npm - edf2csv - Versions diffs - 0.4.33 → 0.4.35 - Mend

edf2csv 0.4.33 → 0.4.35

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (7) hide show

package/dist/convert/run.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAanD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,kBAAkB,GAClB,qBAAqB,GACrB,cAAc,CAAC;AAEnB;;;;;;;;;GASG;AACH,eAAO,MAAM,iBAAiB,EAAE,WAAW,CAAC,mBAAmB,CAAoC,CAAC;AAEpG,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B;;;;;;OAMG;IACH,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAYD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,~~CAsJrG~~;AAsDD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}
1	+ {"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAanD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,kBAAkB,GAClB,qBAAqB,GACrB,cAAc,CAAC;AAEnB;;;;;;;;;GASG;AACH,eAAO,MAAM,iBAAiB,EAAE,WAAW,CAAC,mBAAmB,CAAoC,CAAC;AAEpG,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B;;;;;;OAMG;IACH,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAYD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CAyJrG;AAsDD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}

package/dist/convert/run.js CHANGED Viewed

@@ -95,6 +95,8 @@ export async function convert(inputPath, options = {}) {
                     `(${listed(formatRates(plan.groups.map((g) => g.rate)).map((r) => `${r} Hz`))}).`, 'Narrow it to one rate with --channels, or convert to a directory instead.');
             }
             const written = await writeSignalFiles(file, plan, null, timing.starts, options);
+            if (rowsIn(written) === 0)
+                plan.diagnostics.push(emptyWindow(plan.range, file.recordCount));
             if (await file.changedSinceOpen())
                 plan.diagnostics.push(inputChanged(false));
             return {
@@ -112,7 +114,10 @@ export async function convert(inputPath, options = {}) {
         await prepareOutputDir(outputDir, options.force === true);
         const written = [];
         if (plan.writeSignals && plan.groups.length > 0) {
-            written.push(...(await writeSignalFiles(file, plan, outputDir, timing.starts, options)));
+            const signals = await writeSignalFiles(file, plan, outputDir, timing.starts, options);
+            written.push(...signals);
+            if (rowsIn(signals) === 0)
+                plan.diagnostics.push(emptyWindow(plan.range, file.recordCount));
         }
         if (options.annotationsOnly === true && file.annotationSignals.length === 0) {
             plan.diagnostics.push({
@@ -564,6 +569,45 @@ async function writeAnnotationsCsv(outputDir, annotations, window, gzip) {
     await writeOutputFile(outputDir, name, lines.join('\n') + '\n', gzip);
     return { name, rows: inWindow.length };
 }
+/** Data rows across every signal table, so "nothing was written" is one question. */
+function rowsIn(written) {
+    return written.reduce((total, file) => total + file.rows, 0);
+}
+/**
+ * Raised when the conversion had signal tables to fill and put no data rows in any of them.
+ *
+ * A window can land where there are no samples without being past the end of the recording:
+ * between the last sample and the nominal end of the last record, or — on a discontinuous
+ * file — inside a gap. `--start 2 --end 10` on a recording whose records sit at 0s, 1s and
+ * 10s asks for eight seconds that contain no data at all.
+ *
+ * What came out was a signals.csv holding its header and nothing else, exit 0, no warning,
+ * and `--strict` passing. The closing summary does say "signals.csv 0 rows" and --json
+ * carries `rows: 0`, so it was not quite invisible — but a header-only file is exactly what
+ * a successful extraction of an empty range looks like, and everywhere else that a request
+ * produces nothing this tool says so: a --channels term matching nothing is an error, and
+ * --annotations-only on a file with no events raises NO_ANNOTATIONS. A warning rather than
+ * an error because a batch of five hundred recordings should not stop for one whose gap
+ * happens to line up with the window; --strict turns it into a failure for those who want
+ * that.
+ */
+function emptyWindow(range, recordCount) {
+    const asked = !range.isWholeRecording;
+    return {
+        code: 'EMPTY_WINDOW',
+        severity: 'warning',
+        message: asked
+            ? `No samples fall inside the requested window (${fixed(range.startSeconds, 3)}s to ` +
+                `${fixed(range.endSeconds, 3)}s), so the signal files hold their headers and no data.`
+            : `This recording's ${recordCount} data records carry no samples in range, so the ` +
+                `signal files hold their headers and no data.`,
+        hint: asked
+            ? 'The window is inside the recording but lands where there is no data — past the ' +
+                'last sample, or inside a gap in a discontinuous file. Run with --info to see where ' +
+                'the records actually sit.'
+            : 'Run with --info to see what the header declares.',
+    };
+}
 /** Raised when the input moved while it was being read. See where it is pushed. */
 function inputChanged(hadChecksum) {
     return {

package/dist/convert/run.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/edf/errors.d.ts CHANGED Viewed

@@ -6,7 +6,7 @@
  * we can continue, but the user needs to know something about their data that
  * they would not otherwise see.
  */
-export type DiagnosticCode = 'MIXED_SAMPLING_RATES' | 'DISCONTINUOUS' | 'RECORD_COUNT_UNKNOWN' | 'RECORD_COUNT_MISMATCH' | 'TRAILING_BYTES' | 'DEGENERATE_DIGITAL_RANGE' | 'DEGENERATE_PHYSICAL_RANGE' | 'UNUSABLE_PHYSICAL_RANGE' | 'INVERTED_PHYSICAL_RANGE' | 'DUPLICATE_LABEL' | 'EMPTY_LABEL' | 'NONSTANDARD_UNIT' | 'NO_ANNOTATIONS' | 'ANNOTATION_DECODE_FAILED' | 'COMMA_DECIMAL' | 'LARGE_OUTPUT' | 'NO_SIGNAL_CHANNELS' | 'NO_SAMPLES' | 'STALE_OUTPUT' | 'INPUT_CHANGED' | 'HEADER_BYTES_MISMATCH' | 'NONPRINTABLE_LABEL';
+export type DiagnosticCode = 'MIXED_SAMPLING_RATES' | 'DISCONTINUOUS' | 'RECORD_COUNT_UNKNOWN' | 'RECORD_COUNT_MISMATCH' | 'TRAILING_BYTES' | 'DEGENERATE_DIGITAL_RANGE' | 'DEGENERATE_PHYSICAL_RANGE' | 'UNUSABLE_PHYSICAL_RANGE' | 'INVERTED_PHYSICAL_RANGE' | 'DUPLICATE_LABEL' | 'EMPTY_LABEL' | 'NONSTANDARD_UNIT' | 'NO_ANNOTATIONS' | 'ANNOTATION_DECODE_FAILED' | 'COMMA_DECIMAL' | 'LARGE_OUTPUT' | 'NO_SIGNAL_CHANNELS' | 'NO_SAMPLES' | 'STALE_OUTPUT' | 'INPUT_CHANGED' | 'EMPTY_WINDOW' | 'HEADER_BYTES_MISMATCH' | 'NONPRINTABLE_LABEL';
 export interface Diagnostic {
     code: DiagnosticCode;
     severity: 'warning' | 'info';

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	@@ -1 +1 @@
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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.4.33",
+  "version": "0.4.35",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",