npm - edf2csv - Versions diffs - 0.7.101 → 0.7.102 - Mend

edf2csv 0.7.101 → 0.7.102

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (3) hide show

package/dist/convert/time-range.js +27 -2
package/dist/convert/time-range.js.map +1 -1
package/package.json +1 -1

package/dist/convert/time-range.js CHANGED Viewed

@@ -91,11 +91,13 @@ export function parseTimeSpec(input, optionName, allowNegative = false) {
         }
         return signed(hours * 3600 + minutes * 60 + seconds);
     }
-    // Unit form: 1h30m, 5 min, 250ms.
+    // Unit form: 1h30m, 1h30m 15s, 250ms. A number sits directly against its unit; see below.
     UNIT_TOKEN.lastIndex = 0;
     let total = 0;
     let matched = 0;
     let consumed = 0;
+    /** Whether any token had a space between its number and its unit. See the refusal below. */
+    let spaced = false;
     let match;
     // Which units have already been seen, so a repeat can be rejected rather than added.
     const seen = new Set();
@@ -117,13 +119,36 @@ export function parseTimeSpec(input, optionName, allowNegative = false) {
         seen.add(scale);
         total += amount * scale;
         matched++;
-        consumed += match[0].length;
+        // Counted with the whitespace taken out, so the comparison below is against the same
+        // string on both sides and a space inside a token reaches the refusal written for it
+        // rather than the one about input that could not be read at all.
+        consumed += match[0].replace(/\s+/gu, '').length;
+        if (/\s/u.test(match[0]))
+            spaced = true;
     }
     // Reject partially-understood input like "5x" or "1h banana".
     if (matched === 0 || consumed !== text.replace(/\s+/gu, '').length) {
         throw new TimeRangeError(`${optionName} "${input}" is not a time I understand. ` +
             `Try 30s, 5m, 1h30m, 00:30:00, or a plain number of seconds.`);
     }
+    /*
+      A space between a number and its unit, named as such.
+      `5 min` is refused on purpose — cli-reference sets the rule out, and it is what keeps
+      `1 2h` from being read as anything — but it came back as "is not a time I understand. Try
+      30s, 5m, 1h30m, 00:30:00, or a plain number of seconds", which is the message for input
+      that could not be read at all. Every part of `5 min` was read: the number parsed, the unit
+      was looked up in the table and found. The one thing wrong with it is a space, and the
+      reader was sent to re-check their unit spellings instead — with `5m` sitting in the list of
+      suggestions, differing from what they typed by a character they cannot see is the problem.
+      Only reachable now that the count above ignores whitespace; before, the length check caught
+      these first and there was nothing left to tell them apart by.
+    */
+    if (spaced) {
+        throw new TimeRangeError(`${optionName} "${input}" puts a space between a number and its unit. ` +
+            `Write them together: ${input.trim().replace(/(\d)\s+([a-z])/giu, '$1$2')}`);
+    }
     return signed(total);
 }
 function assertFinite(value, optionName, input, allowNegative) {

package/dist/convert/time-range.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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Parsing for the time-range options.\n \n Researchers write offsets in whatever form is natural for the recording in front\n * of them: seconds for a short ECG strip, `30m` into a sleep study, `01:23:45` when\n * reading off a clock. All three are accepted; anything ambiguous is rejected with\n * a message that shows the forms that work.\n /\n\nimport { fixed, formatDuration } from '../format/number.js';\n\nexport class TimeRangeError extends Error {\n constructor(message: string) {\n super(message);\n this.name = 'TimeRangeError';\n }\n}\n\n/\n Every spelling of a unit this accepts, and what one of it is worth in seconds.\n \n Exported so the spellings can be enumerated by a test rather than listed a second time:\n * twelve of these sixteen are named nowhere in the tool or its documentation, and none of\n * their values was checked by anything. `hrs: 360` would have converted `--start 2hrs` from\n * twelve minutes in and said nothing, which is the one kind of mistake a window may not make.\n /\nexport const UNIT_SECONDS: Record<string, number> = {\n h: 3600,\n hr: 3600,\n hrs: 3600,\n hour: 3600,\n hours: 3600,\n m: 60,\n min: 60,\n mins: 60,\n minute: 60,\n minutes: 60,\n s: 1,\n sec: 1,\n secs: 1,\n second: 1,\n seconds: 1,\n ms: 0.001,\n};\n\nconst CLOCK = /^(?:(\\d+):)?(\\d{1,2}):(\\d{1,2}(?:\\.\\d+)?)$/u;\nconst UNIT_TOKEN = /(\\d+(?:\\.\\d+)?)\\s([a-z]+)/giu;\n\n/*\n Parse a duration or offset into seconds.\n \n Accepted: `90`, `90s`, `5m`, `1h30m`, `1h 30m 15s`, `00:30:00`, `30:00`, `250ms`.\n \n `allowNegative` is for the two options that name a position rather than a length.\n \n A recording is timed from its first record's timekeeping annotation, and nothing obliges that\n * to sit at or after zero: a file whose records run from -100 s to -97 s is one this tool reads,\n * times from -100, and describes with\n \n Timed from -100.000s (first sample; --start and --end use this clock)\n \n That line says the number can be typed straight back in, and it could not be. Every offset\n * such a recording has came back as \"not a time I understand\", so its whole clock was\n * unreachable and no window of it could be converted at all — the one file shape where a\n * window is refused for naming a moment the recording actually contains.\n \n A length below zero is still a different thing, and `--duration` still refuses one.\n /\nexport function parseTimeSpec(input: string, optionName: string, allowNegative = false): number {\n const trimmed = input.trim().toLowerCase();\n if (trimmed === '') {\n throw new TimeRangeError(`${optionName} is empty. Try a value like 30s, 5m, or 00:30:00.`);\n }\n\n /\n The sign is read off the front and applied to the whole value, so `-1h30m` is an hour and a\n half before the origin rather than an hour before it and half an hour after.\n\n Nothing may sit between the sign and the number, and a leading `+` is still refused: every\n other number this tool takes is refused when written in a form nobody types, and `+5` is\n exactly what `--decimals` and `--jobs` reject one flag over.\n /\n const negative = trimmed.startsWith('-');\n const text = negative ? trimmed.slice(1) : trimmed;\n const signed = (seconds: number): number =>\n assertFinite(negative ? -seconds : seconds, optionName, input, allowNegative);\n\n // Bare number means seconds.\n if (/^\\d+(?:\\.\\d+)?$/u.test(text)) return signed(Number(text));\n\n // Clock form: hh:mm:ss or mm:ss.\n const clock = CLOCK.exec(text);\n if (clock) {\n const hours = clock[1] === undefined ? 0 : Number(clock[1]);\n const minutes = Number(clock[2]);\n const seconds = Number(clock[3]);\n if (minutes >= 60 \|\| seconds >= 60) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" has a minutes or seconds field of 60 or more.`,\n );\n }\n return signed(hours 3600 + minutes * 60 + seconds);\n }\n\n // Unit form: 1h30m, 5 min, 250ms.\n UNIT_TOKEN.lastIndex = 0;\n let total = 0;\n let matched = 0;\n let consumed = 0;\n let match: RegExpExecArray \| null;\n // Which units have already been seen, so a repeat can be rejected rather than added.\n const seen = new Set<number>();\n while ((match = UNIT_TOKEN.exec(text)) !== null) {\n const amount = Number(match[1]);\n const unit = match[2] ?? '';\n const scale = UNIT_SECONDS[unit];\n if (scale === undefined) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" uses an unknown unit \"${unit}\". Use h, m, s or ms, ` +\n `or their long forms: hours, minutes, seconds.`,\n );\n }\n\n // \"1h1h\" is a typo, not a request for two hours. Summing repeated units silently\n // turned a slip into a plausible window that was quietly the wrong length. Units are\n // keyed by their scale so the aliases collapse together: \"1h30min20m\" is caught too.\n if (seen.has(scale)) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" gives the same unit twice. ` +\n `Combine each unit once, as in 1h30m.`,\n );\n }\n seen.add(scale);\n\n total += amount * scale;\n matched++;\n consumed += match[0].length;\n }\n\n // Reject partially-understood input like \"5x\" or \"1h banana\".\n if (matched === 0 \|\| consumed !== text.replace(/\\s+/gu, '').length) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" is not a time I understand. ` +\n `Try 30s, 5m, 1h30m, 00:30:00, or a plain number of seconds.`,\n );\n }\n\n return signed(total);\n}\n\nfunction assertFinite(\n value: number,\n optionName: string,\n input: string,\n allowNegative: boolean,\n): number {\n if (!Number.isFinite(value) \|\| (!allowNegative && value < 0)) {\n throw new TimeRangeError(`${optionName} \"${input}\" is not a valid non-negative time.`);\n }\n return value;\n}\n\nexport interface ResolvedRange {\n /** Inclusive start, in seconds from the beginning of the recording. /\n startSeconds: number;\n /* Exclusive end, in seconds. /\n endSeconds: number;\n /* First data record touching the window. /\n startRecord: number;\n /* One past the last data record touching the window. /\n endRecord: number;\n /* True when the window covers the whole recording. /\n isWholeRecording: boolean;\n /* Earliest record start, including EDF+D timing gaps. /\n recordingStartSeconds: number;\n /* End of the latest record, including EDF+D timing gaps. /\n recordingEndSeconds: number;\n}\n\n/\n Slack for comparisons at sample/window boundaries.\n \n A nanosecond is far below any real sampling interval — 20 kHz is 50 microseconds — so it\n * absorbs the arithmetic error in `recordStart + sample / rate` without reaching a\n * neighbouring sample.\n /\nexport const BOUNDARY_TOLERANCE = 1e-9;\n\n/\n The slack to use for a channel sampled this often.\n \n Never as much as half a sample interval, because slack that reaches the next sample stops\n * being slack. A fixed nanosecond was applied whatever the rate, and the format does not\n * oblige the interval to be larger than it: EDF's record duration is an 8-character field\n * that accepts `1e-9`. A recording of two 1 ns records holding ten samples each wrote ten of\n * its twenty rows — the window ends at 2e-9, the comparison asked for `time < 2e-9 - 1e-9`,\n * and the entire second record failed it. Exit 0, no warning, half the samples gone.\n /\nexport function toleranceFor(rate: number): number {\n if (!(rate > 0) \|\| !Number.isFinite(rate)) return BOUNDARY_TOLERANCE;\n return Math.min(BOUNDARY_TOLERANCE, 1 / rate / 2);\n}\n\n/* Match the exact half-open boundary rules used while writing signal rows. /\nexport function sampleTimeIsInRange(\n time: number,\n startSeconds: number,\n endSeconds: number,\n tolerance: number = BOUNDARY_TOLERANCE,\n): boolean {\n return time >= startSeconds - tolerance && time < endSeconds - tolerance;\n}\n\n/* Count samples from one record that fall inside a half-open requested window. /\nexport function countSamplesInRange(options: {\n recordStart: number;\n rate: number;\n samplesPerRecord: number;\n startSeconds: number;\n endSeconds: number;\n}): number {\n const slack = toleranceFor(options.rate);\n const lower = Math.ceil(\n (options.startSeconds - slack - options.recordStart) options.rate,\n );\n const upper = Math.ceil(\n (options.endSeconds - slack - options.recordStart) * options.rate,\n );\n const first = Math.max(0, Math.min(options.samplesPerRecord, lower));\n const last = Math.max(0, Math.min(options.samplesPerRecord, upper));\n return Math.max(0, last - first);\n}\n\n/*\n Whether two instants differ only by the arithmetic that produced them.\n \n A relative epsilon, because the gap between doubles grows with magnitude — the same shape\n * the long layout uses to decide two sample times are one instant. Well below any real sample\n * interval, and well above the rounding that two routes to one quantity produce: a recording's\n * length is `recordCount * recordDuration`, which for 6003 records of 0.1s is not the 600.3 it\n * prints as.\n /\nfunction sameInstant(a: number, b: number): boolean {\n return Math.abs(a - b) <= Math.max(Math.abs(a), Math.abs(b)) 1e-12;\n}\n\n/*\n Turn a requested window into both an exact time span and the record range that\n * contains it. Records are the unit the file can be read in; the exact span is what\n * decides which samples inside those records are actually written.\n /\nexport function resolveRange(options: {\n start?: number \| undefined;\n /* The `--start` value exactly as typed, quoted back in the past-the-end error. /\n startText?: string \| undefined;\n duration?: number \| undefined;\n end?: number \| undefined;\n /* The `--end` value exactly as typed, quoted back in the window error. /\n endText?: string \| undefined;\n recordDuration: number;\n recordCount: number;\n /\n True start time of each data record, for discontinuous files. When absent,\n * records are assumed to sit end to end.\n /\n recordStarts?: Float64Array \| null \| undefined;\n}): ResolvedRange {\n // For a continuous file the recording spans recordCount recordDuration. A\n // discontinuous one does not: a 10-second recording with a 95-second gap in the\n // middle still ends at 105 seconds. Deriving the span from the records' real\n // positions is what stops a requested window from being clipped back to the\n // amount of data in the file and silently discarding everything past it.\n const { earliest, latest } = span(options.recordStarts, options.recordCount, options.recordDuration);\n\n if (options.duration !== undefined && options.end !== undefined) {\n throw new TimeRangeError('Use either --duration or --end, not both.');\n }\n\n const startSeconds = options.start ?? earliest;\n\n let endSeconds: number;\n if (options.duration !== undefined) endSeconds = startSeconds + options.duration;\n else if (options.end !== undefined) endSeconds = options.end;\n else endSeconds = latest;\n\n /\n At the end, allowing for the arithmetic that produced the end.\n\n `latest` is `recordCount recordDuration`, and with a fractional duration that is not the\n number it prints as: 6003 records of 0.1s is 600.3000000000001, not 600.3. So `--start\n 600.3` on a recording `--info` calls \"10m 0.3s\" was accepted by a hair, converted nothing,\n and exited 0 with a signals.csv holding its header — which is the empty conversion this\n error exists to prevent, and which the same command on a whole-second recording is refused\n for.\n\n A relative epsilon, the same shape the long layout uses to decide two sample times are one\n instant: well below any real interval, and well above the rounding that two different\n routes to the same quantity produce.\n /\n if (startSeconds >= latest \|\| sameInstant(startSeconds, latest)) {\n /\n Quote what was typed. Reporting the parsed seconds meant `--start 4h` came back as\n \"--start 14400s is at or past the end\", which reads as a value the user never gave.\n\n In quotation marks, which the parse errors above have always used and this did not.\n Without them the value ran into the sentence: `--start \" 5s \"` printed as\n `--start 5s is at or past the end`, where the value appears to be `5s is` and\n the surrounding spaces — the actual reason a shell-built argument went wrong — are\n invisible.\n /\n throw new TimeRangeError(\n /\n The recording's length in the same words --info uses for it.\n\n `formatSeconds` renders a bare number of seconds, so this message and the Duration\n line disagreed about one file in one session: --info said \"6m 40s\" and the error said\n \"400s\". On an overnight recording it read \"7950s recording\", leaving the reader to\n divide by 3600 to find out whether their --start was reasonable — which is the one\n question this message exists to answer. cli-reference.md has always documented it\n humanised (\"2h 12m 30s\"), a form no input could produce.\n\n The typed value keeps `quoted`, since that is the user's own text and should come\n back exactly as they wrote it.\n /\n /\n `latest` is where the recording ends on its own clock, which is its length only when\n it starts at zero. A file timed from its first record's timekeeping TAL need not: one\n whose records run 1000s to 1003s is three seconds long, and this called it \"this\n 16m 43s recording\" — while --info two lines away said \"Duration 3s\". Where the\n recording sits is the useful thing to say in that case, and it is the number --start\n has to be given.\n /\n earliest === 0\n ? `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n `${formatDuration(latest)} recording.`\n : `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n `${formatDuration(latest - earliest)} recording, which runs from ` +\n `${formatSeconds(earliest)} to ${formatSeconds(latest)}.`,\n );\n }\n if (endSeconds <= startSeconds) {\n // Quote whatever the caller actually gave, for the same reason as the error above. The\n // end is only echoed when --end was passed: with --duration the end is computed here,\n // so there is no typed value to quote and the arithmetic result is the honest thing.\n const endShown =\n options.end !== undefined && options.endText !== undefined\n ? quoted(options.endText, endSeconds)\n : formatSeconds(endSeconds);\n const startShown = quoted(options.startText, startSeconds);\n throw new TimeRangeError(\n `The requested window ends at ${endShown}, which is not after its start at ${startShown}.`,\n );\n }\n\n const clampedEnd = Math.min(endSeconds, latest);\n const { startRecord, endRecord } = selectRecords(options, startSeconds, clampedEnd);\n\n return {\n startSeconds,\n endSeconds: clampedEnd,\n startRecord,\n endRecord,\n /\n The same rounding, one field over.\n\n `latest` is `recordCount * recordDuration`, and 6003 records of 0.1s is\n 600.3000000000001. So `--end 600.3` on a recording of exactly that length wrote every\n sample it has — byte-identical to a bare conversion — and metadata.json recorded\n `whole_recording: false` for it, while the bare run recorded true. One conversion, two\n answers, on the field a pipeline reads to decide whether it has the lot.\n /\n isWholeRecording:\n (startSeconds <= earliest \|\| sameInstant(startSeconds, earliest)) &&\n (clampedEnd >= latest \|\| sameInstant(clampedEnd, latest)),\n recordingStartSeconds: earliest,\n recordingEndSeconds: latest,\n };\n}\n\nfunction span(\n recordStarts: Float64Array \| null \| undefined,\n recordCount: number,\n recordDuration: number,\n): { earliest: number; latest: number } {\n if (!recordStarts \|\| recordStarts.length === 0) {\n return { earliest: 0, latest: recordCount recordDuration };\n }\n let earliest = Infinity;\n let latest = -Infinity;\n for (const start of recordStarts) {\n if (start < earliest) earliest = start;\n if (start + recordDuration > latest) latest = start + recordDuration;\n }\n if (!Number.isFinite(earliest) \|\| !Number.isFinite(latest)) {\n return { earliest: 0, latest: recordCount * recordDuration };\n }\n return { earliest, latest };\n}\n\n/** Every record whose own time span overlaps the requested window. /\nfunction selectRecords(\n options: { recordDuration: number; recordCount: number; recordStarts?: Float64Array \| null \| undefined },\n startSeconds: number,\n endSeconds: number,\n): { startRecord: number; endRecord: number } {\n const starts = options.recordStarts;\n if (!starts \|\| starts.length === 0) {\n return {\n startRecord: Math.max(0, Math.floor(startSeconds / options.recordDuration)),\n endRecord: Math.min(options.recordCount, Math.ceil(endSeconds / options.recordDuration)),\n };\n }\n\n let first = options.recordCount;\n let last = 0;\n for (let i = 0; i < starts.length; i++) {\n const begin = starts[i] ?? 0;\n if (begin + options.recordDuration > startSeconds && begin < endSeconds) {\n if (i < first) first = i;\n if (i + 1 > last) last = i + 1;\n }\n }\n return first < last ? { startRecord: first, endRecord: last } : { startRecord: 0, endRecord: 0 };\n}\n\n/\n The value as the caller typed it, in quotation marks, or the parsed seconds if they gave\n * none. The marks show where the value begins and ends, which matters most for the values\n * that went wrong because of what surrounds them.\n /\nfunction quoted(text: string \| undefined, seconds: number): string {\n return text === undefined ? formatSeconds(seconds) : `\"${text}\"`;\n}\n\nfunction formatSeconds(seconds: number): string {\n /\n The same 1e21 cliff, in the bounds this message hands back.\n\n `--start \"9e21\"` was answered with \"is at or past the end of this 3e+21s recording, which\n runs from 1e+21s to 4e+21s\" — a sentence whose whole purpose is to say what window there\n is to ask for, ending in two tokens the parser refuses: `--start 1e+21s` is \"uses an\n unknown unit \\\"e\\\"\". `Number(...)` was here to drop the trailing zeros, and it also\n re-introduced the exponent form that `toFixed` had produced.\n */\n const text = fixed(seconds, 3);\n return `${text.includes('.') ? text.replace(/\\.?0+$/u, '') : text}s`;\n}\n"]}
1	+ 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Parsing for the time-range options.\n \n Researchers write offsets in whatever form is natural for the recording in front\n * of them: seconds for a short ECG strip, `30m` into a sleep study, `01:23:45` when\n * reading off a clock. All three are accepted; anything ambiguous is rejected with\n * a message that shows the forms that work.\n /\n\nimport { fixed, formatDuration } from '../format/number.js';\n\nexport class TimeRangeError extends Error {\n constructor(message: string) {\n super(message);\n this.name = 'TimeRangeError';\n }\n}\n\n/\n Every spelling of a unit this accepts, and what one of it is worth in seconds.\n \n Exported so the spellings can be enumerated by a test rather than listed a second time:\n * twelve of these sixteen are named nowhere in the tool or its documentation, and none of\n * their values was checked by anything. `hrs: 360` would have converted `--start 2hrs` from\n * twelve minutes in and said nothing, which is the one kind of mistake a window may not make.\n /\nexport const UNIT_SECONDS: Record<string, number> = {\n h: 3600,\n hr: 3600,\n hrs: 3600,\n hour: 3600,\n hours: 3600,\n m: 60,\n min: 60,\n mins: 60,\n minute: 60,\n minutes: 60,\n s: 1,\n sec: 1,\n secs: 1,\n second: 1,\n seconds: 1,\n ms: 0.001,\n};\n\nconst CLOCK = /^(?:(\\d+):)?(\\d{1,2}):(\\d{1,2}(?:\\.\\d+)?)$/u;\nconst UNIT_TOKEN = /(\\d+(?:\\.\\d+)?)\\s([a-z]+)/giu;\n\n/*\n Parse a duration or offset into seconds.\n \n Accepted: `90`, `90s`, `5m`, `1h30m`, `1h 30m 15s`, `00:30:00`, `30:00`, `250ms`.\n \n `allowNegative` is for the two options that name a position rather than a length.\n \n A recording is timed from its first record's timekeeping annotation, and nothing obliges that\n * to sit at or after zero: a file whose records run from -100 s to -97 s is one this tool reads,\n * times from -100, and describes with\n \n Timed from -100.000s (first sample; --start and --end use this clock)\n \n That line says the number can be typed straight back in, and it could not be. Every offset\n * such a recording has came back as \"not a time I understand\", so its whole clock was\n * unreachable and no window of it could be converted at all — the one file shape where a\n * window is refused for naming a moment the recording actually contains.\n \n A length below zero is still a different thing, and `--duration` still refuses one.\n /\nexport function parseTimeSpec(input: string, optionName: string, allowNegative = false): number {\n const trimmed = input.trim().toLowerCase();\n if (trimmed === '') {\n throw new TimeRangeError(`${optionName} is empty. Try a value like 30s, 5m, or 00:30:00.`);\n }\n\n /\n The sign is read off the front and applied to the whole value, so `-1h30m` is an hour and a\n half before the origin rather than an hour before it and half an hour after.\n\n Nothing may sit between the sign and the number, and a leading `+` is still refused: every\n other number this tool takes is refused when written in a form nobody types, and `+5` is\n exactly what `--decimals` and `--jobs` reject one flag over.\n /\n const negative = trimmed.startsWith('-');\n const text = negative ? trimmed.slice(1) : trimmed;\n const signed = (seconds: number): number =>\n assertFinite(negative ? -seconds : seconds, optionName, input, allowNegative);\n\n // Bare number means seconds.\n if (/^\\d+(?:\\.\\d+)?$/u.test(text)) return signed(Number(text));\n\n // Clock form: hh:mm:ss or mm:ss.\n const clock = CLOCK.exec(text);\n if (clock) {\n const hours = clock[1] === undefined ? 0 : Number(clock[1]);\n const minutes = Number(clock[2]);\n const seconds = Number(clock[3]);\n if (minutes >= 60 \|\| seconds >= 60) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" has a minutes or seconds field of 60 or more.`,\n );\n }\n return signed(hours 3600 + minutes * 60 + seconds);\n }\n\n // Unit form: 1h30m, 1h30m 15s, 250ms. A number sits directly against its unit; see below.\n UNIT_TOKEN.lastIndex = 0;\n let total = 0;\n let matched = 0;\n let consumed = 0;\n /** Whether any token had a space between its number and its unit. See the refusal below. /\n let spaced = false;\n let match: RegExpExecArray \| null;\n // Which units have already been seen, so a repeat can be rejected rather than added.\n const seen = new Set<number>();\n while ((match = UNIT_TOKEN.exec(text)) !== null) {\n const amount = Number(match[1]);\n const unit = match[2] ?? '';\n const scale = UNIT_SECONDS[unit];\n if (scale === undefined) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" uses an unknown unit \"${unit}\". Use h, m, s or ms, ` +\n `or their long forms: hours, minutes, seconds.`,\n );\n }\n\n // \"1h1h\" is a typo, not a request for two hours. Summing repeated units silently\n // turned a slip into a plausible window that was quietly the wrong length. Units are\n // keyed by their scale so the aliases collapse together: \"1h30min20m\" is caught too.\n if (seen.has(scale)) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" gives the same unit twice. ` +\n `Combine each unit once, as in 1h30m.`,\n );\n }\n seen.add(scale);\n\n total += amount scale;\n matched++;\n // Counted with the whitespace taken out, so the comparison below is against the same\n // string on both sides and a space inside a token reaches the refusal written for it\n // rather than the one about input that could not be read at all.\n consumed += match[0].replace(/\\s+/gu, '').length;\n if (/\\s/u.test(match[0])) spaced = true;\n }\n\n // Reject partially-understood input like \"5x\" or \"1h banana\".\n if (matched === 0 \|\| consumed !== text.replace(/\\s+/gu, '').length) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" is not a time I understand. ` +\n `Try 30s, 5m, 1h30m, 00:30:00, or a plain number of seconds.`,\n );\n }\n\n /\n A space between a number and its unit, named as such.\n\n `5 min` is refused on purpose — cli-reference sets the rule out, and it is what keeps\n `1 2h` from being read as anything — but it came back as \"is not a time I understand. Try\n 30s, 5m, 1h30m, 00:30:00, or a plain number of seconds\", which is the message for input\n that could not be read at all. Every part of `5 min` was read: the number parsed, the unit\n was looked up in the table and found. The one thing wrong with it is a space, and the\n reader was sent to re-check their unit spellings instead — with `5m` sitting in the list of\n suggestions, differing from what they typed by a character they cannot see is the problem.\n\n Only reachable now that the count above ignores whitespace; before, the length check caught\n these first and there was nothing left to tell them apart by.\n /\n if (spaced) {\n throw new TimeRangeError(\n `${optionName} \"${input}\" puts a space between a number and its unit. ` +\n `Write them together: ${input.trim().replace(/(\\d)\\s+([a-z])/giu, '$1$2')}`,\n );\n }\n\n return signed(total);\n}\n\nfunction assertFinite(\n value: number,\n optionName: string,\n input: string,\n allowNegative: boolean,\n): number {\n if (!Number.isFinite(value) \|\| (!allowNegative && value < 0)) {\n throw new TimeRangeError(`${optionName} \"${input}\" is not a valid non-negative time.`);\n }\n return value;\n}\n\nexport interface ResolvedRange {\n /** Inclusive start, in seconds from the beginning of the recording. /\n startSeconds: number;\n /* Exclusive end, in seconds. /\n endSeconds: number;\n /* First data record touching the window. /\n startRecord: number;\n /* One past the last data record touching the window. /\n endRecord: number;\n /* True when the window covers the whole recording. /\n isWholeRecording: boolean;\n /* Earliest record start, including EDF+D timing gaps. /\n recordingStartSeconds: number;\n /* End of the latest record, including EDF+D timing gaps. /\n recordingEndSeconds: number;\n}\n\n/\n Slack for comparisons at sample/window boundaries.\n \n A nanosecond is far below any real sampling interval — 20 kHz is 50 microseconds — so it\n * absorbs the arithmetic error in `recordStart + sample / rate` without reaching a\n * neighbouring sample.\n /\nexport const BOUNDARY_TOLERANCE = 1e-9;\n\n/\n The slack to use for a channel sampled this often.\n \n Never as much as half a sample interval, because slack that reaches the next sample stops\n * being slack. A fixed nanosecond was applied whatever the rate, and the format does not\n * oblige the interval to be larger than it: EDF's record duration is an 8-character field\n * that accepts `1e-9`. A recording of two 1 ns records holding ten samples each wrote ten of\n * its twenty rows — the window ends at 2e-9, the comparison asked for `time < 2e-9 - 1e-9`,\n * and the entire second record failed it. Exit 0, no warning, half the samples gone.\n /\nexport function toleranceFor(rate: number): number {\n if (!(rate > 0) \|\| !Number.isFinite(rate)) return BOUNDARY_TOLERANCE;\n return Math.min(BOUNDARY_TOLERANCE, 1 / rate / 2);\n}\n\n/* Match the exact half-open boundary rules used while writing signal rows. /\nexport function sampleTimeIsInRange(\n time: number,\n startSeconds: number,\n endSeconds: number,\n tolerance: number = BOUNDARY_TOLERANCE,\n): boolean {\n return time >= startSeconds - tolerance && time < endSeconds - tolerance;\n}\n\n/* Count samples from one record that fall inside a half-open requested window. /\nexport function countSamplesInRange(options: {\n recordStart: number;\n rate: number;\n samplesPerRecord: number;\n startSeconds: number;\n endSeconds: number;\n}): number {\n const slack = toleranceFor(options.rate);\n const lower = Math.ceil(\n (options.startSeconds - slack - options.recordStart) options.rate,\n );\n const upper = Math.ceil(\n (options.endSeconds - slack - options.recordStart) * options.rate,\n );\n const first = Math.max(0, Math.min(options.samplesPerRecord, lower));\n const last = Math.max(0, Math.min(options.samplesPerRecord, upper));\n return Math.max(0, last - first);\n}\n\n/*\n Whether two instants differ only by the arithmetic that produced them.\n \n A relative epsilon, because the gap between doubles grows with magnitude — the same shape\n * the long layout uses to decide two sample times are one instant. Well below any real sample\n * interval, and well above the rounding that two routes to one quantity produce: a recording's\n * length is `recordCount * recordDuration`, which for 6003 records of 0.1s is not the 600.3 it\n * prints as.\n /\nfunction sameInstant(a: number, b: number): boolean {\n return Math.abs(a - b) <= Math.max(Math.abs(a), Math.abs(b)) 1e-12;\n}\n\n/*\n Turn a requested window into both an exact time span and the record range that\n * contains it. Records are the unit the file can be read in; the exact span is what\n * decides which samples inside those records are actually written.\n /\nexport function resolveRange(options: {\n start?: number \| undefined;\n /* The `--start` value exactly as typed, quoted back in the past-the-end error. /\n startText?: string \| undefined;\n duration?: number \| undefined;\n end?: number \| undefined;\n /* The `--end` value exactly as typed, quoted back in the window error. /\n endText?: string \| undefined;\n recordDuration: number;\n recordCount: number;\n /\n True start time of each data record, for discontinuous files. When absent,\n * records are assumed to sit end to end.\n /\n recordStarts?: Float64Array \| null \| undefined;\n}): ResolvedRange {\n // For a continuous file the recording spans recordCount recordDuration. A\n // discontinuous one does not: a 10-second recording with a 95-second gap in the\n // middle still ends at 105 seconds. Deriving the span from the records' real\n // positions is what stops a requested window from being clipped back to the\n // amount of data in the file and silently discarding everything past it.\n const { earliest, latest } = span(options.recordStarts, options.recordCount, options.recordDuration);\n\n if (options.duration !== undefined && options.end !== undefined) {\n throw new TimeRangeError('Use either --duration or --end, not both.');\n }\n\n const startSeconds = options.start ?? earliest;\n\n let endSeconds: number;\n if (options.duration !== undefined) endSeconds = startSeconds + options.duration;\n else if (options.end !== undefined) endSeconds = options.end;\n else endSeconds = latest;\n\n /\n At the end, allowing for the arithmetic that produced the end.\n\n `latest` is `recordCount recordDuration`, and with a fractional duration that is not the\n number it prints as: 6003 records of 0.1s is 600.3000000000001, not 600.3. So `--start\n 600.3` on a recording `--info` calls \"10m 0.3s\" was accepted by a hair, converted nothing,\n and exited 0 with a signals.csv holding its header — which is the empty conversion this\n error exists to prevent, and which the same command on a whole-second recording is refused\n for.\n\n A relative epsilon, the same shape the long layout uses to decide two sample times are one\n instant: well below any real interval, and well above the rounding that two different\n routes to the same quantity produce.\n /\n if (startSeconds >= latest \|\| sameInstant(startSeconds, latest)) {\n /\n Quote what was typed. Reporting the parsed seconds meant `--start 4h` came back as\n \"--start 14400s is at or past the end\", which reads as a value the user never gave.\n\n In quotation marks, which the parse errors above have always used and this did not.\n Without them the value ran into the sentence: `--start \" 5s \"` printed as\n `--start 5s is at or past the end`, where the value appears to be `5s is` and\n the surrounding spaces — the actual reason a shell-built argument went wrong — are\n invisible.\n /\n throw new TimeRangeError(\n /\n The recording's length in the same words --info uses for it.\n\n `formatSeconds` renders a bare number of seconds, so this message and the Duration\n line disagreed about one file in one session: --info said \"6m 40s\" and the error said\n \"400s\". On an overnight recording it read \"7950s recording\", leaving the reader to\n divide by 3600 to find out whether their --start was reasonable — which is the one\n question this message exists to answer. cli-reference.md has always documented it\n humanised (\"2h 12m 30s\"), a form no input could produce.\n\n The typed value keeps `quoted`, since that is the user's own text and should come\n back exactly as they wrote it.\n /\n /\n `latest` is where the recording ends on its own clock, which is its length only when\n it starts at zero. A file timed from its first record's timekeeping TAL need not: one\n whose records run 1000s to 1003s is three seconds long, and this called it \"this\n 16m 43s recording\" — while --info two lines away said \"Duration 3s\". Where the\n recording sits is the useful thing to say in that case, and it is the number --start\n has to be given.\n /\n earliest === 0\n ? `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n `${formatDuration(latest)} recording.`\n : `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n `${formatDuration(latest - earliest)} recording, which runs from ` +\n `${formatSeconds(earliest)} to ${formatSeconds(latest)}.`,\n );\n }\n if (endSeconds <= startSeconds) {\n // Quote whatever the caller actually gave, for the same reason as the error above. The\n // end is only echoed when --end was passed: with --duration the end is computed here,\n // so there is no typed value to quote and the arithmetic result is the honest thing.\n const endShown =\n options.end !== undefined && options.endText !== undefined\n ? quoted(options.endText, endSeconds)\n : formatSeconds(endSeconds);\n const startShown = quoted(options.startText, startSeconds);\n throw new TimeRangeError(\n `The requested window ends at ${endShown}, which is not after its start at ${startShown}.`,\n );\n }\n\n const clampedEnd = Math.min(endSeconds, latest);\n const { startRecord, endRecord } = selectRecords(options, startSeconds, clampedEnd);\n\n return {\n startSeconds,\n endSeconds: clampedEnd,\n startRecord,\n endRecord,\n /\n The same rounding, one field over.\n\n `latest` is `recordCount * recordDuration`, and 6003 records of 0.1s is\n 600.3000000000001. So `--end 600.3` on a recording of exactly that length wrote every\n sample it has — byte-identical to a bare conversion — and metadata.json recorded\n `whole_recording: false` for it, while the bare run recorded true. One conversion, two\n answers, on the field a pipeline reads to decide whether it has the lot.\n /\n isWholeRecording:\n (startSeconds <= earliest \|\| sameInstant(startSeconds, earliest)) &&\n (clampedEnd >= latest \|\| sameInstant(clampedEnd, latest)),\n recordingStartSeconds: earliest,\n recordingEndSeconds: latest,\n };\n}\n\nfunction span(\n recordStarts: Float64Array \| null \| undefined,\n recordCount: number,\n recordDuration: number,\n): { earliest: number; latest: number } {\n if (!recordStarts \|\| recordStarts.length === 0) {\n return { earliest: 0, latest: recordCount recordDuration };\n }\n let earliest = Infinity;\n let latest = -Infinity;\n for (const start of recordStarts) {\n if (start < earliest) earliest = start;\n if (start + recordDuration > latest) latest = start + recordDuration;\n }\n if (!Number.isFinite(earliest) \|\| !Number.isFinite(latest)) {\n return { earliest: 0, latest: recordCount * recordDuration };\n }\n return { earliest, latest };\n}\n\n/** Every record whose own time span overlaps the requested window. /\nfunction selectRecords(\n options: { recordDuration: number; recordCount: number; recordStarts?: Float64Array \| null \| undefined },\n startSeconds: number,\n endSeconds: number,\n): { startRecord: number; endRecord: number } {\n const starts = options.recordStarts;\n if (!starts \|\| starts.length === 0) {\n return {\n startRecord: Math.max(0, Math.floor(startSeconds / options.recordDuration)),\n endRecord: Math.min(options.recordCount, Math.ceil(endSeconds / options.recordDuration)),\n };\n }\n\n let first = options.recordCount;\n let last = 0;\n for (let i = 0; i < starts.length; i++) {\n const begin = starts[i] ?? 0;\n if (begin + options.recordDuration > startSeconds && begin < endSeconds) {\n if (i < first) first = i;\n if (i + 1 > last) last = i + 1;\n }\n }\n return first < last ? { startRecord: first, endRecord: last } : { startRecord: 0, endRecord: 0 };\n}\n\n/\n The value as the caller typed it, in quotation marks, or the parsed seconds if they gave\n * none. The marks show where the value begins and ends, which matters most for the values\n * that went wrong because of what surrounds them.\n /\nfunction quoted(text: string \| undefined, seconds: number): string {\n return text === undefined ? formatSeconds(seconds) : `\"${text}\"`;\n}\n\nfunction formatSeconds(seconds: number): string {\n /\n The same 1e21 cliff, in the bounds this message hands back.\n\n `--start \"9e21\"` was answered with \"is at or past the end of this 3e+21s recording, which\n runs from 1e+21s to 4e+21s\" — a sentence whose whole purpose is to say what window there\n is to ask for, ending in two tokens the parser refuses: `--start 1e+21s` is \"uses an\n unknown unit \\\"e\\\"\". `Number(...)` was here to drop the trailing zeros, and it also\n re-introduced the exponent form that `toFixed` had produced.\n */\n const text = fixed(seconds, 3);\n return `${text.includes('.') ? text.replace(/\\.?0+$/u, '') : text}s`;\n}\n"]}

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.7.101",
+  "version": "0.7.102",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",