npm - edf2csv - Versions diffs - 0.7.19 → 0.7.21 - Mend

edf2csv 0.7.19 → 0.7.21

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (7) hide show

package/dist/cli/report.js +10 -2
package/dist/cli/report.js.map +1 -1
package/dist/convert/time-range.js +12 -2
package/dist/convert/time-range.js.map +1 -1
package/dist/edf/annotations.js +15 -1
package/dist/edf/annotations.js.map +1 -1
package/package.json +1 -1

package/dist/cli/report.js CHANGED Viewed

@@ -5,7 +5,7 @@
  * produces exactly what appeared on screen.
  */
 import { describeFormat, formatRates, formatWallClock } from '../edf/header.js';
-import { formatBytes, formatDuration } from '../format/number.js';
+import { fixed, formatBytes, formatDuration } from '../format/number.js';
 import { counted } from '../format/list.js';
 import { withoutFileRateWarning } from '../convert/plan.js';
 import { VERSION } from '../version.js';
@@ -168,7 +168,15 @@ export function formatInfo(file, plan) {
         // In seconds rather than through formatDuration, because this number is meant to be
         // typed back in: `--start` takes `1000s`, and "16m 40s" is not something it accepts.
         // It is also how the empty-window warning renders the window it was given.
-        lines.push(`Timed from ${startsAt.toFixed(3)}s  (first sample; --start and --end use this clock)`);
+        //
+        // Through `fixed` rather than `toFixed`, which switches to exponent notation at 1e21 —
+        // and `--start 1e+21s` is refused by the time parser with "uses an unknown unit \"e\"",
+        // so the one line that says which clock to use handed back a number that clock rejects.
+        // Reachable from a conforming file: an EDF+ onset is plain digits of any length, and a
+        // record duration large enough to keep samples apart at that magnitude is four
+        // characters. `fixed` expands these with BigInt, which is exact past 2^53 where a double
+        // carries no fraction anyway, and is byte-for-byte `toFixed` everywhere else.
+        lines.push(`Timed from ${fixed(startsAt, 3)}s  (first sample; --start and --end use this clock)`);
     }
     lines.push(`Size       ${formatBytes(file.fileSize)}`);
     if (header.patientId)

package/dist/cli/report.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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Human-readable output for the terminal.\n \n Everything here is plain text with no colour codes, so piping to a file or a log\n * produces exactly what appeared on screen.\n /\n\nimport type { Diagnostic } from '../edf/errors.js';\nimport type { EdfFile } from '../edf/reader.js';\nimport { describeFormat, formatRates, formatWallClock } from '../edf/header.js';\nimport { formatBytes, formatDuration } from '../format/number.js';\nimport { counted } from '../format/list.js';\nimport type { ConversionPlan } from '../convert/plan.js';\nimport { withoutFileRateWarning } from '../convert/plan.js';\nimport type { ConvertResult } from '../convert/run.js';\nimport { VERSION } from '../version.js';\n\n/* Where terminal prose wraps. The width --help is written to, and the ANSI default. /\nconst WRAP_COLUMNS = 80;\n\n/* The continuation indent under a `warning: ` / `note: ` prefix. /\nconst HINT_INDENT = ' '.repeat(9);\n\n/\n Greedy word wrap, `indent` on every line including the first.\n \n Only free prose goes through this. The aligned parts of `--info` — the `Format`/`Size`\n * key-value lines and the channel table — are laid out in columns, and re-flowing a column\n * is how you turn a table into a paragraph.\n \n A word wider than the column is left to overrun rather than broken. The long words here\n * are file paths and quoted channel labels, and neither survives being split across lines:\n * the point of printing a path is that it can be copied back out.\n /\nexport function wrap(text: string, indent = '', width = WRAP_COLUMNS): string {\n const lines: string[] = [];\n let line = indent;\n for (const word of text.split(/\\s+/u)) {\n if (word === '') continue;\n if (line === indent) line += word;\n else if (line.length + 1 + word.length <= width) line += ` ${word}`;\n else {\n lines.push(line);\n line = indent + word;\n }\n }\n if (line !== indent) lines.push(line);\n return lines.join('\\n');\n}\n\nfunction table(rows: readonly (readonly string[])[], alignRight: ReadonlySet<number>): string {\n if (rows.length === 0) return '';\n const width: number[] = [];\n for (const row of rows) {\n row.forEach((cell, i) => {\n width[i] = Math.max(width[i] ?? 0, cell.length);\n });\n }\n return rows\n .map((row) =>\n row\n .map((cell, i) => {\n const w = width[i] ?? 0;\n return alignRight.has(i) ? cell.padStart(w) : cell.padEnd(w);\n })\n .join(' ')\n .trimEnd(),\n )\n .join('\\n');\n}\n\n/\n Make header text safe to print to a terminal.\n \n EDF identification fields and channel labels are free text copied verbatim out of the\n * file, and `--info` puts them straight on stdout. A header carrying ANSI escapes could\n * therefore drive the reader's terminal — `\\x1b[2J\\x1b[H` clears the screen and homes the\n * cursor, which is enough to hide the rest of the output or repaint it as something else.\n * Nobody writes an EDF header that way on purpose, which is exactly why a file that does\n * should not be trusted with the terminal.\n \n Control bytes are shown as their escape instead, so a corrupt field stays diagnosable\n * rather than being silently swallowed. This affects display only: `channels.csv` and\n * `metadata.json` still copy the field verbatim, and CSV quoting already makes that safe.\n /\nexport function printable(text: string): string {\n // The control characters are what this function is for, not an oversight in it.\n return text.replace(/[\\u0000-\\u001f\\u007f-\\u009f]/gu, (c) =>\n `\\\\x${c.codePointAt(0)!.toString(16).padStart(2, '0')}`,\n );\n}\n\n/\n The same protection for text that is meant to span lines.\n \n `printable` escapes newlines along with everything else, which is right for a channel\n * label — one has no business containing a line break, and it would break the `--info`\n * table's alignment. It is wrong for a whole message: several are written on two lines,\n * and Node's own option errors run to three. Escaping those turned the break into text:\n \n error: No channel named \"ECQ\". Did you mean \"ECG\"?\\x0aRun with --info to list ...\n \n Each line is escaped on its own, so nothing here gains the ability to drive a terminal.\n * A carriage return is still escaped, so no line can be repainted after it is printed —\n * which is the property that mattered. A newline can only add a line, never overwrite one.\n /\nexport function printableLines(text: string, indent = ''): string {\n return text\n .split('\\n')\n .map((line, index) => {\n const safe = printable(line);\n // The first line is the one that follows `error: ` or `warning: `, so it is the line\n // a log gets grepped for, and it stays whole at whatever width it runs to.\n if (index === 0) return safe;\n\n /\n Callers write the continuation indent one of two ways: most pass it here and leave\n their message lines flush, but the two usage builders bake ` ` into the string\n itself because they are printed without an `error: ` prefix in front. Reading the\n line's own leading space when none was passed keeps both working, and keeps the\n wrap aligned under the same column either way.\n /\n const body = safe.trimStart();\n const pad = indent === '' ? safe.slice(0, safe.length - body.length) : indent;\n\n /\n A continuation that is a command is copied, not read.\n\n `edf2csv -- \"--chanels\"` is the line the unknown-option error ends on, and it exists\n to be pasted back into the shell. Wrapping puts `edf2csv --` on one line and the\n flag on the next, and what gets pasted is half a command. Prose survives being\n re-flowed and a command does not, so the two are told apart rather than being\n treated alike and hoping today's strings stay short.\n /\n if (body.startsWith('edf2csv ')) return pad + body;\n return wrap(body, pad);\n })\n .join('\\n');\n}\n\n/* The `--info` view: what is in this recording, and what would converting it produce. /\nexport function formatInfo(file: EdfFile, plan: ConversionPlan): string {\n const { header } = file;\n const lines: string[] = [];\n\n /\n Escaped, like every other value that came out of the filesystem.\n\n A path is untrusted text: a folder may be named with an ESC byte, and a file name may\n hold a newline on every platform this runs on. The `[n/m]` header a batch prints has\n always escaped it and these two lines did not, so one line of a run reached the terminal\n as `study/esc\\x1b[31mred.edf` and the next as a live colour change — and a name holding a\n newline split `Wrote` across two lines, so the summary reported a path that reads as two.\n NONPRINTABLE_LABEL exists because a header field can carry these bytes; a directory entry\n can carry them just as easily.\n /\n lines.push(`File ${printable(file.path)}`);\n lines.push(`Format ${describeFormat(header)}`);\n lines.push(\n `Recorded ${\n formatWallClock(header.startDateTime)?.replace('T', ' ') ??\n `${printable(header.startDateRaw)} ${printable(header.startTimeRaw)} (unparseable)`\n }`,\n );\n lines.push(\n `Duration ${formatDuration(file.durationSeconds)} (${counted(file.recordCount, 'record')} of ${header.recordDuration}s)`,\n );\n const elapsedSpan = plan.range.recordingEndSeconds - plan.range.recordingStartSeconds;\n if (Math.abs(elapsedSpan - file.durationSeconds) > 1e-9) {\n lines.push(`Time span ${formatDuration(elapsedSpan)} (includes discontinuities)`);\n }\n /\n Where the samples begin, when that is not zero.\n\n 0.4.9 made the first record's timekeeping TAL the point a recording is timed from, so a\n file whose TALs start at +1000 writes `time_s` from 1000.000 and takes `--start` and\n `--end` on that same clock. None of that appeared here: the report said \"Duration 3s\",\n which reads as 0 to 3, and `--start 0 --end 1` then selected nothing and answered with\n \"The window is inside the recording but lands where there is no data ... Run with --info\n to see where the records actually sit\" — pointing at this report, which was the one place\n the number was missing. It is in `plan.range` already and governs the estimate printed\n below; it was simply never shown.\n /\n const startsAt = plan.range.recordingStartSeconds;\n if (Number.isFinite(startsAt) && Math.abs(startsAt) > 1e-9) {\n // In seconds rather than through formatDuration, because this number is meant to be\n // typed back in: `--start` takes `1000s`, and \"16m 40s\" is not something it accepts.\n // It is also how the empty-window warning renders the window it was given.\n lines.push(\n `Timed from ${startsAt.toFixed(3)}s (first sample; --start and --end use this clock)`,\n );\n }\n lines.push(`Size ${formatBytes(file.fileSize)}`);\n if (header.patientId) lines.push(`Patient ${printable(header.patientId)}`);\n if (header.recordingId) lines.push(`Recording ${printable(header.recordingId)}`);\n\n const signals = file.dataSignals;\n lines.push('');\n // The signal count was pluralised but the annotation-channel count was not, so a file\n // carrying two of them read \"2 annotation channel\". EDF+ permits more than one.\n const annotationCount = file.annotationSignals.length;\n const annotationPart =\n annotationCount > 0\n ? ` + ${annotationCount} annotation channel${annotationCount === 1 ? '' : 's'}`\n : '';\n lines.push(\n `Channels ${signals.length} signal${signals.length === 1 ? '' : 's'}${annotationPart}`,\n );\n lines.push('');\n\n const rows: string[][] = [['#', 'COLUMN', 'LABEL', 'UNIT', 'RATE', 'RANGE', 'OUTPUT']];\n const fileFor = new Map<number, string>();\n for (const group of plan.groups) {\n for (const channel of group.channels) fileFor.set(channel.signal.index, group.fileName);\n }\n // Rendered as a group so that two channels recorded at different rates never show the\n // same figure in the RATE column, which is the one thing this table is asked to settle.\n const rateText = formatRates(signals.map((signal) => signal.samplingRate));\n for (const [row, signal] of signals.entries()) {\n rows.push([\n String(signal.index),\n printable(plan.columnNames.get(signal.index) ?? ''),\n printable(signal.label),\n printable(signal.physicalDimension),\n `${rateText[row]} Hz`,\n `${signal.physicalMin} to ${signal.physicalMax}`,\n /\n A channel with no samples was reported as \"(not selected)\", which is a different\n thing and not true when it was named on --channels. `edf2csv rec.edf --info\n --channels unused` said the channel the command asked for had not been chosen, when\n what is actually the case is that the file gives it nothing to convert. The\n NO_SAMPLES warning below the table says so; the table contradicted it.\n /\n fileFor.get(signal.index) ??\n (signal.samplesPerRecord === 0 ? '(no samples)' : '(not selected)'),\n ]);\n }\n lines.push(table(rows, new Set([0])));\n\n lines.push('');\n /\n From here down --info stops laying out columns and starts explaining itself, so from\n here down it wraps. The key-value lines and the channel table above are aligned to each\n other and must not be re-flowed; these are sentences, and the longest of them ran to 156\n columns — which is not a line anyone reads, it is a line a terminal breaks somewhere.\n --help has been written to 80 since it existed and hints joined it in 0.7.1; --info is\n the mode whose whole purpose is being read by a person, and it was the last one guessing.\n /\n if (plan.groups.length > 1) {\n lines.push(\n wrap(\n plan.layout === 'long'\n ? `Sampling rates differ, and the long layout puts them in one table anyway: each row ` +\n `carries its own time, so nothing has to line up. No channel is resampled.`\n : `Sampling rates differ, so channels are written to ${counted(plan.groups.length, 'file')}, one per rate. ` +\n `No channel is resampled.`,\n ),\n );\n }\n /\n The estimate describes the signal tables, and says so when that is not what will be\n written.\n\n Under --annotations-only there are no signal tables, and the line read \"Would write 0\n rows, roughly 0 B.\" for a conversion that goes on to write annotations.csv with three\n events in it. --info exists to say what a conversion will do; asserting it will write\n nothing, when it will write a file, is the one thing it must not do.\n\n How many events there are cannot be answered from the header — the annotation channel has\n to be read record by record, which is the scan --info is for avoiding. So it says which\n file, and that the count is not knowable this cheaply, rather than inventing a zero.\n /\n /\n No signal table to describe, whichever way that came about.\n\n This asked only whether `--annotations-only` had been given. A recording that has no\n signal channels — one holding nothing but EDF+ annotations — has none either, and fell\n through to the estimate line: \"Would write 0 rows, roughly 0 B.\" for a conversion that\n goes on to write an annotations.csv with events in it, beside channels.csv and\n metadata.json. That is the sentence 0.4.51 removed, arriving by the other route.\n /\n if (!plan.writeSignals \|\| plan.groups.length === 0) {\n // Named as they will be written. --info is read to find out what a run leaves behind,\n // and a script that opens the name it was given must find a file there.\n const suffix = plan.gzip ? '.csv.gz' : '.csv';\n lines.push(\n wrap(\n file.annotationSignals.length > 0\n ? `Would write annotations${suffix} and channels${suffix}, and no signal data. How ` +\n 'many events there are cannot be told from the header.'\n : `Would write channels${suffix} and no signal data — and no annotations${suffix} ` +\n 'either, since this recording has no annotation channel.',\n ),\n );\n return lines.join('\\n');\n }\n\n // The estimate counts the characters of the CSV, which is what --gzip then compresses.\n // Reporting it as the size on disk would overstate a compressed conversion several-fold.\n const compressing = plan.gzip;\n lines.push(\n wrap(\n // A window narrow enough to select one sample is an ordinary thing to ask for, and this\n // read \"Would write 1 rows, roughly 22 B.\" — the slip 0.5.74 fixed on the lines above it\n // and missed here, because the recording that test builds never estimates exactly one.\n `Would write ${plan.estimate.rows.toLocaleString('en-US')} ` +\n `${plan.estimate.rows === 1 ? 'row' : 'rows'}, roughly ` +\n `${formatBytes(plan.estimate.bytes)}${compressing ? ' before compression' : ''}.`,\n ),\n );\n\n return lines.join('\\n');\n}\n\n/\n The `--info` view as JSON, for surveying files from a script.\n \n `indent` is 2 for a single recording, matching what this has always printed, and null for\n * a batch — several pretty-printed documents run together are readable by a streaming parser\n * but not by anything that expects one record per line, and a batch is exactly where\n * line-oriented reading is wanted. null rather than undefined because a default parameter\n * takes effect when undefined is passed, which quietly restored the indentation this was\n * meant to drop; JSON.stringify itself wants undefined, so it is translated at the call.\n \n `--info` answers \"what is in this recording and what would converting it cost\", which\n * is exactly the question you want to ask across a directory of hundreds of recordings —\n * and the text table is the wrong shape for that. `--json` previously applied only to\n * conversions, so scripts had to parse the aligned columns or convert files just to learn\n * what was in them.\n \n Field names match `metadata.json` where the two describe the same thing, so a survey and\n * a conversion can be read by the same code.\n /\nexport function infoJson(file: EdfFile, plan: ConversionPlan, indent: number \| null = 2): string {\n const { header } = file;\n const fileFor = new Map<number, string>();\n for (const group of plan.groups) {\n for (const channel of group.channels) fileFor.set(channel.signal.index, group.fileName);\n }\n\n return JSON.stringify(\n {\n tool: TOOL,\n path: file.path,\n bytes: file.fileSize,\n format: describeFormat(header),\n start_datetime_local: formatWallClock(header.startDateTime),\n start_date_raw: header.startDateRaw,\n start_time_raw: header.startTimeRaw,\n patient_id: header.patientId,\n recording_id: header.recordingId,\n data_records: file.recordCount,\n data_records_declared: header.declaredRecordCount,\n record_duration_seconds: header.recordDuration,\n duration_seconds: file.durationSeconds,\n // For a discontinuous file this exceeds duration_seconds by the length of the gaps.\n time_span_seconds: plan.range.recordingEndSeconds - plan.range.recordingStartSeconds,\n // Where `time_s` begins, and the clock `--start` and `--end` are read against. Usually\n // zero; not when the first record's timekeeping TAL puts the recording elsewhere. Both\n // of the fields above are lengths and neither says where that length sits.\n first_sample_seconds: plan.range.recordingStartSeconds,\n annotation_channels: file.annotationSignals.length,\n channels: file.dataSignals.map((signal) => ({\n signal_index: signal.index,\n column: plan.columnNames.get(signal.index) ?? '',\n label: signal.label,\n unit: signal.physicalDimension,\n sampling_rate_hz: signal.samplingRate,\n samples_per_record: signal.samplesPerRecord,\n physical_min: signal.physicalMin,\n physical_max: signal.physicalMax,\n digital_min: signal.digitalMin,\n digital_max: signal.digitalMax,\n transducer: signal.transducer,\n prefiltering: signal.prefiltering,\n output_file: fileFor.get(signal.index) ?? null,\n })),\n /\n Null rather than zero when the run writes no signal table.\n\n The text form has refused to say \"Would write 0 rows, roughly 0 B.\" since 0.4.51,\n because a run that goes on to write an annotations.csv with events in it has not\n written nothing — and it is `--annotations-only`, or a recording holding only\n annotations, that reaches this. The JSON went on saying it to the surface a script\n reads. There is no estimate for a table that does not exist, and null is how this\n document already says that.\n /\n estimate:\n plan.writeSignals && plan.groups.length > 0\n ? {\n rows: plan.estimate.rows,\n // Character count of the CSV. With --gzip the file on disk is smaller than this.\n bytes: plan.estimate.bytes,\n exceeds_spreadsheet_limit: plan.estimate.exceedsSpreadsheetLimit,\n }\n : { rows: null, bytes: null, exceeds_spreadsheet_limit: false },\n // The plan's mixed-rate warning replaces the header parser's, as it does everywhere\n // else. This was the one consumer left out of that when 0.3.2 made the warning follow\n // --channels, so `--info --json` carried it twice: once counting the rates being\n // converted and once counting every rate in the file, with the same code and severity.\n // The file's own first, then the plan's, which is the order the text form prints them\n // in. Concatenating the other way round listed the same warnings about the same\n // recording in two different sequences depending on which form you asked for.\n warnings: withoutFileRateWarning(file.diagnostics)\n .concat(plan.diagnostics)\n .map((d) => ({ code: d.code, severity: d.severity, message: d.message })),\n },\n null,\n indent ?? undefined,\n );\n}\n\n/\n One diagnostic per `warning: ` line, prefixed so warnings are greppable; the hint below it\n * wrapped to the terminal.\n \n The hint has been on its own unprefixed continuation line since these gained hints at all,\n * so grepping for `warning:` never picked it up and wrapping it costs nothing that was being\n * relied on — which is what 0.6.132 got wrong when it left every diagnostic long on the\n * grounds that they are one line each. Half of that is true. The `warning:` head is a line\n * per diagnostic and stays one, at whatever width the message runs to; the hint underneath\n * it is prose addressed to a person reading a terminal, and 17 of them ran past 80 columns,\n * the widest to 180. At that width the second half of the advice is wherever the terminal\n * decided to put it, indented under nothing, and the 9-space rule that says \"this belongs to\n * the warning above\" is lost at exactly the moment there is enough text for it to matter.\n /\nexport function formatDiagnostics(diagnostics: readonly Diagnostic[]): string {\n return diagnostics\n .map((d) => {\n // Diagnostics quote channel labels, which come from the file, so they need the\n // same treatment as the --info table.\n const head = `${d.severity === 'warning' ? 'warning' : 'note'}: ${printable(d.message)}`;\n return d.hint ? `${head}\\n${wrap(printable(d.hint), HINT_INDENT)}` : head;\n })\n .join('\\n');\n}\n\nexport function formatSummary(result: ConvertResult): string {\n const lines: string[] = [];\n const rows: string[][] = [];\n for (const file of result.files) {\n // `.csv.gz` is still a CSV, and its rows are still rows. The suffix test dropped the\n // unit from every line of a --gzip summary, so the numbers stood on their own.\n rows.push([\n ` ${file.name}`,\n file.rows.toLocaleString('en-US'),\n // Singular at one, like every other count this prints: a one-row table is what a\n // narrow window produces, and \"1 rows\" is the same slip 0.5.74 fixed elsewhere.\n /\\.csv(\\.gz)?$/u.test(file.name) ? (file.rows === 1 ? 'row' : 'rows') : '',\n ]);\n }\n lines.push(`Wrote ${printable(result.outputDir)}`); // Escaped; see the File line above.\n lines.push(table(rows, new Set([1])));\n lines.push(`Done in ${(result.elapsedMs / 1000).toFixed(1)}s.`);\n return lines.join('\\n');\n}\n\n/\n Which version produced this record.\n \n `metadata.json` has carried it since the file existed, because a conversion should be\n * reproducible later. The two JSON streams did not, and they are the ones most likely to\n * outlive the run: `--json` exists to be piped into something, logged, or committed beside a\n * result, where the question a year on is which release's field names and rounding these are.\n * The same shape as metadata.json's, so a consumer reads one field either way.\n */\nconst TOOL = { name: 'edf2csv', version: VERSION } as const;\n\nexport function summaryJson(result: ConvertResult, indent: number \| null = 2): string {\n return JSON.stringify(\n {\n tool: TOOL,\n output_dir: result.outputDir,\n files: result.files,\n annotations: result.annotationCount,\n duration_seconds: result.file.durationSeconds,\n records: result.file.recordCount,\n elapsed_ms: result.elapsedMs,\n warnings: result.diagnostics.map((d) => ({ code: d.code, severity: d.severity, message: d.message })),\n },\n null,\n indent ?? undefined,\n );\n}\n"]}
1	+ 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Human-readable output for the terminal.\n \n Everything here is plain text with no colour codes, so piping to a file or a log\n * produces exactly what appeared on screen.\n /\n\nimport type { Diagnostic } from '../edf/errors.js';\nimport type { EdfFile } from '../edf/reader.js';\nimport { describeFormat, formatRates, formatWallClock } from '../edf/header.js';\nimport { fixed, formatBytes, formatDuration } from '../format/number.js';\nimport { counted } from '../format/list.js';\nimport type { ConversionPlan } from '../convert/plan.js';\nimport { withoutFileRateWarning } from '../convert/plan.js';\nimport type { ConvertResult } from '../convert/run.js';\nimport { VERSION } from '../version.js';\n\n/* Where terminal prose wraps. The width --help is written to, and the ANSI default. /\nconst WRAP_COLUMNS = 80;\n\n/* The continuation indent under a `warning: ` / `note: ` prefix. /\nconst HINT_INDENT = ' '.repeat(9);\n\n/\n Greedy word wrap, `indent` on every line including the first.\n \n Only free prose goes through this. The aligned parts of `--info` — the `Format`/`Size`\n * key-value lines and the channel table — are laid out in columns, and re-flowing a column\n * is how you turn a table into a paragraph.\n \n A word wider than the column is left to overrun rather than broken. The long words here\n * are file paths and quoted channel labels, and neither survives being split across lines:\n * the point of printing a path is that it can be copied back out.\n /\nexport function wrap(text: string, indent = '', width = WRAP_COLUMNS): string {\n const lines: string[] = [];\n let line = indent;\n for (const word of text.split(/\\s+/u)) {\n if (word === '') continue;\n if (line === indent) line += word;\n else if (line.length + 1 + word.length <= width) line += ` ${word}`;\n else {\n lines.push(line);\n line = indent + word;\n }\n }\n if (line !== indent) lines.push(line);\n return lines.join('\\n');\n}\n\nfunction table(rows: readonly (readonly string[])[], alignRight: ReadonlySet<number>): string {\n if (rows.length === 0) return '';\n const width: number[] = [];\n for (const row of rows) {\n row.forEach((cell, i) => {\n width[i] = Math.max(width[i] ?? 0, cell.length);\n });\n }\n return rows\n .map((row) =>\n row\n .map((cell, i) => {\n const w = width[i] ?? 0;\n return alignRight.has(i) ? cell.padStart(w) : cell.padEnd(w);\n })\n .join(' ')\n .trimEnd(),\n )\n .join('\\n');\n}\n\n/\n Make header text safe to print to a terminal.\n \n EDF identification fields and channel labels are free text copied verbatim out of the\n * file, and `--info` puts them straight on stdout. A header carrying ANSI escapes could\n * therefore drive the reader's terminal — `\\x1b[2J\\x1b[H` clears the screen and homes the\n * cursor, which is enough to hide the rest of the output or repaint it as something else.\n * Nobody writes an EDF header that way on purpose, which is exactly why a file that does\n * should not be trusted with the terminal.\n \n Control bytes are shown as their escape instead, so a corrupt field stays diagnosable\n * rather than being silently swallowed. This affects display only: `channels.csv` and\n * `metadata.json` still copy the field verbatim, and CSV quoting already makes that safe.\n /\nexport function printable(text: string): string {\n // The control characters are what this function is for, not an oversight in it.\n return text.replace(/[\\u0000-\\u001f\\u007f-\\u009f]/gu, (c) =>\n `\\\\x${c.codePointAt(0)!.toString(16).padStart(2, '0')}`,\n );\n}\n\n/\n The same protection for text that is meant to span lines.\n \n `printable` escapes newlines along with everything else, which is right for a channel\n * label — one has no business containing a line break, and it would break the `--info`\n * table's alignment. It is wrong for a whole message: several are written on two lines,\n * and Node's own option errors run to three. Escaping those turned the break into text:\n \n error: No channel named \"ECQ\". Did you mean \"ECG\"?\\x0aRun with --info to list ...\n \n Each line is escaped on its own, so nothing here gains the ability to drive a terminal.\n * A carriage return is still escaped, so no line can be repainted after it is printed —\n * which is the property that mattered. A newline can only add a line, never overwrite one.\n /\nexport function printableLines(text: string, indent = ''): string {\n return text\n .split('\\n')\n .map((line, index) => {\n const safe = printable(line);\n // The first line is the one that follows `error: ` or `warning: `, so it is the line\n // a log gets grepped for, and it stays whole at whatever width it runs to.\n if (index === 0) return safe;\n\n /\n Callers write the continuation indent one of two ways: most pass it here and leave\n their message lines flush, but the two usage builders bake ` ` into the string\n itself because they are printed without an `error: ` prefix in front. Reading the\n line's own leading space when none was passed keeps both working, and keeps the\n wrap aligned under the same column either way.\n /\n const body = safe.trimStart();\n const pad = indent === '' ? safe.slice(0, safe.length - body.length) : indent;\n\n /\n A continuation that is a command is copied, not read.\n\n `edf2csv -- \"--chanels\"` is the line the unknown-option error ends on, and it exists\n to be pasted back into the shell. Wrapping puts `edf2csv --` on one line and the\n flag on the next, and what gets pasted is half a command. Prose survives being\n re-flowed and a command does not, so the two are told apart rather than being\n treated alike and hoping today's strings stay short.\n /\n if (body.startsWith('edf2csv ')) return pad + body;\n return wrap(body, pad);\n })\n .join('\\n');\n}\n\n/* The `--info` view: what is in this recording, and what would converting it produce. /\nexport function formatInfo(file: EdfFile, plan: ConversionPlan): string {\n const { header } = file;\n const lines: string[] = [];\n\n /\n Escaped, like every other value that came out of the filesystem.\n\n A path is untrusted text: a folder may be named with an ESC byte, and a file name may\n hold a newline on every platform this runs on. The `[n/m]` header a batch prints has\n always escaped it and these two lines did not, so one line of a run reached the terminal\n as `study/esc\\x1b[31mred.edf` and the next as a live colour change — and a name holding a\n newline split `Wrote` across two lines, so the summary reported a path that reads as two.\n NONPRINTABLE_LABEL exists because a header field can carry these bytes; a directory entry\n can carry them just as easily.\n /\n lines.push(`File ${printable(file.path)}`);\n lines.push(`Format ${describeFormat(header)}`);\n lines.push(\n `Recorded ${\n formatWallClock(header.startDateTime)?.replace('T', ' ') ??\n `${printable(header.startDateRaw)} ${printable(header.startTimeRaw)} (unparseable)`\n }`,\n );\n lines.push(\n `Duration ${formatDuration(file.durationSeconds)} (${counted(file.recordCount, 'record')} of ${header.recordDuration}s)`,\n );\n const elapsedSpan = plan.range.recordingEndSeconds - plan.range.recordingStartSeconds;\n if (Math.abs(elapsedSpan - file.durationSeconds) > 1e-9) {\n lines.push(`Time span ${formatDuration(elapsedSpan)} (includes discontinuities)`);\n }\n /\n Where the samples begin, when that is not zero.\n\n 0.4.9 made the first record's timekeeping TAL the point a recording is timed from, so a\n file whose TALs start at +1000 writes `time_s` from 1000.000 and takes `--start` and\n `--end` on that same clock. None of that appeared here: the report said \"Duration 3s\",\n which reads as 0 to 3, and `--start 0 --end 1` then selected nothing and answered with\n \"The window is inside the recording but lands where there is no data ... Run with --info\n to see where the records actually sit\" — pointing at this report, which was the one place\n the number was missing. It is in `plan.range` already and governs the estimate printed\n below; it was simply never shown.\n /\n const startsAt = plan.range.recordingStartSeconds;\n if (Number.isFinite(startsAt) && Math.abs(startsAt) > 1e-9) {\n // In seconds rather than through formatDuration, because this number is meant to be\n // typed back in: `--start` takes `1000s`, and \"16m 40s\" is not something it accepts.\n // It is also how the empty-window warning renders the window it was given.\n //\n // Through `fixed` rather than `toFixed`, which switches to exponent notation at 1e21 —\n // and `--start 1e+21s` is refused by the time parser with \"uses an unknown unit \\\"e\\\"\",\n // so the one line that says which clock to use handed back a number that clock rejects.\n // Reachable from a conforming file: an EDF+ onset is plain digits of any length, and a\n // record duration large enough to keep samples apart at that magnitude is four\n // characters. `fixed` expands these with BigInt, which is exact past 2^53 where a double\n // carries no fraction anyway, and is byte-for-byte `toFixed` everywhere else.\n lines.push(\n `Timed from ${fixed(startsAt, 3)}s (first sample; --start and --end use this clock)`,\n );\n }\n lines.push(`Size ${formatBytes(file.fileSize)}`);\n if (header.patientId) lines.push(`Patient ${printable(header.patientId)}`);\n if (header.recordingId) lines.push(`Recording ${printable(header.recordingId)}`);\n\n const signals = file.dataSignals;\n lines.push('');\n // The signal count was pluralised but the annotation-channel count was not, so a file\n // carrying two of them read \"2 annotation channel\". EDF+ permits more than one.\n const annotationCount = file.annotationSignals.length;\n const annotationPart =\n annotationCount > 0\n ? ` + ${annotationCount} annotation channel${annotationCount === 1 ? '' : 's'}`\n : '';\n lines.push(\n `Channels ${signals.length} signal${signals.length === 1 ? '' : 's'}${annotationPart}`,\n );\n lines.push('');\n\n const rows: string[][] = [['#', 'COLUMN', 'LABEL', 'UNIT', 'RATE', 'RANGE', 'OUTPUT']];\n const fileFor = new Map<number, string>();\n for (const group of plan.groups) {\n for (const channel of group.channels) fileFor.set(channel.signal.index, group.fileName);\n }\n // Rendered as a group so that two channels recorded at different rates never show the\n // same figure in the RATE column, which is the one thing this table is asked to settle.\n const rateText = formatRates(signals.map((signal) => signal.samplingRate));\n for (const [row, signal] of signals.entries()) {\n rows.push([\n String(signal.index),\n printable(plan.columnNames.get(signal.index) ?? ''),\n printable(signal.label),\n printable(signal.physicalDimension),\n `${rateText[row]} Hz`,\n `${signal.physicalMin} to ${signal.physicalMax}`,\n /\n A channel with no samples was reported as \"(not selected)\", which is a different\n thing and not true when it was named on --channels. `edf2csv rec.edf --info\n --channels unused` said the channel the command asked for had not been chosen, when\n what is actually the case is that the file gives it nothing to convert. The\n NO_SAMPLES warning below the table says so; the table contradicted it.\n /\n fileFor.get(signal.index) ??\n (signal.samplesPerRecord === 0 ? '(no samples)' : '(not selected)'),\n ]);\n }\n lines.push(table(rows, new Set([0])));\n\n lines.push('');\n /\n From here down --info stops laying out columns and starts explaining itself, so from\n here down it wraps. The key-value lines and the channel table above are aligned to each\n other and must not be re-flowed; these are sentences, and the longest of them ran to 156\n columns — which is not a line anyone reads, it is a line a terminal breaks somewhere.\n --help has been written to 80 since it existed and hints joined it in 0.7.1; --info is\n the mode whose whole purpose is being read by a person, and it was the last one guessing.\n /\n if (plan.groups.length > 1) {\n lines.push(\n wrap(\n plan.layout === 'long'\n ? `Sampling rates differ, and the long layout puts them in one table anyway: each row ` +\n `carries its own time, so nothing has to line up. No channel is resampled.`\n : `Sampling rates differ, so channels are written to ${counted(plan.groups.length, 'file')}, one per rate. ` +\n `No channel is resampled.`,\n ),\n );\n }\n /\n The estimate describes the signal tables, and says so when that is not what will be\n written.\n\n Under --annotations-only there are no signal tables, and the line read \"Would write 0\n rows, roughly 0 B.\" for a conversion that goes on to write annotations.csv with three\n events in it. --info exists to say what a conversion will do; asserting it will write\n nothing, when it will write a file, is the one thing it must not do.\n\n How many events there are cannot be answered from the header — the annotation channel has\n to be read record by record, which is the scan --info is for avoiding. So it says which\n file, and that the count is not knowable this cheaply, rather than inventing a zero.\n /\n /\n No signal table to describe, whichever way that came about.\n\n This asked only whether `--annotations-only` had been given. A recording that has no\n signal channels — one holding nothing but EDF+ annotations — has none either, and fell\n through to the estimate line: \"Would write 0 rows, roughly 0 B.\" for a conversion that\n goes on to write an annotations.csv with events in it, beside channels.csv and\n metadata.json. That is the sentence 0.4.51 removed, arriving by the other route.\n /\n if (!plan.writeSignals \|\| plan.groups.length === 0) {\n // Named as they will be written. --info is read to find out what a run leaves behind,\n // and a script that opens the name it was given must find a file there.\n const suffix = plan.gzip ? '.csv.gz' : '.csv';\n lines.push(\n wrap(\n file.annotationSignals.length > 0\n ? `Would write annotations${suffix} and channels${suffix}, and no signal data. How ` +\n 'many events there are cannot be told from the header.'\n : `Would write channels${suffix} and no signal data — and no annotations${suffix} ` +\n 'either, since this recording has no annotation channel.',\n ),\n );\n return lines.join('\\n');\n }\n\n // The estimate counts the characters of the CSV, which is what --gzip then compresses.\n // Reporting it as the size on disk would overstate a compressed conversion several-fold.\n const compressing = plan.gzip;\n lines.push(\n wrap(\n // A window narrow enough to select one sample is an ordinary thing to ask for, and this\n // read \"Would write 1 rows, roughly 22 B.\" — the slip 0.5.74 fixed on the lines above it\n // and missed here, because the recording that test builds never estimates exactly one.\n `Would write ${plan.estimate.rows.toLocaleString('en-US')} ` +\n `${plan.estimate.rows === 1 ? 'row' : 'rows'}, roughly ` +\n `${formatBytes(plan.estimate.bytes)}${compressing ? ' before compression' : ''}.`,\n ),\n );\n\n return lines.join('\\n');\n}\n\n/\n The `--info` view as JSON, for surveying files from a script.\n \n `indent` is 2 for a single recording, matching what this has always printed, and null for\n * a batch — several pretty-printed documents run together are readable by a streaming parser\n * but not by anything that expects one record per line, and a batch is exactly where\n * line-oriented reading is wanted. null rather than undefined because a default parameter\n * takes effect when undefined is passed, which quietly restored the indentation this was\n * meant to drop; JSON.stringify itself wants undefined, so it is translated at the call.\n \n `--info` answers \"what is in this recording and what would converting it cost\", which\n * is exactly the question you want to ask across a directory of hundreds of recordings —\n * and the text table is the wrong shape for that. `--json` previously applied only to\n * conversions, so scripts had to parse the aligned columns or convert files just to learn\n * what was in them.\n \n Field names match `metadata.json` where the two describe the same thing, so a survey and\n * a conversion can be read by the same code.\n /\nexport function infoJson(file: EdfFile, plan: ConversionPlan, indent: number \| null = 2): string {\n const { header } = file;\n const fileFor = new Map<number, string>();\n for (const group of plan.groups) {\n for (const channel of group.channels) fileFor.set(channel.signal.index, group.fileName);\n }\n\n return JSON.stringify(\n {\n tool: TOOL,\n path: file.path,\n bytes: file.fileSize,\n format: describeFormat(header),\n start_datetime_local: formatWallClock(header.startDateTime),\n start_date_raw: header.startDateRaw,\n start_time_raw: header.startTimeRaw,\n patient_id: header.patientId,\n recording_id: header.recordingId,\n data_records: file.recordCount,\n data_records_declared: header.declaredRecordCount,\n record_duration_seconds: header.recordDuration,\n duration_seconds: file.durationSeconds,\n // For a discontinuous file this exceeds duration_seconds by the length of the gaps.\n time_span_seconds: plan.range.recordingEndSeconds - plan.range.recordingStartSeconds,\n // Where `time_s` begins, and the clock `--start` and `--end` are read against. Usually\n // zero; not when the first record's timekeeping TAL puts the recording elsewhere. Both\n // of the fields above are lengths and neither says where that length sits.\n first_sample_seconds: plan.range.recordingStartSeconds,\n annotation_channels: file.annotationSignals.length,\n channels: file.dataSignals.map((signal) => ({\n signal_index: signal.index,\n column: plan.columnNames.get(signal.index) ?? '',\n label: signal.label,\n unit: signal.physicalDimension,\n sampling_rate_hz: signal.samplingRate,\n samples_per_record: signal.samplesPerRecord,\n physical_min: signal.physicalMin,\n physical_max: signal.physicalMax,\n digital_min: signal.digitalMin,\n digital_max: signal.digitalMax,\n transducer: signal.transducer,\n prefiltering: signal.prefiltering,\n output_file: fileFor.get(signal.index) ?? null,\n })),\n /\n Null rather than zero when the run writes no signal table.\n\n The text form has refused to say \"Would write 0 rows, roughly 0 B.\" since 0.4.51,\n because a run that goes on to write an annotations.csv with events in it has not\n written nothing — and it is `--annotations-only`, or a recording holding only\n annotations, that reaches this. The JSON went on saying it to the surface a script\n reads. There is no estimate for a table that does not exist, and null is how this\n document already says that.\n /\n estimate:\n plan.writeSignals && plan.groups.length > 0\n ? {\n rows: plan.estimate.rows,\n // Character count of the CSV. With --gzip the file on disk is smaller than this.\n bytes: plan.estimate.bytes,\n exceeds_spreadsheet_limit: plan.estimate.exceedsSpreadsheetLimit,\n }\n : { rows: null, bytes: null, exceeds_spreadsheet_limit: false },\n // The plan's mixed-rate warning replaces the header parser's, as it does everywhere\n // else. This was the one consumer left out of that when 0.3.2 made the warning follow\n // --channels, so `--info --json` carried it twice: once counting the rates being\n // converted and once counting every rate in the file, with the same code and severity.\n // The file's own first, then the plan's, which is the order the text form prints them\n // in. Concatenating the other way round listed the same warnings about the same\n // recording in two different sequences depending on which form you asked for.\n warnings: withoutFileRateWarning(file.diagnostics)\n .concat(plan.diagnostics)\n .map((d) => ({ code: d.code, severity: d.severity, message: d.message })),\n },\n null,\n indent ?? undefined,\n );\n}\n\n/\n One diagnostic per `warning: ` line, prefixed so warnings are greppable; the hint below it\n * wrapped to the terminal.\n \n The hint has been on its own unprefixed continuation line since these gained hints at all,\n * so grepping for `warning:` never picked it up and wrapping it costs nothing that was being\n * relied on — which is what 0.6.132 got wrong when it left every diagnostic long on the\n * grounds that they are one line each. Half of that is true. The `warning:` head is a line\n * per diagnostic and stays one, at whatever width the message runs to; the hint underneath\n * it is prose addressed to a person reading a terminal, and 17 of them ran past 80 columns,\n * the widest to 180. At that width the second half of the advice is wherever the terminal\n * decided to put it, indented under nothing, and the 9-space rule that says \"this belongs to\n * the warning above\" is lost at exactly the moment there is enough text for it to matter.\n /\nexport function formatDiagnostics(diagnostics: readonly Diagnostic[]): string {\n return diagnostics\n .map((d) => {\n // Diagnostics quote channel labels, which come from the file, so they need the\n // same treatment as the --info table.\n const head = `${d.severity === 'warning' ? 'warning' : 'note'}: ${printable(d.message)}`;\n return d.hint ? `${head}\\n${wrap(printable(d.hint), HINT_INDENT)}` : head;\n })\n .join('\\n');\n}\n\nexport function formatSummary(result: ConvertResult): string {\n const lines: string[] = [];\n const rows: string[][] = [];\n for (const file of result.files) {\n // `.csv.gz` is still a CSV, and its rows are still rows. The suffix test dropped the\n // unit from every line of a --gzip summary, so the numbers stood on their own.\n rows.push([\n ` ${file.name}`,\n file.rows.toLocaleString('en-US'),\n // Singular at one, like every other count this prints: a one-row table is what a\n // narrow window produces, and \"1 rows\" is the same slip 0.5.74 fixed elsewhere.\n /\\.csv(\\.gz)?$/u.test(file.name) ? (file.rows === 1 ? 'row' : 'rows') : '',\n ]);\n }\n lines.push(`Wrote ${printable(result.outputDir)}`); // Escaped; see the File line above.\n lines.push(table(rows, new Set([1])));\n lines.push(`Done in ${(result.elapsedMs / 1000).toFixed(1)}s.`);\n return lines.join('\\n');\n}\n\n/\n Which version produced this record.\n \n `metadata.json` has carried it since the file existed, because a conversion should be\n * reproducible later. The two JSON streams did not, and they are the ones most likely to\n * outlive the run: `--json` exists to be piped into something, logged, or committed beside a\n * result, where the question a year on is which release's field names and rounding these are.\n * The same shape as metadata.json's, so a consumer reads one field either way.\n */\nconst TOOL = { name: 'edf2csv', version: VERSION } as const;\n\nexport function summaryJson(result: ConvertResult, indent: number \| null = 2): string {\n return JSON.stringify(\n {\n tool: TOOL,\n output_dir: result.outputDir,\n files: result.files,\n annotations: result.annotationCount,\n duration_seconds: result.file.durationSeconds,\n records: result.file.recordCount,\n elapsed_ms: result.elapsedMs,\n warnings: result.diagnostics.map((d) => ({ code: d.code, severity: d.severity, message: d.message })),\n },\n null,\n indent ?? undefined,\n );\n}\n"]}

package/dist/convert/time-range.js CHANGED Viewed

@@ -6,7 +6,7 @@
  * reading off a clock. All three are accepted; anything ambiguous is rejected with
  * a message that shows the forms that work.
  */
-import { formatDuration } from '../format/number.js';
+import { fixed, formatDuration } from '../format/number.js';
 export class TimeRangeError extends Error {
     constructor(message) {
         super(message);
@@ -328,6 +328,16 @@ function quoted(text, seconds) {
     return text === undefined ? formatSeconds(seconds) : `"${text}"`;
 }
 function formatSeconds(seconds) {
-    return `${Number(seconds.toFixed(3))}s`;
+    /*
+      The same 1e21 cliff, in the bounds this message hands back.
+      `--start "9e21"` was answered with "is at or past the end of this 3e+21s recording, which
+      runs from 1e+21s to 4e+21s" — a sentence whose whole purpose is to say what window there
+      is to ask for, ending in two tokens the parser refuses: `--start 1e+21s` is "uses an
+      unknown unit \"e\"". `Number(...)` was here to drop the trailing zeros, and it also
+      re-introduced the exponent form that `toFixed` had produced.
+    */
+    const text = fixed(seconds, 3);
+    return `${text.includes('.') ? text.replace(/\.?0+$/u, '') : text}s`;
 }
 //# sourceMappingURL=time-range.js.map

package/dist/convert/time-range.js.map CHANGED Viewed

	@@ -1 +1 @@
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Parsing for the time-range options.\n \n Researchers write offsets in whatever form is natural for the recording in front\n * of them: seconds for a short ECG strip, `30m` into a sleep study, `01:23:45` when\n * reading off a clock. All three are accepted; anything ambiguous is rejected with\n * a message that shows the forms that work.\n /\n\nimport { formatDuration } from '../format/number.js';\n\nexport class TimeRangeError extends Error {\n constructor(message: string) {\n super(message);\n this.name = 'TimeRangeError';\n }\n}\n\nconst UNIT_SECONDS: Record<string, number> = {\n h: 3600,\n hr: 3600,\n hrs: 3600,\n hour: 3600,\n hours: 3600,\n m: 60,\n min: 60,\n mins: 60,\n minute: 60,\n minutes: 60,\n s: 1,\n sec: 1,\n secs: 1,\n second: 1,\n seconds: 1,\n ms: 0.001,\n};\n\nconst CLOCK = /^(?:(\\d+):)?(\\d{1,2}):(\\d{1,2}(?:\\.\\d+)?)$/u;\nconst UNIT_TOKEN = /(\\d+(?:\\.\\d+)?)\\s([a-z]+)/giu;\n\n/*\n Parse a duration or offset into seconds.\n \n Accepted: `90`, `90s`, `5m`, `1h30m`, `1h 30m 15s`, `00:30:00`, `30:00`, `250ms`.\n \n `allowNegative` is for the two options that name a position rather than a length.\n \n A recording is timed from its first record's timekeeping annotation, and nothing obliges that\n * to sit at or after zero: a file whose records run from -100 s to -97 s is one this tool reads,\n * times from -100, and describes with\n \n Timed from -100.000s (first sample; --start and --end use this clock)\n \n That line says the number can be typed straight back in, and it could not be. Every offset\n * such a recording has came back as \"not a time I understand\", so its whole clock was\n * unreachable and no window of it could be converted at all — the one file shape where a\n * window is refused for naming a moment the recording actually contains.\n \n A length below zero is still a different thing, and `--duration` still refuses one.\n /\nexport function parseTimeSpec(input: string, optionName: string, allowNegative = false): number {\n const trimmed = input.trim().toLowerCase();\n if (trimmed === '') {\n throw new TimeRangeError(`${optionName} is empty. Try a value like 30s, 5m, or 00:30:00.`);\n }\n\n /\n The sign is read off the front and applied to the whole value, so `-1h30m` is an hour and a\n half before the origin rather than an hour before it and half an hour after.\n\n Nothing may sit between the sign and the number, and a leading `+` is still refused: every\n other number this tool takes is refused when written in a form nobody types, and `+5` is\n exactly what `--decimals` and `--jobs` reject one flag over.\n /\n const negative = trimmed.startsWith('-');\n const text = negative ? trimmed.slice(1) : trimmed;\n const signed = (seconds: number): number =>\n assertFinite(negative ? -seconds : seconds, optionName, input, allowNegative);\n\n // Bare number means seconds.\n if (/^\\d+(?:\\.\\d+)?$/u.test(text)) return signed(Number(text));\n\n // Clock form: hh:mm:ss or mm:ss.\n const clock = CLOCK.exec(text);\n if (clock) {\n const hours = clock[1] === undefined ? 0 : Number(clock[1]);\n const minutes = Number(clock[2]);\n const seconds = Number(clock[3]);\n if (minutes >= 60 \|\| seconds >= 60) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" has a minutes or seconds field of 60 or more.`,\n );\n }\n return signed(hours 3600 + minutes * 60 + seconds);\n }\n\n // Unit form: 1h30m, 5 min, 250ms.\n UNIT_TOKEN.lastIndex = 0;\n let total = 0;\n let matched = 0;\n let consumed = 0;\n let match: RegExpExecArray \| null;\n // Which units have already been seen, so a repeat can be rejected rather than added.\n const seen = new Set<number>();\n while ((match = UNIT_TOKEN.exec(text)) !== null) {\n const amount = Number(match[1]);\n const unit = match[2] ?? '';\n const scale = UNIT_SECONDS[unit];\n if (scale === undefined) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" uses an unknown unit \"${unit}\". Use h, m, s, or ms.`,\n );\n }\n\n // \"1h1h\" is a typo, not a request for two hours. Summing repeated units silently\n // turned a slip into a plausible window that was quietly the wrong length. Units are\n // keyed by their scale so the aliases collapse together: \"1h30min20m\" is caught too.\n if (seen.has(scale)) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" gives the same unit twice. ` +\n `Combine each unit once, as in 1h30m.`,\n );\n }\n seen.add(scale);\n\n total += amount * scale;\n matched++;\n consumed += match[0].length;\n }\n\n // Reject partially-understood input like \"5x\" or \"1h banana\".\n if (matched === 0 \|\| consumed !== text.replace(/\\s+/gu, '').length) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" is not a time I understand. ` +\n `Try 30s, 5m, 1h30m, 00:30:00, or a plain number of seconds.`,\n );\n }\n\n return signed(total);\n}\n\nfunction assertFinite(\n value: number,\n optionName: string,\n input: string,\n allowNegative: boolean,\n): number {\n if (!Number.isFinite(value) \|\| (!allowNegative && value < 0)) {\n throw new TimeRangeError(`${optionName} \"${input}\" is not a valid non-negative time.`);\n }\n return value;\n}\n\nexport interface ResolvedRange {\n /** Inclusive start, in seconds from the beginning of the recording. /\n startSeconds: number;\n /* Exclusive end, in seconds. /\n endSeconds: number;\n /* First data record touching the window. /\n startRecord: number;\n /* One past the last data record touching the window. /\n endRecord: number;\n /* True when the window covers the whole recording. /\n isWholeRecording: boolean;\n /* Earliest record start, including EDF+D timing gaps. /\n recordingStartSeconds: number;\n /* End of the latest record, including EDF+D timing gaps. /\n recordingEndSeconds: number;\n}\n\n/\n Slack for comparisons at sample/window boundaries.\n \n A nanosecond is far below any real sampling interval — 20 kHz is 50 microseconds — so it\n * absorbs the arithmetic error in `recordStart + sample / rate` without reaching a\n * neighbouring sample.\n /\nexport const BOUNDARY_TOLERANCE = 1e-9;\n\n/\n The slack to use for a channel sampled this often.\n \n Never as much as half a sample interval, because slack that reaches the next sample stops\n * being slack. A fixed nanosecond was applied whatever the rate, and the format does not\n * oblige the interval to be larger than it: EDF's record duration is an 8-character field\n * that accepts `1e-9`. A recording of two 1 ns records holding ten samples each wrote ten of\n * its twenty rows — the window ends at 2e-9, the comparison asked for `time < 2e-9 - 1e-9`,\n * and the entire second record failed it. Exit 0, no warning, half the samples gone.\n /\nexport function toleranceFor(rate: number): number {\n if (!(rate > 0) \|\| !Number.isFinite(rate)) return BOUNDARY_TOLERANCE;\n return Math.min(BOUNDARY_TOLERANCE, 1 / rate / 2);\n}\n\n/* Match the exact half-open boundary rules used while writing signal rows. /\nexport function sampleTimeIsInRange(\n time: number,\n startSeconds: number,\n endSeconds: number,\n tolerance: number = BOUNDARY_TOLERANCE,\n): boolean {\n return time >= startSeconds - tolerance && time < endSeconds - tolerance;\n}\n\n/* Count samples from one record that fall inside a half-open requested window. /\nexport function countSamplesInRange(options: {\n recordStart: number;\n rate: number;\n samplesPerRecord: number;\n startSeconds: number;\n endSeconds: number;\n}): number {\n const slack = toleranceFor(options.rate);\n const lower = Math.ceil(\n (options.startSeconds - slack - options.recordStart) options.rate,\n );\n const upper = Math.ceil(\n (options.endSeconds - slack - options.recordStart) * options.rate,\n );\n const first = Math.max(0, Math.min(options.samplesPerRecord, lower));\n const last = Math.max(0, Math.min(options.samplesPerRecord, upper));\n return Math.max(0, last - first);\n}\n\n/*\n Whether two instants differ only by the arithmetic that produced them.\n \n A relative epsilon, because the gap between doubles grows with magnitude — the same shape\n * the long layout uses to decide two sample times are one instant. Well below any real sample\n * interval, and well above the rounding that two routes to one quantity produce: a recording's\n * length is `recordCount * recordDuration`, which for 6003 records of 0.1s is not the 600.3 it\n * prints as.\n /\nfunction sameInstant(a: number, b: number): boolean {\n return Math.abs(a - b) <= Math.max(Math.abs(a), Math.abs(b)) 1e-12;\n}\n\n/*\n Turn a requested window into both an exact time span and the record range that\n * contains it. Records are the unit the file can be read in; the exact span is what\n * decides which samples inside those records are actually written.\n /\nexport function resolveRange(options: {\n start?: number \| undefined;\n /* The `--start` value exactly as typed, quoted back in the past-the-end error. /\n startText?: string \| undefined;\n duration?: number \| undefined;\n end?: number \| undefined;\n /* The `--end` value exactly as typed, quoted back in the window error. /\n endText?: string \| undefined;\n recordDuration: number;\n recordCount: number;\n /\n True start time of each data record, for discontinuous files. When absent,\n * records are assumed to sit end to end.\n /\n recordStarts?: Float64Array \| null \| undefined;\n}): ResolvedRange {\n // For a continuous file the recording spans recordCount recordDuration. A\n // discontinuous one does not: a 10-second recording with a 95-second gap in the\n // middle still ends at 105 seconds. Deriving the span from the records' real\n // positions is what stops a requested window from being clipped back to the\n // amount of data in the file and silently discarding everything past it.\n const { earliest, latest } = span(options.recordStarts, options.recordCount, options.recordDuration);\n\n if (options.duration !== undefined && options.end !== undefined) {\n throw new TimeRangeError('Use either --duration or --end, not both.');\n }\n\n const startSeconds = options.start ?? earliest;\n\n let endSeconds: number;\n if (options.duration !== undefined) endSeconds = startSeconds + options.duration;\n else if (options.end !== undefined) endSeconds = options.end;\n else endSeconds = latest;\n\n /\n At the end, allowing for the arithmetic that produced the end.\n\n `latest` is `recordCount recordDuration`, and with a fractional duration that is not the\n number it prints as: 6003 records of 0.1s is 600.3000000000001, not 600.3. So `--start\n 600.3` on a recording `--info` calls \"10m 0.3s\" was accepted by a hair, converted nothing,\n and exited 0 with a signals.csv holding its header — which is the empty conversion this\n error exists to prevent, and which the same command on a whole-second recording is refused\n for.\n\n A relative epsilon, the same shape the long layout uses to decide two sample times are one\n instant: well below any real interval, and well above the rounding that two different\n routes to the same quantity produce.\n /\n if (startSeconds >= latest \|\| sameInstant(startSeconds, latest)) {\n /\n Quote what was typed. Reporting the parsed seconds meant `--start 4h` came back as\n \"--start 14400s is at or past the end\", which reads as a value the user never gave.\n\n In quotation marks, which the parse errors above have always used and this did not.\n Without them the value ran into the sentence: `--start \" 5s \"` printed as\n `--start 5s is at or past the end`, where the value appears to be `5s is` and\n the surrounding spaces — the actual reason a shell-built argument went wrong — are\n invisible.\n /\n throw new TimeRangeError(\n /\n The recording's length in the same words --info uses for it.\n\n `formatSeconds` renders a bare number of seconds, so this message and the Duration\n line disagreed about one file in one session: --info said \"6m 40s\" and the error said\n \"400s\". On an overnight recording it read \"7950s recording\", leaving the reader to\n divide by 3600 to find out whether their --start was reasonable — which is the one\n question this message exists to answer. cli-reference.md has always documented it\n humanised (\"2h 12m 30s\"), a form no input could produce.\n\n The typed value keeps `quoted`, since that is the user's own text and should come\n back exactly as they wrote it.\n /\n /\n `latest` is where the recording ends on its own clock, which is its length only when\n it starts at zero. A file timed from its first record's timekeeping TAL need not: one\n whose records run 1000s to 1003s is three seconds long, and this called it \"this\n 16m 43s recording\" — while --info two lines away said \"Duration 3s\". Where the\n recording sits is the useful thing to say in that case, and it is the number --start\n has to be given.\n /\n earliest === 0\n ? `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n `${formatDuration(latest)} recording.`\n : `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n `${formatDuration(latest - earliest)} recording, which runs from ` +\n `${formatSeconds(earliest)} to ${formatSeconds(latest)}.`,\n );\n }\n if (endSeconds <= startSeconds) {\n // Quote whatever the caller actually gave, for the same reason as the error above. The\n // end is only echoed when --end was passed: with --duration the end is computed here,\n // so there is no typed value to quote and the arithmetic result is the honest thing.\n const endShown =\n options.end !== undefined && options.endText !== undefined\n ? quoted(options.endText, endSeconds)\n : formatSeconds(endSeconds);\n const startShown = quoted(options.startText, startSeconds);\n throw new TimeRangeError(\n `The requested window ends at ${endShown}, which is not after its start at ${startShown}.`,\n );\n }\n\n const clampedEnd = Math.min(endSeconds, latest);\n const { startRecord, endRecord } = selectRecords(options, startSeconds, clampedEnd);\n\n return {\n startSeconds,\n endSeconds: clampedEnd,\n startRecord,\n endRecord,\n /\n The same rounding, one field over.\n\n `latest` is `recordCount * recordDuration`, and 6003 records of 0.1s is\n 600.3000000000001. So `--end 600.3` on a recording of exactly that length wrote every\n sample it has — byte-identical to a bare conversion — and metadata.json recorded\n `whole_recording: false` for it, while the bare run recorded true. One conversion, two\n answers, on the field a pipeline reads to decide whether it has the lot.\n /\n isWholeRecording:\n (startSeconds <= earliest \|\| sameInstant(startSeconds, earliest)) &&\n (clampedEnd >= latest \|\| sameInstant(clampedEnd, latest)),\n recordingStartSeconds: earliest,\n recordingEndSeconds: latest,\n };\n}\n\nfunction span(\n recordStarts: Float64Array \| null \| undefined,\n recordCount: number,\n recordDuration: number,\n): { earliest: number; latest: number } {\n if (!recordStarts \|\| recordStarts.length === 0) {\n return { earliest: 0, latest: recordCount recordDuration };\n }\n let earliest = Infinity;\n let latest = -Infinity;\n for (const start of recordStarts) {\n if (start < earliest) earliest = start;\n if (start + recordDuration > latest) latest = start + recordDuration;\n }\n if (!Number.isFinite(earliest) \|\| !Number.isFinite(latest)) {\n return { earliest: 0, latest: recordCount * recordDuration };\n }\n return { earliest, latest };\n}\n\n/** Every record whose own time span overlaps the requested window. /\nfunction selectRecords(\n options: { recordDuration: number; recordCount: number; recordStarts?: Float64Array \| null \| undefined },\n startSeconds: number,\n endSeconds: number,\n): { startRecord: number; endRecord: number } {\n const starts = options.recordStarts;\n if (!starts \|\| starts.length === 0) {\n return {\n startRecord: Math.max(0, Math.floor(startSeconds / options.recordDuration)),\n endRecord: Math.min(options.recordCount, Math.ceil(endSeconds / options.recordDuration)),\n };\n }\n\n let first = options.recordCount;\n let last = 0;\n for (let i = 0; i < starts.length; i++) {\n const begin = starts[i] ?? 0;\n if (begin + options.recordDuration > startSeconds && begin < endSeconds) {\n if (i < first) first = i;\n if (i + 1 > last) last = i + 1;\n }\n }\n return first < last ? { startRecord: first, endRecord: last } : { startRecord: 0, endRecord: 0 };\n}\n\n/\n The value as the caller typed it, in quotation marks, or the parsed seconds if they gave\n * none. The marks show where the value begins and ends, which matters most for the values\n * that went wrong because of what surrounds them.\n */\nfunction quoted(text: string \| undefined, seconds: number): string {\n return text === undefined ? formatSeconds(seconds) : `\"${text}\"`;\n}\n\nfunction formatSeconds(seconds: number): string {\n return `${Number(seconds.toFixed(3))}s`;\n}\n"]}
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Parsing for the time-range options.\n \n Researchers write offsets in whatever form is natural for the recording in front\n * of them: seconds for a short ECG strip, `30m` into a sleep study, `01:23:45` when\n * reading off a clock. All three are accepted; anything ambiguous is rejected with\n * a message that shows the forms that work.\n /\n\nimport { fixed, formatDuration } from '../format/number.js';\n\nexport class TimeRangeError extends Error {\n constructor(message: string) {\n super(message);\n this.name = 'TimeRangeError';\n }\n}\n\nconst UNIT_SECONDS: Record<string, number> = {\n h: 3600,\n hr: 3600,\n hrs: 3600,\n hour: 3600,\n hours: 3600,\n m: 60,\n min: 60,\n mins: 60,\n minute: 60,\n minutes: 60,\n s: 1,\n sec: 1,\n secs: 1,\n second: 1,\n seconds: 1,\n ms: 0.001,\n};\n\nconst CLOCK = /^(?:(\\d+):)?(\\d{1,2}):(\\d{1,2}(?:\\.\\d+)?)$/u;\nconst UNIT_TOKEN = /(\\d+(?:\\.\\d+)?)\\s([a-z]+)/giu;\n\n/*\n Parse a duration or offset into seconds.\n \n Accepted: `90`, `90s`, `5m`, `1h30m`, `1h 30m 15s`, `00:30:00`, `30:00`, `250ms`.\n \n `allowNegative` is for the two options that name a position rather than a length.\n \n A recording is timed from its first record's timekeeping annotation, and nothing obliges that\n * to sit at or after zero: a file whose records run from -100 s to -97 s is one this tool reads,\n * times from -100, and describes with\n \n Timed from -100.000s (first sample; --start and --end use this clock)\n \n That line says the number can be typed straight back in, and it could not be. Every offset\n * such a recording has came back as \"not a time I understand\", so its whole clock was\n * unreachable and no window of it could be converted at all — the one file shape where a\n * window is refused for naming a moment the recording actually contains.\n \n A length below zero is still a different thing, and `--duration` still refuses one.\n /\nexport function parseTimeSpec(input: string, optionName: string, allowNegative = false): number {\n const trimmed = input.trim().toLowerCase();\n if (trimmed === '') {\n throw new TimeRangeError(`${optionName} is empty. Try a value like 30s, 5m, or 00:30:00.`);\n }\n\n /\n The sign is read off the front and applied to the whole value, so `-1h30m` is an hour and a\n half before the origin rather than an hour before it and half an hour after.\n\n Nothing may sit between the sign and the number, and a leading `+` is still refused: every\n other number this tool takes is refused when written in a form nobody types, and `+5` is\n exactly what `--decimals` and `--jobs` reject one flag over.\n /\n const negative = trimmed.startsWith('-');\n const text = negative ? trimmed.slice(1) : trimmed;\n const signed = (seconds: number): number =>\n assertFinite(negative ? -seconds : seconds, optionName, input, allowNegative);\n\n // Bare number means seconds.\n if (/^\\d+(?:\\.\\d+)?$/u.test(text)) return signed(Number(text));\n\n // Clock form: hh:mm:ss or mm:ss.\n const clock = CLOCK.exec(text);\n if (clock) {\n const hours = clock[1] === undefined ? 0 : Number(clock[1]);\n const minutes = Number(clock[2]);\n const seconds = Number(clock[3]);\n if (minutes >= 60 \|\| seconds >= 60) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" has a minutes or seconds field of 60 or more.`,\n );\n }\n return signed(hours 3600 + minutes * 60 + seconds);\n }\n\n // Unit form: 1h30m, 5 min, 250ms.\n UNIT_TOKEN.lastIndex = 0;\n let total = 0;\n let matched = 0;\n let consumed = 0;\n let match: RegExpExecArray \| null;\n // Which units have already been seen, so a repeat can be rejected rather than added.\n const seen = new Set<number>();\n while ((match = UNIT_TOKEN.exec(text)) !== null) {\n const amount = Number(match[1]);\n const unit = match[2] ?? '';\n const scale = UNIT_SECONDS[unit];\n if (scale === undefined) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" uses an unknown unit \"${unit}\". Use h, m, s, or ms.`,\n );\n }\n\n // \"1h1h\" is a typo, not a request for two hours. Summing repeated units silently\n // turned a slip into a plausible window that was quietly the wrong length. Units are\n // keyed by their scale so the aliases collapse together: \"1h30min20m\" is caught too.\n if (seen.has(scale)) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" gives the same unit twice. ` +\n `Combine each unit once, as in 1h30m.`,\n );\n }\n seen.add(scale);\n\n total += amount * scale;\n matched++;\n consumed += match[0].length;\n }\n\n // Reject partially-understood input like \"5x\" or \"1h banana\".\n if (matched === 0 \|\| consumed !== text.replace(/\\s+/gu, '').length) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" is not a time I understand. ` +\n `Try 30s, 5m, 1h30m, 00:30:00, or a plain number of seconds.`,\n );\n }\n\n return signed(total);\n}\n\nfunction assertFinite(\n value: number,\n optionName: string,\n input: string,\n allowNegative: boolean,\n): number {\n if (!Number.isFinite(value) \|\| (!allowNegative && value < 0)) {\n throw new TimeRangeError(`${optionName} \"${input}\" is not a valid non-negative time.`);\n }\n return value;\n}\n\nexport interface ResolvedRange {\n /** Inclusive start, in seconds from the beginning of the recording. /\n startSeconds: number;\n /* Exclusive end, in seconds. /\n endSeconds: number;\n /* First data record touching the window. /\n startRecord: number;\n /* One past the last data record touching the window. /\n endRecord: number;\n /* True when the window covers the whole recording. /\n isWholeRecording: boolean;\n /* Earliest record start, including EDF+D timing gaps. /\n recordingStartSeconds: number;\n /* End of the latest record, including EDF+D timing gaps. /\n recordingEndSeconds: number;\n}\n\n/\n Slack for comparisons at sample/window boundaries.\n \n A nanosecond is far below any real sampling interval — 20 kHz is 50 microseconds — so it\n * absorbs the arithmetic error in `recordStart + sample / rate` without reaching a\n * neighbouring sample.\n /\nexport const BOUNDARY_TOLERANCE = 1e-9;\n\n/\n The slack to use for a channel sampled this often.\n \n Never as much as half a sample interval, because slack that reaches the next sample stops\n * being slack. A fixed nanosecond was applied whatever the rate, and the format does not\n * oblige the interval to be larger than it: EDF's record duration is an 8-character field\n * that accepts `1e-9`. A recording of two 1 ns records holding ten samples each wrote ten of\n * its twenty rows — the window ends at 2e-9, the comparison asked for `time < 2e-9 - 1e-9`,\n * and the entire second record failed it. Exit 0, no warning, half the samples gone.\n /\nexport function toleranceFor(rate: number): number {\n if (!(rate > 0) \|\| !Number.isFinite(rate)) return BOUNDARY_TOLERANCE;\n return Math.min(BOUNDARY_TOLERANCE, 1 / rate / 2);\n}\n\n/* Match the exact half-open boundary rules used while writing signal rows. /\nexport function sampleTimeIsInRange(\n time: number,\n startSeconds: number,\n endSeconds: number,\n tolerance: number = BOUNDARY_TOLERANCE,\n): boolean {\n return time >= startSeconds - tolerance && time < endSeconds - tolerance;\n}\n\n/* Count samples from one record that fall inside a half-open requested window. /\nexport function countSamplesInRange(options: {\n recordStart: number;\n rate: number;\n samplesPerRecord: number;\n startSeconds: number;\n endSeconds: number;\n}): number {\n const slack = toleranceFor(options.rate);\n const lower = Math.ceil(\n (options.startSeconds - slack - options.recordStart) options.rate,\n );\n const upper = Math.ceil(\n (options.endSeconds - slack - options.recordStart) * options.rate,\n );\n const first = Math.max(0, Math.min(options.samplesPerRecord, lower));\n const last = Math.max(0, Math.min(options.samplesPerRecord, upper));\n return Math.max(0, last - first);\n}\n\n/*\n Whether two instants differ only by the arithmetic that produced them.\n \n A relative epsilon, because the gap between doubles grows with magnitude — the same shape\n * the long layout uses to decide two sample times are one instant. Well below any real sample\n * interval, and well above the rounding that two routes to one quantity produce: a recording's\n * length is `recordCount * recordDuration`, which for 6003 records of 0.1s is not the 600.3 it\n * prints as.\n /\nfunction sameInstant(a: number, b: number): boolean {\n return Math.abs(a - b) <= Math.max(Math.abs(a), Math.abs(b)) 1e-12;\n}\n\n/*\n Turn a requested window into both an exact time span and the record range that\n * contains it. Records are the unit the file can be read in; the exact span is what\n * decides which samples inside those records are actually written.\n /\nexport function resolveRange(options: {\n start?: number \| undefined;\n /* The `--start` value exactly as typed, quoted back in the past-the-end error. /\n startText?: string \| undefined;\n duration?: number \| undefined;\n end?: number \| undefined;\n /* The `--end` value exactly as typed, quoted back in the window error. /\n endText?: string \| undefined;\n recordDuration: number;\n recordCount: number;\n /\n True start time of each data record, for discontinuous files. When absent,\n * records are assumed to sit end to end.\n /\n recordStarts?: Float64Array \| null \| undefined;\n}): ResolvedRange {\n // For a continuous file the recording spans recordCount recordDuration. A\n // discontinuous one does not: a 10-second recording with a 95-second gap in the\n // middle still ends at 105 seconds. Deriving the span from the records' real\n // positions is what stops a requested window from being clipped back to the\n // amount of data in the file and silently discarding everything past it.\n const { earliest, latest } = span(options.recordStarts, options.recordCount, options.recordDuration);\n\n if (options.duration !== undefined && options.end !== undefined) {\n throw new TimeRangeError('Use either --duration or --end, not both.');\n }\n\n const startSeconds = options.start ?? earliest;\n\n let endSeconds: number;\n if (options.duration !== undefined) endSeconds = startSeconds + options.duration;\n else if (options.end !== undefined) endSeconds = options.end;\n else endSeconds = latest;\n\n /\n At the end, allowing for the arithmetic that produced the end.\n\n `latest` is `recordCount recordDuration`, and with a fractional duration that is not the\n number it prints as: 6003 records of 0.1s is 600.3000000000001, not 600.3. So `--start\n 600.3` on a recording `--info` calls \"10m 0.3s\" was accepted by a hair, converted nothing,\n and exited 0 with a signals.csv holding its header — which is the empty conversion this\n error exists to prevent, and which the same command on a whole-second recording is refused\n for.\n\n A relative epsilon, the same shape the long layout uses to decide two sample times are one\n instant: well below any real interval, and well above the rounding that two different\n routes to the same quantity produce.\n /\n if (startSeconds >= latest \|\| sameInstant(startSeconds, latest)) {\n /\n Quote what was typed. Reporting the parsed seconds meant `--start 4h` came back as\n \"--start 14400s is at or past the end\", which reads as a value the user never gave.\n\n In quotation marks, which the parse errors above have always used and this did not.\n Without them the value ran into the sentence: `--start \" 5s \"` printed as\n `--start 5s is at or past the end`, where the value appears to be `5s is` and\n the surrounding spaces — the actual reason a shell-built argument went wrong — are\n invisible.\n /\n throw new TimeRangeError(\n /\n The recording's length in the same words --info uses for it.\n\n `formatSeconds` renders a bare number of seconds, so this message and the Duration\n line disagreed about one file in one session: --info said \"6m 40s\" and the error said\n \"400s\". On an overnight recording it read \"7950s recording\", leaving the reader to\n divide by 3600 to find out whether their --start was reasonable — which is the one\n question this message exists to answer. cli-reference.md has always documented it\n humanised (\"2h 12m 30s\"), a form no input could produce.\n\n The typed value keeps `quoted`, since that is the user's own text and should come\n back exactly as they wrote it.\n /\n /\n `latest` is where the recording ends on its own clock, which is its length only when\n it starts at zero. A file timed from its first record's timekeeping TAL need not: one\n whose records run 1000s to 1003s is three seconds long, and this called it \"this\n 16m 43s recording\" — while --info two lines away said \"Duration 3s\". Where the\n recording sits is the useful thing to say in that case, and it is the number --start\n has to be given.\n /\n earliest === 0\n ? `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n `${formatDuration(latest)} recording.`\n : `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n `${formatDuration(latest - earliest)} recording, which runs from ` +\n `${formatSeconds(earliest)} to ${formatSeconds(latest)}.`,\n );\n }\n if (endSeconds <= startSeconds) {\n // Quote whatever the caller actually gave, for the same reason as the error above. The\n // end is only echoed when --end was passed: with --duration the end is computed here,\n // so there is no typed value to quote and the arithmetic result is the honest thing.\n const endShown =\n options.end !== undefined && options.endText !== undefined\n ? quoted(options.endText, endSeconds)\n : formatSeconds(endSeconds);\n const startShown = quoted(options.startText, startSeconds);\n throw new TimeRangeError(\n `The requested window ends at ${endShown}, which is not after its start at ${startShown}.`,\n );\n }\n\n const clampedEnd = Math.min(endSeconds, latest);\n const { startRecord, endRecord } = selectRecords(options, startSeconds, clampedEnd);\n\n return {\n startSeconds,\n endSeconds: clampedEnd,\n startRecord,\n endRecord,\n /\n The same rounding, one field over.\n\n `latest` is `recordCount * recordDuration`, and 6003 records of 0.1s is\n 600.3000000000001. So `--end 600.3` on a recording of exactly that length wrote every\n sample it has — byte-identical to a bare conversion — and metadata.json recorded\n `whole_recording: false` for it, while the bare run recorded true. One conversion, two\n answers, on the field a pipeline reads to decide whether it has the lot.\n /\n isWholeRecording:\n (startSeconds <= earliest \|\| sameInstant(startSeconds, earliest)) &&\n (clampedEnd >= latest \|\| sameInstant(clampedEnd, latest)),\n recordingStartSeconds: earliest,\n recordingEndSeconds: latest,\n };\n}\n\nfunction span(\n recordStarts: Float64Array \| null \| undefined,\n recordCount: number,\n recordDuration: number,\n): { earliest: number; latest: number } {\n if (!recordStarts \|\| recordStarts.length === 0) {\n return { earliest: 0, latest: recordCount recordDuration };\n }\n let earliest = Infinity;\n let latest = -Infinity;\n for (const start of recordStarts) {\n if (start < earliest) earliest = start;\n if (start + recordDuration > latest) latest = start + recordDuration;\n }\n if (!Number.isFinite(earliest) \|\| !Number.isFinite(latest)) {\n return { earliest: 0, latest: recordCount * recordDuration };\n }\n return { earliest, latest };\n}\n\n/** Every record whose own time span overlaps the requested window. /\nfunction selectRecords(\n options: { recordDuration: number; recordCount: number; recordStarts?: Float64Array \| null \| undefined },\n startSeconds: number,\n endSeconds: number,\n): { startRecord: number; endRecord: number } {\n const starts = options.recordStarts;\n if (!starts \|\| starts.length === 0) {\n return {\n startRecord: Math.max(0, Math.floor(startSeconds / options.recordDuration)),\n endRecord: Math.min(options.recordCount, Math.ceil(endSeconds / options.recordDuration)),\n };\n }\n\n let first = options.recordCount;\n let last = 0;\n for (let i = 0; i < starts.length; i++) {\n const begin = starts[i] ?? 0;\n if (begin + options.recordDuration > startSeconds && begin < endSeconds) {\n if (i < first) first = i;\n if (i + 1 > last) last = i + 1;\n }\n }\n return first < last ? { startRecord: first, endRecord: last } : { startRecord: 0, endRecord: 0 };\n}\n\n/\n The value as the caller typed it, in quotation marks, or the parsed seconds if they gave\n * none. The marks show where the value begins and ends, which matters most for the values\n * that went wrong because of what surrounds them.\n /\nfunction quoted(text: string \| undefined, seconds: number): string {\n return text === undefined ? formatSeconds(seconds) : `\"${text}\"`;\n}\n\nfunction formatSeconds(seconds: number): string {\n /\n The same 1e21 cliff, in the bounds this message hands back.\n\n `--start \"9e21\"` was answered with \"is at or past the end of this 3e+21s recording, which\n runs from 1e+21s to 4e+21s\" — a sentence whose whole purpose is to say what window there\n is to ask for, ending in two tokens the parser refuses: `--start 1e+21s` is \"uses an\n unknown unit \\\"e\\\"\". `Number(...)` was here to drop the trailing zeros, and it also\n re-introduced the exponent form that `toFixed` had produced.\n */\n const text = fixed(seconds, 3);\n return `${text.includes('.') ? text.replace(/\\.?0+$/u, '') : text}s`;\n}\n"]}

package/dist/edf/annotations.js CHANGED Viewed

@@ -177,9 +177,23 @@ function parseTal(chunk, recordIndex) {
       reported. A duration is one field of an otherwise readable event, so the event is kept —
       but it is counted, and the run says so.
     */
+    /*
+      Fill in the field is an absent duration, not a zero.
+      `Number` reads a run of whitespace as 0 — the rule that makes `Number('')` zero, one step
+      along — so a TAL whose duration field held nothing but the writer's padding was exported
+      with a `duration_s` of `0`, byte-identical to the event beside it whose file really did
+      say `0`. An instantaneous event is a claim about the recording, and no writer made it;
+      inventing it is the one thing this tool does not do, and it did so in silence, exit 0.
+      The empty field this condition already declines is the same field without the fill in it,
+      so padding takes the same answer: the file stated no duration. `trim` empties exactly the
+      strings `Number` would otherwise have swallowed into a zero, so `  2.5  ` still reads as
+      2.5 and `abc` is still counted as unreadable below.
+    */
     let duration = null;
     let durationUnreadable = false;
-    if (durationText !== null && durationText !== '') {
+    if (durationText !== null && durationText.trim() !== '') {
         const d = Number(durationText);
         if (Number.isFinite(d))
             duration = d;

package/dist/edf/annotations.js.map CHANGED Viewed

	@@ -1 +1 @@
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Its bytes are a\n * run of Time-stamped Annotation Lists, each terminated by a NUL, with the rest\n * of the channel NUL-padded:\n \n +<onset>[<0x15><duration>]<0x14><text><0x14>...<0x00>\n \n The first TAL of every data record must carry that record's start time and no\n * text; that is how an EDF+D file states where each record actually sits in time.\n \n +1.25<0x15>0.5<0x14>Seizure onset<0x14><0x00>\n /\n\nimport { decodeUtf8 } from './bytes.js';\n\nconst SEP_TEXT = 0x14; // separates onset/duration from text, and text from text\nconst SEP_DURATION = 0x15; // separates onset from duration\nconst TAL_END = 0x00;\n\nconst TEXT_SEP_CHAR = String.fromCharCode(SEP_TEXT);\nconst DURATION_SEP_CHAR = String.fromCharCode(SEP_DURATION);\n\nexport interface Annotation {\n /* Seconds from the start of the recording. /\n onset: number;\n /\n Seconds, or null when the TAL stated no duration that could be read.\n \n Null covers two cases the file distinguishes and this field does not: a TAL that omitted\n * the duration, and a TAL that stated one which is not a number. They are told apart by\n * `unreadableDurations`, which is what raises the warning; the value itself has nowhere\n * honest to put \"the file said `abc`\".\n /\n duration: number \| null;\n text: string;\n /* Index of the data record this annotation was stored in. /\n recordIndex: number;\n /\n True when the file stated a duration that could not be read.\n \n `duration` is null either way, which is the ambiguity the counts beside it exist to\n * flag — and those counts were of the whole file while `annotations.csv` is filtered to\n * the requested window. A conversion of one second of a recording warned that \"1\n * annotation states a duration that is not a number, so its duration_s cell is empty\"\n * about an event two seconds outside it, and failed `--strict` for it. Carrying the fact\n * on the event lets the count be taken where the window has already been applied.\n /\n durationUnreadable?: boolean;\n}\n\nexport interface DecodedRecordAnnotations {\n /* Record start time in seconds, from the leading timekeeping TAL. /\n recordStart: number \| null;\n annotations: Annotation[];\n /* Non-empty chunks that were not valid TALs, so the caller can report them. /\n malformed: number;\n /* Unreadable TALs in first position, which carry a record's start time, not an event. /\n malformedTimekeeping: number;\n /\n How many of those also carried event text, and so lost events as well as a position.\n \n A TAL in first position holds the record's start time, and may hold events after it — the\n * specification allows both in the one entry, and writers use it. When such a TAL cannot be\n * parsed, both are gone, and counting it only as lost timekeeping let the warning beside it\n * say \"No event was lost\" over a conversion that had just dropped four of them.\n \n Counted rather than inferred, because the sentence has to be right in the ordinary case\n * too: a bare timekeeping TAL really does lose no event, and that is nearly all of them.\n /\n malformedTimekeepingWithText: number;\n /\n Events kept whose stated duration could not be read.\n \n Counted apart again, for the same reason the two above are: the entry was exported and\n * nothing about it is missing except the one field, so calling it an entry that \"could not\n * be exported\" describes a loss that did not happen and hides the one that did.\n /\n unreadableDurations: number;\n /\n Events kept whose stated duration is a readable number below zero.\n \n Separate from the count above because the value survives: it is written to the CSV as\n * the file gave it, and what is wrong with it is arithmetic rather than parsing.\n /\n negativeDurations: number;\n}\n\n/\n Decode one data record's annotation bytes.\n \n Malformed TALs are skipped rather than thrown, because a single bad annotation\n * should not cost the user an entire conversion. The count of skipped chunks is\n * returned so the caller can tell the user rather than losing them in silence.\n /\nexport function decodeRecordAnnotations(\n bytes: Uint8Array,\n recordIndex: number,\n carriesTimekeeping = true,\n): DecodedRecordAnnotations {\n const annotations: Annotation[] = [];\n let recordStart: number \| null = null;\n let isFirstTal = true;\n let malformed = 0;\n let malformedTimekeeping = 0;\n let malformedTimekeepingWithText = 0;\n let unreadableDurations = 0;\n let negativeDurations = 0;\n\n let start = 0;\n for (let i = 0; i <= bytes.length; i++) {\n if (i !== bytes.length && bytes[i] !== TAL_END) continue;\n\n if (i > start) {\n const chunk = bytes.subarray(start, i);\n /\n Padding is not a lost annotation.\n\n The spec pads the slot with NUL, which the loop above already skips because it is what\n separates one TAL from the next. Writers pad with spaces instead, and a run of spaces\n after the last TAL is a non-empty chunk — so a file holding one perfectly readable\n event, exported in full, was told \"2 annotation entries were unreadable and could not\n be exported\", one per record. Nothing was lost. Under --strict that is a failed run\n over the whitespace at the end of a slot.\n\n Only whitespace. A chunk of anything else that does not parse is a real loss and is\n still counted, which is the case this warning exists for.\n /\n if (chunk.every(isPaddingByte)) {\n start = i + 1;\n continue;\n }\n const parsed = parseTal(chunk, recordIndex);\n\n // The timekeeping TAL is the one in first POSITION, whether or not it decodes.\n // Clearing this flag only on a successful parse meant that an unreadable first TAL\n // promoted the next ordinary annotation to timekeeping, and its onset silently\n // became the record's start time — shifting every sample in that record. Leaving\n // recordStart null instead is what the caller already handles, with a fallback\n // timestamp and an ANNOTATION_DECODE_FAILED warning naming the record.\n /\n Only one annotation channel carries a record's start time.\n\n This flagged the first TAL of every annotation channel as timekeeping. In a second\n channel the first TAL is an ordinary event — so when one failed to parse, the event\n was dropped and counted as a lost timekeeping entry, which produced the warning\n \"3 data records carry a timekeeping annotation that could not be read\" followed by\n \"No event was lost\". Three events had been lost, and the timekeeping in that file was\n perfectly readable. Both sentences false, about the same three records.\n /\n const isTimekeeping = isFirstTal && carriesTimekeeping;\n isFirstTal = false;\n\n if (parsed) {\n if (isTimekeeping) recordStart = parsed.onset;\n for (const annotation of parsed.annotations) annotations.push(annotation);\n unreadableDurations += parsed.unreadableDurations;\n negativeDurations += parsed.negativeDurations;\n } else {\n /\n Counted apart from the events, because losing one is a different loss.\n\n A timekeeping TAL is never exported — it says where the record sits, not what\n happened — so counting it among the entries that \"could not be exported\" both\n overstated what was lost from annotations.csv and said nothing about the thing that\n actually went missing, which is a record's position in time. A file with one\n unreadable timekeeping TAL and three perfectly good events reported \"1 annotation\n entry was unreadable and could not be exported\" while exporting all three.\n\n The other direction is just as wrong. A first-position TAL may carry events after\n the start time, and when one of those cannot be parsed the events go with it — so\n counting it only as lost timekeeping produced the opposite false sentence: \"No event\n was lost\", printed over a run whose annotations.csv had gone from six rows to two.\n It is one entry that could not be exported and one record with no position, and it\n is counted as both.\n /\n if (isTimekeeping) {\n malformedTimekeeping++;\n if (carriesAnnotationText(chunk)) {\n malformedTimekeepingWithText++;\n malformed++;\n }\n } else malformed++;\n }\n }\n start = i + 1;\n }\n\n return {\n recordStart,\n annotations,\n malformed,\n malformedTimekeeping,\n malformedTimekeepingWithText,\n unreadableDurations,\n negativeDurations,\n };\n}\n\ninterface ParsedTal {\n onset: number;\n annotations: Annotation[];\n /* How many of those annotations carry a duration the file stated and this could not read. /\n unreadableDurations: number;\n /* How many carry a duration that read as a number below zero. /\n negativeDurations: number;\n}\n\n/\n Whether a TAL that could not be parsed still carried event text.\n \n A TAL is `onset[<0x15>duration]<0x14>text<0x14>...`, so anything other than padding after\n * the first 0x14 is a description the file meant to export. Read from the raw chunk, since by\n * the time this is asked the parse has already failed and there is no structure to consult.\n /\nfunction carriesAnnotationText(chunk: Uint8Array): boolean {\n let afterSeparator = false;\n for (const byte of chunk) {\n if (byte === 0x14) {\n afterSeparator = true;\n continue;\n }\n if (afterSeparator && !isPaddingByte(byte)) return true;\n }\n return false;\n}\n\n/* Space, tab, CR, LF or NUL — what a writer fills the rest of the slot with. /\nfunction isPaddingByte(byte: number): boolean {\n return byte === 0x20 \|\| byte === 0x09 \|\| byte === 0x0d \|\| byte === 0x0a \|\| byte === 0x00;\n}\n\nfunction parseTal(chunk: Uint8Array, recordIndex: number): ParsedTal \| null {\n // The onset must be explicitly signed; anything else is not a TAL.\n const first = chunk[0];\n if (first !== 0x2b / + / && first !== 0x2d / - /) return null;\n\n const text = decodeUtf8(chunk);\n const parts = text.split(TEXT_SEP_CHAR);\n const head = parts[0] ?? '';\n\n let onsetText = head;\n let durationText: string \| null = null;\n const durationSep = head.indexOf(DURATION_SEP_CHAR);\n if (durationSep >= 0) {\n onsetText = head.slice(0, durationSep);\n durationText = head.slice(durationSep + 1);\n }\n\n const onset = Number(onsetText);\n if (!Number.isFinite(onset)) return null;\n\n /\n A duration the file stated and this could not read is not the same as no duration.\n\n Both came out as `null` and so as an empty `duration_s` cell, which the documentation\n defines as meaning the file gave no duration — so an event whose duration was written as\n `abc` was exported as an event with no duration, indistinguishable from one beside it\n that genuinely had none, and nothing anywhere said a field had been dropped. The onset is\n already held to this standard: one that is not a number costs the whole TAL and is\n reported. A duration is one field of an otherwise readable event, so the event is kept —\n but it is counted, and the run says so.\n /\n let duration: number \| null = null;\n let durationUnreadable = false;\n if (durationText !== null && durationText !== '') {\n const d = Number(durationText);\n if (Number.isFinite(d)) duration = d;\n else durationUnreadable = true;\n }\n\n /\n A duration is a length of time, and a length below zero is not one.\n\n The value is kept and written as the file gave it — inventing a zero, or dropping it to\n an empty cell, would put a number in annotations.csv that no writer wrote, which is the\n one thing this tool does not do. But it is reported, because everything downstream\n quietly does the wrong thing with it: the recipe this documentation gives for the samples\n an event covers is `onset_s + duration_s`, which for a duration of -3 ends three seconds\n before the event starts and selects nothing at all, with no error anywhere.\n /\n const durationNegative = duration !== null && duration < 0;\n\n const annotations: Annotation[] = [];\n for (const raw of parts.slice(1)) {\n /\n A trailing separator yields an empty segment; a timekeeping TAL is all empty.\n\n Whitespace counts as empty here, which it did not, and the padding at the end of the\n slot became an event. The chunk loop above already refuses to call a run of spaces a\n lost annotation — but it only sees chunks between NULs, and a writer that leaves its\n last TAL unterminated puts the fill inside the chunk, after the final 0x14. Split on\n that separator it is a text segment like any other, and \" \" is not \"\".\n\n A file holding two events exported four rows: `0.5,,Lights off,0` and `0.5,, ,0`,\n twice, sharing the real event's onset, with annotations_written and the run summary\n agreeing with the inflated number and nothing warned. An event whose description is\n genuinely nothing but spaces cannot be told from fill, and inventing rows out of fill\n is the worse of the two answers.\n */\n if ([...raw].every((c) => isPaddingByte(c.charCodeAt(0)))) continue;\n annotations.push({\n onset,\n duration,\n text: raw,\n recordIndex,\n ...(durationUnreadable ? { durationUnreadable: true } : {}),\n });\n }\n\n // Per event rather than per TAL: one TAL may carry several texts, and each becomes a row\n // of annotations.csv with the same cell in it.\n return {\n onset,\n annotations,\n unreadableDurations: durationUnreadable ? annotations.length : 0,\n negativeDurations: durationNegative ? annotations.length : 0,\n };\n}\n\nexport { SEP_TEXT, SEP_DURATION, TAL_END };\n"]}
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Its bytes are a\n * run of Time-stamped Annotation Lists, each terminated by a NUL, with the rest\n * of the channel NUL-padded:\n \n +<onset>[<0x15><duration>]<0x14><text><0x14>...<0x00>\n \n The first TAL of every data record must carry that record's start time and no\n * text; that is how an EDF+D file states where each record actually sits in time.\n \n +1.25<0x15>0.5<0x14>Seizure onset<0x14><0x00>\n /\n\nimport { decodeUtf8 } from './bytes.js';\n\nconst SEP_TEXT = 0x14; // separates onset/duration from text, and text from text\nconst SEP_DURATION = 0x15; // separates onset from duration\nconst TAL_END = 0x00;\n\nconst TEXT_SEP_CHAR = String.fromCharCode(SEP_TEXT);\nconst DURATION_SEP_CHAR = String.fromCharCode(SEP_DURATION);\n\nexport interface Annotation {\n /* Seconds from the start of the recording. /\n onset: number;\n /\n Seconds, or null when the TAL stated no duration that could be read.\n \n Null covers two cases the file distinguishes and this field does not: a TAL that omitted\n * the duration, and a TAL that stated one which is not a number. 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Carrying the fact\n * on the event lets the count be taken where the window has already been applied.\n /\n durationUnreadable?: boolean;\n}\n\nexport interface DecodedRecordAnnotations {\n /* Record start time in seconds, from the leading timekeeping TAL. /\n recordStart: number \| null;\n annotations: Annotation[];\n /* Non-empty chunks that were not valid TALs, so the caller can report them. /\n malformed: number;\n /* Unreadable TALs in first position, which carry a record's start time, not an event. /\n malformedTimekeeping: number;\n /\n How many of those also carried event text, and so lost events as well as a position.\n \n A TAL in first position holds the record's start time, and may hold events after it — the\n * specification allows both in the one entry, and writers use it. When such a TAL cannot be\n * parsed, both are gone, and counting it only as lost timekeeping let the warning beside it\n * say \"No event was lost\" over a conversion that had just dropped four of them.\n \n Counted rather than inferred, because the sentence has to be right in the ordinary case\n * too: a bare timekeeping TAL really does lose no event, and that is nearly all of them.\n /\n malformedTimekeepingWithText: number;\n /\n Events kept whose stated duration could not be read.\n \n Counted apart again, for the same reason the two above are: the entry was exported and\n * nothing about it is missing except the one field, so calling it an entry that \"could not\n * be exported\" describes a loss that did not happen and hides the one that did.\n /\n unreadableDurations: number;\n /\n Events kept whose stated duration is a readable number below zero.\n \n Separate from the count above because the value survives: it is written to the CSV as\n * the file gave it, and what is wrong with it is arithmetic rather than parsing.\n /\n negativeDurations: number;\n}\n\n/\n Decode one data record's annotation bytes.\n \n Malformed TALs are skipped rather than thrown, because a single bad annotation\n * should not cost the user an entire conversion. 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Leaving\n // recordStart null instead is what the caller already handles, with a fallback\n // timestamp and an ANNOTATION_DECODE_FAILED warning naming the record.\n /\n Only one annotation channel carries a record's start time.\n\n This flagged the first TAL of every annotation channel as timekeeping. In a second\n channel the first TAL is an ordinary event — so when one failed to parse, the event\n was dropped and counted as a lost timekeeping entry, which produced the warning\n \"3 data records carry a timekeeping annotation that could not be read\" followed by\n \"No event was lost\". Three events had been lost, and the timekeeping in that file was\n perfectly readable. Both sentences false, about the same three records.\n /\n const isTimekeeping = isFirstTal && carriesTimekeeping;\n isFirstTal = false;\n\n if (parsed) {\n if (isTimekeeping) recordStart = parsed.onset;\n for (const annotation of parsed.annotations) annotations.push(annotation);\n unreadableDurations += parsed.unreadableDurations;\n negativeDurations += parsed.negativeDurations;\n } else {\n /\n Counted apart from the events, because losing one is a different loss.\n\n A timekeeping TAL is never exported — it says where the record sits, not what\n happened — so counting it among the entries that \"could not be exported\" both\n overstated what was lost from annotations.csv and said nothing about the thing that\n actually went missing, which is a record's position in time. A file with one\n unreadable timekeeping TAL and three perfectly good events reported \"1 annotation\n entry was unreadable and could not be exported\" while exporting all three.\n\n The other direction is just as wrong. A first-position TAL may carry events after\n the start time, and when one of those cannot be parsed the events go with it — so\n counting it only as lost timekeeping produced the opposite false sentence: \"No event\n was lost\", printed over a run whose annotations.csv had gone from six rows to two.\n It is one entry that could not be exported and one record with no position, and it\n is counted as both.\n /\n if (isTimekeeping) {\n malformedTimekeeping++;\n if (carriesAnnotationText(chunk)) {\n malformedTimekeepingWithText++;\n malformed++;\n }\n } else malformed++;\n }\n }\n start = i + 1;\n }\n\n return {\n recordStart,\n annotations,\n malformed,\n malformedTimekeeping,\n malformedTimekeepingWithText,\n unreadableDurations,\n negativeDurations,\n };\n}\n\ninterface ParsedTal {\n onset: number;\n annotations: Annotation[];\n /* How many of those annotations carry a duration the file stated and this could not read. /\n unreadableDurations: number;\n /* How many carry a duration that read as a number below zero. /\n negativeDurations: number;\n}\n\n/\n Whether a TAL that could not be parsed still carried event text.\n \n A TAL is `onset[<0x15>duration]<0x14>text<0x14>...`, so anything other than padding after\n * the first 0x14 is a description the file meant to export. Read from the raw chunk, since by\n * the time this is asked the parse has already failed and there is no structure to consult.\n /\nfunction carriesAnnotationText(chunk: Uint8Array): boolean {\n let afterSeparator = false;\n for (const byte of chunk) {\n if (byte === 0x14) {\n afterSeparator = true;\n continue;\n }\n if (afterSeparator && !isPaddingByte(byte)) return true;\n }\n return false;\n}\n\n/* Space, tab, CR, LF or NUL — what a writer fills the rest of the slot with. /\nfunction isPaddingByte(byte: number): boolean {\n return byte === 0x20 \|\| byte === 0x09 \|\| byte === 0x0d \|\| byte === 0x0a \|\| byte === 0x00;\n}\n\nfunction parseTal(chunk: Uint8Array, recordIndex: number): ParsedTal \| null {\n // The onset must be explicitly signed; anything else is not a TAL.\n const first = chunk[0];\n if (first !== 0x2b / + / && first !== 0x2d / - /) return null;\n\n const text = decodeUtf8(chunk);\n const parts = text.split(TEXT_SEP_CHAR);\n const head = parts[0] ?? '';\n\n let onsetText = head;\n let durationText: string \| null = null;\n const durationSep = head.indexOf(DURATION_SEP_CHAR);\n if (durationSep >= 0) {\n onsetText = head.slice(0, durationSep);\n durationText = head.slice(durationSep + 1);\n }\n\n const onset = Number(onsetText);\n if (!Number.isFinite(onset)) return null;\n\n /\n A duration the file stated and this could not read is not the same as no duration.\n\n Both came out as `null` and so as an empty `duration_s` cell, which the documentation\n defines as meaning the file gave no duration — so an event whose duration was written as\n `abc` was exported as an event with no duration, indistinguishable from one beside it\n that genuinely had none, and nothing anywhere said a field had been dropped. The onset is\n already held to this standard: one that is not a number costs the whole TAL and is\n reported. A duration is one field of an otherwise readable event, so the event is kept —\n but it is counted, and the run says so.\n /\n /\n Fill in the field is an absent duration, not a zero.\n\n `Number` reads a run of whitespace as 0 — the rule that makes `Number('')` zero, one step\n along — so a TAL whose duration field held nothing but the writer's padding was exported\n with a `duration_s` of `0`, byte-identical to the event beside it whose file really did\n say `0`. An instantaneous event is a claim about the recording, and no writer made it;\n inventing it is the one thing this tool does not do, and it did so in silence, exit 0.\n\n The empty field this condition already declines is the same field without the fill in it,\n so padding takes the same answer: the file stated no duration. `trim` empties exactly the\n strings `Number` would otherwise have swallowed into a zero, so ` 2.5 ` still reads as\n 2.5 and `abc` is still counted as unreadable below.\n /\n let duration: number \| null = null;\n let durationUnreadable = false;\n if (durationText !== null && durationText.trim() !== '') {\n const d = Number(durationText);\n if (Number.isFinite(d)) duration = d;\n else durationUnreadable = true;\n }\n\n /\n A duration is a length of time, and a length below zero is not one.\n\n The value is kept and written as the file gave it — inventing a zero, or dropping it to\n an empty cell, would put a number in annotations.csv that no writer wrote, which is the\n one thing this tool does not do. But it is reported, because everything downstream\n quietly does the wrong thing with it: the recipe this documentation gives for the samples\n an event covers is `onset_s + duration_s`, which for a duration of -3 ends three seconds\n before the event starts and selects nothing at all, with no error anywhere.\n /\n const durationNegative = duration !== null && duration < 0;\n\n const annotations: Annotation[] = [];\n for (const raw of parts.slice(1)) {\n /\n A trailing separator yields an empty segment; a timekeeping TAL is all empty.\n\n Whitespace counts as empty here, which it did not, and the padding at the end of the\n slot became an event. The chunk loop above already refuses to call a run of spaces a\n lost annotation — but it only sees chunks between NULs, and a writer that leaves its\n last TAL unterminated puts the fill inside the chunk, after the final 0x14. Split on\n that separator it is a text segment like any other, and \" \" is not \"\".\n\n A file holding two events exported four rows: `0.5,,Lights off,0` and `0.5,, ,0`,\n twice, sharing the real event's onset, with annotations_written and the run summary\n agreeing with the inflated number and nothing warned. An event whose description is\n genuinely nothing but spaces cannot be told from fill, and inventing rows out of fill\n is the worse of the two answers.\n */\n if ([...raw].every((c) => isPaddingByte(c.charCodeAt(0)))) continue;\n annotations.push({\n onset,\n duration,\n text: raw,\n recordIndex,\n ...(durationUnreadable ? { durationUnreadable: true } : {}),\n });\n }\n\n // Per event rather than per TAL: one TAL may carry several texts, and each becomes a row\n // of annotations.csv with the same cell in it.\n return {\n onset,\n annotations,\n unreadableDurations: durationUnreadable ? annotations.length : 0,\n negativeDurations: durationNegative ? annotations.length : 0,\n };\n}\n\nexport { SEP_TEXT, SEP_DURATION, TAL_END };\n"]}

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.7.19",
+  "version": "0.7.21",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",