger(n)) {\n throw new EdfError(\n 'BAD_HEADER_FIELD',\n `Header field \"${field}\" must be a whole number (found ${JSON.stringify(text)}).`,\n BAD_FIELD_HINT,\n );\n }\n return n;\n}\n\n/** Whether the start time names the sixtieth second. See LEAP_SECOND_START. */\nfunction namesLeapSecond(timeRaw: string): boolean {\n const t = /^(\\d{2})[.:\\-](\\d{2})[.:\\-](\\d{2})$/u.exec(trimField(timeRaw));\n return t !== null && Number(t[3]) === 60;\n}\n\nconst MONTHS = ['JAN', 'FEB', 'MAR', 'APR', 'MAY', 'JUN', 'JUL', 'AUG', 'SEP', 'OCT', 'NOV', 'DEC'];\n\n/**\n * The date an EDF+ recording ID states, which is the only place the file writes a full year.\n *\n * EDF+ requires the recording identification field to begin `Startdate dd-MMM-yyyy`, and\n * requires it to agree with the header's own date field. It is a four-digit year, so it says\n * something the eight-character date field physically cannot.\n */\nfunction recordingIdStartdate(\n recordingId: string,\n): { day: number; month: number; year: number } | null {\n const stated = /^Startdate\\s+(\\d{2})-([A-Za-z]{3})-(\\d{4})(?:\\s|$)/u.exec(recordingId.trim());\n if (!stated) return null;\n const month = MONTHS.indexOf((stated[2] as string).toUpperCase()) + 1;\n if (month === 0) return null;\n return { day: Number(stated[1]), month, year: Number(stated[3]) };\n}\n\n/**\n * EDF stores a two-digit year. The spec pins the century: 85-99 mean 1985-1999\n * and 00-84 mean 2000-2084. Files outside 1985-2084 cannot express their date.\n *\n * Which is why EDF+ writes it again in full, in the recording identification field, and why\n * that is used here when it is there. The rule alone reports a recording made in 1984 as 2084\n * and one made in 2085 as 1985 — a hundred years out, on a file that states the year plainly\n * four fields earlier. Taken only where the two agree about everything the header can express:\n * the same day, the same month, and a four-digit year ending in the two digits the header\n * wrote. A recording ID that contradicts the header is a different problem and is left to the\n * spec's rule, which is at least the one the format defines.\n */\nfunction resolveStartDateTime(\n dateRaw: string,\n timeRaw: string,\n recordingId = '',\n): Date | null {\n const d = /^(\\d{2})[.\\-/](\\d{2})[.\\-/](\\d{2})$/u.exec(trimField(dateRaw));\n const t = /^(\\d{2})[.:\\-](\\d{2})[.:\\-](\\d{2})$/u.exec(trimField(timeRaw));\n if (!d || !t) return null;\n\n const dd = Number(d[1]);\n const mm = Number(d[2]);\n const yy = Number(d[3]);\n const hh = Number(t[1]);\n const mi = Number(t[2]);\n const ss = Number(t[3]);\n\n if (mm < 1 || mm > 12 || dd < 1 || dd > 31 || hh > 23 || mi > 59 || ss > 60) return null;\n\n const stated = recordingIdStartdate(recordingId);\n const year =\n stated !== null && stated.day === dd && stated.month === mm && stated.year % 100 === yy\n ? stated.year\n : yy >= 85\n ? 1900 + yy\n : 2000 + yy;\n const date = new Date(Date.UTC(year, mm - 1, dd, hh, mi, Math.min(ss, 59)));\n // Reject dates that rolled over, e.g. 31.02.\n if (date.getUTCMonth() !== mm - 1 || date.getUTCDate() !== dd) return null;\n return date;\n}\n\n/**\n * Parse the fixed 256-byte header plus the per-signal header block.\n *\n * @param buf At least FIXED_HEADER_BYTES + ns * SIGNAL_HEADER_BYTES bytes.\n * @param fileSize Total size of the file on disk, used to derive the real record count.\n */\nexport function parseHeader(buf: Uint8Array, fileSize: number): EdfHeaderInfo {\n /*\n The first argument, checked before anything is read out of it.\n\n The api page offers this function on its own, so it is reached by a caller holding bytes\n they read themselves — and it took whatever it was handed. A number or a plain object came\n back as Node's own `TypeError: bytes.subarray is not a function`, which names a method the\n caller never called; `undefined` as a property read on a local.\n\n Worse, a string got an answer *about the recording*:\n\n parseHeader('0 ...', 4_000_000)\n EdfError FILE_TOO_SMALL: An EDF header alone needs 256 bytes, but only 11 of this\n 4,000,000-byte file reached the parser.\n\n A string has a `length`, so it reached the short-header branch below and was reported as a\n truncated file — the code a script branches on to quarantine a bad recording, raised over a\n recording nobody had read. That is the distinction `readRecords` draws in as many words:\n \"an `OptionError`, because it is the call that is wrong and not the recording\". The same\n check `decodeRecordAnnotations` makes of its own byte argument, for the reason given there.\n */\n /*\n A view of *bytes*, which `ArrayBuffer.isView` does not mean.\n\n It is true of every typed array and of `DataView`, and 0.8.74 read it as \"these are\n bytes\". Two views it lets through are not:\n\n parseHeader(new DataView(buffer), size)\n TypeError: bytes.subarray is not a function\n\n which is the exact failure that check was written to remove, quoted in its own changelog\n entry — a `DataView` has neither `subarray` nor `length`, so `buf.length < 256` is\n `undefined < 256`, false, and the guard below waves it through to the line that reads\n `buf[0]`. A `DataView` is what a caller reading a header by hand with `getUint8` holds.\n\n parseHeader(new Float64Array(100), 4_000_000)\n EdfError FILE_TOO_SMALL: ... only 100 of this 4,000,000-byte file reached the parser\n\n which is the other failure it was written to remove: `100` is the element count of a view\n holding 800 bytes, and the sentence blames the recording for it.\n\n `BYTES_PER_ELEMENT === 1` is the question actually being asked. It is true of `Uint8Array`,\n `Int8Array`, `Uint8ClampedArray` and the `Buffer` the reader hands this, and undefined on a\n `DataView`.\n */\n if (!ArrayBuffer.isView(buf) || (buf as { BYTES_PER_ELEMENT?: number }).BYTES_PER_ELEMENT !== 1) {\n /*\n A view is named rather than dumped.\n\n `describeValue` renders an object as its JSON, and a hundred-element `Float64Array` of\n header bytes comes back as a hundred doubles in the refusal — the caller's own data\n handed back, which is what 0.8.72 took out of the sentence next door. What locates the\n mistake is which view it is.\n */\n const takes =\n 'parseHeader takes the bytes read from the file — a Uint8Array or a Buffer, one byte ' +\n 'an element — and the size of the file they came out of.';\n throw new OptionError(\n ArrayBuffer.isView(buf)\n ? `buf is a ${(buf as object).constructor?.name ?? 'view'}, which is a view of an ` +\n `ArrayBuffer but not of bytes. ${takes}`\n : `buf must be the header block as bytes, got ${describeValue(buf)}. ${takes}`,\n );\n }\n\n /*\n The second argument, checked before anything is derived from it.\n\n Every count this function reports about the data comes out of `fileSize`, and nothing\n asked what it was. Omit it — which a JavaScript caller does by writing the call the way\n the one-argument functions beside it are written — and the arithmetic runs on `undefined`:\n\n parseHeader(bytes).recordCount // NaN\n parseHeader(bytes).diagnostics[0].message\n // \"The header declares 2 data records but the file contains NaN. Only the NaN\n // records that are present can be converted.\"\n\n A header object claiming NaN records, a warning that says NaN out loud, and no error —\n and `recordCount * recordDuration`, which is how the duration is worked out everywhere\n this value goes, is NaN from there on. `null` was worse from 0.8.5, when the counts in\n these messages started being grouped: grouping it is a TypeError raised from inside the\n number formatter, naming nothing the caller wrote.\n\n The same `OptionError` `assertInputPath` raises for the first argument of `EdfFile.open`,\n for the same reason given there: it is the call that is wrong, not the recording.\n */\n /*\n And a whole number of them, which that check did not ask for.\n\n A file has an integer number of bytes; `fs.stat` reports one, and every count derived here\n divides by a record length in bytes. A fraction survived the division and came out in the\n warnings as though the recording had it:\n\n parseHeader(bytes, 848.5) // \"0.5 bytes after the last complete data record were\n // ignored.\"\n parseHeader(bytes, 900.25) // \"The header declares 2 data records but the file\n // contains 3.\" — and \"12.25 bytes ... were ignored.\"\n\n Three quarters of a byte, reported as a fact about the file, under `TRAILING_BYTES` — the\n code a script matches to decide a recording was truncated. The paragraph above is about\n exactly this: \"Every count this function reports about the data comes out of `fileSize`.\"\n */\n if (typeof fileSize !== 'number' || !Number.isInteger(fileSize) || fileSize < 0) {\n throw new OptionError(\n `fileSize must be the number of bytes in the file, got ${describeValue(fileSize)}.`,\n );\n }\n\n const diagnostics: Diagnostic[] = [];\n const sawComma = { value: false };\n\n if (buf.length < FIXED_HEADER_BYTES) {\n /*\n Which of the two is actually short — the same question the FILE_TOO_SMALL fifty lines\n down was fixed for, in the words its comment still uses: \"The file size was quoted\n either way, so a caller that had read too little ... produced arithmetic that refuted\n itself.\" This is the raising that comment describes, and it went on doing it:\n\n parseHeader(new Uint8Array(100), 5000)\n File is 5,000 bytes; an EDF header alone needs at least 256.\n\n 5,000 is not less than 256. A reader following that sentence looks for a truncation\n that is not there, and the number they are given to check against the file is the one\n that is fine. Reached from the library, where the caller holds both — `EdfFile.open`\n reads 256 bytes before it reads anything else, so the two agree by construction there.\n */\n const short = fileSize < FIXED_HEADER_BYTES;\n throw new EdfError(\n 'FILE_TOO_SMALL',\n short\n ? `File is ${counted(fileSize, 'byte')}; an EDF header alone needs at least ${FIXED_HEADER_BYTES}.`\n : `An EDF header alone needs ${FIXED_HEADER_BYTES} bytes, but only ` +\n `${grouped(buf.length)} of this ${grouped(fileSize)}-byte file reached the parser.`,\n short\n ? 'A file this small is truncated, or is not an EDF or BDF recording at all: every one of ' +\n 'them opens with a fixed 256-byte header.'\n : 'parseHeader takes the header block and the size of the file it came out of. This ' +\n 'call was given fewer bytes than the header it was asked to read.',\n );\n }\n\n // BDF (BioSemi) marks itself with byte 255 followed by 'BIOSEMI', and stores\n // 3-byte samples instead of 2. Everything else about the layout is identical.\n const isBdf = buf[0] === 0xff && dec(buf, 1, 7) === 'BIOSEMI';\n const version = isBdf ? 'BIOSEMI' : trimField(dec(buf, 0, 8));\n\n const patientId = trimField(dec(buf, 8, 80));\n const recordingId = trimField(dec(buf, 88, 80));\n const startDateRaw = trimField(dec(buf, 168, 8));\n const startTimeRaw = trimField(dec(buf, 176, 8));\n const headerBytes = parseNumberField(dec(buf, 184, 8), 'number of header bytes', {\n integer: true,\n sawComma,\n });\n const reserved = trimField(dec(buf, 192, 44));\n const declaredRecordCount = parseNumberField(dec(buf, 236, 8), 'number of data records', {\n integer: true,\n sawComma,\n });\n const recordDuration = parseNumberField(dec(buf, 244, 8), 'duration of a data record', {\n sawComma,\n });\n const signalCount = parseNumberField(dec(buf, 252, 4), 'number of signals', {\n integer: true,\n sawComma,\n });\n\n if (signalCount <= 0) {\n throw new EdfError(\n 'INVALID_SIGNAL_COUNT',\n `Header declares ${counted(signalCount, 'signal')}; expected at least 1.`,\n BAD_FIELD_HINT,\n );\n }\n if (!(recordDuration > 0)) {\n throw new EdfError(\n 'INVALID_RECORD_DURATION',\n `Header declares a data record duration of ${plainSeconds(recordDuration)}s; expected a positive number.`,\n BAD_FIELD_HINT,\n );\n }\n\n const expectedHeaderBytes = FIXED_HEADER_BYTES + signalCount * SIGNAL_HEADER_BYTES;\n if (buf.length < expectedHeaderBytes) {\n throw new EdfError(\n 'FILE_TOO_SMALL',\n /*\n Which of the two is actually short.\n\n The file size was quoted either way, so a caller that had read too little — the\n signal count parsed one way here and another way there — produced arithmetic that\n refuted itself: \"needs a 768-byte header, but the file is only 848 bytes\". A reader\n following that looks for a truncation that is not there.\n */\n `File declares ${counted(signalCount, 'signal')}, which needs a ${grouped(expectedHeaderBytes)}-byte header, ` +\n (fileSize < expectedHeaderBytes\n ? `but the file is only ${grouped(fileSize)} bytes.`\n : `but only ${grouped(buf.length)} bytes of it were handed to the parser.`),\n 'Either the recording is truncated inside its own header, or the signal count was ' +\n 'read from bytes that are not it. Both leave the channel descriptions unfinished.',\n );\n }\n if (headerBytes !== expectedHeaderBytes) {\n diagnostics.push({\n code: 'HEADER_BYTES_MISMATCH',\n severity: 'warning',\n message:\n `Header says it is ${grouped(headerBytes)} bytes, but ${counted(signalCount, 'signal')} ` +\n `${signalCount === 1 ? 'requires' : 'require'} ${grouped(expectedHeaderBytes)} bytes. ` +\n `Using the value computed from the signal count.`,\n hint:\n 'Where the data starts is worked out from the signal count, not from this field, so ' +\n 'nothing is read from the wrong offset. A writer that got this one wrong may have ' +\n 'got others wrong too.',\n });\n }\n\n // Signal headers are field-major: all labels, then all transducers, and so on.\n const base = FIXED_HEADER_BYTES;\n const readField = (offsetUnits: number, width: number, i: number): string =>\n dec(buf, base + offsetUnits * signalCount + i * width, width);\n\n // EDF+ writes 'EDF+C'/'EDF+D' here; BDF+ writes 'BDF+C'/'BDF+D'. The two mean the\n // same thing, so both are normalised to a single continuity marker.\n const continuityTag = /^(?:EDF|BDF)\\+([CD])/u.exec(reserved);\n const continuity: 'EDF+C' | 'EDF+D' | null =\n continuityTag === null ? null : continuityTag[1] === 'D' ? 'EDF+D' : 'EDF+C';\n\n const signals: EdfSignal[] = [];\n let byteOffsetInRecord = 0;\n const bytesPerSample = isBdf ? 3 : 2;\n const seenLabels = new Map<string, number[]>();\n const emptyLabels: number[] = [];\n\n for (let i = 0; i < signalCount; i++) {\n const label = trimField(readField(0, 16, i));\n const transducer = trimField(readField(16, 80, i));\n const physicalDimension = trimField(readField(96, 8, i));\n const physicalMin = parseNumberField(readField(104, 8, i), `physical minimum (signal ${i})`, {\n sawComma,\n });\n const physicalMax = parseNumberField(readField(112, 8, i), `physical maximum (signal ${i})`, {\n sawComma,\n });\n const digitalMin = parseNumberField(readField(120, 8, i), `digital minimum (signal ${i})`, {\n integer: true,\n sawComma,\n });\n const digitalMax = parseNumberField(readField(128, 8, i), `digital maximum (signal ${i})`, {\n integer: true,\n sawComma,\n });\n const prefiltering = trimField(readField(136, 80, i));\n const samplesPerRecord = parseNumberField(\n readField(216, 8, i),\n `samples per record (signal ${i})`,\n { integer: true, sawComma },\n );\n const sigReserved = trimField(readField(224, 32, i));\n\n if (samplesPerRecord < 0) {\n throw new EdfError(\n 'BAD_HEADER_FIELD',\n `Signal ${i} (\"${label}\") declares ${samplesPerRecord} samples per record.`,\n BAD_FIELD_HINT,\n );\n }\n\n const isAnnotations = label === ANNOTATIONS_LABEL || label === BDF_ANNOTATIONS_LABEL;\n\n signals.push({\n index: i,\n label,\n transducer,\n physicalDimension,\n physicalMin,\n physicalMax,\n digitalMin,\n digitalMax,\n prefiltering,\n samplesPerRecord,\n reserved: sigReserved,\n isAnnotations,\n samplingRate: samplesPerRecord / recordDuration,\n byteOffsetInRecord,\n });\n byteOffsetInRecord += samplesPerRecord * bytesPerSample;\n\n if (!isAnnotations) {\n /*\n A label is free text out of the file, and it becomes a column name in signals.csv.\n\n `--info` has escaped control bytes since it was written, because an ANSI escape in a\n header can drive the reader's terminal — `\\x1b[2J` clears the screen. The CSV had no\n such protection and needed none for correctness: quoting makes any byte safe for a\n parser, and this still passes the label through exactly as the file gives it, because\n losing what the header says is not an improvement.\n\n What was missing is the sentence saying so. A recording whose channel is labelled\n `\\x1b[2Jgone` converted with no warning at all, and `cat signals.csv` then cleared\n the terminal — while a script referencing that column by name carried an invisible\n control character in it. NONPRINTABLE_LABEL has been declared and documented as\n reserved since 0.1; this is it doing its job.\n */\n /*\n Which of the two fields carries them, because the consequences are not the same.\n\n The message said \"label or unit\", and then said the bytes \"will appear in the CSV\n column name\" and that \"the name cannot be typed\" — both of which are about the label.\n A channel labelled plainly `ECG` in a unit of `u\\x07V` got all of it: its column is\n `ECG`, `--channels ECG` selects it and exits 0, and the byte is in channels.csv's\n `unit` cell, which the warning never mentioned. Three sentences, none of them true of\n the file that raised it, on a warning whose whole purpose is to say where an invisible\n byte went.\n */\n /*\n All four free-text fields, not the two that were checked.\n\n `transducer` and `prefiltering` are free text out of the header exactly as the label\n and the unit are, and they land in channels.csv exactly as the unit does — so an ESC\n byte in a transducer field reached the CSV raw with nothing said, and `cat\n channels.csv` would drive the terminal. That is the hazard this warning exists for,\n two columns over. 0.5.71 made it name which field carries them; this is the rest of\n the fields it can name.\n */\n const fields = [\n ['label', label],\n ['unit', physicalDimension],\n ['transducer', transducer],\n ['prefiltering', prefiltering],\n ] as const;\n const affected = fields.filter(([, text]) => [...text].some(isControlCharacter));\n const control = affected.flatMap(([, text]) => [...text].filter(isControlCharacter));\n if (control.length > 0) {\n /*\n How many of them get named is the header's decision, and it was unbounded.\n\n Every other enumeration whose length the file controls goes through `listed`, which\n is the helper written for exactly this — \"without letting the file decide how long\n the sentence gets\". This one joined the whole set. Four free-text fields of 16, 8, 80\n and 80 bytes can carry 63 distinct control codes between them, and did:\n\n warning: Signal 0's label, unit and transducer contain 63 control characters\n (\\x01, \\x02, \\x03, ... \\x9e), which will appear in the CSV column name and in\n channels.csv exactly as the header has them.\n\n 549 characters on one line, from a warning whose point is the short sentence around\n the list. The count is already in that sentence — \"63 control characters\" — so the\n tail the cut hides is the part the reader was told twice.\n */\n const shown = listed(\n [...new Set(control)].map(\n (c) => `\\\\x${(c.codePointAt(0) as number).toString(16).padStart(2, '0')}`,\n ),\n );\n const inLabel = affected.some(([name]) => name === 'label');\n // \"label and unit\", not \"label, unit\" — `listed` is for long enumerations that get\n // truncated, and this is a sentence with at most four items in it.\n const names = affected.map(([name]) => name);\n const named =\n names.length === 1\n ? (names[0] as string)\n : `${names.slice(0, -1).join(', ')} and ${names[names.length - 1] as string}`;\n // Where they land, which is the question the reader has. A label becomes a column\n // name in signals.csv; the other three are cells of channels.csv and nothing else.\n // Named down to the cell when there is one of them, because that is the answer to\n // \"where did it go\" — `channels.csv` alone leaves a reader scanning fourteen columns.\n /*\n And whether there is a channels.csv at all, which this took for granted.\n\n `--stdout` writes the signal table and nothing else — no channels.csv, no\n annotations.csv, no metadata.json. A control byte in a unit reaches no file at all\n in that mode, and this said it would be in a cell of one:\n\n $ edf2csv control-labels.edf --stdout | less\n warning: Signal 0's label and unit contain 2 control characters (\\x1b), which\n will appear in the CSV column name and in channels.csv's unit cell\n exactly as the header has them.\n ... Printing the CSV to a terminal may do more than print it.\n\n Which is the mode this warning matters most in: `--stdout` *is* printing the CSV to\n a terminal, and the hint two lines down says so. The header is parsed before any\n destination is chosen, so the sentence says what is true of both rather than\n guessing — the same reason the `DUPLICATE_LABEL` hint above names two layouts.\n */\n const cells = affected.filter(([name]) => name !== 'label').map(([name]) => name);\n const where =\n cells.length === 1\n ? `channels.csv's ${cells[0] as string} cell in any conversion that writes one`\n : 'the channels.csv of any conversion that writes one';\n /*\n \"The CSV column name\" is the wide layout's answer, given in both.\n\n A long signals.csv has three columns — time_s, channel, value — and a label is not\n one of them: it is a value in the `channel` column, once per row. So a control byte\n in a label reaches one cell of the header line under the default layout and every\n row of the table under `--layout long`, and the sentence naming where it went named\n only the first. Same fault 0.8.24 fixed for `DUPLICATE_LABEL`'s message and 0.8.43\n for its hint.\n\n The parser cannot know the layout, and unlike those two this sentence does not have\n room to name both — it already carries the field list, the byte list and where the\n cell fields land. \"The channel's name\" is what both layouts call it: the term the\n long layout's own warnings use, and what a column name is.\n */\n const lands =\n inLabel && cells.length > 0\n ? `which will appear as the channel's name in signals.csv and in ${where}`\n : inLabel\n ? \"which will appear as the channel's name in signals.csv\"\n : `which will appear in ${where}`;\n diagnostics.push({\n code: 'NONPRINTABLE_LABEL',\n severity: 'warning',\n message:\n `Signal ${i}'s ${named} ${affected.length === 1 ? 'contains' : 'contain'} ` +\n // A comma before the closing clause, which now has a clause of its own inside it.\n `${counted(control.length, 'control character')} (${shown}), ${lands}, exactly as the ` +\n `header has ${control.length === 1 ? 'it' : 'them'}.`,\n hint:\n /*\n Every branch has to print a command that works.\n\n The middle one quoted the label back, which is right until the label is empty:\n an unlabelled channel got `--channels \"\"`, and that exits 2 with \"--channels was\n given but lists no channel names\". A hint whose command fails is worse than no\n hint, and this warning's whole job is to say how to reach a channel whose header\n text you cannot type. `EMPTY_LABEL` already says the position is the only way in\n for such a channel; so does this now.\n\n A comma is the third way. `--channels` separates names with one, and splits on\n every occurrence, so a channel labelled `EEG Fpz-Cz, ref` cannot be selected by\n name at all: the quoted-back advice printed `--channels \"EEG Fpz-Cz, ref\"`, which\n exits 2 with `No channel named \"EEG Fpz-Cz\"` — a channel the file does not have,\n named after half of one it does. Commas in labels are ordinary, since EDF labels\n are free text, and the CSV header quotes them; only this one hint claimed\n something about them that isn't so.\n */\n /*\n And a fourth way, which this branch printed straight past.\n\n A shell expands `$`, a backtick and a backslash inside double quotes, so a\n channel labelled `EEG $ref` was answered with `--channels \"EEG $ref\"` — which\n arrives as `EEG ` and exits 2 on a channel the file does not have. A backtick\n opens a command substitution and the pasted line does not even finish. That is\n the failure 0.7.18 fixed for `--channels`' own suggestion, and `typeable` is the\n rule it fixed it with: double quotes where they survive, single quotes where\n they do not, null where nothing does. Asking it settles which branch this takes\n as well, so the two cannot disagree about one label again.\n */\n (typeable(label) === null\n ? `Address the channel by position with --channels \"#${i}\" rather than by name, ` +\n `since ${\n inLabel\n ? 'the name cannot be typed'\n : label === ''\n ? 'it has no label'\n : 'a comma in the label would read as two names'\n }. `\n : `The column name is unaffected, so --channels ${typeable(label) as string} still selects it. `) +\n 'Printing the CSV to a terminal may do more than print it.',\n });\n }\n\n /*\n Header text a spreadsheet will run rather than read.\n\n The same four free-text fields, asked a different question. `=`, `+` and `@` start a\n formula in Excel, LibreOffice and Sheets no matter which file the cell came from, and\n these fields land in a CSV header row and in channels.csv verbatim — so a channel\n labelled `=1+1` opens as a column headed 2, and `=HYPERLINK(...)` opens as a link\n nobody in the reading chain wrote. SECURITY.md already calls these fields\n attacker-controlled because they reach filenames; this is where they reach a program\n that executes text.\n\n Not `-`, which the same advice usually includes. A lone `-` is a real convention for\n \"no unit\" and appears in the fixtures, a leading `-` on a montage label is ordinary,\n and neither is executed unless what follows parses as a formula — so warning on it\n would fire on files that are fine, which is how a warning gets ignored.\n\n Said, not fixed. Prefixing the cell with a quote is the usual mitigation and would mean\n writing something the header does not say, which is the one thing this tool refuses to\n do; NONPRINTABLE_LABEL answers control bytes the same way.\n */\n const formulaic = fields.filter(([, text]) => startsFormula(text));\n if (formulaic.length > 0) {\n const names = formulaic.map(([name]) => name);\n const named =\n names.length === 1\n ? (names[0] as string)\n : `${names.slice(0, -1).join(', ')} and ${names[names.length - 1] as string}`;\n const shown = [...new Set(formulaic.map(([, text]) => text[0] as string))].join(', ');\n diagnostics.push({\n code: 'FORMULA_LABEL',\n severity: 'warning',\n message:\n `Signal ${i}'s ${named} ${formulaic.length === 1 ? 'starts' : 'start'} with ` +\n `${shown}, which Excel, LibreOffice and Google Sheets read as the start of a ` +\n `formula rather than as text.`,\n hint:\n 'The text is written exactly as the header has it, so the cell is what the ' +\n 'recording says. Open the CSV with pandas or R, or import it into the ' +\n 'spreadsheet as text, if you do not want it evaluated.',\n });\n }\n\n if (label === '') {\n // Collected, not reported here: what this channel's column ends up called depends on\n // whether some later channel is literally labelled `signal_<i>`, and inside this loop\n // the later channels do not exist yet. See the pass below.\n emptyLabels.push(i);\n } else {\n // Collected rather than reported here: a label repeated five times should\n // produce one warning naming all five, not four near-identical pairs.\n const seen = seenLabels.get(label);\n if (seen) seen.push(i);\n else seenLabels.set(label, [i]);\n }\n\n if (samplesPerRecord === 0) {\n diagnostics.push({\n code: 'NO_SAMPLES',\n severity: 'warning',\n message: `Signal ${i} (\"${label}\") carries no samples at all (0 per data record).`,\n hint: 'It is described in channels.csv but left out of the converted data.',\n });\n }\n\n /*\n Too large to represent, and too small — the second was silent.\n\n The gain is the span divided by the digital range, and a span of 2e-320 over 65,535\n codes is 3e-325: below the smallest subnormal double, so it underflows to +0. The\n scaler's flat-range branch then handed every code the same physical value, and a\n channel of 65,536 distinct readings became one repeated number with nothing raised at\n all. One power of ten away, at 1e-319, the same file raises VALUE_RESOLUTION.\n\n Both are the same fact about the header — the span cannot be turned into a mapping —\n so both get this code, and both leave the cells empty rather than filling them with a\n value the header cannot justify.\n */\n const span = physicalMax - physicalMin;\n const underflowed = span !== 0 && span / (digitalMax - digitalMin) === 0;\n if (!Number.isFinite(span) || underflowed) {\n diagnostics.push({\n code: 'UNUSABLE_PHYSICAL_RANGE',\n severity: 'warning',\n message:\n `Signal ${i} (\"${label}\") declares a physical range from ${physicalMin} to ` +\n `${physicalMax}, whose span is too ${underflowed ? 'small' : 'large'} to ` +\n `represent, so its values cannot be scaled.`,\n hint: 'Its cells are left empty rather than filled with a value the header cannot justify.',\n });\n } else if (digitalMax === digitalMin) {\n diagnostics.push({\n code: 'DEGENERATE_DIGITAL_RANGE',\n severity: 'warning',\n message:\n `Signal ${i} (\"${label}\") has digital minimum equal to digital maximum ` +\n `(${digitalMin}), so its values cannot be scaled.`,\n hint: 'Its cells are left empty rather than filled with a value the header cannot justify.',\n });\n } else if (physicalMax === physicalMin) {\n diagnostics.push({\n code: 'DEGENERATE_PHYSICAL_RANGE',\n severity: 'warning',\n message:\n `Signal ${i} (\"${label}\") has physical minimum equal to physical maximum ` +\n `(${physicalMin}), so every sample converts to the same value.`,\n /*\n The one branch of the four that fills the cells, and the only one that said\n nothing about them.\n\n Its three neighbours all end \"Its cells are left empty rather than filled with a\n value the header cannot justify\", which is the opposite of what happens here: the\n mapping is defined — it has one point in it — so `physicalMin` is written into\n every cell, and a reader who had learned the family's answer from the branch above\n gets it backwards. A column of one repeated number is also the shape a genuinely\n flat recording takes, which is the confusion worth heading off.\n */\n hint:\n 'Its cells carry that value rather than being left empty, since the mapping is ' +\n 'defined — it just has one point in it. The distinct digital codes behind them ' +\n 'are not recoverable from the CSV.',\n });\n } else if ((physicalMax - physicalMin) * (digitalMax - digitalMin) < 0) {\n /*\n Polarity is inverted when the gain is negative, and the gain is\n (physicalMax - physicalMin) / (digitalMax - digitalMin) — so it is the sign of the\n two spans together that matters, not the physical pair alone.\n\n Testing only `physicalMax < physicalMin` was wrong in both directions. A file with\n its DIGITAL bounds reversed is just as inverted and drew no warning at all, handing\n back sign-flipped EEG with nothing to indicate it. A file with BOTH pairs reversed\n has a positive gain and is not inverted, yet was warned about — a message that was\n simply untrue of that recording.\n */\n const reversed =\n physicalMax < physicalMin\n ? `physical minimum ${physicalMin} above physical maximum ${physicalMax}`\n : `digital minimum ${digitalMin} above digital maximum ${digitalMax}`;\n diagnostics.push({\n code: 'INVERTED_PHYSICAL_RANGE',\n severity: 'warning',\n message: `Signal ${i} (\"${label}\") declares ${reversed}, which inverts its polarity.`,\n hint: 'The values are converted exactly as the header specifies, inversion included.',\n });\n }\n }\n }\n\n /*\n What an unlabelled channel is actually called, which the message used to guess.\n\n A channel with no label takes `signal_<index>` — unless another channel is literally\n labelled that, which EDF permits, since labels are free text and nothing enforces anything\n about them. Then both collide and both are suffixed. The warning said \"It will appear as\n \"signal_0\"\" while the file's header read `time_s,signal_0_ch0,signal_0_ch1`: the one\n sentence the run printed named a column that exists in neither signals.csv nor\n channels.csv.\n\n The other half was silent. The channel that genuinely carries the label `signal_0` lost\n its own column name to a collision with a synthesised one, and nothing said so —\n DUPLICATE_LABEL did not fire, because the two labels are not the same label. Both halves\n are one sentence here, because they are one event.\n\n No specific suffixed name is quoted. The suffix rule has a second pass for names that are\n still shared afterwards, and a message that hard-coded `_ch<index>` would be guessing again\n in exactly the way this is fixing.\n */\n for (const index of emptyLabels) {\n const taken = seenLabels.get(`signal_${index}`);\n diagnostics.push({\n code: 'EMPTY_LABEL',\n severity: 'warning',\n message:\n taken === undefined\n ? `Signal ${index} has no label. It will appear as \"signal_${index}\".`\n : `Signal ${index} has no label, so it takes the name \"signal_${index}\" — which ` +\n `${taken.length === 1 ? 'signal' : 'signals'} ${listed(taken.map(String))} already ` +\n `${taken.length === 1 ? 'carries' : 'carry'} as a label, so both columns are ` +\n `suffixed with their position instead.`,\n /*\n The position, not the word \"position\".\n\n A hint that offers a command has to offer one that can be typed — 0.7.18 and 0.7.19\n went through the others making sure each one could be pasted, and NONPRINTABLE_LABEL\n two hundred lines up writes `--channels \"#${i}\"` with the number in it. This one said\n `--channels \"#<position>\"` while the sentence above it began \"Signal 0\", so the\n reader was asked to carry a number across from the message and put it in themselves.\n */\n hint:\n 'The name is built from the position rather than read from the header, so it moves ' +\n `if the file's channels do. Select the channel as --channels \"#${index}\" to say ` +\n 'which one you mean without depending on it.',\n });\n }\n\n /*\n A timestamp that is not one.\n\n EDF gives the start date and time eight characters each, and nothing stops a writer\n putting `32.13.99` and `25.61.61` there. `--info` has always echoed the raw fields with\n \"(unparseable)\" beside them, but nothing was raised: the conversion exited 0, `--strict`\n passed, and metadata.json recorded `start_datetime_local: null` with no note against it.\n\n Every other unusable header field reports itself — a degenerate digital range, a physical\n span that cannot be represented, a comma decimal separator, a header whose declared size\n disagrees with its signal count. This was the one that did not, and it is the field\n output-files points at for turning `time_s` into an absolute instant.\n */\n /*\n The sixtieth second, which is a second UTC has and a calendar date does not.\n\n `resolveStartDateTime` admits `ss === 60` on purpose — a recorder synchronised to UTC\n through a leap second writes `23.59.60`, and refusing it would throw away a date that is\n otherwise perfectly good over one second. What it then does is `Math.min(ss, 59)`, because\n `Date.UTC(..., 60)` rolls over into the next minute and would move the instant the other\n way, by fifty-nine seconds more.\n\n Keeping the nearest instant is the right answer. Keeping it in silence was not: `--info`\n printed `Recorded 2020-01-01 23:59:59` and metadata.json recorded the same, for a header\n that says `23.59.60`, with `--strict` exiting 0. Every other header field this tool cannot\n represent exactly says so — a comma decimal separator, a physical span that overflows, a\n record count that disagrees with the file — and this is the field `time_s` is documented as\n being added to.\n */\n if (\n namesLeapSecond(startTimeRaw) &&\n resolveStartDateTime(startDateRaw, startTimeRaw, recordingId) !== null\n ) {\n diagnostics.push({\n code: 'LEAP_SECOND_START',\n severity: 'warning',\n message:\n `The header's start time (\"${startTimeRaw}\") names the sixtieth second of a minute, ` +\n `which no calendar date has.`,\n hint:\n 'It is recorded as the fifty-ninth second, one second earlier, since that is the ' +\n 'nearest instant a date can hold. time_s is unaffected — it counts from the start of ' +\n 'the recording either way.',\n });\n }\n\n /*\n Two dates in one header, disagreeing.\n\n EDF+ requires the recording identification field's `Startdate` to be the header's start\n date. Where it is, its four digits settle the century — see resolveStartDateTime. Where it\n is not, one of the two is wrong and there is no way to tell which, so the date field is\n used, being the one the format defines. That was done in silence, on a header that plainly\n contradicts itself:\n\n Recorded 2002-03-02 22:15:00\n Recording Startdate 05-MAR-2002 PSG-1234/2002 NN Telemetry03\n\n The same shape as a record count that disagrees with the file, or a declared header size\n that disagrees with the signal count, both of which have said so for versions.\n */\n const statedDate = recordingIdStartdate(recordingId);\n const headerDate = /^(\\d{2})[.\\-/](\\d{2})[.\\-/](\\d{2})$/u.exec(trimField(startDateRaw));\n if (statedDate !== null && headerDate !== null) {\n const day = Number(headerDate[1]);\n const month = Number(headerDate[2]);\n const yy = Number(headerDate[3]);\n if (statedDate.day !== day || statedDate.month !== month || statedDate.year % 100 !== yy) {\n diagnostics.push({\n code: 'START_DATE_MISMATCH',\n severity: 'warning',\n message:\n `The header's start date (\"${startDateRaw}\") and the date its recording ` +\n `identification states (\"${String(statedDate.day).padStart(2, '0')}-` +\n `${MONTHS[statedDate.month - 1] as string}-${statedDate.year}\") are different ` +\n `dates, which EDF+ does not permit.`,\n hint:\n 'The start date field is used, since that is the one the format defines. Which of ' +\n 'the two is right is not knowable from the file, so start_datetime_local may name ' +\n 'the wrong day.',\n });\n }\n }\n\n if (resolveStartDateTime(startDateRaw, startTimeRaw, recordingId) === null) {\n diagnostics.push({\n code: 'START_TIME_UNREADABLE',\n severity: 'warning',\n message:\n `The header's start date and time (\"${startDateRaw}\" and ` +\n `\"${startTimeRaw}\") are not a date and a time, so the recording has ` +\n `no start instant.`,\n hint:\n 'time_s is unaffected — it counts from the start of the recording either way. What ' +\n 'cannot be done is turning it into a wall-clock instant, and metadata.json records ' +\n 'start_datetime_local as null.',\n });\n }\n\n for (const [label, indices] of seenLabels) {\n if (indices.length < 2) continue;\n diagnostics.push({\n code: 'DUPLICATE_LABEL',\n severity: 'warning',\n /*\n Cut by the function that cuts every other list in a sentence here.\n\n `join` names all of them, however many there are, and a header may declare as many\n channels as it likes under one label: a 200-channel montage all labelled `T8-P8` — which\n is exactly the kind of file this warning is for, since CHB-MIT ships two of them —\n produced a single 1,100-character line of positions with the sentence that mattered at\n the front of it. `listed` shows eight and counts the rest, which is what the rate\n warning, the leftover-file warning, the channel-position lists in `--channels` and the\n `EMPTY_LABEL` message one loop up all already do. This was the last `join` of a\n file-controlled list left in a diagnostic.\n\n Two positions render identically either way, so the ordinary duplicate reads as it\n always has.\n */\n /*\n Positions written `#N`, which is how a position is written everywhere it is meant to be\n typed: `--channels \"#0\"`, \"This file has signal channels at #0, #1, #2\", and this\n warning's own namesake from channel selection — \"(positions #0, #1); all of them were\n selected\". This one said \"(positions 0, 1)\", two paragraphs above the page that tells\n the reader to \"address it by position with #N\". The number is the same; the form that\n works is not.\n */\n message:\n `${counted(indices.length, 'signal')} share the label \"${label}\" ` +\n `(positions ${listed(indices.map((i) => `#${i}`))}).`,\n /*\n A sentence about the wide layout, printed in both — the same fault 0.8.24 fixed for\n the other raiser of this code, two lines further down the same run.\n\n A long signals.csv has three columns, `time_s`, `channel` and `value`, and none of\n them comes from a label: a channel appears there as a value in the `channel` column.\n `label-suffix-collision.edf --layout long` printed both halves back to back:\n\n warning: 2 signals share the label \"T8\" (positions #0, #1).\n Their columns are suffixed with the signal number so they stay\n distinguishable.\n warning: Signal 2 is labelled \"T8_ch0\", ... so it is named \"T8_ch0_ch2\" in the\n channel column.\n Channel names are unique; look this channel up in channels.csv by its\n signal_index.\n\n The plan raises the second and knows the layout. The header raises this one and\n cannot: it is parsed before any conversion is planned, and `EdfFile.open` hands these\n diagnostics to callers who have asked for no layout at all. So the sentence names\n both, rather than guessing which one is being written.\n */\n hint:\n 'Their names are suffixed with the signal number so they stay distinguishable: a ' +\n 'column name each in the wide layout, and a distinct value in the channel column ' +\n 'under --layout long.',\n });\n }\n\n const recordBytes = byteOffsetInRecord;\n if (recordBytes <= 0) {\n throw new EdfError(\n 'NO_SAMPLES',\n 'No signal in this file carries any samples (every channel declares 0 samples per record).',\n 'The header describes the channels and nothing has data behind them, so there is no ' +\n 'record to read. A header written before recording began, or copied from another ' +\n 'file, produces this.',\n );\n }\n\n if (sawComma.value) {\n diagnostics.push({\n code: 'COMMA_DECIMAL',\n severity: 'warning',\n message: 'Some header numbers use a comma decimal separator, which the EDF spec does not allow.',\n hint: 'They were read as decimal points. Check the values in the channel table.',\n });\n }\n\n const dataBytes = fileSize - expectedHeaderBytes;\n if (dataBytes < 0) {\n // With the two figures, like the other two FILE_TOO_SMALL messages and unlike this one,\n // which named neither — the same thing the NO_DATA_RECORDS message below was fixed for:\n // \"the message carried no figures at all, so nothing in it could be checked against the\n // file\". Reached by a caller handing `parseHeader` a header and a smaller size than the\n // one it came out of, which is a mismatch worth being able to see.\n throw new EdfError(\n 'FILE_TOO_SMALL',\n `File is ${counted(fileSize, 'byte')}, which is less than the ${grouped(expectedHeaderBytes)} ` +\n `its own header occupies.`,\n 'The header and the size came from different reads: parseHeader was handed a byte ' +\n 'count smaller than the header block it was given.',\n );\n }\n const recordCount = Math.floor(dataBytes / recordBytes);\n const trailingBytes = dataBytes - recordCount * recordBytes;\n\n if (recordCount === 0) {\n /*\n Which of the two, and with the numbers.\n\n \"The recording was probably interrupted before any data was written\" is right about an\n empty file and wrong about the other way to get here: a header declaring records larger\n than the data present. A 606 KB file holding 589 KB of samples — 60% of one record, more\n than half a million readings — was told no data was written, and the message carried no\n figures at all, so nothing in it could be checked against the file. The declared record\n size is the thing to look at, and it was the one thing not said.\n\n Still an error either way. A record is the unit the format is addressed in, and there is\n nothing smaller to convert.\n */\n const empty = dataBytes === 0;\n throw new EdfError(\n 'NO_DATA_RECORDS',\n empty\n ? 'The file contains a header and no data at all.'\n : `The file contains ${counted(dataBytes, 'byte')} of data, which is less than the ` +\n `${grouped(recordBytes)} its header says one data record takes.`,\n empty\n ? 'The recording was probably interrupted before any data was written.'\n : 'Either the recording was cut short part way through its first record, or the ' +\n 'header describes records larger than the ones actually written. Check the ' +\n 'samples-per-record fields against the file size.',\n );\n }\n\n if (declaredRecordCount === -1) {\n diagnostics.push({\n code: 'RECORD_COUNT_UNKNOWN',\n severity: 'warning',\n message:\n `The header does not say how many data records the file has (-1), which the spec allows ` +\n `for recordings still in progress. Using the ${counted(recordCount, 'record')} the file actually contains.`,\n hint:\n 'That count comes from the size of the file, so a recording still being written ' +\n 'converts as much of it as was on disk when this run read it.',\n });\n } else if (declaredRecordCount !== recordCount) {\n diagnostics.push({\n code: 'RECORD_COUNT_MISMATCH',\n severity: 'warning',\n // Both counts through `counted`, not only the second. A header declaring one record\n // over a file holding three read \"declares 1 data records\" — the slip the sentence\n // beside it has been holding to since it was written.\n message:\n `The header declares ${counted(declaredRecordCount, 'data record')} but the file ` +\n `contains ${grouped(recordCount)}. Only the ${counted(recordCount, 'record')} that ` +\n `${recordCount === 1 ? 'is' : 'are'} present can be converted.`,\n hint:\n declaredRecordCount > recordCount\n ? 'The recording looks truncated. It may have been cut short or copied incompletely.'\n : 'The file is longer than its header claims.',\n });\n }\n\n if (trailingBytes > 0) {\n diagnostics.push({\n code: 'TRAILING_BYTES',\n severity: 'warning',\n message: `${counted(trailingBytes, 'byte')} after the last complete data record ${trailingBytes === 1 ? 'was' : 'were'} ignored.`,\n hint:\n 'A record is the unit this format is addressed in, and a partial one says nothing ' +\n 'about which samples it holds or when they were taken. Every complete record was ' +\n 'converted.',\n });\n }\n\n const isEdfPlus = continuity !== null;\n if (continuity === 'EDF+D') {\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n /*\n What the marker says, which is all this function has.\n\n The sentence asserted a fact about the records — \"its data records are not contiguous\n in time\" — from a header field, one record's worth of which this has not read. An\n EDF+D file whose records happen to sit end to end is unusual and perfectly legal, and\n the rest of the report already knows: `--info` prints the `Time span` line only when\n the span and the duration differ, so on such a file it stays silent and this warning\n three lines below it says the opposite.\n\n The marker is what is worth reporting, and it is what the continuous twin of this\n warning reports — \"This file is marked continuous (EDF+C), but 1 of its 3 data records\n says it starts somewhere other than where continuity puts it\": the field first, the\n evidence after, raised where the evidence is. `withTimingPromiseKept` already withdraws\n this warning's hint for the same reason, in the same place, and left the sentence above\n it making a claim of its own.\n */\n message:\n `This recording is marked discontinuous (${isBdf ? 'BDF+D' : 'EDF+D'}): its data ` +\n `records need not be contiguous in time.`,\n hint: 'Each row carries its true recording time, so gaps stay visible instead of being closed.',\n });\n }\n\n const dataSignals = signals.filter((s) => !s.isAnnotations);\n if (dataSignals.length === 0) {\n diagnostics.push({\n code: 'NO_SIGNAL_CHANNELS',\n severity: 'warning',\n /*\n The marker as the file spells it, which is what the DISCONTINUOUS warning ten lines up\n already does and what `describeFormat` was fixed for.\n\n A BDF+ recording holding nothing but its `BDF Annotations` channel — a label this\n parser recognises by name, beside `EDF Annotations`, and has since annotations were\n read at all — was told it \"contains only EDF+ annotations\", naming a channel it does\n not carry and a format it is not. `--info` two lines above says `BDF+ (continuous)`\n and the channel table names the channel; this warning was the one line disagreeing\n with both.\n */\n message: `This file has no signal channels; it contains only ${isBdf ? 'BDF+' : 'EDF+'} annotations.`,\n /*\n What the file is, not what the run will write. The warning underneath it — raised by\n the conversion rather than by the parser — already answers the second question, in\n those words: \"annotations.csv holds whatever events it carries. channels.csv lists\n signal channels, so it has none to list.\" Two consecutive hints saying that would be\n worse than the one that was missing.\n */\n hint:\n `An ${isBdf ? 'BDF+' : 'EDF+'} file of events and no signal is an ordinary thing: a ` +\n 'scoring file distributed beside the recording it annotates has exactly this shape.',\n });\n }\n\n // A channel declaring zero samples per record has no sampling rate to speak of — it is\n // reported separately as NO_SAMPLES and no file is written for it. Counting its nominal\n // 0 Hz as a rate made a single-rate recording warn that it used \"2 different sampling\n // rates (4 Hz, 0 Hz)\" and claim it was splitting output it never split.\n const rates = new Set(dataSignals.filter((s) => s.samplesPerRecord > 0).map((s) => s.samplingRate));\n if (rates.size > 1) {\n diagnostics.push({\n code: 'MIXED_SAMPLING_RATES',\n severity: 'warning',\n message:\n `Channels use ${counted(rates.size, 'different sampling rate')} ` +\n `(${listed(formatRates([...rates].sort((a, b) => b - a)).map((r) => `${r} Hz`))}).`,\n hint: 'They are written to one file per rate so no channel is resampled.',\n });\n }\n\n return {\n header: {\n version,\n patientId,\n recordingId,\n startDateRaw,\n startTimeRaw,\n startDateTime: resolveStartDateTime(startDateRaw, startTimeRaw, recordingId),\n headerBytes: expectedHeaderBytes,\n declaredHeaderBytes: headerBytes,\n reserved,\n isEdfPlus,\n isBdf,\n continuity,\n declaredRecordCount,\n recordDuration,\n signalCount,\n signals,\n bytesPerSample,\n recordBytes,\n },\n recordCount,\n trailingBytes,\n diagnostics,\n };\n}\n\n/**\n * The recording start as a zone-less wall clock, \"YYYY-MM-DDTHH:MM:SS\".\n *\n * EDF stores the start time as local wall-clock digits with no timezone anywhere in\n * the format. `startDateTime` is built with Date.UTC purely so those digits survive a\n * round trip unshifted, which makes it a carrier for the wall clock rather than a\n * real instant. Serialising it with `toISOString()` would append a Z and assert UTC,\n * and any reader converting to local time would then shift the recording by their own\n * offset: 13:43:04 in the file becomes 08:43:04 in New York. The Z is omitted because\n * the file genuinely does not say which zone it meant.\n */\nexport function formatWallClock(date: Date | null): string | null {\n /*\n `null` is the answer for a recording with no start instant. It was also the answer for\n every other falsy value, because this line used to read `if (!date) return null` and ran\n before the check below.\n\n formatWallClock(0) // null\n formatWallClock(new Date(0)) // \"1970-01-01T00:00:00\"\n\n A millisecond timestamp is the obvious thing to hold beside a `Date` and the obvious thing\n to pass by mistake, and `0` is the epoch — a real instant, answered with the sentence this\n tool uses for a recording whose header has no readable date. `''`, `false` and `NaN` went\n the same way, while a truthy non-Date was refused properly. 0.8.63 gave this function its\n check; the short-circuit above it meant half the values never reached it.\n */\n if (date === null) return null;\n if (!(date instanceof Date)) {\n throw new OptionError(`date must be a Date or null, got ${describeValue(date)}.`);\n }\n /*\n And an unparseable one, which is a date this cannot state rather than a bad argument.\n\n `new Date('the third').toISOString()` is a `RangeError: Invalid time value` out of the\n middle of this function. `null` is what this returns for a recording with no start\n instant, and that is what an invalid Date is: `START_TIME_UNREADABLE` says the same thing\n about the same fact, and metadata.json writes `start_datetime_local: null` for it.\n */\n if (Number.isNaN(date.getTime())) return null;\n return date.toISOString().slice(0, 19);\n}\n\n/**\n * The recording's format, as `--info`, `metadata.json` and `--json` all name it.\n *\n * `\"EDF\"`, `\"BDF\"`, or one of `\"EDF+ (continuous)\"`, `\"EDF+ (discontinuous)\"`,\n * `\"BDF+ (continuous)\"`, `\"BDF+ (discontinuous)\"`. A BDF+ file reports its own spelling even\n * though `continuity` normalises the marker to the `EDF+` form.\n *\n * This said `EDF+ (EDF+D)` and `BDF+ (EDF+C)`, which are not strings it can return — the\n * parenthetical is the word, not the marker. It is a one-line doc comment on a public export,\n * so it is what a TypeScript consumer's editor shows and what `dist/edf/header.d.ts` ships,\n * and the value it describes is `recording.format` in every metadata.json this tool writes.\n * A consumer branching on the tooltip's spelling never matches. Every documentation page had\n * it right; this was the only place that did not.\n */\nexport function describeFormat(header: EdfHeader): string {\n /*\n The argument, which this read two booleans off and asked no questions about.\n\n Both reads are truthiness tests, so anything without them answers `'EDF'` — including the\n `EdfFile` whose `.header` this wants, which is one property away and is how the api page\n writes every other call. `describeFormat(file)` on a discontinuous BDF+ recording returned\n `'EDF'`: not an error, not a fallback, a confident wrong answer about the file in hand.\n\n The same check `makeScaler` got in 0.8.61, for the same reason — an exported function that\n reads fields off an object cannot tell a header from anything else that lacks them.\n */\n if (\n typeof header !== 'object' ||\n header === null ||\n typeof header.isBdf !== 'boolean' ||\n typeof header.isEdfPlus !== 'boolean'\n ) {\n throw new OptionError(`header must be a parsed EDF header, got ${describeValue(header)}.`);\n }\n const base = header.isBdf ? 'BDF' : 'EDF';\n if (!header.isEdfPlus) return base;\n /*\n The third field this reads, which the check above does not ask about.\n\n It decides the word in the parentheses, and the line below treats anything that is not\n `'EDF+D'` as continuous — missing included. So an object carrying the two booleans and\n nothing else came back `\"EDF+ (continuous)\"`: a confident wrong answer about a file,\n which is what that check was added to stop, for the one field it left out.\n\n A parsed header cannot be in this state: `isEdfPlus` *is* `continuity !== null`, so when\n the first is true the second is one of the two markers. Anything else reaching here is\n the argument being the wrong object again.\n */\n if (header.continuity !== 'EDF+C' && header.continuity !== 'EDF+D') {\n throw new OptionError(\n `header.continuity must be \"EDF+C\" or \"EDF+D\" on an EDF+ header, got ` +\n `${describeValue(header.continuity)}. It is what the word in the parentheses reports.`,\n );\n }\n return `${base}+ (${header.continuity === 'EDF+D' ? 'discontinuous' : 'continuous'})`;\n}\n\n/** Render a sampling rate without trailing noise: 256, 0.5, 12.5. */\nexport function formatRate(hz: number): string {\n // A number, like the neighbours. `formatRate(NaN)` came back as the string \"NaN\", and\n // `rateSlug` turned it into \"NaNhz\" — a file name this tool cannot write, handed to a\n // caller the doc comment below describes as \"reaching for the exported slug function to\n // predict a filename\". A rate that is not a number is not a rate.\n /*\n And a negative one, which 0.8.63 left in for the same reason it took NaN out.\n `rateSlug(-1)` answered `-1hz`, so `signals_-1hz.csv` — another name this tool cannot\n write, from the same caller asking the same question.\n\n Nor can a recording produce one to ask about: a rate is a channel's samples per record\n over the record duration, the parser refuses a record duration that is not positive, and\n it refuses a negative sample count outright — \"Signal 0 declares -1 samples per record\".\n Zero and Infinity are left alone, because both are rates a header really can state.\n */\n if (typeof hz !== 'number' || Number.isNaN(hz) || hz < 0) {\n throw new OptionError(`hz must be a sampling rate in hertz, got ${describeValue(hz)}.`);\n }\n if (Number.isInteger(hz)) {\n /*\n The same six decimals, in the notation `toFixed` cannot reach.\n\n Every double past 2^53 is an integer, so this branch takes every large rate — and\n `String` switches to exponent form at 1e21 and carries the full seventeen digits with\n it. Four samples in a record of 1e-300s is 3.9999999999999996e+300, which is exactly the\n float noise the rounding below exists to remove, printed in a `RATE` column of otherwise\n plain numbers and pasted into an output filename by `rateSlug`. Below 1e21 `String` is\n already exact and is left alone, so an integer rate a file can really state — 2^53\n samples in a second — is not rounded to something it is not.\n */\n const text = String(hz);\n return text.includes('e') ? String(Number(hz.toExponential(6))) : text;\n }\n const rounded = Number(hz.toFixed(6));\n // A rate below 5e-7 rounds away to \"0\", which reads as \"this channel has no sampling\n // rate\" and made the mixed-rate warning contradict itself: it announced two different\n // rates and then printed both as \"0 Hz\". Exponent form keeps a real rate legible, and\n // keeps distinct rates distinct in the channel table and in output filenames.\n if (rounded === 0) return hz.toExponential(3);\n return String(rounded);\n}\n\n/**\n * Renders a group of rates so that rates which differ read as differing.\n *\n * `formatRate` rounds to six decimals, which is what keeps an ordinary rate free of\n * float noise — 30 samples in a 0.1-second record is 299.99999999999994 as a double,\n * and belongs on screen as 300. Two rates separated by less than that round to one\n * string, so a file carrying 1e-6 Hz and 1.25e-6 Hz warned that it used \"2 different\n * sampling rates (0.000001 Hz, 0.000001 Hz)\" and named both files the same thing.\n *\n * That is the contradiction the exponent fallback above already removes for rates that\n * round away to zero; this is the same one a step further out. On a collision every rate\n * in the group switches to its shortest exact form, which is unique for distinct values,\n * rather than only the pair that collided — one column in one notation reads better than\n * two.\n */\nexport function formatRates(rates: readonly number[]): string[] {\n // `rates.map` on anything else is a TypeError naming a local of this package; the members\n // are `formatRate`'s business, one line down.\n if (!Array.isArray(rates)) {\n throw new OptionError(`rates must be a list of sampling rates, got ${describeValue(rates)}.`);\n }\n const rounded = rates.map(formatRate);\n const distinct = new Set(rates).size;\n return new Set(rounded).size === distinct ? rounded : rates.map((hz) => String(hz));\n}\n"]}
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* EDF / EDF+ header parsing.\n *\n * Layout (all fields are ASCII, left-justified, space-padded):\n *\n * fixed header, 256 bytes\n * 0 8 version ('0', or 255 + 'BIOSEMI' for BDF)\n * 8 80 patient identification\n * 88 80 recording identification\n * 168 8 start date dd.mm.yy\n * 176 8 start time hh.mm.ss\n * 184 8 number of bytes in the header record\n * 192 44 reserved ('EDF+C' / 'EDF+D' live here)\n * 236 8 number of data records (-1 if unknown)\n * 244 8 duration of a data record, in seconds (may be fractional)\n * 252 4 number of signals (ns)\n *\n * signal header, ns * 256 bytes, stored FIELD-major rather than signal-major:\n * all ns labels, then all ns transducer types, and so on.\n * ns * 16 label\n * ns * 80 transducer type\n * ns * 8 physical dimension\n * ns * 8 physical minimum\n * ns * 8 physical maximum\n * ns * 8 digital minimum\n * ns * 8 digital maximum\n * ns * 80 prefiltering\n * ns * 8 number of samples in each data record\n * ns * 32 reserved\n */\n\nimport { EdfError } from './errors.js';\nimport type { Diagnostic } from './errors.js';\nimport { counted, grouped, listed } from '../format/list.js';\nimport { plainSeconds } from '../format/number.js';\n// The shell-quoting rule for a label, shared rather than repeated: this hint and\n// `--channels`' own \"did you mean\" have to print the same command for the same label.\nimport { typeable } from '../convert/channels.js';\nimport { OptionError, describeValue } from '../convert/options.js';\nimport { decodeLatin1 } from './bytes.js';\n\n/** Label the EDF+ spec reserves for the annotations channel. */\nexport const ANNOTATIONS_LABEL = 'EDF Annotations';\n/** BDF+ uses its own spelling for the same channel. */\nexport const BDF_ANNOTATIONS_LABEL = 'BDF Annotations';\n\nexport const FIXED_HEADER_BYTES = 256;\nexport const SIGNAL_HEADER_BYTES = 256;\n\nexport interface EdfSignal {\n /** Position in the file, 0-based. Stable even when labels collide. */\n index: number;\n label: string;\n transducer: string;\n physicalDimension: string;\n physicalMin: number;\n physicalMax: number;\n digitalMin: number;\n digitalMax: number;\n prefiltering: string;\n samplesPerRecord: number;\n reserved: string;\n /** True for the EDF+ 'EDF Annotations' channel, which carries text, not signal. */\n isAnnotations: boolean;\n /** samplesPerRecord / recordDuration, in Hz. */\n samplingRate: number;\n /** Byte offset of this signal's samples within one data record. */\n byteOffsetInRecord: number;\n}\n\nexport interface EdfHeader {\n version: string;\n patientId: string;\n recordingId: string;\n /** Raw 'dd.mm.yy' as written in the file. */\n startDateRaw: string;\n /** Raw 'hh.mm.ss' as written in the file. */\n startTimeRaw: string;\n /** Resolved start instant, or null when the file's date/time fields are unusable. */\n startDateTime: Date | null;\n /**\n * Header size in bytes, computed from the signal count rather than read from the field.\n *\n * Every data record offset is derived from this, so it has to be the one the layout\n * actually uses: 256 for the fixed header plus 256 per signal. A writer that fills the\n * field in carelessly is common enough to have its own warning, HEADER_BYTES_MISMATCH,\n * and trusting the field over the arithmetic would put every sample at the wrong offset.\n */\n headerBytes: number;\n /**\n * What the header's own length field says, which need not be the above.\n *\n * Exposed for the same reason `declaredRecordCount` is: the two disagreeing is a fact\n * about the file, and a caller checking how a recording was written should be able to see\n * what it claimed rather than only what was believed.\n */\n declaredHeaderBytes: number;\n reserved: string;\n isEdfPlus: boolean;\n /** True for BioSemi BDF/BDF+ files, whose samples are 3 bytes rather than 2. */\n isBdf: boolean;\n /** 'EDF+C' continuous, 'EDF+D' discontinuous, or null for plain EDF. */\n continuity: 'EDF+C' | 'EDF+D' | null;\n /** As declared in the header. -1 means \"unknown\", which the spec permits. */\n declaredRecordCount: number;\n recordDuration: number;\n signalCount: number;\n signals: EdfSignal[];\n bytesPerSample: number;\n recordBytes: number;\n}\n\n/** Everything derived by combining the header with the file's real size. */\nexport interface EdfHeaderInfo {\n header: EdfHeader;\n /** Record count implied by the actual file size — the one we trust for reading. */\n recordCount: number;\n /** Bytes after the last complete data record. */\n trailingBytes: number;\n diagnostics: Diagnostic[];\n}\n\n/**\n * Whether a spreadsheet reads this field as the start of a formula rather than as text.\n *\n * `=` and `@` unconditionally; every list of these characters names two more, and this had\n * `-` as an exception with the reason written out on the warnings page: \"a lone `-` is a\n * real convention for no unit ... and neither is evaluated unless what follows it parses as a\n * formula\". Which is the condition, and it was not being applied — nothing with a leading\n * minus was flagged at all. A channel labelled `-2+3` opens as a column headed `1`, and\n * `-HYPERLINK(\"http://...\",\"EEG\")` is a name the spreadsheet resolves, in silence.\n *\n * So the exception is what it says it is rather than the whole character. A lone `-` is left\n * as text by every spreadsheet and is not flagged; a field that is entirely a number reads as\n * that number, which is what the header says, and is not flagged either. Anything else after\n * the minus is arithmetic or a name.\n *\n * And `+` takes the same exception, which it did not. It is the same rule in the spreadsheet —\n * Lotus compatibility, which converts a leading `+` or `-` to a formula when what follows one\n * parses as a formula and leaves it as text when it does not — so the two signs cannot differ\n * here for a reason that comes from the sign. A channel labelled `+100` was warned about as\n * something a spreadsheet \"reads as the start of a formula rather than as text\", over a cell\n * that opens as 100, which is what the header says; `-100` beside it said nothing, and under\n * `--strict` the difference was an exit code. `+1+1` is still arithmetic and still flagged.\n */\nexport function startsFormula(text: string): boolean {\n if (/^[=@]/u.test(text)) return true;\n if (!/^[+-]./u.test(text)) return false;\n // `\\.\\d*` and not `\\.\\d+`, which is the spelling DECIMAL_FIELD and DECIMAL_DURATION both\n // use for the same question. A trailing point is a number with nothing after it — Excel\n // opens `+1.` as 1 — and one character of difference between three copies of one grammar\n // had this warning firing on a field the paragraph above exempts by name, and failing\n // --strict for it.\n return !/^[+-](?:\\d+(?:\\.\\d*)?|\\.\\d+)(?:[eE][+-]?\\d+)?$/u.test(text);\n}\n\n/**\n * A byte the terminal treats as an instruction rather than as text.\n *\n * C0 and C1, plus DEL. Tab is included deliberately: it is harmless to a terminal but it\n * makes a CSV column name that cannot be typed or matched reliably, which is the other half\n * of what this warning is for.\n */\nfunction isControlCharacter(character: string): boolean {\n const code = character.codePointAt(0) as number;\n return code <= 0x1f || (code >= 0x7f && code <= 0x9f);\n}\n\nconst dec = (buf: Uint8Array, start: number, len: number): string =>\n decodeLatin1(buf, start, start + len);\n\n/** EDF fields are space-padded; trailing NULs also occur in files written by sloppy tools. */\nconst trimField = (s: string): string => s.replace(/[\\0\\s]+$/u, '').replace(/^\\s+/u, '');\n\n/**\n * How many signals the fixed header says there are, read exactly as `parseHeader` will.\n *\n * `EdfFile.open` needs this before it can know how much header to read, and it used to work\n * it out with its own `Number(...)` — which was NUL-tolerant but not comma-tolerant, unlike\n * every other numeric field here. A header written with a comma decimal separator, which\n * COMMA_DECIMAL exists to accept and which the documentation lists this field among, was\n * therefore never given its signal headers at all, and the file died on a message that\n * contradicted itself: \"needs a 768-byte header, but the file is only 848 bytes\".\n *\n * Sharing the parse is what keeps the two from disagreeing again about which files are\n * readable. Null means \"not a usable count\", and the caller reads no further header — the\n * real error then comes from `parseHeader`, which is the one place that decides.\n */\nexport function peekSignalCount(fixed: Uint8Array): number | null {\n const text = normaliseNumberField(dec(fixed, 252, 4)).text;\n if (!DECIMAL_FIELD.test(text)) return null;\n const count = Number(text);\n return Number.isInteger(count) && count > 0 ? count : null;\n}\n\n/**\n * What EDF allows a numeric field to look like, which is less than `Number()` allows.\n *\n * A sign, digits, an optional fractional part, an optional exponent — the spec's own grammar,\n * plus the exponent form the 8-character physical bounds need to reach a magnetometer's range\n * and which real headers use.\n *\n * `Number()` accepts a great deal more, and every one of those forms is a header this tool\n * would have read as a number nobody wrote. A physical maximum of `0x64` came out as 100: it\n * printed as `-100 to 100` in the channel table, went into channels.csv as `physical_max,100`,\n * and set the gain every sample on that channel was scaled by — a whole calibration invented\n * from four bytes that are not a decimal number, exit 0, no diagnostic. `0b1100100` and `0o144`\n * are the same hundred, and `0x02` in the signal-count field is a two-channel recording.\n *\n * The same mistake as `#0x2` reaching channel 2 through `--channels`, `--decimals 0o5` writing\n * five places and `--jobs 0x10` running sixteen, all of which have their own comments and their\n * own fixes. Those were values somebody typed. These are the fields every number in the output\n * is computed from, and the page describing them says \"all fields are ASCII\" and gives the\n * layout digit by digit.\n */\nconst DECIMAL_FIELD = /^[+-]?(?:\\d+(?:\\.\\d*)?|\\.\\d+)(?:[eE][+-]?\\d+)?$/u;\n\n/** A numeric header field, trimmed and with a comma decimal separator turned into a dot. */\nfunction normaliseNumberField(raw: string): { text: string; sawComma: boolean } {\n const text = trimField(raw);\n // Some writers emit a comma decimal separator despite the spec requiring '.'.\n if (text.includes(',') && !text.includes('.')) {\n return { text: text.replace(',', '.'), sawComma: true };\n }\n return { text, sawComma: false };\n}\n\n/**\n * What a header field that is not the number it must be usually means.\n *\n * `BAD_HEADER_FIELD` is raised four ways — an empty numeric field, one that does not parse, one\n * that must be whole and is not, and a signal declaring a negative sample count — and one of\n * the four carried this. The other three printed a bare sentence about a field and stopped,\n * which is the same gap `EdfFile.#UNREADABLE_HINT` was written to close on the read side: a\n * family of errors where one member says what the cause usually is and the rest do not.\n *\n * An empty field is if anything the plainer symptom of the two. A truncated download stops\n * mid-header and leaves the rest as spaces; a byte-shifted file reads a field off the wrong\n * offset and finds whitespace as often as it finds digits. The page has said all four mean\n * this since they were documented together.\n */\nconst BAD_FIELD_HINT = 'The file may be truncated, byte-shifted, or not an EDF file at all.';\n\nfunction parseNumberField(\n raw: string,\n field: string,\n { integer = false, sawComma }: { integer?: boolean; sawComma?: { value: boolean } } = {},\n): number {\n const normalised = normaliseNumberField(raw);\n const text = normalised.text;\n if (normalised.sawComma && sawComma) sawComma.value = true;\n if (text === '') {\n throw new EdfError('BAD_HEADER_FIELD', `Header field \"${field}\" is empty.`, BAD_FIELD_HINT);\n }\n const n = DECIMAL_FIELD.test(text) ? Number(text) : NaN;\n if (!Number.isFinite(n)) {\n throw new EdfError(\n 'BAD_HEADER_FIELD',\n `Header field \"${field}\" is not a number (found ${JSON.stringify(text)}).`,\n BAD_FIELD_HINT,\n );\n }\n if (integer && !Number.isInteger(n)) {\n throw new EdfError(\n 'BAD_HEADER_FIELD',\n `Header field \"${field}\" must be a whole number (found ${JSON.stringify(text)}).`,\n BAD_FIELD_HINT,\n );\n }\n return n;\n}\n\n/** Whether the start time names the sixtieth second. See LEAP_SECOND_START. */\nfunction namesLeapSecond(timeRaw: string): boolean {\n const t = /^(\\d{2})[.:\\-](\\d{2})[.:\\-](\\d{2})$/u.exec(trimField(timeRaw));\n return t !== null && Number(t[3]) === 60;\n}\n\nconst MONTHS = ['JAN', 'FEB', 'MAR', 'APR', 'MAY', 'JUN', 'JUL', 'AUG', 'SEP', 'OCT', 'NOV', 'DEC'];\n\n/**\n * The date an EDF+ recording ID states, which is the only place the file writes a full year.\n *\n * EDF+ requires the recording identification field to begin `Startdate dd-MMM-yyyy`, and\n * requires it to agree with the header's own date field. It is a four-digit year, so it says\n * something the eight-character date field physically cannot.\n */\nfunction recordingIdStartdate(\n recordingId: string,\n): { day: number; month: number; year: number } | null {\n const stated = /^Startdate\\s+(\\d{2})-([A-Za-z]{3})-(\\d{4})(?:\\s|$)/u.exec(recordingId.trim());\n if (!stated) return null;\n const month = MONTHS.indexOf((stated[2] as string).toUpperCase()) + 1;\n if (month === 0) return null;\n return { day: Number(stated[1]), month, year: Number(stated[3]) };\n}\n\n/**\n * EDF stores a two-digit year. The spec pins the century: 85-99 mean 1985-1999\n * and 00-84 mean 2000-2084. Files outside 1985-2084 cannot express their date.\n *\n * Which is why EDF+ writes it again in full, in the recording identification field, and why\n * that is used here when it is there. The rule alone reports a recording made in 1984 as 2084\n * and one made in 2085 as 1985 — a hundred years out, on a file that states the year plainly\n * four fields earlier. Taken only where the two agree about everything the header can express:\n * the same day, the same month, and a four-digit year ending in the two digits the header\n * wrote. A recording ID that contradicts the header is a different problem and is left to the\n * spec's rule, which is at least the one the format defines.\n */\nfunction resolveStartDateTime(\n dateRaw: string,\n timeRaw: string,\n recordingId = '',\n): Date | null {\n const d = /^(\\d{2})[.\\-/](\\d{2})[.\\-/](\\d{2})$/u.exec(trimField(dateRaw));\n const t = /^(\\d{2})[.:\\-](\\d{2})[.:\\-](\\d{2})$/u.exec(trimField(timeRaw));\n if (!d || !t) return null;\n\n const dd = Number(d[1]);\n const mm = Number(d[2]);\n const yy = Number(d[3]);\n const hh = Number(t[1]);\n const mi = Number(t[2]);\n const ss = Number(t[3]);\n\n if (mm < 1 || mm > 12 || dd < 1 || dd > 31 || hh > 23 || mi > 59 || ss > 60) return null;\n\n const stated = recordingIdStartdate(recordingId);\n const year =\n stated !== null && stated.day === dd && stated.month === mm && stated.year % 100 === yy\n ? stated.year\n : yy >= 85\n ? 1900 + yy\n : 2000 + yy;\n const date = new Date(Date.UTC(year, mm - 1, dd, hh, mi, Math.min(ss, 59)));\n // Reject dates that rolled over, e.g. 31.02.\n if (date.getUTCMonth() !== mm - 1 || date.getUTCDate() !== dd) return null;\n return date;\n}\n\n/**\n * Parse the fixed 256-byte header plus the per-signal header block.\n *\n * @param buf At least FIXED_HEADER_BYTES + ns * SIGNAL_HEADER_BYTES bytes.\n * @param fileSize Total size of the file on disk, used to derive the real record count.\n */\nexport function parseHeader(buf: Uint8Array, fileSize: number): EdfHeaderInfo {\n /*\n The first argument, checked before anything is read out of it.\n\n The api page offers this function on its own, so it is reached by a caller holding bytes\n they read themselves — and it took whatever it was handed. A number or a plain object came\n back as Node's own `TypeError: bytes.subarray is not a function`, which names a method the\n caller never called; `undefined` as a property read on a local.\n\n Worse, a string got an answer *about the recording*:\n\n parseHeader('0 ...', 4_000_000)\n EdfError FILE_TOO_SMALL: An EDF header alone needs 256 bytes, but only 11 of this\n 4,000,000-byte file reached the parser.\n\n A string has a `length`, so it reached the short-header branch below and was reported as a\n truncated file — the code a script branches on to quarantine a bad recording, raised over a\n recording nobody had read. That is the distinction `readRecords` draws in as many words:\n \"an `OptionError`, because it is the call that is wrong and not the recording\". The same\n check `decodeRecordAnnotations` makes of its own byte argument, for the reason given there.\n */\n /*\n A view of *bytes*, which `ArrayBuffer.isView` does not mean.\n\n It is true of every typed array and of `DataView`, and 0.8.74 read it as \"these are\n bytes\". Two views it lets through are not:\n\n parseHeader(new DataView(buffer), size)\n TypeError: bytes.subarray is not a function\n\n which is the exact failure that check was written to remove, quoted in its own changelog\n entry — a `DataView` has neither `subarray` nor `length`, so `buf.length < 256` is\n `undefined < 256`, false, and the guard below waves it through to the line that reads\n `buf[0]`. A `DataView` is what a caller reading a header by hand with `getUint8` holds.\n\n parseHeader(new Float64Array(100), 4_000_000)\n EdfError FILE_TOO_SMALL: ... only 100 of this 4,000,000-byte file reached the parser\n\n which is the other failure it was written to remove: `100` is the element count of a view\n holding 800 bytes, and the sentence blames the recording for it.\n\n `BYTES_PER_ELEMENT === 1` is the question actually being asked. It is true of `Uint8Array`,\n `Int8Array`, `Uint8ClampedArray` and the `Buffer` the reader hands this, and undefined on a\n `DataView`.\n */\n if (!ArrayBuffer.isView(buf) || (buf as { BYTES_PER_ELEMENT?: number }).BYTES_PER_ELEMENT !== 1) {\n /*\n A view is named rather than dumped.\n\n `describeValue` renders an object as its JSON, and a hundred-element `Float64Array` of\n header bytes comes back as a hundred doubles in the refusal — the caller's own data\n handed back, which is what 0.8.72 took out of the sentence next door. What locates the\n mistake is which view it is.\n */\n const takes =\n 'parseHeader takes the bytes read from the file — a Uint8Array or a Buffer, one byte ' +\n 'an element — and the size of the file they came out of.';\n throw new OptionError(\n ArrayBuffer.isView(buf)\n ? `buf is a ${(buf as object).constructor?.name ?? 'view'}, which is a view of an ` +\n `ArrayBuffer but not of bytes. ${takes}`\n : `buf must be the header block as bytes, got ${describeValue(buf)}. ${takes}`,\n );\n }\n\n /*\n The second argument, checked before anything is derived from it.\n\n Every count this function reports about the data comes out of `fileSize`, and nothing\n asked what it was. Omit it — which a JavaScript caller does by writing the call the way\n the one-argument functions beside it are written — and the arithmetic runs on `undefined`:\n\n parseHeader(bytes).recordCount // NaN\n parseHeader(bytes).diagnostics[0].message\n // \"The header declares 2 data records but the file contains NaN. Only the NaN\n // records that are present can be converted.\"\n\n A header object claiming NaN records, a warning that says NaN out loud, and no error —\n and `recordCount * recordDuration`, which is how the duration is worked out everywhere\n this value goes, is NaN from there on. `null` was worse from 0.8.5, when the counts in\n these messages started being grouped: grouping it is a TypeError raised from inside the\n number formatter, naming nothing the caller wrote.\n\n The same `OptionError` `assertInputPath` raises for the first argument of `EdfFile.open`,\n for the same reason given there: it is the call that is wrong, not the recording.\n */\n /*\n And a whole number of them, which that check did not ask for.\n\n A file has an integer number of bytes; `fs.stat` reports one, and every count derived here\n divides by a record length in bytes. A fraction survived the division and came out in the\n warnings as though the recording had it:\n\n parseHeader(bytes, 848.5) // \"0.5 bytes after the last complete data record were\n // ignored.\"\n parseHeader(bytes, 900.25) // \"The header declares 2 data records but the file\n // contains 3.\" — and \"12.25 bytes ... were ignored.\"\n\n Three quarters of a byte, reported as a fact about the file, under `TRAILING_BYTES` — the\n code a script matches to decide a recording was truncated. The paragraph above is about\n exactly this: \"Every count this function reports about the data comes out of `fileSize`.\"\n */\n if (typeof fileSize !== 'number' || !Number.isInteger(fileSize) || fileSize < 0) {\n throw new OptionError(\n `fileSize must be the number of bytes in the file, got ${describeValue(fileSize)}.`,\n );\n }\n\n const diagnostics: Diagnostic[] = [];\n const sawComma = { value: false };\n\n if (buf.length < FIXED_HEADER_BYTES) {\n /*\n Which of the two is actually short — the same question the FILE_TOO_SMALL fifty lines\n down was fixed for, in the words its comment still uses: \"The file size was quoted\n either way, so a caller that had read too little ... produced arithmetic that refuted\n itself.\" This is the raising that comment describes, and it went on doing it:\n\n parseHeader(new Uint8Array(100), 5000)\n File is 5,000 bytes; an EDF header alone needs at least 256.\n\n 5,000 is not less than 256. A reader following that sentence looks for a truncation\n that is not there, and the number they are given to check against the file is the one\n that is fine. Reached from the library, where the caller holds both — `EdfFile.open`\n reads 256 bytes before it reads anything else, so the two agree by construction there.\n */\n const short = fileSize < FIXED_HEADER_BYTES;\n throw new EdfError(\n 'FILE_TOO_SMALL',\n short\n ? `File is ${counted(fileSize, 'byte')}; an EDF header alone needs at least ${FIXED_HEADER_BYTES}.`\n : `An EDF header alone needs ${FIXED_HEADER_BYTES} bytes, but only ` +\n `${grouped(buf.length)} of this ${grouped(fileSize)}-byte file reached the parser.`,\n short\n ? 'A file this small is truncated, or is not an EDF or BDF recording at all: every one of ' +\n 'them opens with a fixed 256-byte header.'\n : 'parseHeader takes the header block and the size of the file it came out of. This ' +\n 'call was given fewer bytes than the header it was asked to read.',\n );\n }\n\n // BDF (BioSemi) marks itself with byte 255 followed by 'BIOSEMI', and stores\n // 3-byte samples instead of 2. Everything else about the layout is identical.\n const isBdf = buf[0] === 0xff && dec(buf, 1, 7) === 'BIOSEMI';\n const version = isBdf ? 'BIOSEMI' : trimField(dec(buf, 0, 8));\n\n const patientId = trimField(dec(buf, 8, 80));\n const recordingId = trimField(dec(buf, 88, 80));\n const startDateRaw = trimField(dec(buf, 168, 8));\n const startTimeRaw = trimField(dec(buf, 176, 8));\n const headerBytes = parseNumberField(dec(buf, 184, 8), 'number of header bytes', {\n integer: true,\n sawComma,\n });\n const reserved = trimField(dec(buf, 192, 44));\n const declaredRecordCount = parseNumberField(dec(buf, 236, 8), 'number of data records', {\n integer: true,\n sawComma,\n });\n const recordDuration = parseNumberField(dec(buf, 244, 8), 'duration of a data record', {\n sawComma,\n });\n const signalCount = parseNumberField(dec(buf, 252, 4), 'number of signals', {\n integer: true,\n sawComma,\n });\n\n if (signalCount <= 0) {\n throw new EdfError(\n 'INVALID_SIGNAL_COUNT',\n `Header declares ${counted(signalCount, 'signal')}; expected at least 1.`,\n BAD_FIELD_HINT,\n );\n }\n if (!(recordDuration > 0)) {\n throw new EdfError(\n 'INVALID_RECORD_DURATION',\n `Header declares a data record duration of ${plainSeconds(recordDuration)}s; expected a positive number.`,\n BAD_FIELD_HINT,\n );\n }\n\n const expectedHeaderBytes = FIXED_HEADER_BYTES + signalCount * SIGNAL_HEADER_BYTES;\n if (buf.length < expectedHeaderBytes) {\n throw new EdfError(\n 'FILE_TOO_SMALL',\n /*\n Which of the two is actually short.\n\n The file size was quoted either way, so a caller that had read too little — the\n signal count parsed one way here and another way there — produced arithmetic that\n refuted itself: \"needs a 768-byte header, but the file is only 848 bytes\". A reader\n following that looks for a truncation that is not there.\n */\n `File declares ${counted(signalCount, 'signal')}, which needs a ${grouped(expectedHeaderBytes)}-byte header, ` +\n (fileSize < expectedHeaderBytes\n ? `but the file is only ${grouped(fileSize)} bytes.`\n : `but only ${grouped(buf.length)} bytes of it were handed to the parser.`),\n 'Either the recording is truncated inside its own header, or the signal count was ' +\n 'read from bytes that are not it. Both leave the channel descriptions unfinished.',\n );\n }\n if (headerBytes !== expectedHeaderBytes) {\n diagnostics.push({\n code: 'HEADER_BYTES_MISMATCH',\n severity: 'warning',\n message:\n `Header says it is ${grouped(headerBytes)} bytes, but ${counted(signalCount, 'signal')} ` +\n `${signalCount === 1 ? 'requires' : 'require'} ${grouped(expectedHeaderBytes)} bytes. ` +\n `Using the value computed from the signal count.`,\n hint:\n 'Where the data starts is worked out from the signal count, not from this field, so ' +\n 'nothing is read from the wrong offset. A writer that got this one wrong may have ' +\n 'got others wrong too.',\n });\n }\n\n // Signal headers are field-major: all labels, then all transducers, and so on.\n const base = FIXED_HEADER_BYTES;\n const readField = (offsetUnits: number, width: number, i: number): string =>\n dec(buf, base + offsetUnits * signalCount + i * width, width);\n\n // EDF+ writes 'EDF+C'/'EDF+D' here; BDF+ writes 'BDF+C'/'BDF+D'. The two mean the\n // same thing, so both are normalised to a single continuity marker.\n const continuityTag = /^(?:EDF|BDF)\\+([CD])/u.exec(reserved);\n const continuity: 'EDF+C' | 'EDF+D' | null =\n continuityTag === null ? null : continuityTag[1] === 'D' ? 'EDF+D' : 'EDF+C';\n\n const signals: EdfSignal[] = [];\n let byteOffsetInRecord = 0;\n const bytesPerSample = isBdf ? 3 : 2;\n const seenLabels = new Map<string, number[]>();\n const emptyLabels: number[] = [];\n\n for (let i = 0; i < signalCount; i++) {\n const label = trimField(readField(0, 16, i));\n const transducer = trimField(readField(16, 80, i));\n const physicalDimension = trimField(readField(96, 8, i));\n const physicalMin = parseNumberField(readField(104, 8, i), `physical minimum (signal ${i})`, {\n sawComma,\n });\n const physicalMax = parseNumberField(readField(112, 8, i), `physical maximum (signal ${i})`, {\n sawComma,\n });\n const digitalMin = parseNumberField(readField(120, 8, i), `digital minimum (signal ${i})`, {\n integer: true,\n sawComma,\n });\n const digitalMax = parseNumberField(readField(128, 8, i), `digital maximum (signal ${i})`, {\n integer: true,\n sawComma,\n });\n const prefiltering = trimField(readField(136, 80, i));\n const samplesPerRecord = parseNumberField(\n readField(216, 8, i),\n `samples per record (signal ${i})`,\n { integer: true, sawComma },\n );\n const sigReserved = trimField(readField(224, 32, i));\n\n if (samplesPerRecord < 0) {\n throw new EdfError(\n 'BAD_HEADER_FIELD',\n `Signal ${i} (\"${label}\") declares ${samplesPerRecord} samples per record.`,\n BAD_FIELD_HINT,\n );\n }\n\n const isAnnotations = label === ANNOTATIONS_LABEL || label === BDF_ANNOTATIONS_LABEL;\n\n signals.push({\n index: i,\n label,\n transducer,\n physicalDimension,\n physicalMin,\n physicalMax,\n digitalMin,\n digitalMax,\n prefiltering,\n samplesPerRecord,\n reserved: sigReserved,\n isAnnotations,\n samplingRate: samplesPerRecord / recordDuration,\n byteOffsetInRecord,\n });\n byteOffsetInRecord += samplesPerRecord * bytesPerSample;\n\n if (!isAnnotations) {\n /*\n A label is free text out of the file, and it becomes a column name in signals.csv.\n\n `--info` has escaped control bytes since it was written, because an ANSI escape in a\n header can drive the reader's terminal — `\\x1b[2J` clears the screen. The CSV had no\n such protection and needed none for correctness: quoting makes any byte safe for a\n parser, and this still passes the label through exactly as the file gives it, because\n losing what the header says is not an improvement.\n\n What was missing is the sentence saying so. A recording whose channel is labelled\n `\\x1b[2Jgone` converted with no warning at all, and `cat signals.csv` then cleared\n the terminal — while a script referencing that column by name carried an invisible\n control character in it. NONPRINTABLE_LABEL has been declared and documented as\n reserved since 0.1; this is it doing its job.\n */\n /*\n Which of the two fields carries them, because the consequences are not the same.\n\n The message said \"label or unit\", and then said the bytes \"will appear in the CSV\n column name\" and that \"the name cannot be typed\" — both of which are about the label.\n A channel labelled plainly `ECG` in a unit of `u\\x07V` got all of it: its column is\n `ECG`, `--channels ECG` selects it and exits 0, and the byte is in channels.csv's\n `unit` cell, which the warning never mentioned. Three sentences, none of them true of\n the file that raised it, on a warning whose whole purpose is to say where an invisible\n byte went.\n */\n /*\n All four free-text fields, not the two that were checked.\n\n `transducer` and `prefiltering` are free text out of the header exactly as the label\n and the unit are, and they land in channels.csv exactly as the unit does — so an ESC\n byte in a transducer field reached the CSV raw with nothing said, and `cat\n channels.csv` would drive the terminal. That is the hazard this warning exists for,\n two columns over. 0.5.71 made it name which field carries them; this is the rest of\n the fields it can name.\n */\n const fields = [\n ['label', label],\n ['unit', physicalDimension],\n ['transducer', transducer],\n ['prefiltering', prefiltering],\n ] as const;\n const affected = fields.filter(([, text]) => [...text].some(isControlCharacter));\n const control = affected.flatMap(([, text]) => [...text].filter(isControlCharacter));\n if (control.length > 0) {\n /*\n How many of them get named is the header's decision, and it was unbounded.\n\n Every other enumeration whose length the file controls goes through `listed`, which\n is the helper written for exactly this — \"without letting the file decide how long\n the sentence gets\". This one joined the whole set. Four free-text fields of 16, 8, 80\n and 80 bytes can carry 63 distinct control codes between them, and did:\n\n warning: Signal 0's label, unit and transducer contain 63 control characters\n (\\x01, \\x02, \\x03, ... \\x9e), which will appear in the CSV column name and in\n channels.csv exactly as the header has them.\n\n 549 characters on one line, from a warning whose point is the short sentence around\n the list. The count is already in that sentence — \"63 control characters\" — so the\n tail the cut hides is the part the reader was told twice.\n */\n const shown = listed(\n [...new Set(control)].map(\n (c) => `\\\\x${(c.codePointAt(0) as number).toString(16).padStart(2, '0')}`,\n ),\n );\n const inLabel = affected.some(([name]) => name === 'label');\n // \"label and unit\", not \"label, unit\" — `listed` is for long enumerations that get\n // truncated, and this is a sentence with at most four items in it.\n const names = affected.map(([name]) => name);\n const named =\n names.length === 1\n ? (names[0] as string)\n : `${names.slice(0, -1).join(', ')} and ${names[names.length - 1] as string}`;\n // Where they land, which is the question the reader has. A label becomes a column\n // name in signals.csv; the other three are cells of channels.csv and nothing else.\n // Named down to the cell when there is one of them, because that is the answer to\n // \"where did it go\" — `channels.csv` alone leaves a reader scanning fourteen columns.\n /*\n And whether there is a channels.csv at all, which this took for granted.\n\n `--stdout` writes the signal table and nothing else — no channels.csv, no\n annotations.csv, no metadata.json. A control byte in a unit reaches no file at all\n in that mode, and this said it would be in a cell of one:\n\n $ edf2csv control-labels.edf --stdout | less\n warning: Signal 0's label and unit contain 2 control characters (\\x1b), which\n will appear in the CSV column name and in channels.csv's unit cell\n exactly as the header has them.\n ... Printing the CSV to a terminal may do more than print it.\n\n Which is the mode this warning matters most in: `--stdout` *is* printing the CSV to\n a terminal, and the hint two lines down says so. The header is parsed before any\n destination is chosen, so the sentence says what is true of both rather than\n guessing — the same reason the `DUPLICATE_LABEL` hint above names two layouts.\n */\n const cells = affected.filter(([name]) => name !== 'label').map(([name]) => name);\n const where =\n cells.length === 1\n ? `channels.csv's ${cells[0] as string} cell in any conversion that writes one`\n : 'the channels.csv of any conversion that writes one';\n /*\n \"The CSV column name\" is the wide layout's answer, given in both.\n\n A long signals.csv has three columns — time_s, channel, value — and a label is not\n one of them: it is a value in the `channel` column, once per row. So a control byte\n in a label reaches one cell of the header line under the default layout and every\n row of the table under `--layout long`, and the sentence naming where it went named\n only the first. Same fault 0.8.24 fixed for `DUPLICATE_LABEL`'s message and 0.8.43\n for its hint.\n\n The parser cannot know the layout, and unlike those two this sentence does not have\n room to name both — it already carries the field list, the byte list and where the\n cell fields land. \"The channel's name\" is what both layouts call it: the term the\n long layout's own warnings use, and what a column name is.\n */\n const lands =\n inLabel && cells.length > 0\n ? `which will appear as the channel's name in signals.csv and in ${where}`\n : inLabel\n ? \"which will appear as the channel's name in signals.csv\"\n : `which will appear in ${where}`;\n diagnostics.push({\n code: 'NONPRINTABLE_LABEL',\n severity: 'warning',\n message:\n `Signal ${i}'s ${named} ${affected.length === 1 ? 'contains' : 'contain'} ` +\n // A comma before the closing clause, which now has a clause of its own inside it.\n `${counted(control.length, 'control character')} (${shown}), ${lands}, exactly as the ` +\n `header has ${control.length === 1 ? 'it' : 'them'}.`,\n hint:\n /*\n Every branch has to print a command that works.\n\n The middle one quoted the label back, which is right until the label is empty:\n an unlabelled channel got `--channels \"\"`, and that exits 2 with \"--channels was\n given but lists no channel names\". A hint whose command fails is worse than no\n hint, and this warning's whole job is to say how to reach a channel whose header\n text you cannot type. `EMPTY_LABEL` already says the position is the only way in\n for such a channel; so does this now.\n\n A comma is the third way. `--channels` separates names with one, and splits on\n every occurrence, so a channel labelled `EEG Fpz-Cz, ref` cannot be selected by\n name at all: the quoted-back advice printed `--channels \"EEG Fpz-Cz, ref\"`, which\n exits 2 with `No channel named \"EEG Fpz-Cz\"` — a channel the file does not have,\n named after half of one it does. Commas in labels are ordinary, since EDF labels\n are free text, and the CSV header quotes them; only this one hint claimed\n something about them that isn't so.\n */\n /*\n And a fourth way, which this branch printed straight past.\n\n A shell expands `$`, a backtick and a backslash inside double quotes, so a\n channel labelled `EEG $ref` was answered with `--channels \"EEG $ref\"` — which\n arrives as `EEG ` and exits 2 on a channel the file does not have. A backtick\n opens a command substitution and the pasted line does not even finish. That is\n the failure 0.7.18 fixed for `--channels`' own suggestion, and `typeable` is the\n rule it fixed it with: double quotes where they survive, single quotes where\n they do not, null where nothing does. Asking it settles which branch this takes\n as well, so the two cannot disagree about one label again.\n */\n (typeable(label) === null\n ? `Address the channel by position with --channels \"#${i}\" rather than by name, ` +\n `since ${\n inLabel\n ? 'the name cannot be typed'\n : label === ''\n ? 'it has no label'\n : 'a comma in the label would read as two names'\n }. `\n : `The column name is unaffected, so --channels ${typeable(label) as string} still selects it. `) +\n 'Printing the CSV to a terminal may do more than print it.',\n });\n }\n\n /*\n Header text a spreadsheet will run rather than read.\n\n The same four free-text fields, asked a different question. `=`, `+` and `@` start a\n formula in Excel, LibreOffice and Sheets no matter which file the cell came from, and\n these fields land in a CSV header row and in channels.csv verbatim — so a channel\n labelled `=1+1` opens as a column headed 2, and `=HYPERLINK(...)` opens as a link\n nobody in the reading chain wrote. SECURITY.md already calls these fields\n attacker-controlled because they reach filenames; this is where they reach a program\n that executes text.\n\n Not `-`, which the same advice usually includes. A lone `-` is a real convention for\n \"no unit\" and appears in the fixtures, a leading `-` on a montage label is ordinary,\n and neither is executed unless what follows parses as a formula — so warning on it\n would fire on files that are fine, which is how a warning gets ignored.\n\n Said, not fixed. Prefixing the cell with a quote is the usual mitigation and would mean\n writing something the header does not say, which is the one thing this tool refuses to\n do; NONPRINTABLE_LABEL answers control bytes the same way.\n */\n const formulaic = fields.filter(([, text]) => startsFormula(text));\n if (formulaic.length > 0) {\n const names = formulaic.map(([name]) => name);\n const named =\n names.length === 1\n ? (names[0] as string)\n : `${names.slice(0, -1).join(', ')} and ${names[names.length - 1] as string}`;\n const shown = [...new Set(formulaic.map(([, text]) => text[0] as string))].join(', ');\n diagnostics.push({\n code: 'FORMULA_LABEL',\n severity: 'warning',\n message:\n `Signal ${i}'s ${named} ${formulaic.length === 1 ? 'starts' : 'start'} with ` +\n `${shown}, which Excel, LibreOffice and Google Sheets read as the start of a ` +\n `formula rather than as text.`,\n hint:\n 'The text is written exactly as the header has it, so the cell is what the ' +\n 'recording says. Open the CSV with pandas or R, or import it into the ' +\n 'spreadsheet as text, if you do not want it evaluated.',\n });\n }\n\n if (label === '') {\n // Collected, not reported here: what this channel's column ends up called depends on\n // whether some later channel is literally labelled `signal_<i>`, and inside this loop\n // the later channels do not exist yet. See the pass below.\n emptyLabels.push(i);\n } else {\n // Collected rather than reported here: a label repeated five times should\n // produce one warning naming all five, not four near-identical pairs.\n const seen = seenLabels.get(label);\n if (seen) seen.push(i);\n else seenLabels.set(label, [i]);\n }\n\n if (samplesPerRecord === 0) {\n diagnostics.push({\n code: 'NO_SAMPLES',\n severity: 'warning',\n message: `Signal ${i} (\"${label}\") carries no samples at all (0 per data record).`,\n hint: 'It is described in channels.csv but left out of the converted data.',\n });\n }\n\n /*\n Too large to represent, and too small — the second was silent.\n\n The gain is the span divided by the digital range, and a span of 2e-320 over 65,535\n codes is 3e-325: below the smallest subnormal double, so it underflows to +0. The\n scaler's flat-range branch then handed every code the same physical value, and a\n channel of 65,536 distinct readings became one repeated number with nothing raised at\n all. One power of ten away, at 1e-319, the same file raises VALUE_RESOLUTION.\n\n Both are the same fact about the header — the span cannot be turned into a mapping —\n so both get this code, and both leave the cells empty rather than filling them with a\n value the header cannot justify.\n */\n const span = physicalMax - physicalMin;\n const underflowed = span !== 0 && span / (digitalMax - digitalMin) === 0;\n if (!Number.isFinite(span) || underflowed) {\n diagnostics.push({\n code: 'UNUSABLE_PHYSICAL_RANGE',\n severity: 'warning',\n message:\n `Signal ${i} (\"${label}\") declares a physical range from ${physicalMin} to ` +\n `${physicalMax}, whose span is too ${underflowed ? 'small' : 'large'} to ` +\n `represent, so its values cannot be scaled.`,\n hint: 'Its cells are left empty rather than filled with a value the header cannot justify.',\n });\n } else if (digitalMax === digitalMin) {\n diagnostics.push({\n code: 'DEGENERATE_DIGITAL_RANGE',\n severity: 'warning',\n message:\n `Signal ${i} (\"${label}\") has digital minimum equal to digital maximum ` +\n `(${digitalMin}), so its values cannot be scaled.`,\n hint: 'Its cells are left empty rather than filled with a value the header cannot justify.',\n });\n } else if (physicalMax === physicalMin) {\n diagnostics.push({\n code: 'DEGENERATE_PHYSICAL_RANGE',\n severity: 'warning',\n message:\n `Signal ${i} (\"${label}\") has physical minimum equal to physical maximum ` +\n `(${physicalMin}), so every sample converts to the same value.`,\n /*\n The one branch of the four that fills the cells, and the only one that said\n nothing about them.\n\n Its three neighbours all end \"Its cells are left empty rather than filled with a\n value the header cannot justify\", which is the opposite of what happens here: the\n mapping is defined — it has one point in it — so `physicalMin` is written into\n every cell, and a reader who had learned the family's answer from the branch above\n gets it backwards. A column of one repeated number is also the shape a genuinely\n flat recording takes, which is the confusion worth heading off.\n */\n hint:\n 'Its cells carry that value rather than being left empty, since the mapping is ' +\n 'defined — it just has one point in it. The distinct digital codes behind them ' +\n 'are not recoverable from the CSV.',\n });\n } else if ((physicalMax - physicalMin) * (digitalMax - digitalMin) < 0) {\n /*\n Polarity is inverted when the gain is negative, and the gain is\n (physicalMax - physicalMin) / (digitalMax - digitalMin) — so it is the sign of the\n two spans together that matters, not the physical pair alone.\n\n Testing only `physicalMax < physicalMin` was wrong in both directions. A file with\n its DIGITAL bounds reversed is just as inverted and drew no warning at all, handing\n back sign-flipped EEG with nothing to indicate it. A file with BOTH pairs reversed\n has a positive gain and is not inverted, yet was warned about — a message that was\n simply untrue of that recording.\n */\n const reversed =\n physicalMax < physicalMin\n ? `physical minimum ${physicalMin} above physical maximum ${physicalMax}`\n : `digital minimum ${digitalMin} above digital maximum ${digitalMax}`;\n diagnostics.push({\n code: 'INVERTED_PHYSICAL_RANGE',\n severity: 'warning',\n message: `Signal ${i} (\"${label}\") declares ${reversed}, which inverts its polarity.`,\n hint: 'The values are converted exactly as the header specifies, inversion included.',\n });\n }\n }\n }\n\n /*\n What an unlabelled channel is actually called, which the message used to guess.\n\n A channel with no label takes `signal_<index>` — unless another channel is literally\n labelled that, which EDF permits, since labels are free text and nothing enforces anything\n about them. Then both collide and both are suffixed. The warning said \"It will appear as\n \"signal_0\"\" while the file's header read `time_s,signal_0_ch0,signal_0_ch1`: the one\n sentence the run printed named a column that exists in neither signals.csv nor\n channels.csv.\n\n The other half was silent. The channel that genuinely carries the label `signal_0` lost\n its own column name to a collision with a synthesised one, and nothing said so —\n DUPLICATE_LABEL did not fire, because the two labels are not the same label. Both halves\n are one sentence here, because they are one event.\n\n No specific suffixed name is quoted. The suffix rule has a second pass for names that are\n still shared afterwards, and a message that hard-coded `_ch<index>` would be guessing again\n in exactly the way this is fixing.\n */\n for (const index of emptyLabels) {\n const taken = seenLabels.get(`signal_${index}`);\n diagnostics.push({\n code: 'EMPTY_LABEL',\n severity: 'warning',\n message:\n taken === undefined\n ? `Signal ${index} has no label. It will appear as \"signal_${index}\".`\n : `Signal ${index} has no label, so it takes the name \"signal_${index}\" — which ` +\n `${taken.length === 1 ? 'signal' : 'signals'} ${listed(taken.map(String))} already ` +\n `${taken.length === 1 ? 'carries' : 'carry'} as a label, so both columns are ` +\n `suffixed with their position instead.`,\n /*\n The position, not the word \"position\".\n\n A hint that offers a command has to offer one that can be typed — 0.7.18 and 0.7.19\n went through the others making sure each one could be pasted, and NONPRINTABLE_LABEL\n two hundred lines up writes `--channels \"#${i}\"` with the number in it. This one said\n `--channels \"#<position>\"` while the sentence above it began \"Signal 0\", so the\n reader was asked to carry a number across from the message and put it in themselves.\n */\n hint:\n 'The name is built from the position rather than read from the header, so it moves ' +\n `if the file's channels do. Select the channel as --channels \"#${index}\" to say ` +\n 'which one you mean without depending on it.',\n });\n }\n\n /*\n A timestamp that is not one.\n\n EDF gives the start date and time eight characters each, and nothing stops a writer\n putting `32.13.99` and `25.61.61` there. `--info` has always echoed the raw fields with\n \"(unparseable)\" beside them, but nothing was raised: the conversion exited 0, `--strict`\n passed, and metadata.json recorded `start_datetime_local: null` with no note against it.\n\n Every other unusable header field reports itself — a degenerate digital range, a physical\n span that cannot be represented, a comma decimal separator, a header whose declared size\n disagrees with its signal count. This was the one that did not, and it is the field\n output-files points at for turning `time_s` into an absolute instant.\n */\n /*\n The sixtieth second, which is a second UTC has and a calendar date does not.\n\n `resolveStartDateTime` admits `ss === 60` on purpose — a recorder synchronised to UTC\n through a leap second writes `23.59.60`, and refusing it would throw away a date that is\n otherwise perfectly good over one second. What it then does is `Math.min(ss, 59)`, because\n `Date.UTC(..., 60)` rolls over into the next minute and would move the instant the other\n way, by fifty-nine seconds more.\n\n Keeping the nearest instant is the right answer. Keeping it in silence was not: `--info`\n printed `Recorded 2020-01-01 23:59:59` and metadata.json recorded the same, for a header\n that says `23.59.60`, with `--strict` exiting 0. Every other header field this tool cannot\n represent exactly says so — a comma decimal separator, a physical span that overflows, a\n record count that disagrees with the file — and this is the field `time_s` is documented as\n being added to.\n */\n if (\n namesLeapSecond(startTimeRaw) &&\n resolveStartDateTime(startDateRaw, startTimeRaw, recordingId) !== null\n ) {\n diagnostics.push({\n code: 'LEAP_SECOND_START',\n severity: 'warning',\n message:\n `The header's start time (\"${startTimeRaw}\") names the sixtieth second of a minute, ` +\n `which no calendar date has.`,\n hint:\n 'It is recorded as the fifty-ninth second, one second earlier, since that is the ' +\n 'nearest instant a date can hold. time_s is unaffected — it counts from the start of ' +\n 'the recording either way.',\n });\n }\n\n /*\n Two dates in one header, disagreeing.\n\n EDF+ requires the recording identification field's `Startdate` to be the header's start\n date. Where it is, its four digits settle the century — see resolveStartDateTime. Where it\n is not, one of the two is wrong and there is no way to tell which, so the date field is\n used, being the one the format defines. That was done in silence, on a header that plainly\n contradicts itself:\n\n Recorded 2002-03-02 22:15:00\n Recording Startdate 05-MAR-2002 PSG-1234/2002 NN Telemetry03\n\n The same shape as a record count that disagrees with the file, or a declared header size\n that disagrees with the signal count, both of which have said so for versions.\n */\n const statedDate = recordingIdStartdate(recordingId);\n const headerDate = /^(\\d{2})[.\\-/](\\d{2})[.\\-/](\\d{2})$/u.exec(trimField(startDateRaw));\n if (statedDate !== null && headerDate !== null) {\n const day = Number(headerDate[1]);\n const month = Number(headerDate[2]);\n const yy = Number(headerDate[3]);\n if (statedDate.day !== day || statedDate.month !== month || statedDate.year % 100 !== yy) {\n diagnostics.push({\n code: 'START_DATE_MISMATCH',\n severity: 'warning',\n message:\n `The header's start date (\"${startDateRaw}\") and the date its recording ` +\n `identification states (\"${String(statedDate.day).padStart(2, '0')}-` +\n `${MONTHS[statedDate.month - 1] as string}-${statedDate.year}\") are different ` +\n `dates, which EDF+ does not permit.`,\n hint:\n 'The start date field is used, since that is the one the format defines. Which of ' +\n 'the two is right is not knowable from the file, so start_datetime_local may name ' +\n 'the wrong day.',\n });\n }\n }\n\n if (resolveStartDateTime(startDateRaw, startTimeRaw, recordingId) === null) {\n diagnostics.push({\n code: 'START_TIME_UNREADABLE',\n severity: 'warning',\n message:\n `The header's start date and time (\"${startDateRaw}\" and ` +\n `\"${startTimeRaw}\") are not a date and a time, so the recording has ` +\n `no start instant.`,\n hint:\n 'time_s is unaffected — it counts from the start of the recording either way. What ' +\n 'cannot be done is turning it into a wall-clock instant, and metadata.json records ' +\n 'start_datetime_local as null.',\n });\n }\n\n for (const [label, indices] of seenLabels) {\n if (indices.length < 2) continue;\n diagnostics.push({\n code: 'DUPLICATE_LABEL',\n severity: 'warning',\n /*\n Cut by the function that cuts every other list in a sentence here.\n\n `join` names all of them, however many there are, and a header may declare as many\n channels as it likes under one label: a 200-channel montage all labelled `T8-P8` — which\n is exactly the kind of file this warning is for, since CHB-MIT ships two of them —\n produced a single 1,100-character line of positions with the sentence that mattered at\n the front of it. `listed` shows eight and counts the rest, which is what the rate\n warning, the leftover-file warning, the channel-position lists in `--channels` and the\n `EMPTY_LABEL` message one loop up all already do. This was the last `join` of a\n file-controlled list left in a diagnostic.\n\n Two positions render identically either way, so the ordinary duplicate reads as it\n always has.\n */\n /*\n Positions written `#N`, which is how a position is written everywhere it is meant to be\n typed: `--channels \"#0\"`, \"This file has signal channels at #0, #1, #2\", and this\n warning's own namesake from channel selection — \"(positions #0, #1); all of them were\n selected\". This one said \"(positions 0, 1)\", two paragraphs above the page that tells\n the reader to \"address it by position with #N\". The number is the same; the form that\n works is not.\n */\n message:\n `${counted(indices.length, 'signal')} share the label \"${label}\" ` +\n `(positions ${listed(indices.map((i) => `#${i}`))}).`,\n /*\n A sentence about the wide layout, printed in both — the same fault 0.8.24 fixed for\n the other raiser of this code, two lines further down the same run.\n\n A long signals.csv has three columns, `time_s`, `channel` and `value`, and none of\n them comes from a label: a channel appears there as a value in the `channel` column.\n `label-suffix-collision.edf --layout long` printed both halves back to back:\n\n warning: 2 signals share the label \"T8\" (positions #0, #1).\n Their columns are suffixed with the signal number so they stay\n distinguishable.\n warning: Signal 2 is labelled \"T8_ch0\", ... so it is named \"T8_ch0_ch2\" in the\n channel column.\n Channel names are unique; look this channel up in channels.csv by its\n signal_index.\n\n The plan raises the second and knows the layout. The header raises this one and\n cannot: it is parsed before any conversion is planned, and `EdfFile.open` hands these\n diagnostics to callers who have asked for no layout at all. So the sentence names\n both, rather than guessing which one is being written.\n */\n hint:\n 'Their names are suffixed with the signal number so they stay distinguishable: a ' +\n 'column name each in the wide layout, and a distinct value in the channel column ' +\n 'under --layout long.',\n });\n }\n\n const recordBytes = byteOffsetInRecord;\n if (recordBytes <= 0) {\n throw new EdfError(\n 'NO_SAMPLES',\n 'No signal in this file carries any samples (every channel declares 0 samples per record).',\n 'The header describes the channels and nothing has data behind them, so there is no ' +\n 'record to read. A header written before recording began, or copied from another ' +\n 'file, produces this.',\n );\n }\n\n if (sawComma.value) {\n diagnostics.push({\n code: 'COMMA_DECIMAL',\n severity: 'warning',\n message: 'Some header numbers use a comma decimal separator, which the EDF spec does not allow.',\n hint: 'They were read as decimal points. Check the values in the channel table.',\n });\n }\n\n const dataBytes = fileSize - expectedHeaderBytes;\n if (dataBytes < 0) {\n // With the two figures, like the other two FILE_TOO_SMALL messages and unlike this one,\n // which named neither — the same thing the NO_DATA_RECORDS message below was fixed for:\n // \"the message carried no figures at all, so nothing in it could be checked against the\n // file\". Reached by a caller handing `parseHeader` a header and a smaller size than the\n // one it came out of, which is a mismatch worth being able to see.\n throw new EdfError(\n 'FILE_TOO_SMALL',\n `File is ${counted(fileSize, 'byte')}, which is less than the ${grouped(expectedHeaderBytes)} ` +\n `its own header occupies.`,\n 'The header and the size came from different reads: parseHeader was handed a byte ' +\n 'count smaller than the header block it was given.',\n );\n }\n const recordCount = Math.floor(dataBytes / recordBytes);\n const trailingBytes = dataBytes - recordCount * recordBytes;\n\n if (recordCount === 0) {\n /*\n Which of the two, and with the numbers.\n\n \"The recording was probably interrupted before any data was written\" is right about an\n empty file and wrong about the other way to get here: a header declaring records larger\n than the data present. A 606 KB file holding 589 KB of samples — 60% of one record, more\n than half a million readings — was told no data was written, and the message carried no\n figures at all, so nothing in it could be checked against the file. The declared record\n size is the thing to look at, and it was the one thing not said.\n\n Still an error either way. A record is the unit the format is addressed in, and there is\n nothing smaller to convert.\n */\n const empty = dataBytes === 0;\n throw new EdfError(\n 'NO_DATA_RECORDS',\n empty\n ? 'The file contains a header and no data at all.'\n : `The file contains ${counted(dataBytes, 'byte')} of data, which is less than the ` +\n `${grouped(recordBytes)} its header says one data record takes.`,\n empty\n ? 'The recording was probably interrupted before any data was written.'\n : 'Either the recording was cut short part way through its first record, or the ' +\n 'header describes records larger than the ones actually written. Check the ' +\n 'samples-per-record fields against the file size.',\n );\n }\n\n if (declaredRecordCount === -1) {\n diagnostics.push({\n code: 'RECORD_COUNT_UNKNOWN',\n severity: 'warning',\n message:\n `The header does not say how many data records the file has (-1), which the spec allows ` +\n `for recordings still in progress. Using the ${counted(recordCount, 'record')} the file actually contains.`,\n hint:\n 'That count comes from the size of the file, so a recording still being written ' +\n 'converts as much of it as was on disk when this run read it.',\n });\n } else if (declaredRecordCount !== recordCount) {\n diagnostics.push({\n code: 'RECORD_COUNT_MISMATCH',\n severity: 'warning',\n // Both counts through `counted`, not only the second. A header declaring one record\n // over a file holding three read \"declares 1 data records\" — the slip the sentence\n // beside it has been holding to since it was written.\n message:\n `The header declares ${counted(declaredRecordCount, 'data record')} but the file ` +\n `contains ${grouped(recordCount)}. Only the ${counted(recordCount, 'record')} that ` +\n `${recordCount === 1 ? 'is' : 'are'} present can be converted.`,\n hint:\n declaredRecordCount > recordCount\n ? 'The recording looks truncated. It may have been cut short or copied incompletely.'\n : 'The file is longer than its header claims.',\n });\n }\n\n if (trailingBytes > 0) {\n diagnostics.push({\n code: 'TRAILING_BYTES',\n severity: 'warning',\n message: `${counted(trailingBytes, 'byte')} after the last complete data record ${trailingBytes === 1 ? 'was' : 'were'} ignored.`,\n hint:\n 'A record is the unit this format is addressed in, and a partial one says nothing ' +\n 'about which samples it holds or when they were taken. Every complete record is ' +\n 'converted.',\n });\n }\n\n const isEdfPlus = continuity !== null;\n if (continuity === 'EDF+D') {\n diagnostics.push({\n code: 'DISCONTINUOUS',\n severity: 'warning',\n /*\n What the marker says, which is all this function has.\n\n The sentence asserted a fact about the records — \"its data records are not contiguous\n in time\" — from a header field, one record's worth of which this has not read. An\n EDF+D file whose records happen to sit end to end is unusual and perfectly legal, and\n the rest of the report already knows: `--info` prints the `Time span` line only when\n the span and the duration differ, so on such a file it stays silent and this warning\n three lines below it says the opposite.\n\n The marker is what is worth reporting, and it is what the continuous twin of this\n warning reports — \"This file is marked continuous (EDF+C), but 1 of its 3 data records\n says it starts somewhere other than where continuity puts it\": the field first, the\n evidence after, raised where the evidence is. `withTimingPromiseKept` already withdraws\n this warning's hint for the same reason, in the same place, and left the sentence above\n it making a claim of its own.\n */\n message:\n `This recording is marked discontinuous (${isBdf ? 'BDF+D' : 'EDF+D'}): its data ` +\n `records need not be contiguous in time.`,\n hint: 'Each row carries its true recording time, so gaps stay visible instead of being closed.',\n });\n }\n\n const dataSignals = signals.filter((s) => !s.isAnnotations);\n if (dataSignals.length === 0) {\n diagnostics.push({\n code: 'NO_SIGNAL_CHANNELS',\n severity: 'warning',\n /*\n The marker as the file spells it, which is what the DISCONTINUOUS warning ten lines up\n already does and what `describeFormat` was fixed for.\n\n A BDF+ recording holding nothing but its `BDF Annotations` channel — a label this\n parser recognises by name, beside `EDF Annotations`, and has since annotations were\n read at all — was told it \"contains only EDF+ annotations\", naming a channel it does\n not carry and a format it is not. `--info` two lines above says `BDF+ (continuous)`\n and the channel table names the channel; this warning was the one line disagreeing\n with both.\n */\n message: `This file has no signal channels; it contains only ${isBdf ? 'BDF+' : 'EDF+'} annotations.`,\n /*\n What the file is, not what the run will write. The warning underneath it — raised by\n the conversion rather than by the parser — already answers the second question, in\n those words: \"annotations.csv holds whatever events it carries. channels.csv lists\n signal channels, so it has none to list.\" Two consecutive hints saying that would be\n worse than the one that was missing.\n */\n hint:\n `An ${isBdf ? 'BDF+' : 'EDF+'} file of events and no signal is an ordinary thing: a ` +\n 'scoring file distributed beside the recording it annotates has exactly this shape.',\n });\n }\n\n // A channel declaring zero samples per record has no sampling rate to speak of — it is\n // reported separately as NO_SAMPLES and no file is written for it. Counting its nominal\n // 0 Hz as a rate made a single-rate recording warn that it used \"2 different sampling\n // rates (4 Hz, 0 Hz)\" and claim it was splitting output it never split.\n const rates = new Set(dataSignals.filter((s) => s.samplesPerRecord > 0).map((s) => s.samplingRate));\n if (rates.size > 1) {\n diagnostics.push({\n code: 'MIXED_SAMPLING_RATES',\n severity: 'warning',\n message:\n `Channels use ${counted(rates.size, 'different sampling rate')} ` +\n `(${listed(formatRates([...rates].sort((a, b) => b - a)).map((r) => `${r} Hz`))}).`,\n hint: 'They are written to one file per rate so no channel is resampled.',\n });\n }\n\n return {\n header: {\n version,\n patientId,\n recordingId,\n startDateRaw,\n startTimeRaw,\n startDateTime: resolveStartDateTime(startDateRaw, startTimeRaw, recordingId),\n headerBytes: expectedHeaderBytes,\n declaredHeaderBytes: headerBytes,\n reserved,\n isEdfPlus,\n isBdf,\n continuity,\n declaredRecordCount,\n recordDuration,\n signalCount,\n signals,\n bytesPerSample,\n recordBytes,\n },\n recordCount,\n trailingBytes,\n diagnostics,\n };\n}\n\n/**\n * The recording start as a zone-less wall clock, \"YYYY-MM-DDTHH:MM:SS\".\n *\n * EDF stores the start time as local wall-clock digits with no timezone anywhere in\n * the format. `startDateTime` is built with Date.UTC purely so those digits survive a\n * round trip unshifted, which makes it a carrier for the wall clock rather than a\n * real instant. Serialising it with `toISOString()` would append a Z and assert UTC,\n * and any reader converting to local time would then shift the recording by their own\n * offset: 13:43:04 in the file becomes 08:43:04 in New York. The Z is omitted because\n * the file genuinely does not say which zone it meant.\n */\nexport function formatWallClock(date: Date | null): string | null {\n /*\n `null` is the answer for a recording with no start instant. It was also the answer for\n every other falsy value, because this line used to read `if (!date) return null` and ran\n before the check below.\n\n formatWallClock(0) // null\n formatWallClock(new Date(0)) // \"1970-01-01T00:00:00\"\n\n A millisecond timestamp is the obvious thing to hold beside a `Date` and the obvious thing\n to pass by mistake, and `0` is the epoch — a real instant, answered with the sentence this\n tool uses for a recording whose header has no readable date. `''`, `false` and `NaN` went\n the same way, while a truthy non-Date was refused properly. 0.8.63 gave this function its\n check; the short-circuit above it meant half the values never reached it.\n */\n if (date === null) return null;\n if (!(date instanceof Date)) {\n throw new OptionError(`date must be a Date or null, got ${describeValue(date)}.`);\n }\n /*\n And an unparseable one, which is a date this cannot state rather than a bad argument.\n\n `new Date('the third').toISOString()` is a `RangeError: Invalid time value` out of the\n middle of this function. `null` is what this returns for a recording with no start\n instant, and that is what an invalid Date is: `START_TIME_UNREADABLE` says the same thing\n about the same fact, and metadata.json writes `start_datetime_local: null` for it.\n */\n if (Number.isNaN(date.getTime())) return null;\n return date.toISOString().slice(0, 19);\n}\n\n/**\n * The recording's format, as `--info`, `metadata.json` and `--json` all name it.\n *\n * `\"EDF\"`, `\"BDF\"`, or one of `\"EDF+ (continuous)\"`, `\"EDF+ (discontinuous)\"`,\n * `\"BDF+ (continuous)\"`, `\"BDF+ (discontinuous)\"`. A BDF+ file reports its own spelling even\n * though `continuity` normalises the marker to the `EDF+` form.\n *\n * This said `EDF+ (EDF+D)` and `BDF+ (EDF+C)`, which are not strings it can return — the\n * parenthetical is the word, not the marker. It is a one-line doc comment on a public export,\n * so it is what a TypeScript consumer's editor shows and what `dist/edf/header.d.ts` ships,\n * and the value it describes is `recording.format` in every metadata.json this tool writes.\n * A consumer branching on the tooltip's spelling never matches. Every documentation page had\n * it right; this was the only place that did not.\n */\nexport function describeFormat(header: EdfHeader): string {\n /*\n The argument, which this read two booleans off and asked no questions about.\n\n Both reads are truthiness tests, so anything without them answers `'EDF'` — including the\n `EdfFile` whose `.header` this wants, which is one property away and is how the api page\n writes every other call. `describeFormat(file)` on a discontinuous BDF+ recording returned\n `'EDF'`: not an error, not a fallback, a confident wrong answer about the file in hand.\n\n The same check `makeScaler` got in 0.8.61, for the same reason — an exported function that\n reads fields off an object cannot tell a header from anything else that lacks them.\n */\n if (\n typeof header !== 'object' ||\n header === null ||\n typeof header.isBdf !== 'boolean' ||\n typeof header.isEdfPlus !== 'boolean'\n ) {\n throw new OptionError(`header must be a parsed EDF header, got ${describeValue(header)}.`);\n }\n const base = header.isBdf ? 'BDF' : 'EDF';\n if (!header.isEdfPlus) return base;\n /*\n The third field this reads, which the check above does not ask about.\n\n It decides the word in the parentheses, and the line below treats anything that is not\n `'EDF+D'` as continuous — missing included. So an object carrying the two booleans and\n nothing else came back `\"EDF+ (continuous)\"`: a confident wrong answer about a file,\n which is what that check was added to stop, for the one field it left out.\n\n A parsed header cannot be in this state: `isEdfPlus` *is* `continuity !== null`, so when\n the first is true the second is one of the two markers. Anything else reaching here is\n the argument being the wrong object again.\n */\n if (header.continuity !== 'EDF+C' && header.continuity !== 'EDF+D') {\n throw new OptionError(\n `header.continuity must be \"EDF+C\" or \"EDF+D\" on an EDF+ header, got ` +\n `${describeValue(header.continuity)}. It is what the word in the parentheses reports.`,\n );\n }\n return `${base}+ (${header.continuity === 'EDF+D' ? 'discontinuous' : 'continuous'})`;\n}\n\n/** Render a sampling rate without trailing noise: 256, 0.5, 12.5. */\nexport function formatRate(hz: number): string {\n // A number, like the neighbours. `formatRate(NaN)` came back as the string \"NaN\", and\n // `rateSlug` turned it into \"NaNhz\" — a file name this tool cannot write, handed to a\n // caller the doc comment below describes as \"reaching for the exported slug function to\n // predict a filename\". A rate that is not a number is not a rate.\n /*\n And a negative one, which 0.8.63 left in for the same reason it took NaN out.\n `rateSlug(-1)` answered `-1hz`, so `signals_-1hz.csv` — another name this tool cannot\n write, from the same caller asking the same question.\n\n Nor can a recording produce one to ask about: a rate is a channel's samples per record\n over the record duration, the parser refuses a record duration that is not positive, and\n it refuses a negative sample count outright — \"Signal 0 declares -1 samples per record\".\n Zero and Infinity are left alone, because both are rates a header really can state.\n */\n if (typeof hz !== 'number' || Number.isNaN(hz) || hz < 0) {\n throw new OptionError(`hz must be a sampling rate in hertz, got ${describeValue(hz)}.`);\n }\n if (Number.isInteger(hz)) {\n /*\n The same six decimals, in the notation `toFixed` cannot reach.\n\n Every double past 2^53 is an integer, so this branch takes every large rate — and\n `String` switches to exponent form at 1e21 and carries the full seventeen digits with\n it. Four samples in a record of 1e-300s is 3.9999999999999996e+300, which is exactly the\n float noise the rounding below exists to remove, printed in a `RATE` column of otherwise\n plain numbers and pasted into an output filename by `rateSlug`. Below 1e21 `String` is\n already exact and is left alone, so an integer rate a file can really state — 2^53\n samples in a second — is not rounded to something it is not.\n */\n const text = String(hz);\n return text.includes('e') ? String(Number(hz.toExponential(6))) : text;\n }\n const rounded = Number(hz.toFixed(6));\n // A rate below 5e-7 rounds away to \"0\", which reads as \"this channel has no sampling\n // rate\" and made the mixed-rate warning contradict itself: it announced two different\n // rates and then printed both as \"0 Hz\". Exponent form keeps a real rate legible, and\n // keeps distinct rates distinct in the channel table and in output filenames.\n if (rounded === 0) return hz.toExponential(3);\n return String(rounded);\n}\n\n/**\n * Renders a group of rates so that rates which differ read as differing.\n *\n * `formatRate` rounds to six decimals, which is what keeps an ordinary rate free of\n * float noise — 30 samples in a 0.1-second record is 299.99999999999994 as a double,\n * and belongs on screen as 300. Two rates separated by less than that round to one\n * string, so a file carrying 1e-6 Hz and 1.25e-6 Hz warned that it used \"2 different\n * sampling rates (0.000001 Hz, 0.000001 Hz)\" and named both files the same thing.\n *\n * That is the contradiction the exponent fallback above already removes for rates that\n * round away to zero; this is the same one a step further out. On a collision every rate\n * in the group switches to its shortest exact form, which is unique for distinct values,\n * rather than only the pair that collided — one column in one notation reads better than\n * two.\n */\nexport function formatRates(rates: readonly number[]): string[] {\n // `rates.map` on anything else is a TypeError naming a local of this package; the members\n // are `formatRate`'s business, one line down.\n if (!Array.isArray(rates)) {\n throw new OptionError(`rates must be a list of sampling rates, got ${describeValue(rates)}.`);\n }\n const rounded = rates.map(formatRate);\n const distinct = new Set(rates).size;\n return new Set(rounded).size === distinct ? rounded : rates.map((hz) => String(hz));\n}\n"]}
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
1
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{
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2
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"name": "edf2csv",
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3
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-
"version": "0.9.
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3
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+
"version": "0.9.28",
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4
4
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"description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
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5
5
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"keywords": [
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6
6
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"edf",
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