edf2csv 0.5.89 → 0.5.91

package/dist/convert/time-range.js

@@ -156,7 +156,23 @@ export function resolveRange(options) {
         endSeconds = options.end;
     else
         endSeconds = latest;
-    if (startSeconds >= latest) {
+    /*
+      At the end, allowing for the arithmetic that produced the end.
+  
+      `latest` is `recordCount * recordDuration`, and with a fractional duration that is not the
+      number it prints as: 6003 records of 0.1s is 600.3000000000001, not 600.3. So `--start
+      600.3` on a recording `--info` calls "10m 0.3s" was accepted by a hair, converted nothing,
+      and exited 0 with a signals.csv holding its header — which is the empty conversion this
+      error exists to prevent, and which the same command on a whole-second recording is refused
+      for.
+  
+      A relative epsilon, the same shape the long layout uses to decide two sample times are one
+      instant: well below any real interval, and well above the rounding that two different
+      routes to the same quantity produce.
+    */
+    const atTheEnd = startSeconds >= latest ||
+        Math.abs(startSeconds - latest) <= Math.max(Math.abs(startSeconds), Math.abs(latest)) * 1e-12;
+    if (atTheEnd) {
         /*
           Quote what was typed. Reporting the parsed seconds meant `--start 4h` came back as
           "--start 14400s is at or past the end", which reads as a value the user never gave.

package/dist/convert/time-range.js.map

@@ -1 +1 @@
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* Parsing for the time-range options.\n *\n * Researchers write offsets in whatever form is natural for the recording in front\n * of them: seconds for a short ECG strip, `30m` into a sleep study, `01:23:45` when\n * reading off a clock. All three are accepted; anything ambiguous is rejected with\n * a message that shows the forms that work.\n */\n\nimport { formatDuration } from '../format/number.js';\n\nexport class TimeRangeError extends Error {\n  constructor(message: string) {\n    super(message);\n    this.name = 'TimeRangeError';\n  }\n}\n\nconst UNIT_SECONDS: Record<string, number> = {\n  h: 3600,\n  hr: 3600,\n  hrs: 3600,\n  hour: 3600,\n  hours: 3600,\n  m: 60,\n  min: 60,\n  mins: 60,\n  minute: 60,\n  minutes: 60,\n  s: 1,\n  sec: 1,\n  secs: 1,\n  second: 1,\n  seconds: 1,\n  ms: 0.001,\n};\n\nconst CLOCK = /^(?:(\\d+):)?(\\d{1,2}):(\\d{1,2}(?:\\.\\d+)?)$/u;\nconst UNIT_TOKEN = /(\\d+(?:\\.\\d+)?)\\s*([a-z]+)/giu;\n\n/**\n * Parse a duration or offset into seconds.\n *\n * Accepted: `90`, `90s`, `5m`, `1h30m`, `1h 30m 15s`, `00:30:00`, `30:00`, `250ms`.\n */\nexport function parseTimeSpec(input: string, optionName: string): number {\n  const text = input.trim().toLowerCase();\n  if (text === '') {\n    throw new TimeRangeError(`${optionName} is empty. Try a value like 30s, 5m, or 00:30:00.`);\n  }\n\n  // Bare number means seconds.\n  if (/^\\d+(?:\\.\\d+)?$/u.test(text)) return assertFinite(Number(text), optionName, input);\n\n  // Clock form: hh:mm:ss or mm:ss.\n  const clock = CLOCK.exec(text);\n  if (clock) {\n    const hours = clock[1] === undefined ? 0 : Number(clock[1]);\n    const minutes = Number(clock[2]);\n    const seconds = Number(clock[3]);\n    if (minutes >= 60 || seconds >= 60) {\n      throw new TimeRangeError(\n        `${optionName} \"${input}\" has a minutes or seconds field of 60 or more.`,\n      );\n    }\n    return assertFinite(hours * 3600 + minutes * 60 + seconds, optionName, input);\n  }\n\n  // Unit form: 1h30m, 5 min, 250ms.\n  UNIT_TOKEN.lastIndex = 0;\n  let total = 0;\n  let matched = 0;\n  let consumed = 0;\n  let match: RegExpExecArray | null;\n  // Which units have already been seen, so a repeat can be rejected rather than added.\n  const seen = new Set<number>();\n  while ((match = UNIT_TOKEN.exec(text)) !== null) {\n    const amount = Number(match[1]);\n    const unit = match[2] ?? '';\n    const scale = UNIT_SECONDS[unit];\n    if (scale === undefined) {\n      throw new TimeRangeError(\n        `${optionName} \"${input}\" uses an unknown unit \"${unit}\". Use h, m, s, or ms.`,\n      );\n    }\n\n    // \"1h1h\" is a typo, not a request for two hours. Summing repeated units silently\n    // turned a slip into a plausible window that was quietly the wrong length. Units are\n    // keyed by their scale so the aliases collapse together: \"1h30min20m\" is caught too.\n    if (seen.has(scale)) {\n      throw new TimeRangeError(\n        `${optionName} \"${input}\" gives the same unit twice. ` +\n          `Combine each unit once, as in 1h30m.`,\n      );\n    }\n    seen.add(scale);\n\n    total += amount * scale;\n    matched++;\n    consumed += match[0].length;\n  }\n\n  // Reject partially-understood input like \"5x\" or \"1h banana\".\n  if (matched === 0 || consumed !== text.replace(/\\s+/gu, '').length) {\n    throw new TimeRangeError(\n      `${optionName} \"${input}\" is not a time I understand. ` +\n        `Try 30s, 5m, 1h30m, 00:30:00, or a plain number of seconds.`,\n    );\n  }\n\n  return assertFinite(total, optionName, input);\n}\n\nfunction assertFinite(value: number, optionName: string, input: string): number {\n  if (!Number.isFinite(value) || value < 0) {\n    throw new TimeRangeError(`${optionName} \"${input}\" is not a valid non-negative time.`);\n  }\n  return value;\n}\n\nexport interface ResolvedRange {\n  /** Inclusive start, in seconds from the beginning of the recording. */\n  startSeconds: number;\n  /** Exclusive end, in seconds. */\n  endSeconds: number;\n  /** First data record touching the window. */\n  startRecord: number;\n  /** One past the last data record touching the window. */\n  endRecord: number;\n  /** True when the window covers the whole recording. */\n  isWholeRecording: boolean;\n  /** Earliest record start, including EDF+D timing gaps. */\n  recordingStartSeconds: number;\n  /** End of the latest record, including EDF+D timing gaps. */\n  recordingEndSeconds: number;\n}\n\n/**\n * Slack for comparisons at sample/window boundaries.\n *\n * A nanosecond is far below any real sampling interval — 20 kHz is 50 microseconds — so it\n * absorbs the arithmetic error in `recordStart + sample / rate` without reaching a\n * neighbouring sample.\n */\nexport const BOUNDARY_TOLERANCE = 1e-9;\n\n/**\n * The slack to use for a channel sampled this often.\n *\n * Never as much as half a sample interval, because slack that reaches the next sample stops\n * being slack. A fixed nanosecond was applied whatever the rate, and the format does not\n * oblige the interval to be larger than it: EDF's record duration is an 8-character field\n * that accepts `1e-9`. A recording of two 1 ns records holding ten samples each wrote ten of\n * its twenty rows — the window ends at 2e-9, the comparison asked for `time < 2e-9 - 1e-9`,\n * and the entire second record failed it. Exit 0, no warning, half the samples gone.\n */\nexport function toleranceFor(rate: number): number {\n  if (!(rate > 0) || !Number.isFinite(rate)) return BOUNDARY_TOLERANCE;\n  return Math.min(BOUNDARY_TOLERANCE, 1 / rate / 2);\n}\n\n/** Match the exact half-open boundary rules used while writing signal rows. */\nexport function sampleTimeIsInRange(\n  time: number,\n  startSeconds: number,\n  endSeconds: number,\n  tolerance: number = BOUNDARY_TOLERANCE,\n): boolean {\n  return time >= startSeconds - tolerance && time < endSeconds - tolerance;\n}\n\n/** Count samples from one record that fall inside a half-open requested window. */\nexport function countSamplesInRange(options: {\n  recordStart: number;\n  rate: number;\n  samplesPerRecord: number;\n  startSeconds: number;\n  endSeconds: number;\n}): number {\n  const slack = toleranceFor(options.rate);\n  const lower = Math.ceil(\n    (options.startSeconds - slack - options.recordStart) * options.rate,\n  );\n  const upper = Math.ceil(\n    (options.endSeconds - slack - options.recordStart) * options.rate,\n  );\n  const first = Math.max(0, Math.min(options.samplesPerRecord, lower));\n  const last = Math.max(0, Math.min(options.samplesPerRecord, upper));\n  return Math.max(0, last - first);\n}\n\n/**\n * Turn a requested window into both an exact time span and the record range that\n * contains it. Records are the unit the file can be read in; the exact span is what\n * decides which samples inside those records are actually written.\n */\nexport function resolveRange(options: {\n  start?: number | undefined;\n  /** The `--start` value exactly as typed, quoted back in the past-the-end error. */\n  startText?: string | undefined;\n  duration?: number | undefined;\n  end?: number | undefined;\n  /** The `--end` value exactly as typed, quoted back in the window error. */\n  endText?: string | undefined;\n  recordDuration: number;\n  recordCount: number;\n  /**\n   * True start time of each data record, for discontinuous files. When absent,\n   * records are assumed to sit end to end.\n   */\n  recordStarts?: Float64Array | null | undefined;\n}): ResolvedRange {\n  // For a continuous file the recording spans recordCount * recordDuration. A\n  // discontinuous one does not: a 10-second recording with a 95-second gap in the\n  // middle still ends at 105 seconds. Deriving the span from the records' real\n  // positions is what stops a requested window from being clipped back to the\n  // amount of *data* in the file and silently discarding everything past it.\n  const { earliest, latest } = span(options.recordStarts, options.recordCount, options.recordDuration);\n\n  if (options.duration !== undefined && options.end !== undefined) {\n    throw new TimeRangeError('Use either --duration or --end, not both.');\n  }\n\n  const startSeconds = options.start ?? earliest;\n\n  let endSeconds: number;\n  if (options.duration !== undefined) endSeconds = startSeconds + options.duration;\n  else if (options.end !== undefined) endSeconds = options.end;\n  else endSeconds = latest;\n\n  if (startSeconds >= latest) {\n    /*\n      Quote what was typed. Reporting the parsed seconds meant `--start 4h` came back as\n      \"--start 14400s is at or past the end\", which reads as a value the user never gave.\n\n      In quotation marks, which the parse errors above have always used and this did not.\n      Without them the value ran into the sentence: `--start \"  5s  \"` printed as\n      `--start   5s   is at or past the end`, where the value appears to be `5s   is` and\n      the surrounding spaces — the actual reason a shell-built argument went wrong — are\n      invisible.\n    */\n    throw new TimeRangeError(\n      /*\n        The recording's length in the same words --info uses for it.\n\n        `formatSeconds` renders a bare number of seconds, so this message and the Duration\n        line disagreed about one file in one session: --info said \"6m 40s\" and the error said\n        \"400s\". On an overnight recording it read \"7950s recording\", leaving the reader to\n        divide by 3600 to find out whether their --start was reasonable — which is the one\n        question this message exists to answer. cli-reference.md has always documented it\n        humanised (\"2h 12m 30s\"), a form no input could produce.\n\n        The typed value keeps `quoted`, since that is the user's own text and should come\n        back exactly as they wrote it.\n      */\n      /*\n        `latest` is where the recording ends on its own clock, which is its length only when\n        it starts at zero. A file timed from its first record's timekeeping TAL need not: one\n        whose records run 1000s to 1003s is three seconds long, and this called it \"this\n        16m 43s recording\" — while --info two lines away said \"Duration 3s\". Where the\n        recording sits is the useful thing to say in that case, and it is the number --start\n        has to be given.\n      */\n      earliest === 0\n        ? `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n          `${formatDuration(latest)} recording.`\n        : `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n          `${formatDuration(latest - earliest)} recording, which runs from ` +\n          `${formatSeconds(earliest)} to ${formatSeconds(latest)}.`,\n    );\n  }\n  if (endSeconds <= startSeconds) {\n    // Quote whatever the caller actually gave, for the same reason as the error above. The\n    // end is only echoed when --end was passed: with --duration the end is computed here,\n    // so there is no typed value to quote and the arithmetic result is the honest thing.\n    const endShown =\n      options.end !== undefined && options.endText !== undefined\n        ? quoted(options.endText, endSeconds)\n        : formatSeconds(endSeconds);\n    const startShown = quoted(options.startText, startSeconds);\n    throw new TimeRangeError(\n      `The requested window ends at ${endShown}, which is not after its start at ${startShown}.`,\n    );\n  }\n\n  const clampedEnd = Math.min(endSeconds, latest);\n  const { startRecord, endRecord } = selectRecords(options, startSeconds, clampedEnd);\n\n  return {\n    startSeconds,\n    endSeconds: clampedEnd,\n    startRecord,\n    endRecord,\n    isWholeRecording: startSeconds <= earliest && clampedEnd >= latest,\n    recordingStartSeconds: earliest,\n    recordingEndSeconds: latest,\n  };\n}\n\nfunction span(\n  recordStarts: Float64Array | null | undefined,\n  recordCount: number,\n  recordDuration: number,\n): { earliest: number; latest: number } {\n  if (!recordStarts || recordStarts.length === 0) {\n    return { earliest: 0, latest: recordCount * recordDuration };\n  }\n  let earliest = Infinity;\n  let latest = -Infinity;\n  for (const start of recordStarts) {\n    if (start < earliest) earliest = start;\n    if (start + recordDuration > latest) latest = start + recordDuration;\n  }\n  if (!Number.isFinite(earliest) || !Number.isFinite(latest)) {\n    return { earliest: 0, latest: recordCount * recordDuration };\n  }\n  return { earliest, latest };\n}\n\n/** Every record whose own time span overlaps the requested window. */\nfunction selectRecords(\n  options: { recordDuration: number; recordCount: number; recordStarts?: Float64Array | null | undefined },\n  startSeconds: number,\n  endSeconds: number,\n): { startRecord: number; endRecord: number } {\n  const starts = options.recordStarts;\n  if (!starts || starts.length === 0) {\n    return {\n      startRecord: Math.max(0, Math.floor(startSeconds / options.recordDuration)),\n      endRecord: Math.min(options.recordCount, Math.ceil(endSeconds / options.recordDuration)),\n    };\n  }\n\n  let first = options.recordCount;\n  let last = 0;\n  for (let i = 0; i < starts.length; i++) {\n    const begin = starts[i] ?? 0;\n    if (begin + options.recordDuration > startSeconds && begin < endSeconds) {\n      if (i < first) first = i;\n      if (i + 1 > last) last = i + 1;\n    }\n  }\n  return first < last ? { startRecord: first, endRecord: last } : { startRecord: 0, endRecord: 0 };\n}\n\n/**\n * The value as the caller typed it, in quotation marks, or the parsed seconds if they gave\n * none. The marks show where the value begins and ends, which matters most for the values\n * that went wrong because of what surrounds them.\n */\nfunction quoted(text: string | undefined, seconds: number): string {\n  return text === undefined ? formatSeconds(seconds) : `\"${text}\"`;\n}\n\nfunction formatSeconds(seconds: number): string {\n  return `${Number(seconds.toFixed(3))}s`;\n}\n"]}
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All three are accepted; anything ambiguous is rejected with\n * a message that shows the forms that work.\n */\n\nimport { formatDuration } from '../format/number.js';\n\nexport class TimeRangeError extends Error {\n  constructor(message: string) {\n    super(message);\n    this.name = 'TimeRangeError';\n  }\n}\n\nconst UNIT_SECONDS: Record<string, number> = {\n  h: 3600,\n  hr: 3600,\n  hrs: 3600,\n  hour: 3600,\n  hours: 3600,\n  m: 60,\n  min: 60,\n  mins: 60,\n  minute: 60,\n  minutes: 60,\n  s: 1,\n  sec: 1,\n  secs: 1,\n  second: 1,\n  seconds: 1,\n  ms: 0.001,\n};\n\nconst CLOCK = /^(?:(\\d+):)?(\\d{1,2}):(\\d{1,2}(?:\\.\\d+)?)$/u;\nconst UNIT_TOKEN = /(\\d+(?:\\.\\d+)?)\\s*([a-z]+)/giu;\n\n/**\n * Parse a duration or offset into seconds.\n *\n * Accepted: `90`, `90s`, `5m`, `1h30m`, `1h 30m 15s`, `00:30:00`, `30:00`, `250ms`.\n */\nexport function parseTimeSpec(input: string, optionName: string): number {\n  const text = input.trim().toLowerCase();\n  if (text === '') {\n    throw new TimeRangeError(`${optionName} is empty. Try a value like 30s, 5m, or 00:30:00.`);\n  }\n\n  // Bare number means seconds.\n  if (/^\\d+(?:\\.\\d+)?$/u.test(text)) return assertFinite(Number(text), optionName, input);\n\n  // Clock form: hh:mm:ss or mm:ss.\n  const clock = CLOCK.exec(text);\n  if (clock) {\n    const hours = clock[1] === undefined ? 0 : Number(clock[1]);\n    const minutes = Number(clock[2]);\n    const seconds = Number(clock[3]);\n    if (minutes >= 60 || seconds >= 60) {\n      throw new TimeRangeError(\n        `${optionName} \"${input}\" has a minutes or seconds field of 60 or more.`,\n      );\n    }\n    return assertFinite(hours * 3600 + minutes * 60 + seconds, optionName, input);\n  }\n\n  // Unit form: 1h30m, 5 min, 250ms.\n  UNIT_TOKEN.lastIndex = 0;\n  let total = 0;\n  let matched = 0;\n  let consumed = 0;\n  let match: RegExpExecArray | null;\n  // Which units have already been seen, so a repeat can be rejected rather than added.\n  const seen = new Set<number>();\n  while ((match = UNIT_TOKEN.exec(text)) !== null) {\n    const amount = Number(match[1]);\n    const unit = match[2] ?? 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A fixed nanosecond was applied whatever the rate, and the format does not\n * oblige the interval to be larger than it: EDF's record duration is an 8-character field\n * that accepts `1e-9`. A recording of two 1 ns records holding ten samples each wrote ten of\n * its twenty rows — the window ends at 2e-9, the comparison asked for `time < 2e-9 - 1e-9`,\n * and the entire second record failed it. Exit 0, no warning, half the samples gone.\n */\nexport function toleranceFor(rate: number): number {\n  if (!(rate > 0) || !Number.isFinite(rate)) return BOUNDARY_TOLERANCE;\n  return Math.min(BOUNDARY_TOLERANCE, 1 / rate / 2);\n}\n\n/** Match the exact half-open boundary rules used while writing signal rows. */\nexport function sampleTimeIsInRange(\n  time: number,\n  startSeconds: number,\n  endSeconds: number,\n  tolerance: number = BOUNDARY_TOLERANCE,\n): boolean {\n  return time >= startSeconds - tolerance && time < endSeconds - tolerance;\n}\n\n/** Count samples from one record that fall inside a half-open requested window. */\nexport function countSamplesInRange(options: {\n  recordStart: number;\n  rate: number;\n  samplesPerRecord: number;\n  startSeconds: number;\n  endSeconds: number;\n}): number {\n  const slack = toleranceFor(options.rate);\n  const lower = Math.ceil(\n    (options.startSeconds - slack - options.recordStart) * options.rate,\n  );\n  const upper = Math.ceil(\n    (options.endSeconds - slack - options.recordStart) * options.rate,\n  );\n  const first = Math.max(0, Math.min(options.samplesPerRecord, lower));\n  const last = Math.max(0, Math.min(options.samplesPerRecord, upper));\n  return Math.max(0, last - first);\n}\n\n/**\n * Turn a requested window into both an exact time span and the record range that\n * contains it. Records are the unit the file can be read in; the exact span is what\n * decides which samples inside those records are actually written.\n */\nexport function resolveRange(options: {\n  start?: number | undefined;\n  /** The `--start` value exactly as typed, quoted back in the past-the-end error. */\n  startText?: string | undefined;\n  duration?: number | undefined;\n  end?: number | undefined;\n  /** The `--end` value exactly as typed, quoted back in the window error. */\n  endText?: string | undefined;\n  recordDuration: number;\n  recordCount: number;\n  /**\n   * True start time of each data record, for discontinuous files. When absent,\n   * records are assumed to sit end to end.\n   */\n  recordStarts?: Float64Array | null | undefined;\n}): ResolvedRange {\n  // For a continuous file the recording spans recordCount * recordDuration. A\n  // discontinuous one does not: a 10-second recording with a 95-second gap in the\n  // middle still ends at 105 seconds. Deriving the span from the records' real\n  // positions is what stops a requested window from being clipped back to the\n  // amount of *data* in the file and silently discarding everything past it.\n  const { earliest, latest } = span(options.recordStarts, options.recordCount, options.recordDuration);\n\n  if (options.duration !== undefined && options.end !== undefined) {\n    throw new TimeRangeError('Use either --duration or --end, not both.');\n  }\n\n  const startSeconds = options.start ?? earliest;\n\n  let endSeconds: number;\n  if (options.duration !== undefined) endSeconds = startSeconds + options.duration;\n  else if (options.end !== undefined) endSeconds = options.end;\n  else endSeconds = latest;\n\n  /*\n    At the end, allowing for the arithmetic that produced the end.\n\n    `latest` is `recordCount * recordDuration`, and with a fractional duration that is not the\n    number it prints as: 6003 records of 0.1s is 600.3000000000001, not 600.3. So `--start\n    600.3` on a recording `--info` calls \"10m 0.3s\" was accepted by a hair, converted nothing,\n    and exited 0 with a signals.csv holding its header — which is the empty conversion this\n    error exists to prevent, and which the same command on a whole-second recording is refused\n    for.\n\n    A relative epsilon, the same shape the long layout uses to decide two sample times are one\n    instant: well below any real interval, and well above the rounding that two different\n    routes to the same quantity produce.\n  */\n  const atTheEnd =\n    startSeconds >= latest ||\n    Math.abs(startSeconds - latest) <= Math.max(Math.abs(startSeconds), Math.abs(latest)) * 1e-12;\n  if (atTheEnd) {\n    /*\n      Quote what was typed. Reporting the parsed seconds meant `--start 4h` came back as\n      \"--start 14400s is at or past the end\", which reads as a value the user never gave.\n\n      In quotation marks, which the parse errors above have always used and this did not.\n      Without them the value ran into the sentence: `--start \"  5s  \"` printed as\n      `--start   5s   is at or past the end`, where the value appears to be `5s   is` and\n      the surrounding spaces — the actual reason a shell-built argument went wrong — are\n      invisible.\n    */\n    throw new TimeRangeError(\n      /*\n        The recording's length in the same words --info uses for it.\n\n        `formatSeconds` renders a bare number of seconds, so this message and the Duration\n        line disagreed about one file in one session: --info said \"6m 40s\" and the error said\n        \"400s\". On an overnight recording it read \"7950s recording\", leaving the reader to\n        divide by 3600 to find out whether their --start was reasonable — which is the one\n        question this message exists to answer. cli-reference.md has always documented it\n        humanised (\"2h 12m 30s\"), a form no input could produce.\n\n        The typed value keeps `quoted`, since that is the user's own text and should come\n        back exactly as they wrote it.\n      */\n      /*\n        `latest` is where the recording ends on its own clock, which is its length only when\n        it starts at zero. A file timed from its first record's timekeeping TAL need not: one\n        whose records run 1000s to 1003s is three seconds long, and this called it \"this\n        16m 43s recording\" — while --info two lines away said \"Duration 3s\". Where the\n        recording sits is the useful thing to say in that case, and it is the number --start\n        has to be given.\n      */\n      earliest === 0\n        ? `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n          `${formatDuration(latest)} recording.`\n        : `--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +\n          `${formatDuration(latest - earliest)} recording, which runs from ` +\n          `${formatSeconds(earliest)} to ${formatSeconds(latest)}.`,\n    );\n  }\n  if (endSeconds <= startSeconds) {\n    // Quote whatever the caller actually gave, for the same reason as the error above. The\n    // end is only echoed when --end was passed: with --duration the end is computed here,\n    // so there is no typed value to quote and the arithmetic result is the honest thing.\n    const endShown =\n      options.end !== undefined && options.endText !== undefined\n        ? quoted(options.endText, endSeconds)\n        : formatSeconds(endSeconds);\n    const startShown = quoted(options.startText, startSeconds);\n    throw new TimeRangeError(\n      `The requested window ends at ${endShown}, which is not after its start at ${startShown}.`,\n    );\n  }\n\n  const clampedEnd = Math.min(endSeconds, latest);\n  const { startRecord, endRecord } = selectRecords(options, startSeconds, clampedEnd);\n\n  return {\n    startSeconds,\n    endSeconds: clampedEnd,\n    startRecord,\n    endRecord,\n    isWholeRecording: startSeconds <= earliest && clampedEnd >= latest,\n    recordingStartSeconds: earliest,\n    recordingEndSeconds: latest,\n  };\n}\n\nfunction span(\n  recordStarts: Float64Array | null | undefined,\n  recordCount: number,\n  recordDuration: number,\n): { earliest: number; latest: number } {\n  if (!recordStarts || recordStarts.length === 0) {\n    return { earliest: 0, latest: recordCount * recordDuration };\n  }\n  let earliest = Infinity;\n  let latest = -Infinity;\n  for (const start of recordStarts) {\n    if (start < earliest) earliest = start;\n    if (start + recordDuration > latest) latest = start + recordDuration;\n  }\n  if (!Number.isFinite(earliest) || !Number.isFinite(latest)) {\n    return { earliest: 0, latest: recordCount * recordDuration };\n  }\n  return { earliest, latest };\n}\n\n/** Every record whose own time span overlaps the requested window. */\nfunction selectRecords(\n  options: { recordDuration: number; recordCount: number; recordStarts?: Float64Array | null | undefined },\n  startSeconds: number,\n  endSeconds: number,\n): { startRecord: number; endRecord: number } {\n  const starts = options.recordStarts;\n  if (!starts || starts.length === 0) {\n    return {\n      startRecord: Math.max(0, Math.floor(startSeconds / options.recordDuration)),\n      endRecord: Math.min(options.recordCount, Math.ceil(endSeconds / options.recordDuration)),\n    };\n  }\n\n  let first = options.recordCount;\n  let last = 0;\n  for (let i = 0; i < starts.length; i++) {\n    const begin = starts[i] ?? 0;\n    if (begin + options.recordDuration > startSeconds && begin < endSeconds) {\n      if (i < first) first = i;\n      if (i + 1 > last) last = i + 1;\n    }\n  }\n  return first < last ? { startRecord: first, endRecord: last } : { startRecord: 0, endRecord: 0 };\n}\n\n/**\n * The value as the caller typed it, in quotation marks, or the parsed seconds if they gave\n * none. The marks show where the value begins and ends, which matters most for the values\n * that went wrong because of what surrounds them.\n */\nfunction quoted(text: string | undefined, seconds: number): string {\n  return text === undefined ? formatSeconds(seconds) : `\"${text}\"`;\n}\n\nfunction formatSeconds(seconds: number): string {\n  return `${Number(seconds.toFixed(3))}s`;\n}\n"]}

package/dist/convert/timing.d.ts

@@ -5,10 +5,6 @@ export interface AnnotationTimingData {
     malformed: number;
     /** Unreadable TALs in first position, which carry timing rather than an event. */
     malformedTimekeeping?: number;
-    /** Events kept whose stated duration could not be read. */
-    unreadableDurations?: number;
-    /** Events kept whose stated duration read as a number below zero. */
-    negativeDurations?: number;
 }
 /**
  * Resolve the true start time of every data record.

package/dist/convert/timing.js

@@ -16,52 +16,6 @@ export function deriveRecordStarts(file, annotationData) {
             hint: 'The rest were exported normally. The file may have been written by a non-conforming tool.',
         });
     }
-    /*
-      An event that was exported, minus a field.
-  
-      `duration_s` is empty in annotations.csv when the file stated no duration, which is what
-      the documentation says an empty cell means. A duration the file did state and this could
-      not read produced exactly the same empty cell, so an event written with a duration of
-      `abc` was exported as an event that never had one — the same row as its neighbour, and
-      nothing said a field had been dropped.
-  
-      Not counted among the entries that "could not be exported": this one was, and everything
-      else about it is intact. The count is of rows in annotations.csv, since a TAL may carry
-      several texts and each becomes a row with the same empty cell.
-    */
-    /*
-      A length of time below zero.
-  
-      Exported as the file wrote it, because a zero this tool invented would be a number no
-      writer wrote. But every use of it goes quietly wrong: the recipe the documentation gives
-      for the samples an event covers is `onset_s + duration_s`, and a duration of -3 ends the
-      window three seconds before the event begins and selects nothing, with nothing raised
-      anywhere to say why.
-    */
-    const negativeDurations = annotationData.negativeDurations ?? 0;
-    if (negativeDurations > 0) {
-        const one = negativeDurations === 1;
-        diagnostics.push({
-            code: 'ANNOTATION_DECODE_FAILED',
-            severity: 'warning',
-            message: `${negativeDurations} annotation${one ? '' : 's'} state${one ? 's' : ''} a duration ` +
-                `below zero, which is not a length of time.`,
-            hint: 'The value is written to annotations.csv as the file gave it. Adding it to onset_s ' +
-                'ends the event before it starts, so check these rows before using the durations.',
-        });
-    }
-    const unreadableDurations = annotationData.unreadableDurations ?? 0;
-    if (unreadableDurations > 0) {
-        const one = unreadableDurations === 1;
-        diagnostics.push({
-            code: 'ANNOTATION_DECODE_FAILED',
-            severity: 'warning',
-            message: `${unreadableDurations} annotation${one ? '' : 's'} state${one ? 's' : ''} a duration ` +
-                `that is not a number, so ${one ? 'its' : 'their'} duration_s cell is empty.`,
-            hint: 'The onset and the description were read normally. An empty duration_s otherwise ' +
-                'means the file stated no duration, so these rows cannot be told apart from those.',
-        });
-    }
     /*
       A timekeeping TAL is not an event, and saying it "could not be exported" describes the
       wrong loss twice over.

package/dist/convert/timing.js.map

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type { Diagnostic } from '../edf/errors.js';\nimport type { EdfFile } from '../edf/reader.js';\n\nexport interface AnnotationTimingData {\n  recordStarts: (number | null)[];\n  malformed: number;\n  /** Unreadable TALs in first position, which carry timing rather than an event. */\n  malformedTimekeeping?: number;\n  /** Events kept whose stated duration could not be read. */\n  unreadableDurations?: number;\n  /** Events kept whose stated duration read as a number below zero. */\n  negativeDurations?: number;\n}\n\n/**\n * Resolve the true start time of every data record.\n *\n * Continuous recordings need no table because their record positions are\n * arithmetic. EDF+D recordings carry their positions in the annotation channel;\n * missing or malformed timekeeping entries are reported before falling back.\n */\nexport function deriveRecordStarts(\n  file: EdfFile,\n  annotationData: AnnotationTimingData,\n): { starts: Float64Array | null; diagnostics: Diagnostic[] } {\n  const diagnostics: Diagnostic[] = [];\n\n  if (annotationData.malformed > 0) {\n    diagnostics.push({\n      code: 'ANNOTATION_DECODE_FAILED',\n      severity: 'warning',\n      message:\n        `${annotationData.malformed} annotation entr${annotationData.malformed === 1 ? 'y was' : 'ies were'} ` +\n        `unreadable and could not be exported.`,\n      hint: 'The rest were exported normally. The file may have been written by a non-conforming tool.',\n    });\n  }\n\n  /*\n    An event that was exported, minus a field.\n\n    `duration_s` is empty in annotations.csv when the file stated no duration, which is what\n    the documentation says an empty cell means. A duration the file did state and this could\n    not read produced exactly the same empty cell, so an event written with a duration of\n    `abc` was exported as an event that never had one — the same row as its neighbour, and\n    nothing said a field had been dropped.\n\n    Not counted among the entries that \"could not be exported\": this one was, and everything\n    else about it is intact. The count is of rows in annotations.csv, since a TAL may carry\n    several texts and each becomes a row with the same empty cell.\n  */\n  /*\n    A length of time below zero.\n\n    Exported as the file wrote it, because a zero this tool invented would be a number no\n    writer wrote. But every use of it goes quietly wrong: the recipe the documentation gives\n    for the samples an event covers is `onset_s + duration_s`, and a duration of -3 ends the\n    window three seconds before the event begins and selects nothing, with nothing raised\n    anywhere to say why.\n  */\n  const negativeDurations = annotationData.negativeDurations ?? 0;\n  if (negativeDurations > 0) {\n    const one = negativeDurations === 1;\n    diagnostics.push({\n      code: 'ANNOTATION_DECODE_FAILED',\n      severity: 'warning',\n      message:\n        `${negativeDurations} annotation${one ? '' : 's'} state${one ? 's' : ''} a duration ` +\n        `below zero, which is not a length of time.`,\n      hint:\n        'The value is written to annotations.csv as the file gave it. Adding it to onset_s ' +\n        'ends the event before it starts, so check these rows before using the durations.',\n    });\n  }\n\n  const unreadableDurations = annotationData.unreadableDurations ?? 0;\n  if (unreadableDurations > 0) {\n    const one = unreadableDurations === 1;\n    diagnostics.push({\n      code: 'ANNOTATION_DECODE_FAILED',\n      severity: 'warning',\n      message:\n        `${unreadableDurations} annotation${one ? '' : 's'} state${one ? 's' : ''} a duration ` +\n        `that is not a number, so ${one ? 'its' : 'their'} duration_s cell is empty.`,\n      hint:\n        'The onset and the description were read normally. An empty duration_s otherwise ' +\n        'means the file stated no duration, so these rows cannot be told apart from those.',\n    });\n  }\n\n  /*\n    A timekeeping TAL is not an event, and saying it \"could not be exported\" describes the\n    wrong loss twice over.\n\n    These were counted among the annotations, so a file with one unreadable timekeeping TAL\n    and three good events announced \"1 annotation entry was unreadable and could not be\n    exported\" — while exporting all three. Nothing was missing from annotations.csv; what\n    went missing was a record's position in time, which the message never mentioned.\n  */\n  const lostTimekeeping = annotationData.malformedTimekeeping ?? 0;\n  // The EDF+D branch below raises its own, which names the records and is more specific.\n  // Saying both would report one problem twice.\n  if (lostTimekeeping > 0 && file.header.continuity !== 'EDF+D') {\n    const one = lostTimekeeping === 1;\n    diagnostics.push({\n      code: 'ANNOTATION_DECODE_FAILED',\n      severity: 'warning',\n      message:\n        `${lostTimekeeping} data record${one ? '' : 's'} carr${one ? 'ies' : 'y'} a timekeeping ` +\n        `annotation that could not be read, so ${one ? 'it does' : 'they do'} not say where in ` +\n        `time ${one ? 'it sits' : 'they sit'}.`,\n      hint:\n        'No event was lost — a timekeeping annotation states a record\\'s start time and is ' +\n        'never exported. Times are derived from the records that could be read.',\n    });\n  }\n\n  /*\n    A continuous recording's records are contiguous, but the first one need not sit at zero.\n\n    EDF+ puts the header's start time and every annotation onset on one origin, and says the\n    first data record's timekeeping TAL \"always starts with +0.X\", stating the fraction of a\n    second by which that record follows it. Ignoring that fraction timed the samples from 0\n    while the events kept their true onsets, so the two ended up on origins half a second\n    apart — an event at +0.75 in a 4 Hz recording whose first TAL reads +0.5 landed on sample\n    3 instead of sample 1. The same file marked EDF+D, byte-identical but for the reserved\n    field, placed it correctly, which is what gives the omission away.\n\n    Records stay contiguous, which is what continuous means: only the origin moves. A first\n    TAL of +0 needs no table at all, and that is nearly every file.\n  */\n  if (file.header.continuity !== 'EDF+D') {\n    if (file.header.continuity !== 'EDF+C') return { starts: null, diagnostics };\n\n    /*\n      The origin comes from whichever record first states one, not from record 0 alone.\n\n      Reading only `recordStarts[0]` meant a single unreadable timekeeping TAL threw the\n      origin away and timed the whole file from zero — while records 1 and 2, saying plainly\n      that they start at 1.5s and 2.5s, went unread. A recording whose records sit at 0.5s,\n      1.5s and 2.5s came out with every sample 0.5s earlier than the file states, against\n      annotation onsets that kept their true values. That is precisely the mismatch 0.4.9\n      fixed, arriving through the one hole left in it, and the byte-identical EDF+D twin\n      timed it correctly, which is what gives it away.\n\n      Continuity is what makes this recoverable: record i sits at `origin + i * duration`,\n      so any readable record determines the origin for all of them.\n    */\n    const origin = originOf(annotationData.recordStarts, file.header.recordDuration);\n    if (origin === null) return { starts: null, diagnostics };\n\n    const contiguous = new Float64Array(file.recordCount);\n    for (let i = 0; i < file.recordCount; i++) {\n      contiguous[i] = origin + i * file.header.recordDuration;\n    }\n\n    /*\n      A file marked continuous whose own records disagree about it.\n\n      Nothing looked at records past the first, so an EDF+C file whose records are in fact\n      spread out was timed as though they were contiguous and said nothing. The records are\n      being read here anyway, so the contradiction costs nothing to notice — and it is the\n      file, not the reader, that has to be wrong for this to fire.\n\n      Compared against what the file can express, not for equality. 0.4.41 asked whether the\n      two doubles were the same, which they are not: a recording of 0.1s records sitting at\n      0.1, 0.2, 0.3 ... is contiguous by construction, and 0.1 + 2 * 0.1 is\n      0.30000000000000004. Two of its eight records were reported as contradicting\n      continuity, on an ordinary file — and under --strict that was a failed run. The\n      smallest interval the recording distinguishes is one sample of its fastest channel;\n      anything below half of that is arithmetic, not a gap. `canCarry` has already refused\n      origins where the double spacing swamps that interval, so the representation error is\n      under the tolerance by construction rather than by hope.\n    */\n    const tolerance = finestInterval(file) / 2;\n    const contradicting = annotationData.recordStarts.filter(\n      (declared, i) =>\n        typeof declared === 'number' && Math.abs(declared - (contiguous[i] as number)) > tolerance,\n    ).length;\n    if (contradicting > 0) {\n      diagnostics.push({\n        code: 'DISCONTINUOUS',\n        severity: 'warning',\n        message:\n          `This file is marked continuous (EDF+C), but ${contradicting} of its ` +\n          `${file.recordCount} data records say they start somewhere other than where ` +\n          `continuity puts them.`,\n        hint:\n          'Times are written as if the records were contiguous, which is what EDF+C means. ' +\n          'If the recording really has gaps, the file should have been marked EDF+D.',\n      });\n    }\n    const first = origin;\n    const last = contiguous[file.recordCount - 1] ?? first;\n    if (!canCarry(last, file)) {\n      diagnostics.push(unusableOrigin(first, file));\n      return { starts: null, diagnostics };\n    }\n    /*\n      An origin of zero is the same as no origin, for timing. It is not the same for the\n      check above.\n\n      This returned early on `origin === 0`, which is right about the times — contiguous\n      starts from zero are what timing from zero already produces — and skipped the\n      contradiction check on the way past. So an EDF+C file whose records say 0, 5 and 10 on\n      one-second records went unreported, while the same file shifted one second, saying 1, 6\n      and 11, was reported. The contradiction is in records 1 and 2 either way; where record 0\n      happens to sit decides nothing about it.\n    */\n    if (origin === 0) return { starts: null, diagnostics };\n    return { starts: contiguous, diagnostics };\n  }\n\n  if (file.annotationSignals.length === 0) {\n    diagnostics.push({\n      code: 'DISCONTINUOUS',\n      severity: 'warning',\n      message:\n        'This file is marked discontinuous but has no annotation channel, so where its ' +\n        'records sit in time is not recorded anywhere.',\n      hint: 'Times are written as if the records were contiguous. Any gaps are lost.',\n    });\n    return { starts: null, diagnostics };\n  }\n\n  /*\n    A record with no readable time is placed from the origin the other records establish,\n    not from zero.\n\n    `i * recordDuration` assumed the recording began at zero, which is the one thing the\n    other records are in a position to contradict: a file starting at 0.5s put its\n    unreadable record at 0.000 while its neighbours sat at 1.5s and 2.5s. The guess is still\n    a guess — a discontinuous file may have a gap exactly there — and it is still reported\n    below, but starting it from where the recording actually begins is strictly closer, and\n    it makes an EDF+D file agree with its byte-identical EDF+C twin about record 0.\n  */\n  const base = originOf(annotationData.recordStarts, file.header.recordDuration) ?? 0;\n  const starts = new Float64Array(file.recordCount);\n  const missing: number[] = [];\n  for (let i = 0; i < file.recordCount; i++) {\n    const declared = annotationData.recordStarts[i];\n    if (declared === null || declared === undefined) {\n      missing.push(i);\n      starts[i] = base + i * file.header.recordDuration;\n    } else {\n      starts[i] = declared;\n    }\n  }\n\n  if (missing.length > 0) {\n    const shown = missing.slice(0, 5).join(', ');\n    diagnostics.push({\n      code: 'ANNOTATION_DECODE_FAILED',\n      severity: 'warning',\n      message:\n        `${missing.length} of ${file.recordCount} data records carry no readable timekeeping ` +\n        `annotation (record${missing.length === 1 ? '' : 's'} ${shown}` +\n        `${missing.length > 5 ? ', …' : ''}), so their true position in time is unknown.`,\n      hint: 'Those records are timed as if they were contiguous; treat their timestamps as unreliable.',\n    });\n  }\n\n  /*\n    Furthest from zero, in either direction.\n\n    This took the signed maximum and seeded it with 0, so a recording whose records all sit\n    at negative onsets never got past the seed: `furthest` stayed 0, which any interval can\n    carry. Then the samples collapsed anyway, because the arithmetic that defeats a large\n    positive origin defeats a large negative one identically — at -1e16 seconds, adding a\n    1-second sample interval leaves the double unchanged.\n\n    A four-record recording of eight samples wrote two rows, exit 0, no warning. Its\n    byte-for-byte positive mirror wrote all eight and explained why it had to time them from\n    zero. Same file, same failure, opposite sign, opposite outcome — and the silent one is\n    the one that loses data, which is exactly what unusableOrigin exists to prevent.\n  */\n  let furthest = 0;\n  for (const start of starts) if (Math.abs(start) > Math.abs(furthest)) furthest = start;\n  if (!canCarry(furthest, file)) {\n    diagnostics.push(unusableOrigin(furthest, file));\n    return { starts: null, diagnostics };\n  }\n\n  /*\n    Two ways a record can put the time column out of order, and only one was being looked for.\n\n    A record starting before the one before it is the obvious case. The other is a record\n    starting before the one before it *ends*: starts of 0, 0.5 and 1.0 on one-second records\n    are strictly increasing, so nothing fired, and the rows still came out 0.25, 0.5, 0.75,\n    0.5 — because record 0's samples run to 0.75 while record 1 begins at 0.5. Overlapping\n    acquisition is what a device does when it re-sends a buffer, and the reader has no more\n    to say about it than about the reversed case: every sample is written, in file order,\n    with the time the file gives it.\n\n    Contiguity is not overlap. A continuous recording has `starts[i] === starts[i-1] +\n    duration` exactly, so the comparison is made strict by a fraction of the finest interval\n    the recording can express — the same measure the origin check uses.\n  */\n  const slack = finestInterval(file) / 2;\n  let outOfOrder = 0;\n  let overlapping = 0;\n  for (let i = 1; i < starts.length; i++) {\n    const previous = starts[i - 1] as number;\n    const current = starts[i] as number;\n    if (current < previous) outOfOrder++;\n    else if (current + slack < previous + file.header.recordDuration) overlapping++;\n  }\n  if (outOfOrder > 0) {\n    diagnostics.push({\n      code: 'DISCONTINUOUS',\n      severity: 'warning',\n      message: `${outOfOrder} data record${outOfOrder === 1 ? '' : 's'} start earlier than the record before it.`,\n      hint: 'Rows are written in file order, so the time column will not increase monotonically.',\n    });\n  }\n  if (overlapping > 0) {\n    diagnostics.push({\n      code: 'DISCONTINUOUS',\n      severity: 'warning',\n      message:\n        `${overlapping} data record${overlapping === 1 ? '' : 's'} start before the record ` +\n        `before ${overlapping === 1 ? 'it' : 'them'} ends, so their samples overlap in time.`,\n      hint: 'Rows are written in file order, so the time column will not increase monotonically.',\n    });\n  }\n\n  return { starts, diagnostics };\n}\n\n/**\n * The recording's origin, from the first record that states where it is.\n *\n * Records of a continuous recording sit end to end, so record `i` beginning at `t` puts the\n * origin at `t - i * duration`. Any one readable timekeeping TAL is therefore enough, which\n * is what stops one unreadable entry from costing the whole file its position in time.\n */\nfunction originOf(recordStarts: readonly (number | null)[], recordDuration: number): number | null {\n  for (const [index, declared] of recordStarts.entries()) {\n    if (typeof declared !== 'number') continue;\n    const origin = declared - index * recordDuration;\n    return Number.isFinite(origin) ? origin : null;\n  }\n  return null;\n}\n\n/**\n * Whether times this far out can still tell one sample from the next.\n *\n * A double spaces its values further apart the larger they get: at 1e16 the gap is 2\n * seconds, so `t + 1` is `t`. Past that point a recording's declared origin stops being a\n * position and becomes a wall — the arithmetic that places records and samples returns the\n * origin itself, whatever is added to it.\n *\n * The finest thing that has to survive is the gap between two consecutive samples of the\n * fastest channel, since that is what the time column is made of. If that survives, so does\n * a whole record.\n */\nfunction canCarry(origin: number, file: EdfFile): boolean {\n  if (!Number.isFinite(origin)) return false;\n  // Asked of the origin furthest from zero, whichever side it is on: the spacing of doubles\n  // grows with magnitude, not with value, so -1e16 and +1e16 fail this identically.\n  return origin + finestInterval(file) > origin;\n}\n\n/**\n * The shortest span this recording can tell apart: one sample of its fastest channel.\n *\n * The time column is made of these, so nothing below one is a distinction the file is in a\n * position to make — which is what makes it the right size for both the \"can this origin\n * still separate two samples\" question and the \"is this record really somewhere else\"\n * question.\n */\nfunction finestInterval(file: EdfFile): number {\n  let interval = file.header.recordDuration;\n  for (const signal of file.header.signals) {\n    if (signal.isAnnotations || !(signal.samplesPerRecord > 0)) continue;\n    const step = file.header.recordDuration / signal.samplesPerRecord;\n    if (step > 0 && step < interval) interval = step;\n  }\n  return interval;\n}\n\n/**\n * An origin the file's own arithmetic cannot express, reported rather than acted on.\n *\n * Two things went wrong when this was taken at face value, both of them quiet. A file whose\n * records all collapsed onto one instant made the recording zero seconds long, and the\n * window resolver — which had no reason to suspect the recording rather than the request —\n * blamed a flag nobody had passed:\n *\n *     error: --start 100000000000000000s is at or past the end of this\n *            100000000000000000s recording.\n *\n * Slightly below that, the collapse is partial: `records[i].start + recordDuration` equals\n * the start again, so the test for \"does this record overlap the window\" fails for every\n * record whose neighbour rounded onto it. A twelve-row recording wrote four rows, exit 0,\n * no warning — the eight that vanished looked exactly like a file that never had them.\n *\n * Timing from zero is what the file did before 0.4.9 taught it to honour the first\n * timekeeping TAL, and at this magnitude it is the only column that can hold distinct\n * values. The origin is lost, so this says so.\n */\nfunction unusableOrigin(origin: number, file: EdfFile): Diagnostic {\n  return {\n    code: 'DISCONTINUOUS',\n    severity: 'warning',\n    message:\n      `This recording's timekeeping annotations place it ${origin}s from its own start ` +\n      `date, which is too far out for its ${file.header.recordDuration}s records to be told ` +\n      `apart: at that magnitude adding a sample interval leaves the number unchanged.`,\n    hint:\n      'Sample times are written from zero instead, so every row is present and the column ' +\n      'increases. Add the onsets in annotations.csv to recover absolute times if you need them.',\n  };\n}\n"]}
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type { Diagnostic } from '../edf/errors.js';\nimport type { EdfFile } from '../edf/reader.js';\n\nexport interface AnnotationTimingData {\n  recordStarts: (number | null)[];\n  malformed: number;\n  /** Unreadable TALs in first position, which carry timing rather than an event. */\n  malformedTimekeeping?: number;\n}\n\n/**\n * Resolve the true start time of every data record.\n *\n * Continuous recordings need no table because their record positions are\n * arithmetic. EDF+D recordings carry their positions in the annotation channel;\n * missing or malformed timekeeping entries are reported before falling back.\n */\nexport function deriveRecordStarts(\n  file: EdfFile,\n  annotationData: AnnotationTimingData,\n): { starts: Float64Array | null; diagnostics: Diagnostic[] } {\n  const diagnostics: Diagnostic[] = [];\n\n  if (annotationData.malformed > 0) {\n    diagnostics.push({\n      code: 'ANNOTATION_DECODE_FAILED',\n      severity: 'warning',\n      message:\n        `${annotationData.malformed} annotation entr${annotationData.malformed === 1 ? 'y was' : 'ies were'} ` +\n        `unreadable and could not be exported.`,\n      hint: 'The rest were exported normally. The file may have been written by a non-conforming tool.',\n    });\n  }\n\n\n  /*\n    A timekeeping TAL is not an event, and saying it \"could not be exported\" describes the\n    wrong loss twice over.\n\n    These were counted among the annotations, so a file with one unreadable timekeeping TAL\n    and three good events announced \"1 annotation entry was unreadable and could not be\n    exported\" — while exporting all three. Nothing was missing from annotations.csv; what\n    went missing was a record's position in time, which the message never mentioned.\n  */\n  const lostTimekeeping = annotationData.malformedTimekeeping ?? 0;\n  // The EDF+D branch below raises its own, which names the records and is more specific.\n  // Saying both would report one problem twice.\n  if (lostTimekeeping > 0 && file.header.continuity !== 'EDF+D') {\n    const one = lostTimekeeping === 1;\n    diagnostics.push({\n      code: 'ANNOTATION_DECODE_FAILED',\n      severity: 'warning',\n      message:\n        `${lostTimekeeping} data record${one ? '' : 's'} carr${one ? 'ies' : 'y'} a timekeeping ` +\n        `annotation that could not be read, so ${one ? 'it does' : 'they do'} not say where in ` +\n        `time ${one ? 'it sits' : 'they sit'}.`,\n      hint:\n        'No event was lost — a timekeeping annotation states a record\\'s start time and is ' +\n        'never exported. Times are derived from the records that could be read.',\n    });\n  }\n\n  /*\n    A continuous recording's records are contiguous, but the first one need not sit at zero.\n\n    EDF+ puts the header's start time and every annotation onset on one origin, and says the\n    first data record's timekeeping TAL \"always starts with +0.X\", stating the fraction of a\n    second by which that record follows it. Ignoring that fraction timed the samples from 0\n    while the events kept their true onsets, so the two ended up on origins half a second\n    apart — an event at +0.75 in a 4 Hz recording whose first TAL reads +0.5 landed on sample\n    3 instead of sample 1. The same file marked EDF+D, byte-identical but for the reserved\n    field, placed it correctly, which is what gives the omission away.\n\n    Records stay contiguous, which is what continuous means: only the origin moves. A first\n    TAL of +0 needs no table at all, and that is nearly every file.\n  */\n  if (file.header.continuity !== 'EDF+D') {\n    if (file.header.continuity !== 'EDF+C') return { starts: null, diagnostics };\n\n    /*\n      The origin comes from whichever record first states one, not from record 0 alone.\n\n      Reading only `recordStarts[0]` meant a single unreadable timekeeping TAL threw the\n      origin away and timed the whole file from zero — while records 1 and 2, saying plainly\n      that they start at 1.5s and 2.5s, went unread. A recording whose records sit at 0.5s,\n      1.5s and 2.5s came out with every sample 0.5s earlier than the file states, against\n      annotation onsets that kept their true values. That is precisely the mismatch 0.4.9\n      fixed, arriving through the one hole left in it, and the byte-identical EDF+D twin\n      timed it correctly, which is what gives it away.\n\n      Continuity is what makes this recoverable: record i sits at `origin + i * duration`,\n      so any readable record determines the origin for all of them.\n    */\n    const origin = originOf(annotationData.recordStarts, file.header.recordDuration);\n    if (origin === null) return { starts: null, diagnostics };\n\n    const contiguous = new Float64Array(file.recordCount);\n    for (let i = 0; i < file.recordCount; i++) {\n      contiguous[i] = origin + i * file.header.recordDuration;\n    }\n\n    /*\n      A file marked continuous whose own records disagree about it.\n\n      Nothing looked at records past the first, so an EDF+C file whose records are in fact\n      spread out was timed as though they were contiguous and said nothing. The records are\n      being read here anyway, so the contradiction costs nothing to notice — and it is the\n      file, not the reader, that has to be wrong for this to fire.\n\n      Compared against what the file can express, not for equality. 0.4.41 asked whether the\n      two doubles were the same, which they are not: a recording of 0.1s records sitting at\n      0.1, 0.2, 0.3 ... is contiguous by construction, and 0.1 + 2 * 0.1 is\n      0.30000000000000004. Two of its eight records were reported as contradicting\n      continuity, on an ordinary file — and under --strict that was a failed run. The\n      smallest interval the recording distinguishes is one sample of its fastest channel;\n      anything below half of that is arithmetic, not a gap. `canCarry` has already refused\n      origins where the double spacing swamps that interval, so the representation error is\n      under the tolerance by construction rather than by hope.\n    */\n    const tolerance = finestInterval(file) / 2;\n    const contradicting = annotationData.recordStarts.filter(\n      (declared, i) =>\n        typeof declared === 'number' && Math.abs(declared - (contiguous[i] as number)) > tolerance,\n    ).length;\n    if (contradicting > 0) {\n      diagnostics.push({\n        code: 'DISCONTINUOUS',\n        severity: 'warning',\n        message:\n          `This file is marked continuous (EDF+C), but ${contradicting} of its ` +\n          `${file.recordCount} data records say they start somewhere other than where ` +\n          `continuity puts them.`,\n        hint:\n          'Times are written as if the records were contiguous, which is what EDF+C means. ' +\n          'If the recording really has gaps, the file should have been marked EDF+D.',\n      });\n    }\n    const first = origin;\n    const last = contiguous[file.recordCount - 1] ?? first;\n    if (!canCarry(last, file)) {\n      diagnostics.push(unusableOrigin(first, file));\n      return { starts: null, diagnostics };\n    }\n    /*\n      An origin of zero is the same as no origin, for timing. It is not the same for the\n      check above.\n\n      This returned early on `origin === 0`, which is right about the times — contiguous\n      starts from zero are what timing from zero already produces — and skipped the\n      contradiction check on the way past. So an EDF+C file whose records say 0, 5 and 10 on\n      one-second records went unreported, while the same file shifted one second, saying 1, 6\n      and 11, was reported. The contradiction is in records 1 and 2 either way; where record 0\n      happens to sit decides nothing about it.\n    */\n    if (origin === 0) return { starts: null, diagnostics };\n    return { starts: contiguous, diagnostics };\n  }\n\n  if (file.annotationSignals.length === 0) {\n    diagnostics.push({\n      code: 'DISCONTINUOUS',\n      severity: 'warning',\n      message:\n        'This file is marked discontinuous but has no annotation channel, so where its ' +\n        'records sit in time is not recorded anywhere.',\n      hint: 'Times are written as if the records were contiguous. Any gaps are lost.',\n    });\n    return { starts: null, diagnostics };\n  }\n\n  /*\n    A record with no readable time is placed from the origin the other records establish,\n    not from zero.\n\n    `i * recordDuration` assumed the recording began at zero, which is the one thing the\n    other records are in a position to contradict: a file starting at 0.5s put its\n    unreadable record at 0.000 while its neighbours sat at 1.5s and 2.5s. The guess is still\n    a guess — a discontinuous file may have a gap exactly there — and it is still reported\n    below, but starting it from where the recording actually begins is strictly closer, and\n    it makes an EDF+D file agree with its byte-identical EDF+C twin about record 0.\n  */\n  const base = originOf(annotationData.recordStarts, file.header.recordDuration) ?? 0;\n  const starts = new Float64Array(file.recordCount);\n  const missing: number[] = [];\n  for (let i = 0; i < file.recordCount; i++) {\n    const declared = annotationData.recordStarts[i];\n    if (declared === null || declared === undefined) {\n      missing.push(i);\n      starts[i] = base + i * file.header.recordDuration;\n    } else {\n      starts[i] = declared;\n    }\n  }\n\n  if (missing.length > 0) {\n    const shown = missing.slice(0, 5).join(', ');\n    diagnostics.push({\n      code: 'ANNOTATION_DECODE_FAILED',\n      severity: 'warning',\n      message:\n        `${missing.length} of ${file.recordCount} data records carry no readable timekeeping ` +\n        `annotation (record${missing.length === 1 ? '' : 's'} ${shown}` +\n        `${missing.length > 5 ? ', …' : ''}), so their true position in time is unknown.`,\n      hint: 'Those records are timed as if they were contiguous; treat their timestamps as unreliable.',\n    });\n  }\n\n  /*\n    Furthest from zero, in either direction.\n\n    This took the signed maximum and seeded it with 0, so a recording whose records all sit\n    at negative onsets never got past the seed: `furthest` stayed 0, which any interval can\n    carry. Then the samples collapsed anyway, because the arithmetic that defeats a large\n    positive origin defeats a large negative one identically — at -1e16 seconds, adding a\n    1-second sample interval leaves the double unchanged.\n\n    A four-record recording of eight samples wrote two rows, exit 0, no warning. Its\n    byte-for-byte positive mirror wrote all eight and explained why it had to time them from\n    zero. Same file, same failure, opposite sign, opposite outcome — and the silent one is\n    the one that loses data, which is exactly what unusableOrigin exists to prevent.\n  */\n  let furthest = 0;\n  for (const start of starts) if (Math.abs(start) > Math.abs(furthest)) furthest = start;\n  if (!canCarry(furthest, file)) {\n    diagnostics.push(unusableOrigin(furthest, file));\n    return { starts: null, diagnostics };\n  }\n\n  /*\n    Two ways a record can put the time column out of order, and only one was being looked for.\n\n    A record starting before the one before it is the obvious case. The other is a record\n    starting before the one before it *ends*: starts of 0, 0.5 and 1.0 on one-second records\n    are strictly increasing, so nothing fired, and the rows still came out 0.25, 0.5, 0.75,\n    0.5 — because record 0's samples run to 0.75 while record 1 begins at 0.5. Overlapping\n    acquisition is what a device does when it re-sends a buffer, and the reader has no more\n    to say about it than about the reversed case: every sample is written, in file order,\n    with the time the file gives it.\n\n    Contiguity is not overlap. A continuous recording has `starts[i] === starts[i-1] +\n    duration` exactly, so the comparison is made strict by a fraction of the finest interval\n    the recording can express — the same measure the origin check uses.\n  */\n  const slack = finestInterval(file) / 2;\n  let outOfOrder = 0;\n  let overlapping = 0;\n  for (let i = 1; i < starts.length; i++) {\n    const previous = starts[i - 1] as number;\n    const current = starts[i] as number;\n    if (current < previous) outOfOrder++;\n    else if (current + slack < previous + file.header.recordDuration) overlapping++;\n  }\n  if (outOfOrder > 0) {\n    diagnostics.push({\n      code: 'DISCONTINUOUS',\n      severity: 'warning',\n      message: `${outOfOrder} data record${outOfOrder === 1 ? '' : 's'} start earlier than the record before it.`,\n      hint: 'Rows are written in file order, so the time column will not increase monotonically.',\n    });\n  }\n  if (overlapping > 0) {\n    diagnostics.push({\n      code: 'DISCONTINUOUS',\n      severity: 'warning',\n      message:\n        `${overlapping} data record${overlapping === 1 ? '' : 's'} start before the record ` +\n        `before ${overlapping === 1 ? 'it' : 'them'} ends, so their samples overlap in time.`,\n      hint: 'Rows are written in file order, so the time column will not increase monotonically.',\n    });\n  }\n\n  return { starts, diagnostics };\n}\n\n/**\n * The recording's origin, from the first record that states where it is.\n *\n * Records of a continuous recording sit end to end, so record `i` beginning at `t` puts the\n * origin at `t - i * duration`. Any one readable timekeeping TAL is therefore enough, which\n * is what stops one unreadable entry from costing the whole file its position in time.\n */\nfunction originOf(recordStarts: readonly (number | null)[], recordDuration: number): number | null {\n  for (const [index, declared] of recordStarts.entries()) {\n    if (typeof declared !== 'number') continue;\n    const origin = declared - index * recordDuration;\n    return Number.isFinite(origin) ? origin : null;\n  }\n  return null;\n}\n\n/**\n * Whether times this far out can still tell one sample from the next.\n *\n * A double spaces its values further apart the larger they get: at 1e16 the gap is 2\n * seconds, so `t + 1` is `t`. Past that point a recording's declared origin stops being a\n * position and becomes a wall — the arithmetic that places records and samples returns the\n * origin itself, whatever is added to it.\n *\n * The finest thing that has to survive is the gap between two consecutive samples of the\n * fastest channel, since that is what the time column is made of. If that survives, so does\n * a whole record.\n */\nfunction canCarry(origin: number, file: EdfFile): boolean {\n  if (!Number.isFinite(origin)) return false;\n  // Asked of the origin furthest from zero, whichever side it is on: the spacing of doubles\n  // grows with magnitude, not with value, so -1e16 and +1e16 fail this identically.\n  return origin + finestInterval(file) > origin;\n}\n\n/**\n * The shortest span this recording can tell apart: one sample of its fastest channel.\n *\n * The time column is made of these, so nothing below one is a distinction the file is in a\n * position to make — which is what makes it the right size for both the \"can this origin\n * still separate two samples\" question and the \"is this record really somewhere else\"\n * question.\n */\nfunction finestInterval(file: EdfFile): number {\n  let interval = file.header.recordDuration;\n  for (const signal of file.header.signals) {\n    if (signal.isAnnotations || !(signal.samplesPerRecord > 0)) continue;\n    const step = file.header.recordDuration / signal.samplesPerRecord;\n    if (step > 0 && step < interval) interval = step;\n  }\n  return interval;\n}\n\n/**\n * An origin the file's own arithmetic cannot express, reported rather than acted on.\n *\n * Two things went wrong when this was taken at face value, both of them quiet. A file whose\n * records all collapsed onto one instant made the recording zero seconds long, and the\n * window resolver — which had no reason to suspect the recording rather than the request —\n * blamed a flag nobody had passed:\n *\n *     error: --start 100000000000000000s is at or past the end of this\n *            100000000000000000s recording.\n *\n * Slightly below that, the collapse is partial: `records[i].start + recordDuration` equals\n * the start again, so the test for \"does this record overlap the window\" fails for every\n * record whose neighbour rounded onto it. A twelve-row recording wrote four rows, exit 0,\n * no warning — the eight that vanished looked exactly like a file that never had them.\n *\n * Timing from zero is what the file did before 0.4.9 taught it to honour the first\n * timekeeping TAL, and at this magnitude it is the only column that can hold distinct\n * values. The origin is lost, so this says so.\n */\nfunction unusableOrigin(origin: number, file: EdfFile): Diagnostic {\n  return {\n    code: 'DISCONTINUOUS',\n    severity: 'warning',\n    message:\n      `This recording's timekeeping annotations place it ${origin}s from its own start ` +\n      `date, which is too far out for its ${file.header.recordDuration}s records to be told ` +\n      `apart: at that magnitude adding a sample interval leaves the number unchanged.`,\n    hint:\n      'Sample times are written from zero instead, so every row is present and the column ' +\n      'increases. Add the onsets in annotations.csv to recover absolute times if you need them.',\n  };\n}\n"]}

package/dist/edf/annotations.d.ts

@@ -30,6 +30,17 @@ export interface Annotation {
     text: string;
     /** Index of the data record this annotation was stored in. */
     recordIndex: number;
+    /**
+     * True when the file stated a duration that could not be read.
+     *
+     * `duration` is null either way, which is the ambiguity the counts beside it exist to
+     * flag — and those counts were of the whole file while `annotations.csv` is filtered to
+     * the requested window. A conversion of one second of a recording warned that "1
+     * annotation states a duration that is not a number, so its duration_s cell is empty"
+     * about an event two seconds outside it, and failed `--strict` for it. Carrying the fact
+     * on the event lets the count be taken where the window has already been applied.
+     */
+    durationUnreadable?: boolean;
 }
 export interface DecodedRecordAnnotations {
     /** Record start time in seconds, from the leading timekeeping TAL. */

package/dist/edf/annotations.js

@@ -148,7 +148,13 @@ function parseTal(chunk, recordIndex) {
         // A trailing separator yields an empty segment; a timekeeping TAL is all empty.
         if (raw === '')
             continue;
-        annotations.push({ onset, duration, text: raw, recordIndex });
+        annotations.push({
+            onset,
+            duration,
+            text: raw,
+            recordIndex,
+            ...(durationUnreadable ? { durationUnreadable: true } : {}),
+        });
     }
     // Per event rather than per TAL: one TAL may carry several texts, and each becomes a row
     // of annotations.csv with the same cell in it.

package/dist/edf/annotations.js.map

@@ -1 +1 @@
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Its bytes are a\n * run of Time-stamped Annotation Lists, each terminated by a NUL, with the rest\n * of the channel NUL-padded:\n *\n *   +<onset>[<0x15><duration>]<0x14><text><0x14>...<0x00>\n *\n * The first TAL of every data record must carry that record's start time and no\n * text; that is how an EDF+D file states where each record actually sits in time.\n *\n *   +1.25<0x15>0.5<0x14>Seizure onset<0x14><0x00>\n */\n\nimport { decodeUtf8 } from './bytes.js';\n\nconst SEP_TEXT = 0x14; // separates onset/duration from text, and text from text\nconst SEP_DURATION = 0x15; // separates onset from duration\nconst TAL_END = 0x00;\n\nconst TEXT_SEP_CHAR = String.fromCharCode(SEP_TEXT);\nconst DURATION_SEP_CHAR = String.fromCharCode(SEP_DURATION);\n\nexport interface Annotation {\n  /** Seconds from the start of the recording. */\n  onset: number;\n  /**\n   * Seconds, or null when the TAL stated no duration that could be read.\n   *\n   * Null covers two cases the file distinguishes and this field does not: a TAL that omitted\n   * the duration, and a TAL that stated one which is not a number. They are told apart by\n   * `unreadableDurations`, which is what raises the warning; the value itself has nowhere\n   * honest to put \"the file said `abc`\".\n   */\n  duration: number | null;\n  text: string;\n  /** Index of the data record this annotation was stored in. */\n  recordIndex: number;\n}\n\nexport interface DecodedRecordAnnotations {\n  /** Record start time in seconds, from the leading timekeeping TAL. */\n  recordStart: number | null;\n  annotations: Annotation[];\n  /** Non-empty chunks that were not valid TALs, so the caller can report them. */\n  malformed: number;\n  /** Unreadable TALs in first position, which carry a record's start time, not an event. */\n  malformedTimekeeping: number;\n  /**\n   * Events kept whose stated duration could not be read.\n   *\n   * Counted apart again, for the same reason the two above are: the entry was exported and\n   * nothing about it is missing except the one field, so calling it an entry that \"could not\n   * be exported\" describes a loss that did not happen and hides the one that did.\n   */\n  unreadableDurations: number;\n  /**\n   * Events kept whose stated duration is a readable number below zero.\n   *\n   * Separate from the count above because the value survives: it is written to the CSV as\n   * the file gave it, and what is wrong with it is arithmetic rather than parsing.\n   */\n  negativeDurations: number;\n}\n\n/**\n * Decode one data record's annotation bytes.\n *\n * Malformed TALs are skipped rather than thrown, because a single bad annotation\n * should not cost the user an entire conversion. The count of skipped chunks is\n * returned so the caller can tell the user rather than losing them in silence.\n */\nexport function decodeRecordAnnotations(\n  bytes: Uint8Array,\n  recordIndex: number,\n  carriesTimekeeping = true,\n): DecodedRecordAnnotations {\n  const annotations: Annotation[] = [];\n  let recordStart: number | null = null;\n  let isFirstTal = true;\n  let malformed = 0;\n  let malformedTimekeeping = 0;\n  let unreadableDurations = 0;\n  let negativeDurations = 0;\n\n  let start = 0;\n  for (let i = 0; i <= bytes.length; i++) {\n    if (i !== bytes.length && bytes[i] !== TAL_END) continue;\n\n    if (i > start) {\n      const chunk = bytes.subarray(start, i);\n      const parsed = parseTal(chunk, recordIndex);\n\n      // The timekeeping TAL is the one in first POSITION, whether or not it decodes.\n      // Clearing this flag only on a successful parse meant that an unreadable first TAL\n      // promoted the next ordinary annotation to timekeeping, and its onset silently\n      // became the record's start time — shifting every sample in that record. Leaving\n      // recordStart null instead is what the caller already handles, with a fallback\n      // timestamp and an ANNOTATION_DECODE_FAILED warning naming the record.\n      /*\n        Only one annotation channel carries a record's start time.\n\n        This flagged the first TAL of *every* annotation channel as timekeeping. In a second\n        channel the first TAL is an ordinary event — so when one failed to parse, the event\n        was dropped and counted as a lost timekeeping entry, which produced the warning\n        \"3 data records carry a timekeeping annotation that could not be read\" followed by\n        \"No event was lost\". Three events had been lost, and the timekeeping in that file was\n        perfectly readable. Both sentences false, about the same three records.\n      */\n      const isTimekeeping = isFirstTal && carriesTimekeeping;\n      isFirstTal = false;\n\n      if (parsed) {\n        if (isTimekeeping) recordStart = parsed.onset;\n        for (const annotation of parsed.annotations) annotations.push(annotation);\n        unreadableDurations += parsed.unreadableDurations;\n        negativeDurations += parsed.negativeDurations;\n      } else {\n        /*\n          Counted apart from the events, because losing one is a different loss.\n\n          A timekeeping TAL is never exported — it says where the record sits, not what\n          happened — so counting it among the entries that \"could not be exported\" both\n          overstated what was lost from annotations.csv and said nothing about the thing that\n          actually went missing, which is a record's position in time. A file with one\n          unreadable timekeeping TAL and three perfectly good events reported \"1 annotation\n          entry was unreadable and could not be exported\" while exporting all three.\n        */\n        if (isTimekeeping) malformedTimekeeping++;\n        else malformed++;\n      }\n    }\n    start = i + 1;\n  }\n\n  return {\n    recordStart,\n    annotations,\n    malformed,\n    malformedTimekeeping,\n    unreadableDurations,\n    negativeDurations,\n  };\n}\n\ninterface ParsedTal {\n  onset: number;\n  annotations: Annotation[];\n  /** How many of those annotations carry a duration the file stated and this could not read. */\n  unreadableDurations: number;\n  /** How many carry a duration that read as a number below zero. */\n  negativeDurations: number;\n}\n\nfunction parseTal(chunk: Uint8Array, recordIndex: number): ParsedTal | null {\n  // The onset must be explicitly signed; anything else is not a TAL.\n  const first = chunk[0];\n  if (first !== 0x2b /* + */ && first !== 0x2d /* - */) return null;\n\n  const text = decodeUtf8(chunk);\n  const parts = text.split(TEXT_SEP_CHAR);\n  const head = parts[0] ?? '';\n\n  let onsetText = head;\n  let durationText: string | null = null;\n  const durationSep = head.indexOf(DURATION_SEP_CHAR);\n  if (durationSep >= 0) {\n    onsetText = head.slice(0, durationSep);\n    durationText = head.slice(durationSep + 1);\n  }\n\n  const onset = Number(onsetText);\n  if (!Number.isFinite(onset)) return null;\n\n  /*\n    A duration the file stated and this could not read is not the same as no duration.\n\n    Both came out as `null` and so as an empty `duration_s` cell, which the documentation\n    defines as meaning the file gave no duration — so an event whose duration was written as\n    `abc` was exported as an event with no duration, indistinguishable from one beside it\n    that genuinely had none, and nothing anywhere said a field had been dropped. The onset is\n    already held to this standard: one that is not a number costs the whole TAL and is\n    reported. A duration is one field of an otherwise readable event, so the event is kept —\n    but it is counted, and the run says so.\n  */\n  let duration: number | null = null;\n  let durationUnreadable = false;\n  if (durationText !== null && durationText !== '') {\n    const d = Number(durationText);\n    if (Number.isFinite(d)) duration = d;\n    else durationUnreadable = true;\n  }\n\n  /*\n    A duration is a length of time, and a length below zero is not one.\n\n    The value is kept and written as the file gave it — inventing a zero, or dropping it to\n    an empty cell, would put a number in annotations.csv that no writer wrote, which is the\n    one thing this tool does not do. But it is reported, because everything downstream\n    quietly does the wrong thing with it: the recipe this documentation gives for the samples\n    an event covers is `onset_s + duration_s`, which for a duration of -3 ends three seconds\n    before the event starts and selects nothing at all, with no error anywhere.\n  */\n  const durationNegative = duration !== null && duration < 0;\n\n  const annotations: Annotation[] = [];\n  for (const raw of parts.slice(1)) {\n    // A trailing separator yields an empty segment; a timekeeping TAL is all empty.\n    if (raw === '') continue;\n    annotations.push({ onset, duration, text: raw, recordIndex });\n  }\n\n  // Per event rather than per TAL: one TAL may carry several texts, and each becomes a row\n  // of annotations.csv with the same cell in it.\n  return {\n    onset,\n    annotations,\n    unreadableDurations: durationUnreadable ? annotations.length : 0,\n    negativeDurations: durationNegative ? annotations.length : 0,\n  };\n}\n\nexport { SEP_TEXT, SEP_DURATION, TAL_END };\n"]}
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Its bytes are a\n * run of Time-stamped Annotation Lists, each terminated by a NUL, with the rest\n * of the channel NUL-padded:\n *\n *   +<onset>[<0x15><duration>]<0x14><text><0x14>...<0x00>\n *\n * The first TAL of every data record must carry that record's start time and no\n * text; that is how an EDF+D file states where each record actually sits in time.\n *\n *   +1.25<0x15>0.5<0x14>Seizure onset<0x14><0x00>\n */\n\nimport { decodeUtf8 } from './bytes.js';\n\nconst SEP_TEXT = 0x14; // separates onset/duration from text, and text from text\nconst SEP_DURATION = 0x15; // separates onset from duration\nconst TAL_END = 0x00;\n\nconst TEXT_SEP_CHAR = String.fromCharCode(SEP_TEXT);\nconst DURATION_SEP_CHAR = String.fromCharCode(SEP_DURATION);\n\nexport interface Annotation {\n  /** Seconds from the start of the recording. */\n  onset: number;\n  /**\n   * Seconds, or null when the TAL stated no duration that could be read.\n   *\n   * Null covers two cases the file distinguishes and this field does not: a TAL that omitted\n   * the duration, and a TAL that stated one which is not a number. They are told apart by\n   * `unreadableDurations`, which is what raises the warning; the value itself has nowhere\n   * honest to put \"the file said `abc`\".\n   */\n  duration: number | null;\n  text: string;\n  /** Index of the data record this annotation was stored in. */\n  recordIndex: number;\n  /**\n   * True when the file stated a duration that could not be read.\n   *\n   * `duration` is null either way, which is the ambiguity the counts beside it exist to\n   * flag — and those counts were of the whole file while `annotations.csv` is filtered to\n   * the requested window. A conversion of one second of a recording warned that \"1\n   * annotation states a duration that is not a number, so its duration_s cell is empty\"\n   * about an event two seconds outside it, and failed `--strict` for it. Carrying the fact\n   * on the event lets the count be taken where the window has already been applied.\n   */\n  durationUnreadable?: boolean;\n}\n\nexport interface DecodedRecordAnnotations {\n  /** Record start time in seconds, from the leading timekeeping TAL. */\n  recordStart: number | null;\n  annotations: Annotation[];\n  /** Non-empty chunks that were not valid TALs, so the caller can report them. */\n  malformed: number;\n  /** Unreadable TALs in first position, which carry a record's start time, not an event. */\n  malformedTimekeeping: number;\n  /**\n   * Events kept whose stated duration could not be read.\n   *\n   * Counted apart again, for the same reason the two above are: the entry was exported and\n   * nothing about it is missing except the one field, so calling it an entry that \"could not\n   * be exported\" describes a loss that did not happen and hides the one that did.\n   */\n  unreadableDurations: number;\n  /**\n   * Events kept whose stated duration is a readable number below zero.\n   *\n   * Separate from the count above because the value survives: it is written to the CSV as\n   * the file gave it, and what is wrong with it is arithmetic rather than parsing.\n   */\n  negativeDurations: number;\n}\n\n/**\n * Decode one data record's annotation bytes.\n *\n * Malformed TALs are skipped rather than thrown, because a single bad annotation\n * should not cost the user an entire conversion. The count of skipped chunks is\n * returned so the caller can tell the user rather than losing them in silence.\n */\nexport function decodeRecordAnnotations(\n  bytes: Uint8Array,\n  recordIndex: number,\n  carriesTimekeeping = true,\n): DecodedRecordAnnotations {\n  const annotations: Annotation[] = [];\n  let recordStart: number | null = null;\n  let isFirstTal = true;\n  let malformed = 0;\n  let malformedTimekeeping = 0;\n  let unreadableDurations = 0;\n  let negativeDurations = 0;\n\n  let start = 0;\n  for (let i = 0; i <= bytes.length; i++) {\n    if (i !== bytes.length && bytes[i] !== TAL_END) continue;\n\n    if (i > start) {\n      const chunk = bytes.subarray(start, i);\n      const parsed = parseTal(chunk, recordIndex);\n\n      // The timekeeping TAL is the one in first POSITION, whether or not it decodes.\n      // Clearing this flag only on a successful parse meant that an unreadable first TAL\n      // promoted the next ordinary annotation to timekeeping, and its onset silently\n      // became the record's start time — shifting every sample in that record. Leaving\n      // recordStart null instead is what the caller already handles, with a fallback\n      // timestamp and an ANNOTATION_DECODE_FAILED warning naming the record.\n      /*\n        Only one annotation channel carries a record's start time.\n\n        This flagged the first TAL of *every* annotation channel as timekeeping. In a second\n        channel the first TAL is an ordinary event — so when one failed to parse, the event\n        was dropped and counted as a lost timekeeping entry, which produced the warning\n        \"3 data records carry a timekeeping annotation that could not be read\" followed by\n        \"No event was lost\". Three events had been lost, and the timekeeping in that file was\n        perfectly readable. Both sentences false, about the same three records.\n      */\n      const isTimekeeping = isFirstTal && carriesTimekeeping;\n      isFirstTal = false;\n\n      if (parsed) {\n        if (isTimekeeping) recordStart = parsed.onset;\n        for (const annotation of parsed.annotations) annotations.push(annotation);\n        unreadableDurations += parsed.unreadableDurations;\n        negativeDurations += parsed.negativeDurations;\n      } else {\n        /*\n          Counted apart from the events, because losing one is a different loss.\n\n          A timekeeping TAL is never exported — it says where the record sits, not what\n          happened — so counting it among the entries that \"could not be exported\" both\n          overstated what was lost from annotations.csv and said nothing about the thing that\n          actually went missing, which is a record's position in time. A file with one\n          unreadable timekeeping TAL and three perfectly good events reported \"1 annotation\n          entry was unreadable and could not be exported\" while exporting all three.\n        */\n        if (isTimekeeping) malformedTimekeeping++;\n        else malformed++;\n      }\n    }\n    start = i + 1;\n  }\n\n  return {\n    recordStart,\n    annotations,\n    malformed,\n    malformedTimekeeping,\n    unreadableDurations,\n    negativeDurations,\n  };\n}\n\ninterface ParsedTal {\n  onset: number;\n  annotations: Annotation[];\n  /** How many of those annotations carry a duration the file stated and this could not read. */\n  unreadableDurations: number;\n  /** How many carry a duration that read as a number below zero. */\n  negativeDurations: number;\n}\n\nfunction parseTal(chunk: Uint8Array, recordIndex: number): ParsedTal | null {\n  // The onset must be explicitly signed; anything else is not a TAL.\n  const first = chunk[0];\n  if (first !== 0x2b /* + */ && first !== 0x2d /* - */) return null;\n\n  const text = decodeUtf8(chunk);\n  const parts = text.split(TEXT_SEP_CHAR);\n  const head = parts[0] ?? '';\n\n  let onsetText = head;\n  let durationText: string | null = null;\n  const durationSep = head.indexOf(DURATION_SEP_CHAR);\n  if (durationSep >= 0) {\n    onsetText = head.slice(0, durationSep);\n    durationText = head.slice(durationSep + 1);\n  }\n\n  const onset = Number(onsetText);\n  if (!Number.isFinite(onset)) return null;\n\n  /*\n    A duration the file stated and this could not read is not the same as no duration.\n\n    Both came out as `null` and so as an empty `duration_s` cell, which the documentation\n    defines as meaning the file gave no duration — so an event whose duration was written as\n    `abc` was exported as an event with no duration, indistinguishable from one beside it\n    that genuinely had none, and nothing anywhere said a field had been dropped. The onset is\n    already held to this standard: one that is not a number costs the whole TAL and is\n    reported. A duration is one field of an otherwise readable event, so the event is kept —\n    but it is counted, and the run says so.\n  */\n  let duration: number | null = null;\n  let durationUnreadable = false;\n  if (durationText !== null && durationText !== '') {\n    const d = Number(durationText);\n    if (Number.isFinite(d)) duration = d;\n    else durationUnreadable = true;\n  }\n\n  /*\n    A duration is a length of time, and a length below zero is not one.\n\n    The value is kept and written as the file gave it — inventing a zero, or dropping it to\n    an empty cell, would put a number in annotations.csv that no writer wrote, which is the\n    one thing this tool does not do. But it is reported, because everything downstream\n    quietly does the wrong thing with it: the recipe this documentation gives for the samples\n    an event covers is `onset_s + duration_s`, which for a duration of -3 ends three seconds\n    before the event starts and selects nothing at all, with no error anywhere.\n  */\n  const durationNegative = duration !== null && duration < 0;\n\n  const annotations: Annotation[] = [];\n  for (const raw of parts.slice(1)) {\n    // A trailing separator yields an empty segment; a timekeeping TAL is all empty.\n    if (raw === '') continue;\n    annotations.push({\n      onset,\n      duration,\n      text: raw,\n      recordIndex,\n      ...(durationUnreadable ? { durationUnreadable: true } : {}),\n    });\n  }\n\n  // Per event rather than per TAL: one TAL may carry several texts, and each becomes a row\n  // of annotations.csv with the same cell in it.\n  return {\n    onset,\n    annotations,\n    unreadableDurations: durationUnreadable ? annotations.length : 0,\n    negativeDurations: durationNegative ? annotations.length : 0,\n  };\n}\n\nexport { SEP_TEXT, SEP_DURATION, TAL_END };\n"]}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.5.89",
+  "version": "0.5.91",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",