edf2csv 0.5.38 → 0.5.39

package/CHANGELOG.md

@@ -3,6 +3,32 @@
 Notable changes to edf2csv. Versions follow [semantic versioning](https://semver.org); while the
 major version is 0, a minor bump may contain breaking changes.
 
+## 0.5.39
+
+### Fixed: three lost events reported as "No event was lost"
+
+Only the first annotation channel carries a record's timekeeping TAL. The decoder flagged the
+first TAL of *every* annotation channel as timekeeping — so in a file with two of them, an
+unreadable first entry in the second channel was an ordinary event being dropped and counted
+as a lost timekeeping entry.
+
+The file then converted with this:
+
+```
+warning: 3 data records carry a timekeeping annotation that could not be read, so they do
+         not say where in time they sit.
+         No event was lost — a timekeeping annotation states a record's start time and is
+         never exported. Times are derived from the records that could be read.
+```
+
+Both sentences false, about the same three records. That file's timekeeping is perfectly
+readable, and three events were lost — silently, since the one warning raised said in as many
+words that nothing had been.
+
+0.5.29 taught the reader which channel carries timekeeping; the decoder is told now too. The
+same file reports "3 annotation entries were unreadable and could not be exported", which is
+what happened.
+
 ## 0.5.38
 
 ### Fixed: the API reference's `buildPlan` recipe halved the row estimate it exists to predict

package/dist/edf/annotations.d.ts

@@ -40,6 +40,6 @@ export interface DecodedRecordAnnotations {
  * should not cost the user an entire conversion. The count of skipped chunks is
  * returned so the caller can tell the user rather than losing them in silence.
  */
-export declare function decodeRecordAnnotations(bytes: Uint8Array, recordIndex: number): DecodedRecordAnnotations;
+export declare function decodeRecordAnnotations(bytes: Uint8Array, recordIndex: number, carriesTimekeeping?: boolean): DecodedRecordAnnotations;
 export { SEP_TEXT, SEP_DURATION, TAL_END };
 //# sourceMappingURL=annotations.d.ts.map

package/dist/edf/annotations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/edf/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAIH,QAAA,MAAM,QAAQ,KAAO,CAAC;AACtB,QAAA,MAAM,YAAY,KAAO,CAAC;AAC1B,QAAA,MAAM,OAAO,IAAO,CAAC;AAKrB,MAAM,WAAW,UAAU;IACzB,+CAA+C;IAC/C,KAAK,EAAE,MAAM,CAAC;IACd,wDAAwD;IACxD,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,8DAA8D;IAC9D,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,wBAAwB;IACvC,sEAAsE;IACtE,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,gFAAgF;IAChF,SAAS,EAAE,MAAM,CAAC;IAClB,0FAA0F;IAC1F,oBAAoB,EAAE,MAAM,CAAC;CAC9B;AAED;;;;;;GAMG;AACH,wBAAgB,uBAAuB,CACrC,KAAK,EAAE,UAAU,EACjB,WAAW,EAAE,MAAM,GAClB,wBAAwB,CA8C1B;AA2CD,OAAO,EAAE,QAAQ,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC"}
+{"version":3,"file":"annotations.d.ts","sourceRoot":"","sources":["../../src/edf/annotations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAIH,QAAA,MAAM,QAAQ,KAAO,CAAC;AACtB,QAAA,MAAM,YAAY,KAAO,CAAC;AAC1B,QAAA,MAAM,OAAO,IAAO,CAAC;AAKrB,MAAM,WAAW,UAAU;IACzB,+CAA+C;IAC/C,KAAK,EAAE,MAAM,CAAC;IACd,wDAAwD;IACxD,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,8DAA8D;IAC9D,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,wBAAwB;IACvC,sEAAsE;IACtE,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,gFAAgF;IAChF,SAAS,EAAE,MAAM,CAAC;IAClB,0FAA0F;IAC1F,oBAAoB,EAAE,MAAM,CAAC;CAC9B;AAED;;;;;;GAMG;AACH,wBAAgB,uBAAuB,CACrC,KAAK,EAAE,UAAU,EACjB,WAAW,EAAE,MAAM,EACnB,kBAAkB,UAAO,GACxB,wBAAwB,CAwD1B;AA2CD,OAAO,EAAE,QAAQ,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC"}

package/dist/edf/annotations.js

@@ -25,7 +25,7 @@ const DURATION_SEP_CHAR = String.fromCharCode(SEP_DURATION);
  * should not cost the user an entire conversion. The count of skipped chunks is
  * returned so the caller can tell the user rather than losing them in silence.
  */
-export function decodeRecordAnnotations(bytes, recordIndex) {
+export function decodeRecordAnnotations(bytes, recordIndex, carriesTimekeeping = true) {
     const annotations = [];
     let recordStart = null;
     let isFirstTal = true;
@@ -44,7 +44,17 @@ export function decodeRecordAnnotations(bytes, recordIndex) {
             // became the record's start time — shifting every sample in that record. Leaving
             // recordStart null instead is what the caller already handles, with a fallback
             // timestamp and an ANNOTATION_DECODE_FAILED warning naming the record.
-            const isTimekeeping = isFirstTal;
+            /*
+              Only one annotation channel carries a record's start time.
+      
+              This flagged the first TAL of *every* annotation channel as timekeeping. In a second
+              channel the first TAL is an ordinary event — so when one failed to parse, the event
+              was dropped and counted as a lost timekeeping entry, which produced the warning
+              "3 data records carry a timekeeping annotation that could not be read" followed by
+              "No event was lost". Three events had been lost, and the timekeeping in that file was
+              perfectly readable. Both sentences false, about the same three records.
+            */
+            const isTimekeeping = isFirstTal && carriesTimekeeping;
             isFirstTal = false;
             if (parsed) {
                 if (isTimekeeping)

package/dist/edf/annotations.js.map

@@ -1 +1 @@
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Its bytes are a\n * run of Time-stamped Annotation Lists, each terminated by a NUL, with the rest\n * of the channel NUL-padded:\n *\n *   +<onset>[<0x15><duration>]<0x14><text><0x14>...<0x00>\n *\n * The first TAL of every data record must carry that record's start time and no\n * text; that is how an EDF+D file states where each record actually sits in time.\n *\n *   +1.25<0x15>0.5<0x14>Seizure onset<0x14><0x00>\n */\n\nimport { decodeUtf8 } from './bytes.js';\n\nconst SEP_TEXT = 0x14; // separates onset/duration from text, and text from text\nconst SEP_DURATION = 0x15; // separates onset from duration\nconst TAL_END = 0x00;\n\nconst TEXT_SEP_CHAR = String.fromCharCode(SEP_TEXT);\nconst DURATION_SEP_CHAR = String.fromCharCode(SEP_DURATION);\n\nexport interface Annotation {\n  /** Seconds from the start of the recording. */\n  onset: number;\n  /** Seconds, or null when the TAL omitted a duration. */\n  duration: number | null;\n  text: string;\n  /** Index of the data record this annotation was stored in. */\n  recordIndex: number;\n}\n\nexport interface DecodedRecordAnnotations {\n  /** Record start time in seconds, from the leading timekeeping TAL. */\n  recordStart: number | null;\n  annotations: Annotation[];\n  /** Non-empty chunks that were not valid TALs, so the caller can report them. */\n  malformed: number;\n  /** Unreadable TALs in first position, which carry a record's start time, not an event. */\n  malformedTimekeeping: number;\n}\n\n/**\n * Decode one data record's annotation bytes.\n *\n * Malformed TALs are skipped rather than thrown, because a single bad annotation\n * should not cost the user an entire conversion. The count of skipped chunks is\n * returned so the caller can tell the user rather than losing them in silence.\n */\nexport function decodeRecordAnnotations(\n  bytes: Uint8Array,\n  recordIndex: number,\n): DecodedRecordAnnotations {\n  const annotations: Annotation[] = [];\n  let recordStart: number | null = null;\n  let isFirstTal = true;\n  let malformed = 0;\n  let malformedTimekeeping = 0;\n\n  let start = 0;\n  for (let i = 0; i <= bytes.length; i++) {\n    if (i !== bytes.length && bytes[i] !== TAL_END) continue;\n\n    if (i > start) {\n      const chunk = bytes.subarray(start, i);\n      const parsed = parseTal(chunk, recordIndex);\n\n      // The timekeeping TAL is the one in first POSITION, whether or not it decodes.\n      // Clearing this flag only on a successful parse meant that an unreadable first TAL\n      // promoted the next ordinary annotation to timekeeping, and its onset silently\n      // became the record's start time — shifting every sample in that record. Leaving\n      // recordStart null instead is what the caller already handles, with a fallback\n      // timestamp and an ANNOTATION_DECODE_FAILED warning naming the record.\n      const isTimekeeping = isFirstTal;\n      isFirstTal = false;\n\n      if (parsed) {\n        if (isTimekeeping) recordStart = parsed.onset;\n        for (const annotation of parsed.annotations) annotations.push(annotation);\n      } else {\n        /*\n          Counted apart from the events, because losing one is a different loss.\n\n          A timekeeping TAL is never exported — it says where the record sits, not what\n          happened — so counting it among the entries that \"could not be exported\" both\n          overstated what was lost from annotations.csv and said nothing about the thing that\n          actually went missing, which is a record's position in time. A file with one\n          unreadable timekeeping TAL and three perfectly good events reported \"1 annotation\n          entry was unreadable and could not be exported\" while exporting all three.\n        */\n        if (isTimekeeping) malformedTimekeeping++;\n        else malformed++;\n      }\n    }\n    start = i + 1;\n  }\n\n  return { recordStart, annotations, malformed, malformedTimekeeping };\n}\n\ninterface ParsedTal {\n  onset: number;\n  annotations: Annotation[];\n}\n\nfunction parseTal(chunk: Uint8Array, recordIndex: number): ParsedTal | null {\n  // The onset must be explicitly signed; anything else is not a TAL.\n  const first = chunk[0];\n  if (first !== 0x2b /* + */ && first !== 0x2d /* - */) return null;\n\n  const text = decodeUtf8(chunk);\n  const parts = text.split(TEXT_SEP_CHAR);\n  const head = parts[0] ?? '';\n\n  let onsetText = head;\n  let durationText: string | null = null;\n  const durationSep = head.indexOf(DURATION_SEP_CHAR);\n  if (durationSep >= 0) {\n    onsetText = head.slice(0, durationSep);\n    durationText = head.slice(durationSep + 1);\n  }\n\n  const onset = Number(onsetText);\n  if (!Number.isFinite(onset)) return null;\n\n  let duration: number | null = null;\n  if (durationText !== null && durationText !== '') {\n    const d = Number(durationText);\n    duration = Number.isFinite(d) ? d : null;\n  }\n\n  const annotations: Annotation[] = [];\n  for (const raw of parts.slice(1)) {\n    // A trailing separator yields an empty segment; a timekeeping TAL is all empty.\n    if (raw === '') continue;\n    annotations.push({ onset, duration, text: raw, recordIndex });\n  }\n\n  return { onset, annotations };\n}\n\nexport { SEP_TEXT, SEP_DURATION, TAL_END };\n"]}
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Its bytes are a\n * run of Time-stamped Annotation Lists, each terminated by a NUL, with the rest\n * of the channel NUL-padded:\n *\n *   +<onset>[<0x15><duration>]<0x14><text><0x14>...<0x00>\n *\n * The first TAL of every data record must carry that record's start time and no\n * text; that is how an EDF+D file states where each record actually sits in time.\n *\n *   +1.25<0x15>0.5<0x14>Seizure onset<0x14><0x00>\n */\n\nimport { decodeUtf8 } from './bytes.js';\n\nconst SEP_TEXT = 0x14; // separates onset/duration from text, and text from text\nconst SEP_DURATION = 0x15; // separates onset from duration\nconst TAL_END = 0x00;\n\nconst TEXT_SEP_CHAR = String.fromCharCode(SEP_TEXT);\nconst DURATION_SEP_CHAR = String.fromCharCode(SEP_DURATION);\n\nexport interface Annotation {\n  /** Seconds from the start of the recording. */\n  onset: number;\n  /** Seconds, or null when the TAL omitted a duration. */\n  duration: number | null;\n  text: string;\n  /** Index of the data record this annotation was stored in. */\n  recordIndex: number;\n}\n\nexport interface DecodedRecordAnnotations {\n  /** Record start time in seconds, from the leading timekeeping TAL. */\n  recordStart: number | null;\n  annotations: Annotation[];\n  /** Non-empty chunks that were not valid TALs, so the caller can report them. */\n  malformed: number;\n  /** Unreadable TALs in first position, which carry a record's start time, not an event. */\n  malformedTimekeeping: number;\n}\n\n/**\n * Decode one data record's annotation bytes.\n *\n * Malformed TALs are skipped rather than thrown, because a single bad annotation\n * should not cost the user an entire conversion. The count of skipped chunks is\n * returned so the caller can tell the user rather than losing them in silence.\n */\nexport function decodeRecordAnnotations(\n  bytes: Uint8Array,\n  recordIndex: number,\n  carriesTimekeeping = true,\n): DecodedRecordAnnotations {\n  const annotations: Annotation[] = [];\n  let recordStart: number | null = null;\n  let isFirstTal = true;\n  let malformed = 0;\n  let malformedTimekeeping = 0;\n\n  let start = 0;\n  for (let i = 0; i <= bytes.length; i++) {\n    if (i !== bytes.length && bytes[i] !== TAL_END) continue;\n\n    if (i > start) {\n      const chunk = bytes.subarray(start, i);\n      const parsed = parseTal(chunk, recordIndex);\n\n      // The timekeeping TAL is the one in first POSITION, whether or not it decodes.\n      // Clearing this flag only on a successful parse meant that an unreadable first TAL\n      // promoted the next ordinary annotation to timekeeping, and its onset silently\n      // became the record's start time — shifting every sample in that record. Leaving\n      // recordStart null instead is what the caller already handles, with a fallback\n      // timestamp and an ANNOTATION_DECODE_FAILED warning naming the record.\n      /*\n        Only one annotation channel carries a record's start time.\n\n        This flagged the first TAL of *every* annotation channel as timekeeping. In a second\n        channel the first TAL is an ordinary event — so when one failed to parse, the event\n        was dropped and counted as a lost timekeeping entry, which produced the warning\n        \"3 data records carry a timekeeping annotation that could not be read\" followed by\n        \"No event was lost\". Three events had been lost, and the timekeeping in that file was\n        perfectly readable. Both sentences false, about the same three records.\n      */\n      const isTimekeeping = isFirstTal && carriesTimekeeping;\n      isFirstTal = false;\n\n      if (parsed) {\n        if (isTimekeeping) recordStart = parsed.onset;\n        for (const annotation of parsed.annotations) annotations.push(annotation);\n      } else {\n        /*\n          Counted apart from the events, because losing one is a different loss.\n\n          A timekeeping TAL is never exported — it says where the record sits, not what\n          happened — so counting it among the entries that \"could not be exported\" both\n          overstated what was lost from annotations.csv and said nothing about the thing that\n          actually went missing, which is a record's position in time. A file with one\n          unreadable timekeeping TAL and three perfectly good events reported \"1 annotation\n          entry was unreadable and could not be exported\" while exporting all three.\n        */\n        if (isTimekeeping) malformedTimekeeping++;\n        else malformed++;\n      }\n    }\n    start = i + 1;\n  }\n\n  return { recordStart, annotations, malformed, malformedTimekeeping };\n}\n\ninterface ParsedTal {\n  onset: number;\n  annotations: Annotation[];\n}\n\nfunction parseTal(chunk: Uint8Array, recordIndex: number): ParsedTal | null {\n  // The onset must be explicitly signed; anything else is not a TAL.\n  const first = chunk[0];\n  if (first !== 0x2b /* + */ && first !== 0x2d /* - */) return null;\n\n  const text = decodeUtf8(chunk);\n  const parts = text.split(TEXT_SEP_CHAR);\n  const head = parts[0] ?? '';\n\n  let onsetText = head;\n  let durationText: string | null = null;\n  const durationSep = head.indexOf(DURATION_SEP_CHAR);\n  if (durationSep >= 0) {\n    onsetText = head.slice(0, durationSep);\n    durationText = head.slice(durationSep + 1);\n  }\n\n  const onset = Number(onsetText);\n  if (!Number.isFinite(onset)) return null;\n\n  let duration: number | null = null;\n  if (durationText !== null && durationText !== '') {\n    const d = Number(durationText);\n    duration = Number.isFinite(d) ? d : null;\n  }\n\n  const annotations: Annotation[] = [];\n  for (const raw of parts.slice(1)) {\n    // A trailing separator yields an empty segment; a timekeeping TAL is all empty.\n    if (raw === '') continue;\n    annotations.push({ onset, duration, text: raw, recordIndex });\n  }\n\n  return { onset, annotations };\n}\n\nexport { SEP_TEXT, SEP_DURATION, TAL_END };\n"]}

package/dist/edf/reader.js

@@ -359,8 +359,8 @@ export class EdfFile {
                 if (bytesRead < buffer.length) {
                     throw changedWhileReading(record, buffer.length, bytesRead, 'annotation data');
                 }
-                const decoded = decodeRecordAnnotations(buffer, record);
                 // Only the timekeeping channel carries the record's start; see timekeepingSignal.
+                const decoded = decodeRecordAnnotations(buffer, record, channel === timekeeping);
                 if (channel === timekeeping)
                     recordStarts[record] = decoded.recordStart;
                 for (const annotation of decoded.annotations)

package/dist/edf/reader.js.map

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* Chunked reader for EDF / EDF+ files.\n *\n * Data records are read in batches sized by a byte budget rather than all at once,\n * so peak memory stays flat regardless of how long the recording is. A 4 GB file\n * and a 4 MB file use the same working set.\n */\n\nimport { open, stat } from 'node:fs/promises';\nimport type { FileHandle } from 'node:fs/promises';\n\nimport { createHash } from 'node:crypto';\n\nimport { EdfError } from './errors.js';\nimport type { Diagnostic } from './errors.js';\nimport { FIXED_HEADER_BYTES, SIGNAL_HEADER_BYTES, parseHeader, peekSignalCount } from './header.js';\nimport type { EdfHeader, EdfSignal } from './header.js';\nimport { decodeRecordAnnotations } from './annotations.js';\nimport type { Annotation } from './annotations.js';\nimport { decodeLatin1, readInt16LE } from './bytes.js';\n\n/**\n * How far `readOrigin` looks for a record that states its own start time.\n *\n * Enough that one or two unreadable timekeeping entries at the top of a file cost nothing,\n * few enough that `--info` stays a header read rather than a scan.\n */\nconst RECORDS_SEARCHED_FOR_ORIGIN = 16;\n\n/** Default read budget per batch. Large enough to amortise syscalls, small enough to stay cheap. */\nexport const DEFAULT_CHUNK_BYTES = 8 * 1024 * 1024;\n\nexport interface RecordBatch {\n  /** Index of the first record in this batch, relative to the whole file. */\n  firstRecordIndex: number;\n  recordCount: number;\n  /**\n   * Raw record bytes, `recordCount * header.recordBytes` long.\n   *\n   * The buffer is reused between iterations. Copy anything you need to keep past\n   * the current loop turn.\n   */\n  data: Uint8Array;\n}\n\nexport interface ReadRecordsOptions {\n  /** First record to read, inclusive. Defaults to 0. */\n  startRecord?: number;\n  /** Last record to read, exclusive. Defaults to the file's record count. */\n  endRecord?: number;\n  chunkBytes?: number;\n}\n\nexport class EdfFile {\n  readonly path: string;\n  readonly fileSize: number;\n  /**\n   * Last-modified time when this file was opened, in milliseconds, for the same reason as\n   * `fileSize`.\n   *\n   * Kept as the raw number rather than a Date because `new Date(ms).getTime()` truncates to\n   * whole milliseconds: comparing that against a later `fstat`, which carries the\n   * filesystem's sub-millisecond precision, reported every undisturbed conversion as one\n   * whose input had changed underneath it.\n   */\n  readonly modifiedAtOpenMs: number;\n  readonly header: EdfHeader;\n  /** Records actually present in the file, which may differ from the header's claim. */\n  readonly recordCount: number;\n  readonly trailingBytes: number;\n  readonly diagnostics: Diagnostic[];\n\n  #handle: FileHandle;\n  #closed = false;\n  /** The last answer `changedSinceOpen` computed, so it survives the file being closed. */\n  #changed: boolean | null = null;\n\n  private constructor(init: {\n    path: string;\n    fileSize: number;\n    modifiedAtOpenMs: number;\n    header: EdfHeader;\n    recordCount: number;\n    trailingBytes: number;\n    diagnostics: Diagnostic[];\n    handle: FileHandle;\n  }) {\n    this.path = init.path;\n    this.fileSize = init.fileSize;\n    this.modifiedAtOpenMs = init.modifiedAtOpenMs;\n    this.header = init.header;\n    this.recordCount = init.recordCount;\n    this.trailingBytes = init.trailingBytes;\n    this.diagnostics = init.diagnostics;\n    this.#handle = init.handle;\n  }\n\n  /**\n   * SHA-256 of the bytes this conversion actually read.\n   *\n   * Hashed through the open descriptor, over exactly the `fileSize` bytes that were there\n   * when the file was opened — the same number every record count and window in the output\n   * was derived from. Re-opening the path to hash it afterwards described whatever was at\n   * that name by then: a recording still being written grew from 2,000 records to 3,000\n   * mid-conversion and metadata.json recorded `data_records: 2000` beside the checksum and\n   * byte count of the 3,000-record file, which is provenance for bytes nobody converted.\n   * Replacing the file at that path did the same thing more completely.\n   */\n  async sha256(): Promise<string> {\n    this.#assertOpen();\n    const hash = createHash('sha256');\n    const buffer = Buffer.alloc(Math.min(this.fileSize, 4 * 1024 * 1024) || 1);\n    for (let at = 0; at < this.fileSize; ) {\n      const want = Math.min(buffer.length, this.fileSize - at);\n      const { bytesRead } = await this.#handle.read(buffer, 0, want, at);\n      if (bytesRead <= 0) {\n        throw new EdfError(\n          'UNREADABLE',\n          `Expected ${this.fileSize} bytes to checksum but the file ended at ${at}; ` +\n            `it appears to have changed size while it was being read.`,\n          'Make sure the recording is not still being written to, then try again.',\n        );\n      }\n      hash.update(buffer.subarray(0, bytesRead));\n      at += bytesRead;\n    }\n    return hash.digest('hex');\n  }\n\n  /**\n   * Whether the file has changed since it was opened, by size or by modification time.\n   *\n   * Checked through the descriptor, so it answers for the bytes that were read rather than\n   * for whatever now answers to the same name. A recording still being written is the\n   * ordinary cause, and the conversion is still correct for the data it saw — it is the\n   * claim that the output describes the file as it now stands that stops being true.\n   */\n  async changedSinceOpen(): Promise<boolean> {\n    /*\n      A closed file remembers its last answer rather than inventing a new one.\n\n      Returning false once closed asserted \"it did not change\", which is not something a\n      closed descriptor can know — and `convert()` closes the file before it returns, so\n      `result.file.changedSinceOpen()` denied the very change the INPUT_CHANGED diagnostic\n      in the same result object had just reported. One object, two answers.\n\n      `convert()` always asks before closing, so the cached answer is the true one. A caller\n      who closed the file without ever asking gets an error, which is the same treatment\n      every other method on a closed file gets.\n    */\n    if (this.#closed) {\n      if (this.#changed !== null) return this.#changed;\n      throw new EdfError(\n        'UNREADABLE',\n        `\"${this.path}\" is closed, and whether it changed while it was open was never checked.`,\n        'Ask before closing the file. A ConvertResult carries the answer already, since ' +\n          'convert() checks it on the way out.',\n      );\n    }\n    const now = await this.#handle.stat().catch(() => null);\n    if (now === null) return this.#changed ?? false;\n    this.#changed = now.size !== this.fileSize || now.mtimeMs !== this.modifiedAtOpenMs;\n    return this.#changed;\n  }\n\n  static async open(path: string): Promise<EdfFile> {\n    const info = await stat(path).catch((cause: unknown) => {\n      throw new EdfError('UNREADABLE', `Cannot read \"${path}\": ${describe(cause)}`);\n    });\n    if (info.isDirectory()) {\n      throw new EdfError('UNREADABLE', `\"${path}\" is a directory, not an EDF file.`);\n    }\n    if (!info.isFile()) {\n      throw new EdfError('UNREADABLE', `\"${path}\" is not a regular file.`);\n    }\n\n    const handle = await open(path, 'r');\n    try {\n      const fixed = Buffer.alloc(Math.min(FIXED_HEADER_BYTES, info.size));\n      if (fixed.length > 0) {\n        const bytesRead = await readFully(handle, fixed, 0, fixed.length, 0);\n        if (bytesRead < fixed.length) throw changedWhileReading(0, fixed.length, bytesRead);\n      }\n\n      // The signal count decides how much more header there is to read. Read by the header\n      // parser itself, so the two cannot disagree about which files are readable: this used\n      // to have its own Number(), which tolerated the NUL padding sloppy writers emit but\n      // not the comma decimal separator that COMMA_DECIMAL exists to accept.\n      let headerBuffer = fixed;\n      if (fixed.length === FIXED_HEADER_BYTES) {\n        const ns = peekSignalCount(fixed);\n        if (ns !== null) {\n          const total = FIXED_HEADER_BYTES + ns * SIGNAL_HEADER_BYTES;\n          if (total <= info.size) {\n            headerBuffer = Buffer.alloc(total);\n            const bytesRead = await readFully(handle, headerBuffer, 0, total, 0);\n            if (bytesRead < total) throw changedWhileReading(0, total, bytesRead);\n          }\n        }\n      }\n\n      const { header, recordCount, trailingBytes, diagnostics } = parseHeader(\n        headerBuffer,\n        info.size,\n      );\n\n      return new EdfFile({\n        path,\n        fileSize: info.size,\n        modifiedAtOpenMs: info.mtimeMs,\n        header,\n        recordCount,\n        trailingBytes,\n        diagnostics,\n        handle,\n      });\n    } catch (error) {\n      await handle.close().catch(() => {});\n      throw error;\n    }\n  }\n\n  /** Signal channels, excluding the EDF+ annotations channel. */\n  get dataSignals(): EdfSignal[] {\n    return this.header.signals.filter((s) => !s.isAnnotations);\n  }\n\n  /**\n   * The annotation channel a record's start time is read from.\n   *\n   * EDF+ puts the timekeeping TAL first in the first annotation channel, and this was read as\n   * `annotationSignals[0]` — the first one declared, whether or not it can hold anything. A\n   * writer that declares an annotation channel and gives it zero samples per record leaves a\n   * slot of zero bytes, so nothing was read from it, and the timekeeping in the channel after\n   * it went unread: a three-record EDF+D reported \"3 of 3 data records carry no readable\n   * timekeeping annotation\" about three that were perfectly readable, and timed the file from\n   * zero.\n   *\n   * A channel with no room carries nothing, so it is not the one the TAL is in.\n   */\n  get timekeepingSignal(): EdfSignal | undefined {\n    return this.annotationSignals.find((signal) => signal.samplesPerRecord > 0);\n  }\n\n  get annotationSignals(): EdfSignal[] {\n    return this.header.signals.filter((s) => s.isAnnotations);\n  }\n\n  /** Total recording duration in seconds, based on records actually present. */\n  get durationSeconds(): number {\n    return this.recordCount * this.header.recordDuration;\n  }\n\n  /** Read a half-open range of records in batches. */\n  async *readRecords(options: ReadRecordsOptions = {}): AsyncGenerator<RecordBatch> {\n    this.#assertOpen();\n\n    /*\n      Record bounds have to be whole records.\n\n      A fractional `startRecord` was carried straight into `position = headerBytes +\n      record * recordBytes`, so reading from 1.5 began half a record in and every sample\n      after it was decoded from the wrong offset: on the two-channel test fixture it\n      returned channel 2's values under channel 1's signal, with no error. Clamping\n      silently would be no better, since a caller asking for record 1.5 has a bug the\n      library should name rather than paper over.\n    */\n    for (const [name, value] of [\n      ['startRecord', options.startRecord],\n      ['endRecord', options.endRecord],\n    ] as const) {\n      if (value !== undefined && !Number.isInteger(value)) {\n        throw new EdfError(\n          'BAD_HEADER_FIELD',\n          `readRecords: ${name} must be a whole record index, got ${value}.`,\n          'Record boundaries are the unit the file can be read in; a fractional index would decode samples from the middle of a record.',\n        );\n      }\n    }\n\n    const start = Math.max(0, options.startRecord ?? 0);\n    const end = Math.min(this.recordCount, options.endRecord ?? this.recordCount);\n    if (start >= end) return;\n\n    const { recordBytes } = this.header;\n    /*\n      Checked rather than handed to Buffer.alloc.\n\n      `chunkBytes: NaN` came back as `RangeError: The value of \"size\" is out of range` from\n      inside Node, with no mention of the option that caused it — while a fractional\n      `startRecord` two lines up gets a typed EdfError naming the field. Every other option\n      here is checked; this one reached the allocator.\n    */\n    const budget = options.chunkBytes ?? DEFAULT_CHUNK_BYTES;\n    if (!Number.isFinite(budget) || budget < 1) {\n      throw new EdfError(\n        'UNREADABLE',\n        `chunkBytes must be a positive number of bytes, got ${String(options.chunkBytes)}.`,\n        'It is a ceiling on how much of the file is held at once; one record is read whatever it says.',\n      );\n    }\n    /*\n      The budget is a ceiling, not an amount to reserve.\n\n      `Math.floor(budget / recordBytes)` is how many records would fit in it, and the buffer\n      was that many — whether or not the file had that many. A 848-byte fixture read with a\n      512 MB budget allocated 536,870,880 bytes for its two records, and every ordinary read\n      of a small file reserved the full 8 MB default. Nothing was wrong with the data; the\n      memory just had nothing to do with it.\n\n      Bounded by what is actually going to be read, so a batch of five hundred short\n      recordings costs five hundred short buffers rather than five hundred 8 MB ones.\n    */\n    const perChunk = Math.max(1, Math.min(Math.floor(budget / recordBytes), end - start));\n    const buffer = Buffer.alloc(perChunk * recordBytes);\n\n    for (let record = start; record < end; record += perChunk) {\n      const count = Math.min(perChunk, end - record);\n      const bytes = count * recordBytes;\n      const position = this.header.headerBytes + record * recordBytes;\n\n      const bytesRead = await readFully(this.#handle, buffer, 0, bytes, position);\n      if (bytesRead < bytes) {\n        // The file is shorter than its own size said. Quietly stopping here would\n        // hand back a conversion missing its tail with nothing to show for it.\n        throw new EdfError(\n          'UNREADABLE',\n          `Expected ${bytes} bytes of data at record ${record} but only ${bytesRead} were ` +\n            `available; the file appears to have changed size while it was being read.`,\n          'Make sure the recording is not still being written to, then try again.',\n        );\n      }\n\n      yield { firstRecordIndex: record, recordCount: count, data: buffer.subarray(0, bytes) };\n    }\n  }\n\n  /** Read one sample as its raw digital value. */\n  sampleAt(batch: RecordBatch, recordOffset: number, signal: EdfSignal, sampleIndex: number): number {\n    const position =\n      recordOffset * this.header.recordBytes +\n      signal.byteOffsetInRecord +\n      sampleIndex * this.header.bytesPerSample;\n\n    if (this.header.bytesPerSample === 3) {\n      // BDF stores 24-bit little-endian two's complement. Loading the three bytes\n      // into the top of a 32-bit word and shifting back down sign-extends them.\n      const data = batch.data;\n      return (\n        ((data[position] as number) << 8) |\n        ((data[position + 1] as number) << 16) |\n        ((data[position + 2] as number) << 24)\n      ) >> 8;\n    }\n    return readInt16LE(batch.data, position);\n  }\n\n  /** Byte offset of a signal's samples within a batch. */\n  offsetOf(batch: RecordBatch, recordOffset: number, signal: EdfSignal): number {\n    return recordOffset * this.header.recordBytes + signal.byteOffsetInRecord;\n  }\n\n  /** The annotation channel's raw bytes for one record in a batch. */\n  annotationBytes(batch: RecordBatch, recordOffset: number, signal: EdfSignal): Uint8Array {\n    const start = this.offsetOf(batch, recordOffset, signal);\n    return batch.data.subarray(start, start + signal.samplesPerRecord * this.header.bytesPerSample);\n  }\n\n  /**\n   * Read every EDF+ annotation in the file, plus the start time each record declares.\n   *\n   * Only the annotation channel is read, seeking straight to it inside each record\n   * rather than pulling whole records through memory. On a multi-gigabyte recording\n   * that is the difference between a few kilobytes of I/O and all of it.\n   *\n   * The whole file is always scanned, never just the records inside a requested\n   * window: writers are not obliged to store an annotation in the record its onset\n   * falls in, and some put every annotation in the first record. Reading only the\n   * window's records would drop those entirely.\n   */\n  /**\n   * Where this continuous recording begins, from the first record that says.\n   *\n   * A few records' worth of annotation bytes rather than the whole channel. A continuous\n   * recording's origin is the fraction of a second by which its first record follows the\n   * header's start time, and `--info` needs that to place a requested window — but it does\n   * not need the events, and finding one number by reading every record costs a seek per\n   * record across the whole file, which is the scan `--info` was deliberately spared.\n   *\n   * It reads on past record 0 because a conversion does. This used to stop there, so the\n   * moment one timekeeping TAL was unreadable the two disagreed: the conversion took the\n   * origin from record 1 and timed the file from 0.5s, while `--info` found nothing at\n   * record 0 and reported a recording starting at zero — the same file described two ways by\n   * one tool. Records are contiguous, so record `i` beginning at `t` puts the origin at\n   * `t - i * duration`, and any one of them settles it.\n   *\n   * The bound is what keeps this cheap: a file whose first `RECORDS_SEARCHED_FOR_ORIGIN`\n   * timekeeping entries are all unreadable reports an origin of zero here, and converting it\n   * raises ANNOTATION_DECODE_FAILED for every one of them.\n   *\n   * Returns null when there is nothing to read it from, in which case the origin is zero.\n   */\n  async readOrigin(): Promise<number | null> {\n    this.#assertOpen();\n\n    const channel = this.timekeepingSignal;\n    if (!channel || this.recordCount === 0) return null;\n\n    const { headerBytes, bytesPerSample, recordBytes, recordDuration } = this.header;\n    const buffer = Buffer.alloc(channel.samplesPerRecord * bytesPerSample);\n    if (buffer.length === 0) return null;\n\n    const searched = Math.min(this.recordCount, RECORDS_SEARCHED_FOR_ORIGIN);\n    for (let record = 0; record < searched; record++) {\n      const offset = headerBytes + record * recordBytes + channel.byteOffsetInRecord;\n      const bytesRead = await readFully(this.#handle, buffer, 0, buffer.length, offset);\n      if (bytesRead < buffer.length) return null;\n\n      const start = decodeRecordAnnotations(buffer, record).recordStart;\n      if (start !== null) return start - record * recordDuration;\n    }\n    return null;\n  }\n\n  async readAnnotations(): Promise<{\n    annotations: Annotation[];\n    recordStarts: (number | null)[];\n    malformed: number;\n    /** Unreadable TALs in first position, which carry timing rather than an event. */\n    malformedTimekeeping: number;\n  }> {\n    this.#assertOpen();\n\n    const annotations: Annotation[] = [];\n    const recordStarts: (number | null)[] = new Array<number | null>(this.recordCount).fill(null);\n    let malformed = 0;\n    let malformedTimekeeping = 0;\n\n    const channels = this.annotationSignals;\n    if (channels.length === 0) {\n      return { annotations, recordStarts, malformed, malformedTimekeeping };\n    }\n\n    const { headerBytes, recordBytes, bytesPerSample } = this.header;\n    const buffers = channels.map((c) => Buffer.alloc(c.samplesPerRecord * bytesPerSample));\n    const timekeeping = this.timekeepingSignal;\n\n    for (let record = 0; record < this.recordCount; record++) {\n      for (const [position, channel] of channels.entries()) {\n        const buffer = buffers[position];\n        if (!buffer || buffer.length === 0) continue;\n\n        const offset = headerBytes + record * recordBytes + channel.byteOffsetInRecord;\n        const bytesRead = await readFully(this.#handle, buffer, 0, buffer.length, offset);\n        if (bytesRead < buffer.length) {\n          throw changedWhileReading(record, buffer.length, bytesRead, 'annotation data');\n        }\n\n        const decoded = decodeRecordAnnotations(buffer, record);\n        // Only the timekeeping channel carries the record's start; see timekeepingSignal.\n        if (channel === timekeeping) recordStarts[record] = decoded.recordStart;\n        for (const annotation of decoded.annotations) annotations.push(annotation);\n        malformed += decoded.malformed;\n        malformedTimekeeping += decoded.malformedTimekeeping;\n      }\n    }\n\n    annotations.sort((a, b) => a.onset - b.onset || a.recordIndex - b.recordIndex);\n    return { annotations, recordStarts, malformed, malformedTimekeeping };\n  }\n\n  async close(): Promise<void> {\n    if (this.#closed) return;\n    this.#closed = true;\n    await this.#handle.close();\n  }\n\n  #assertOpen(): void {\n    if (this.#closed) throw new EdfError('UNREADABLE', 'This EDF file has already been closed.');\n  }\n}\n\nfunction describe(cause: unknown): string {\n  if (cause instanceof Error) {\n    const code = (cause as NodeJS.ErrnoException).code;\n    if (code === 'ENOENT') return 'no such file';\n    if (code === 'EACCES') return 'permission denied';\n    return cause.message;\n  }\n  return String(cause);\n}\n\n/**\n * The most `fs.read` will accept as a length.\n *\n * Node asserts on a length that does not fit in a signed 32-bit integer, and it asserts in\n * C++: `Assertion failed: args[3]->IsInt32()`, forty frames of native stack, SIGABRT. Not an\n * exception — nothing in JavaScript sees it, so no catch block and no `uncaughtException`\n * handler runs, and a library consumer's whole process goes down with it.\n *\n * A round gigabyte rather than the exact limit, so the loop below does whole even reads.\n */\nconst MAX_READ_BYTES = 1024 * 1024 * 1024;\n\n/** Fill a requested region unless EOF is reached; regular-file reads may legally be short. */\nasync function readFully(\n  handle: FileHandle,\n  buffer: Buffer,\n  offset: number,\n  length: number,\n  position: number,\n): Promise<number> {\n  let total = 0;\n  while (total < length) {\n    /*\n      Capped, because one data record can be larger than a single read may be.\n\n      A record is read in one call when it exceeds the chunk budget — there is nothing\n      smaller to divide it by, since a record is the unit the format is addressed in. EDF's\n      samples-per-record field is 8 characters, so eleven channels at 99,999,999 samples make\n      a record of 2.2 GB, and a long record duration at ordinary rates gets there too. That\n      went to `fs.read` as a single length over 2^31-1 and took the process out with a native\n      assertion rather than an error.\n\n      Looping was already how a short read is handled, so the cap costs one more iteration\n      per gigabyte and nothing else.\n    */\n    const want = Math.min(length - total, MAX_READ_BYTES);\n    const { bytesRead } = await handle.read(buffer, offset + total, want, position + total);\n    if (bytesRead === 0) break;\n    total += bytesRead;\n  }\n  return total;\n}\n\nfunction changedWhileReading(\n  record: number,\n  expected: number,\n  actual: number,\n  subject = 'data',\n): EdfError {\n  return new EdfError(\n    'UNREADABLE',\n    `Expected ${expected} bytes of ${subject} at record ${record} but only ${actual} were ` +\n      `available; the file appears to have changed size while it was being read.`,\n    'Make sure the recording is not still being written to, then try again.',\n  );\n}\n"]}
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* Chunked reader for EDF / EDF+ files.\n *\n * Data records are read in batches sized by a byte budget rather than all at once,\n * so peak memory stays flat regardless of how long the recording is. A 4 GB file\n * and a 4 MB file use the same working set.\n */\n\nimport { open, stat } from 'node:fs/promises';\nimport type { FileHandle } from 'node:fs/promises';\n\nimport { createHash } from 'node:crypto';\n\nimport { EdfError } from './errors.js';\nimport type { Diagnostic } from './errors.js';\nimport { FIXED_HEADER_BYTES, SIGNAL_HEADER_BYTES, parseHeader, peekSignalCount } from './header.js';\nimport type { EdfHeader, EdfSignal } from './header.js';\nimport { decodeRecordAnnotations } from './annotations.js';\nimport type { Annotation } from './annotations.js';\nimport { decodeLatin1, readInt16LE } from './bytes.js';\n\n/**\n * How far `readOrigin` looks for a record that states its own start time.\n *\n * Enough that one or two unreadable timekeeping entries at the top of a file cost nothing,\n * few enough that `--info` stays a header read rather than a scan.\n */\nconst RECORDS_SEARCHED_FOR_ORIGIN = 16;\n\n/** Default read budget per batch. Large enough to amortise syscalls, small enough to stay cheap. */\nexport const DEFAULT_CHUNK_BYTES = 8 * 1024 * 1024;\n\nexport interface RecordBatch {\n  /** Index of the first record in this batch, relative to the whole file. */\n  firstRecordIndex: number;\n  recordCount: number;\n  /**\n   * Raw record bytes, `recordCount * header.recordBytes` long.\n   *\n   * The buffer is reused between iterations. Copy anything you need to keep past\n   * the current loop turn.\n   */\n  data: Uint8Array;\n}\n\nexport interface ReadRecordsOptions {\n  /** First record to read, inclusive. Defaults to 0. */\n  startRecord?: number;\n  /** Last record to read, exclusive. Defaults to the file's record count. */\n  endRecord?: number;\n  chunkBytes?: number;\n}\n\nexport class EdfFile {\n  readonly path: string;\n  readonly fileSize: number;\n  /**\n   * Last-modified time when this file was opened, in milliseconds, for the same reason as\n   * `fileSize`.\n   *\n   * Kept as the raw number rather than a Date because `new Date(ms).getTime()` truncates to\n   * whole milliseconds: comparing that against a later `fstat`, which carries the\n   * filesystem's sub-millisecond precision, reported every undisturbed conversion as one\n   * whose input had changed underneath it.\n   */\n  readonly modifiedAtOpenMs: number;\n  readonly header: EdfHeader;\n  /** Records actually present in the file, which may differ from the header's claim. */\n  readonly recordCount: number;\n  readonly trailingBytes: number;\n  readonly diagnostics: Diagnostic[];\n\n  #handle: FileHandle;\n  #closed = false;\n  /** The last answer `changedSinceOpen` computed, so it survives the file being closed. */\n  #changed: boolean | null = null;\n\n  private constructor(init: {\n    path: string;\n    fileSize: number;\n    modifiedAtOpenMs: number;\n    header: EdfHeader;\n    recordCount: number;\n    trailingBytes: number;\n    diagnostics: Diagnostic[];\n    handle: FileHandle;\n  }) {\n    this.path = init.path;\n    this.fileSize = init.fileSize;\n    this.modifiedAtOpenMs = init.modifiedAtOpenMs;\n    this.header = init.header;\n    this.recordCount = init.recordCount;\n    this.trailingBytes = init.trailingBytes;\n    this.diagnostics = init.diagnostics;\n    this.#handle = init.handle;\n  }\n\n  /**\n   * SHA-256 of the bytes this conversion actually read.\n   *\n   * Hashed through the open descriptor, over exactly the `fileSize` bytes that were there\n   * when the file was opened — the same number every record count and window in the output\n   * was derived from. Re-opening the path to hash it afterwards described whatever was at\n   * that name by then: a recording still being written grew from 2,000 records to 3,000\n   * mid-conversion and metadata.json recorded `data_records: 2000` beside the checksum and\n   * byte count of the 3,000-record file, which is provenance for bytes nobody converted.\n   * Replacing the file at that path did the same thing more completely.\n   */\n  async sha256(): Promise<string> {\n    this.#assertOpen();\n    const hash = createHash('sha256');\n    const buffer = Buffer.alloc(Math.min(this.fileSize, 4 * 1024 * 1024) || 1);\n    for (let at = 0; at < this.fileSize; ) {\n      const want = Math.min(buffer.length, this.fileSize - at);\n      const { bytesRead } = await this.#handle.read(buffer, 0, want, at);\n      if (bytesRead <= 0) {\n        throw new EdfError(\n          'UNREADABLE',\n          `Expected ${this.fileSize} bytes to checksum but the file ended at ${at}; ` +\n            `it appears to have changed size while it was being read.`,\n          'Make sure the recording is not still being written to, then try again.',\n        );\n      }\n      hash.update(buffer.subarray(0, bytesRead));\n      at += bytesRead;\n    }\n    return hash.digest('hex');\n  }\n\n  /**\n   * Whether the file has changed since it was opened, by size or by modification time.\n   *\n   * Checked through the descriptor, so it answers for the bytes that were read rather than\n   * for whatever now answers to the same name. A recording still being written is the\n   * ordinary cause, and the conversion is still correct for the data it saw — it is the\n   * claim that the output describes the file as it now stands that stops being true.\n   */\n  async changedSinceOpen(): Promise<boolean> {\n    /*\n      A closed file remembers its last answer rather than inventing a new one.\n\n      Returning false once closed asserted \"it did not change\", which is not something a\n      closed descriptor can know — and `convert()` closes the file before it returns, so\n      `result.file.changedSinceOpen()` denied the very change the INPUT_CHANGED diagnostic\n      in the same result object had just reported. One object, two answers.\n\n      `convert()` always asks before closing, so the cached answer is the true one. A caller\n      who closed the file without ever asking gets an error, which is the same treatment\n      every other method on a closed file gets.\n    */\n    if (this.#closed) {\n      if (this.#changed !== null) return this.#changed;\n      throw new EdfError(\n        'UNREADABLE',\n        `\"${this.path}\" is closed, and whether it changed while it was open was never checked.`,\n        'Ask before closing the file. A ConvertResult carries the answer already, since ' +\n          'convert() checks it on the way out.',\n      );\n    }\n    const now = await this.#handle.stat().catch(() => null);\n    if (now === null) return this.#changed ?? false;\n    this.#changed = now.size !== this.fileSize || now.mtimeMs !== this.modifiedAtOpenMs;\n    return this.#changed;\n  }\n\n  static async open(path: string): Promise<EdfFile> {\n    const info = await stat(path).catch((cause: unknown) => {\n      throw new EdfError('UNREADABLE', `Cannot read \"${path}\": ${describe(cause)}`);\n    });\n    if (info.isDirectory()) {\n      throw new EdfError('UNREADABLE', `\"${path}\" is a directory, not an EDF file.`);\n    }\n    if (!info.isFile()) {\n      throw new EdfError('UNREADABLE', `\"${path}\" is not a regular file.`);\n    }\n\n    const handle = await open(path, 'r');\n    try {\n      const fixed = Buffer.alloc(Math.min(FIXED_HEADER_BYTES, info.size));\n      if (fixed.length > 0) {\n        const bytesRead = await readFully(handle, fixed, 0, fixed.length, 0);\n        if (bytesRead < fixed.length) throw changedWhileReading(0, fixed.length, bytesRead);\n      }\n\n      // The signal count decides how much more header there is to read. Read by the header\n      // parser itself, so the two cannot disagree about which files are readable: this used\n      // to have its own Number(), which tolerated the NUL padding sloppy writers emit but\n      // not the comma decimal separator that COMMA_DECIMAL exists to accept.\n      let headerBuffer = fixed;\n      if (fixed.length === FIXED_HEADER_BYTES) {\n        const ns = peekSignalCount(fixed);\n        if (ns !== null) {\n          const total = FIXED_HEADER_BYTES + ns * SIGNAL_HEADER_BYTES;\n          if (total <= info.size) {\n            headerBuffer = Buffer.alloc(total);\n            const bytesRead = await readFully(handle, headerBuffer, 0, total, 0);\n            if (bytesRead < total) throw changedWhileReading(0, total, bytesRead);\n          }\n        }\n      }\n\n      const { header, recordCount, trailingBytes, diagnostics } = parseHeader(\n        headerBuffer,\n        info.size,\n      );\n\n      return new EdfFile({\n        path,\n        fileSize: info.size,\n        modifiedAtOpenMs: info.mtimeMs,\n        header,\n        recordCount,\n        trailingBytes,\n        diagnostics,\n        handle,\n      });\n    } catch (error) {\n      await handle.close().catch(() => {});\n      throw error;\n    }\n  }\n\n  /** Signal channels, excluding the EDF+ annotations channel. */\n  get dataSignals(): EdfSignal[] {\n    return this.header.signals.filter((s) => !s.isAnnotations);\n  }\n\n  /**\n   * The annotation channel a record's start time is read from.\n   *\n   * EDF+ puts the timekeeping TAL first in the first annotation channel, and this was read as\n   * `annotationSignals[0]` — the first one declared, whether or not it can hold anything. A\n   * writer that declares an annotation channel and gives it zero samples per record leaves a\n   * slot of zero bytes, so nothing was read from it, and the timekeeping in the channel after\n   * it went unread: a three-record EDF+D reported \"3 of 3 data records carry no readable\n   * timekeeping annotation\" about three that were perfectly readable, and timed the file from\n   * zero.\n   *\n   * A channel with no room carries nothing, so it is not the one the TAL is in.\n   */\n  get timekeepingSignal(): EdfSignal | undefined {\n    return this.annotationSignals.find((signal) => signal.samplesPerRecord > 0);\n  }\n\n  get annotationSignals(): EdfSignal[] {\n    return this.header.signals.filter((s) => s.isAnnotations);\n  }\n\n  /** Total recording duration in seconds, based on records actually present. */\n  get durationSeconds(): number {\n    return this.recordCount * this.header.recordDuration;\n  }\n\n  /** Read a half-open range of records in batches. */\n  async *readRecords(options: ReadRecordsOptions = {}): AsyncGenerator<RecordBatch> {\n    this.#assertOpen();\n\n    /*\n      Record bounds have to be whole records.\n\n      A fractional `startRecord` was carried straight into `position = headerBytes +\n      record * recordBytes`, so reading from 1.5 began half a record in and every sample\n      after it was decoded from the wrong offset: on the two-channel test fixture it\n      returned channel 2's values under channel 1's signal, with no error. Clamping\n      silently would be no better, since a caller asking for record 1.5 has a bug the\n      library should name rather than paper over.\n    */\n    for (const [name, value] of [\n      ['startRecord', options.startRecord],\n      ['endRecord', options.endRecord],\n    ] as const) {\n      if (value !== undefined && !Number.isInteger(value)) {\n        throw new EdfError(\n          'BAD_HEADER_FIELD',\n          `readRecords: ${name} must be a whole record index, got ${value}.`,\n          'Record boundaries are the unit the file can be read in; a fractional index would decode samples from the middle of a record.',\n        );\n      }\n    }\n\n    const start = Math.max(0, options.startRecord ?? 0);\n    const end = Math.min(this.recordCount, options.endRecord ?? this.recordCount);\n    if (start >= end) return;\n\n    const { recordBytes } = this.header;\n    /*\n      Checked rather than handed to Buffer.alloc.\n\n      `chunkBytes: NaN` came back as `RangeError: The value of \"size\" is out of range` from\n      inside Node, with no mention of the option that caused it — while a fractional\n      `startRecord` two lines up gets a typed EdfError naming the field. Every other option\n      here is checked; this one reached the allocator.\n    */\n    const budget = options.chunkBytes ?? DEFAULT_CHUNK_BYTES;\n    if (!Number.isFinite(budget) || budget < 1) {\n      throw new EdfError(\n        'UNREADABLE',\n        `chunkBytes must be a positive number of bytes, got ${String(options.chunkBytes)}.`,\n        'It is a ceiling on how much of the file is held at once; one record is read whatever it says.',\n      );\n    }\n    /*\n      The budget is a ceiling, not an amount to reserve.\n\n      `Math.floor(budget / recordBytes)` is how many records would fit in it, and the buffer\n      was that many — whether or not the file had that many. A 848-byte fixture read with a\n      512 MB budget allocated 536,870,880 bytes for its two records, and every ordinary read\n      of a small file reserved the full 8 MB default. Nothing was wrong with the data; the\n      memory just had nothing to do with it.\n\n      Bounded by what is actually going to be read, so a batch of five hundred short\n      recordings costs five hundred short buffers rather than five hundred 8 MB ones.\n    */\n    const perChunk = Math.max(1, Math.min(Math.floor(budget / recordBytes), end - start));\n    const buffer = Buffer.alloc(perChunk * recordBytes);\n\n    for (let record = start; record < end; record += perChunk) {\n      const count = Math.min(perChunk, end - record);\n      const bytes = count * recordBytes;\n      const position = this.header.headerBytes + record * recordBytes;\n\n      const bytesRead = await readFully(this.#handle, buffer, 0, bytes, position);\n      if (bytesRead < bytes) {\n        // The file is shorter than its own size said. Quietly stopping here would\n        // hand back a conversion missing its tail with nothing to show for it.\n        throw new EdfError(\n          'UNREADABLE',\n          `Expected ${bytes} bytes of data at record ${record} but only ${bytesRead} were ` +\n            `available; the file appears to have changed size while it was being read.`,\n          'Make sure the recording is not still being written to, then try again.',\n        );\n      }\n\n      yield { firstRecordIndex: record, recordCount: count, data: buffer.subarray(0, bytes) };\n    }\n  }\n\n  /** Read one sample as its raw digital value. */\n  sampleAt(batch: RecordBatch, recordOffset: number, signal: EdfSignal, sampleIndex: number): number {\n    const position =\n      recordOffset * this.header.recordBytes +\n      signal.byteOffsetInRecord +\n      sampleIndex * this.header.bytesPerSample;\n\n    if (this.header.bytesPerSample === 3) {\n      // BDF stores 24-bit little-endian two's complement. Loading the three bytes\n      // into the top of a 32-bit word and shifting back down sign-extends them.\n      const data = batch.data;\n      return (\n        ((data[position] as number) << 8) |\n        ((data[position + 1] as number) << 16) |\n        ((data[position + 2] as number) << 24)\n      ) >> 8;\n    }\n    return readInt16LE(batch.data, position);\n  }\n\n  /** Byte offset of a signal's samples within a batch. */\n  offsetOf(batch: RecordBatch, recordOffset: number, signal: EdfSignal): number {\n    return recordOffset * this.header.recordBytes + signal.byteOffsetInRecord;\n  }\n\n  /** The annotation channel's raw bytes for one record in a batch. */\n  annotationBytes(batch: RecordBatch, recordOffset: number, signal: EdfSignal): Uint8Array {\n    const start = this.offsetOf(batch, recordOffset, signal);\n    return batch.data.subarray(start, start + signal.samplesPerRecord * this.header.bytesPerSample);\n  }\n\n  /**\n   * Read every EDF+ annotation in the file, plus the start time each record declares.\n   *\n   * Only the annotation channel is read, seeking straight to it inside each record\n   * rather than pulling whole records through memory. On a multi-gigabyte recording\n   * that is the difference between a few kilobytes of I/O and all of it.\n   *\n   * The whole file is always scanned, never just the records inside a requested\n   * window: writers are not obliged to store an annotation in the record its onset\n   * falls in, and some put every annotation in the first record. Reading only the\n   * window's records would drop those entirely.\n   */\n  /**\n   * Where this continuous recording begins, from the first record that says.\n   *\n   * A few records' worth of annotation bytes rather than the whole channel. A continuous\n   * recording's origin is the fraction of a second by which its first record follows the\n   * header's start time, and `--info` needs that to place a requested window — but it does\n   * not need the events, and finding one number by reading every record costs a seek per\n   * record across the whole file, which is the scan `--info` was deliberately spared.\n   *\n   * It reads on past record 0 because a conversion does. This used to stop there, so the\n   * moment one timekeeping TAL was unreadable the two disagreed: the conversion took the\n   * origin from record 1 and timed the file from 0.5s, while `--info` found nothing at\n   * record 0 and reported a recording starting at zero — the same file described two ways by\n   * one tool. Records are contiguous, so record `i` beginning at `t` puts the origin at\n   * `t - i * duration`, and any one of them settles it.\n   *\n   * The bound is what keeps this cheap: a file whose first `RECORDS_SEARCHED_FOR_ORIGIN`\n   * timekeeping entries are all unreadable reports an origin of zero here, and converting it\n   * raises ANNOTATION_DECODE_FAILED for every one of them.\n   *\n   * Returns null when there is nothing to read it from, in which case the origin is zero.\n   */\n  async readOrigin(): Promise<number | null> {\n    this.#assertOpen();\n\n    const channel = this.timekeepingSignal;\n    if (!channel || this.recordCount === 0) return null;\n\n    const { headerBytes, bytesPerSample, recordBytes, recordDuration } = this.header;\n    const buffer = Buffer.alloc(channel.samplesPerRecord * bytesPerSample);\n    if (buffer.length === 0) return null;\n\n    const searched = Math.min(this.recordCount, RECORDS_SEARCHED_FOR_ORIGIN);\n    for (let record = 0; record < searched; record++) {\n      const offset = headerBytes + record * recordBytes + channel.byteOffsetInRecord;\n      const bytesRead = await readFully(this.#handle, buffer, 0, buffer.length, offset);\n      if (bytesRead < buffer.length) return null;\n\n      const start = decodeRecordAnnotations(buffer, record).recordStart;\n      if (start !== null) return start - record * recordDuration;\n    }\n    return null;\n  }\n\n  async readAnnotations(): Promise<{\n    annotations: Annotation[];\n    recordStarts: (number | null)[];\n    malformed: number;\n    /** Unreadable TALs in first position, which carry timing rather than an event. */\n    malformedTimekeeping: number;\n  }> {\n    this.#assertOpen();\n\n    const annotations: Annotation[] = [];\n    const recordStarts: (number | null)[] = new Array<number | null>(this.recordCount).fill(null);\n    let malformed = 0;\n    let malformedTimekeeping = 0;\n\n    const channels = this.annotationSignals;\n    if (channels.length === 0) {\n      return { annotations, recordStarts, malformed, malformedTimekeeping };\n    }\n\n    const { headerBytes, recordBytes, bytesPerSample } = this.header;\n    const buffers = channels.map((c) => Buffer.alloc(c.samplesPerRecord * bytesPerSample));\n    const timekeeping = this.timekeepingSignal;\n\n    for (let record = 0; record < this.recordCount; record++) {\n      for (const [position, channel] of channels.entries()) {\n        const buffer = buffers[position];\n        if (!buffer || buffer.length === 0) continue;\n\n        const offset = headerBytes + record * recordBytes + channel.byteOffsetInRecord;\n        const bytesRead = await readFully(this.#handle, buffer, 0, buffer.length, offset);\n        if (bytesRead < buffer.length) {\n          throw changedWhileReading(record, buffer.length, bytesRead, 'annotation data');\n        }\n\n        // Only the timekeeping channel carries the record's start; see timekeepingSignal.\n        const decoded = decodeRecordAnnotations(buffer, record, channel === timekeeping);\n        if (channel === timekeeping) recordStarts[record] = decoded.recordStart;\n        for (const annotation of decoded.annotations) annotations.push(annotation);\n        malformed += decoded.malformed;\n        malformedTimekeeping += decoded.malformedTimekeeping;\n      }\n    }\n\n    annotations.sort((a, b) => a.onset - b.onset || a.recordIndex - b.recordIndex);\n    return { annotations, recordStarts, malformed, malformedTimekeeping };\n  }\n\n  async close(): Promise<void> {\n    if (this.#closed) return;\n    this.#closed = true;\n    await this.#handle.close();\n  }\n\n  #assertOpen(): void {\n    if (this.#closed) throw new EdfError('UNREADABLE', 'This EDF file has already been closed.');\n  }\n}\n\nfunction describe(cause: unknown): string {\n  if (cause instanceof Error) {\n    const code = (cause as NodeJS.ErrnoException).code;\n    if (code === 'ENOENT') return 'no such file';\n    if (code === 'EACCES') return 'permission denied';\n    return cause.message;\n  }\n  return String(cause);\n}\n\n/**\n * The most `fs.read` will accept as a length.\n *\n * Node asserts on a length that does not fit in a signed 32-bit integer, and it asserts in\n * C++: `Assertion failed: args[3]->IsInt32()`, forty frames of native stack, SIGABRT. Not an\n * exception — nothing in JavaScript sees it, so no catch block and no `uncaughtException`\n * handler runs, and a library consumer's whole process goes down with it.\n *\n * A round gigabyte rather than the exact limit, so the loop below does whole even reads.\n */\nconst MAX_READ_BYTES = 1024 * 1024 * 1024;\n\n/** Fill a requested region unless EOF is reached; regular-file reads may legally be short. */\nasync function readFully(\n  handle: FileHandle,\n  buffer: Buffer,\n  offset: number,\n  length: number,\n  position: number,\n): Promise<number> {\n  let total = 0;\n  while (total < length) {\n    /*\n      Capped, because one data record can be larger than a single read may be.\n\n      A record is read in one call when it exceeds the chunk budget — there is nothing\n      smaller to divide it by, since a record is the unit the format is addressed in. EDF's\n      samples-per-record field is 8 characters, so eleven channels at 99,999,999 samples make\n      a record of 2.2 GB, and a long record duration at ordinary rates gets there too. That\n      went to `fs.read` as a single length over 2^31-1 and took the process out with a native\n      assertion rather than an error.\n\n      Looping was already how a short read is handled, so the cap costs one more iteration\n      per gigabyte and nothing else.\n    */\n    const want = Math.min(length - total, MAX_READ_BYTES);\n    const { bytesRead } = await handle.read(buffer, offset + total, want, position + total);\n    if (bytesRead === 0) break;\n    total += bytesRead;\n  }\n  return total;\n}\n\nfunction changedWhileReading(\n  record: number,\n  expected: number,\n  actual: number,\n  subject = 'data',\n): EdfError {\n  return new EdfError(\n    'UNREADABLE',\n    `Expected ${expected} bytes of ${subject} at record ${record} but only ${actual} were ` +\n      `available; the file appears to have changed size while it was being read.`,\n    'Make sure the recording is not still being written to, then try again.',\n  );\n}\n"]}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.5.38",
+  "version": "0.5.39",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",