edf2csv 0.4.30 → 0.4.32

package/README.md

@@ -95,12 +95,16 @@ before you rely on the output.
 
 ## Accuracy
 
-Values are checked against [pyEDFlib](https://github.com/holgern/pyedflib). Across
-the recordings used for testing, 129,536 sample values were bit-for-bit identical:
-not equal to within a tolerance, but the same 64 bits.
+Values are checked against [pyEDFlib](https://github.com/holgern/pyedflib), the Python
+binding around the C library written by the author of the EDF+ specification. Across the 75
+generated recordings, 16,943 sample values were bit-for-bit identical: not equal to within a
+tolerance, but the same 64 bits.
+
+That check needs Python, so it is a separate command from the test suite:
 
 ```bash
-npm test
+pip install pyedflib
+npm run crossvalidate
 ```
 
 ## When to use something else

package/dist/convert/run.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAanD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,kBAAkB,GAClB,qBAAqB,GACrB,cAAc,CAAC;AAEnB;;;;;;;;;GASG;AACH,eAAO,MAAM,iBAAiB,EAAE,WAAW,CAAC,mBAAmB,CAAoC,CAAC;AAEpG,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B;;;;;;OAMG;IACH,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAYD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CA+GrG;AAsDD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}
+{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAanD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,kBAAkB,GAClB,qBAAqB,GACrB,cAAc,CAAC;AAEnB;;;;;;;;;GASG;AACH,eAAO,MAAM,iBAAiB,EAAE,WAAW,CAAC,mBAAmB,CAAoC,CAAC;AAEpG,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B;;;;;;OAMG;IACH,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAYD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CAsJrG;AAsDD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}

package/dist/convert/run.js

@@ -48,6 +48,22 @@ export async function convert(inputPath, options = {}) {
     const startedAt = Date.now();
     const file = await EdfFile.open(inputPath);
     try {
+        /*
+          Hashed before a record is read, and only published if the file held still.
+    
+          A checksum taken afterwards cannot be trusted whichever descriptor it goes through. A
+          file overwritten in place keeps its inode, so the open handle sees the new bytes too,
+          and the old ones are simply gone — there is nowhere left to read what was converted.
+          Taking it first at least means the hash describes the file the header was read from.
+    
+          What makes it a guarantee rather than a hope is the check at the end: if size or
+          modification time moved at any point, the hash is dropped and the run says why. So
+          `sha256` present means the file demonstrably did not change while it was read, and a
+          recording still being written gets a null and a warning instead of a plausible hash of
+          the wrong bytes. (A change reverted within the same modification timestamp would slip
+          through; nothing short of copying the input first can close that.)
+        */
+        const checksumAtOpen = options.checksum === true ? await file.sha256() : null;
         // One pass over the annotation channel supplies everything annotation-related:
         // where each record sits in time, and the full event list. It reads the whole
         // file even when a window was requested, because an annotation inside the window
@@ -79,6 +95,8 @@ export async function convert(inputPath, options = {}) {
                     `(${listed(formatRates(plan.groups.map((g) => g.rate)).map((r) => `${r} Hz`))}).`, 'Narrow it to one rate with --channels, or convert to a directory instead.');
             }
             const written = await writeSignalFiles(file, plan, null, timing.starts, options);
+            if (await file.changedSinceOpen())
+                plan.diagnostics.push(inputChanged(false));
             return {
                 outputDir: '-',
                 files: written,
@@ -112,7 +130,19 @@ export async function convert(inputPath, options = {}) {
             annotationsWritten = result.rows;
         }
         written.push(await writeChannelsCsv(outputDir, file, plan, options.gzip === true));
-        await writeMetadata(outputDir, inputPath, file, plan, written, annotationsWritten, options);
+        /*
+          The file moved under the conversion. Said out loud, because nothing else shows it.
+    
+          The CSVs are still correct for the records that were read, and metadata.json still
+          describes the file as it was opened — so the record is consistent with the output
+          whatever happens here. What stops being true is that the checksum describes the bytes
+          that were converted, since an in-place overwrite leaves nowhere to read them from. It
+          is dropped rather than guessed at.
+        */
+        const changed = await file.changedSinceOpen();
+        if (changed)
+            plan.diagnostics.push(inputChanged(options.checksum === true));
+        await writeMetadata(outputDir, inputPath, file, plan, written, annotationsWritten, changed ? null : checksumAtOpen);
         const stale = await findStaleOutput(outputDir, written);
         return {
             outputDir,
@@ -534,16 +564,45 @@ async function writeAnnotationsCsv(outputDir, annotations, window, gzip) {
     await writeOutputFile(outputDir, name, lines.join('\n') + '\n', gzip);
     return { name, rows: inWindow.length };
 }
-async function writeMetadata(outputDir, inputPath, file, plan, written, annotationCount, options) {
+/** Raised when the input moved while it was being read. See where it is pushed. */
+function inputChanged(hadChecksum) {
+    return {
+        code: 'INPUT_CHANGED',
+        severity: 'warning',
+        message: 'The input changed while it was being converted, so this output covers the file as ' +
+            'it was when the conversion started, not as it is now.',
+        hint: hadChecksum
+            ? 'No checksum was recorded: the bytes that were converted are no longer there to ' +
+                'hash. Convert again once the recording is finished.'
+            : 'Convert again once the recording is finished to pick up the rest.',
+    };
+}
+async function writeMetadata(outputDir, inputPath, file, plan, written, annotationCount, 
+/** Hash of the bytes that were converted, or null when it could not be vouched for. */
+checksum) {
     const { header } = file;
-    const info = await stat(inputPath).catch(() => null);
+    /*
+      The file as it was when it was opened, not as it is now.
+  
+      Both of these used to come from re-opening the path once the CSVs were written, which
+      describes whatever answers to that name by then rather than what was converted. A
+      recording still being written grew from 2,000 records to 3,000 mid-conversion and
+      metadata.json recorded `data_records: 2000` — correct, the CSV holds 2,000 — beside the
+      byte count and SHA-256 of the 3,000-record file. The two halves of one provenance record
+      described two different files, and the checksum covered bytes nobody had converted.
+      Replacing the file at that path did the same thing more thoroughly.
+  
+      `file.fileSize` is the number every record count and window in this output was derived
+      from, and the hash is taken over exactly those bytes through the descriptor already open
+      on them, so the record describes one file throughout.
+    */
     const metadata = {
         tool: { name: 'edf2csv', version: TOOL_VERSION },
         source: {
             path: path.resolve(inputPath),
-            bytes: info?.size ?? null,
-            modified: info ? new Date(info.mtimeMs).toISOString() : null,
-            sha256: options.checksum === true ? await sha256(inputPath) : null,
+            bytes: file.fileSize,
+            modified: new Date(file.modifiedAtOpenMs).toISOString(),
+            sha256: checksum,
         },
         recording: {
             format: describeFormat(header),
@@ -584,9 +643,4 @@ async function writeMetadata(outputDir, inputPath, file, plan, written, annotati
     };
     await writeOutputFile(outputDir, 'metadata.json', JSON.stringify(metadata, null, 2) + '\n');
 }
-async function sha256(filePath) {
-    const hash = createHash('sha256');
-    await pipeline(createReadStream(filePath), hash);
-    return hash.digest('hex');
-}
 //# sourceMappingURL=run.js.map

package/dist/convert/run.js.map

@@ -1 +1 @@
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package/dist/edf/errors.d.ts

@@ -6,7 +6,7 @@
  * we can continue, but the user needs to know something about their data that
  * they would not otherwise see.
  */
-export type DiagnosticCode = 'MIXED_SAMPLING_RATES' | 'DISCONTINUOUS' | 'RECORD_COUNT_UNKNOWN' | 'RECORD_COUNT_MISMATCH' | 'TRAILING_BYTES' | 'DEGENERATE_DIGITAL_RANGE' | 'DEGENERATE_PHYSICAL_RANGE' | 'UNUSABLE_PHYSICAL_RANGE' | 'INVERTED_PHYSICAL_RANGE' | 'DUPLICATE_LABEL' | 'EMPTY_LABEL' | 'NONSTANDARD_UNIT' | 'NO_ANNOTATIONS' | 'ANNOTATION_DECODE_FAILED' | 'COMMA_DECIMAL' | 'LARGE_OUTPUT' | 'NO_SIGNAL_CHANNELS' | 'NO_SAMPLES' | 'STALE_OUTPUT' | 'HEADER_BYTES_MISMATCH' | 'NONPRINTABLE_LABEL';
+export type DiagnosticCode = 'MIXED_SAMPLING_RATES' | 'DISCONTINUOUS' | 'RECORD_COUNT_UNKNOWN' | 'RECORD_COUNT_MISMATCH' | 'TRAILING_BYTES' | 'DEGENERATE_DIGITAL_RANGE' | 'DEGENERATE_PHYSICAL_RANGE' | 'UNUSABLE_PHYSICAL_RANGE' | 'INVERTED_PHYSICAL_RANGE' | 'DUPLICATE_LABEL' | 'EMPTY_LABEL' | 'NONSTANDARD_UNIT' | 'NO_ANNOTATIONS' | 'ANNOTATION_DECODE_FAILED' | 'COMMA_DECIMAL' | 'LARGE_OUTPUT' | 'NO_SIGNAL_CHANNELS' | 'NO_SAMPLES' | 'STALE_OUTPUT' | 'INPUT_CHANGED' | 'HEADER_BYTES_MISMATCH' | 'NONPRINTABLE_LABEL';
 export interface Diagnostic {
     code: DiagnosticCode;
     severity: 'warning' | 'info';

package/dist/edf/errors.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"errors.d.ts","sourceRoot":"","sources":["../../src/edf/errors.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,MAAM,MAAM,cAAc,GACtB,sBAAsB,GACtB,eAAe,GACf,sBAAsB,GACtB,uBAAuB,GACvB,gBAAgB,GAChB,0BAA0B,GAC1B,2BAA2B,GAC3B,yBAAyB,GACzB,yBAAyB,GACzB,iBAAiB,GACjB,aAAa,GACb,kBAAkB,GAClB,gBAAgB,GAChB,0BAA0B,GAC1B,eAAe,GACf,cAAc,GACd,oBAAoB,GACpB,YAAY,GACZ,cAAc,GACd,uBAAuB,GACvB,oBAAoB,CAAC;AAEzB,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,cAAc,CAAC;IACrB,QAAQ,EAAE,SAAS,GAAG,MAAM,CAAC;IAC7B,OAAO,EAAE,MAAM,CAAC;IAChB,kFAAkF;IAClF,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,MAAM,MAAM,YAAY,GACpB,gBAAgB,GAChB,kBAAkB,GAClB,iBAAiB,GACjB,sBAAsB,GACtB,yBAAyB,GACzB,YAAY,GACZ,YAAY,CAAC;AAEjB;;;GAGG;AACH,qBAAa,QAAS,SAAQ,KAAK;IACjC,QAAQ,CAAC,IAAI,EAAE,YAAY,CAAC;IAC5B,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBAEtB,IAAI,EAAE,YAAY,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAM/D"}
+{"version":3,"file":"errors.d.ts","sourceRoot":"","sources":["../../src/edf/errors.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,MAAM,MAAM,cAAc,GACtB,sBAAsB,GACtB,eAAe,GACf,sBAAsB,GACtB,uBAAuB,GACvB,gBAAgB,GAChB,0BAA0B,GAC1B,2BAA2B,GAC3B,yBAAyB,GACzB,yBAAyB,GACzB,iBAAiB,GACjB,aAAa,GACb,kBAAkB,GAClB,gBAAgB,GAChB,0BAA0B,GAC1B,eAAe,GACf,cAAc,GACd,oBAAoB,GACpB,YAAY,GACZ,cAAc,GACd,eAAe,GACf,uBAAuB,GACvB,oBAAoB,CAAC;AAEzB,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,cAAc,CAAC;IACrB,QAAQ,EAAE,SAAS,GAAG,MAAM,CAAC;IAC7B,OAAO,EAAE,MAAM,CAAC;IAChB,kFAAkF;IAClF,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,MAAM,MAAM,YAAY,GACpB,gBAAgB,GAChB,kBAAkB,GAClB,iBAAiB,GACjB,sBAAsB,GACtB,yBAAyB,GACzB,YAAY,GACZ,YAAY,CAAC;AAEjB;;;GAGG;AACH,qBAAa,QAAS,SAAQ,KAAK;IACjC,QAAQ,CAAC,IAAI,EAAE,YAAY,CAAC;IAC5B,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBAEtB,IAAI,EAAE,YAAY,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAM/D"}

package/dist/edf/errors.js.map

@@ -1 +1 @@
-{"version":3,"file":"errors.js","sourceRoot":"","sources":["../../src/edf/errors.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AA0CH;;;GAGG;AACH,MAAM,OAAO,QAAS,SAAQ,KAAK;IACxB,IAAI,CAAe;IACnB,IAAI,CAAqB;IAElC,YAAY,IAAkB,EAAE,OAAe,EAAE,IAAa;QAC5D,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,IAAI,GAAG,UAAU,CAAC;QACvB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;QACjB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;IACnB,CAAC;CACF"}
+{"version":3,"file":"errors.js","sourceRoot":"","sources":["../../src/edf/errors.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AA2CH;;;GAGG;AACH,MAAM,OAAO,QAAS,SAAQ,KAAK;IACxB,IAAI,CAAe;IACnB,IAAI,CAAqB;IAElC,YAAY,IAAkB,EAAE,OAAe,EAAE,IAAa;QAC5D,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,IAAI,GAAG,UAAU,CAAC;QACvB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;QACjB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;IACnB,CAAC;CACF"}

package/dist/edf/reader.d.ts

@@ -33,12 +33,43 @@ export declare class EdfFile {
     #private;
     readonly path: string;
     readonly fileSize: number;
+    /**
+     * Last-modified time when this file was opened, in milliseconds, for the same reason as
+     * `fileSize`.
+     *
+     * Kept as the raw number rather than a Date because `new Date(ms).getTime()` truncates to
+     * whole milliseconds: comparing that against a later `fstat`, which carries the
+     * filesystem's sub-millisecond precision, reported every undisturbed conversion as one
+     * whose input had changed underneath it.
+     */
+    readonly modifiedAtOpenMs: number;
     readonly header: EdfHeader;
     /** Records actually present in the file, which may differ from the header's claim. */
     readonly recordCount: number;
     readonly trailingBytes: number;
     readonly diagnostics: Diagnostic[];
     private constructor();
+    /**
+     * SHA-256 of the bytes this conversion actually read.
+     *
+     * Hashed through the open descriptor, over exactly the `fileSize` bytes that were there
+     * when the file was opened — the same number every record count and window in the output
+     * was derived from. Re-opening the path to hash it afterwards described whatever was at
+     * that name by then: a recording still being written grew from 2,000 records to 3,000
+     * mid-conversion and metadata.json recorded `data_records: 2000` beside the checksum and
+     * byte count of the 3,000-record file, which is provenance for bytes nobody converted.
+     * Replacing the file at that path did the same thing more completely.
+     */
+    sha256(): Promise<string>;
+    /**
+     * Whether the file has changed since it was opened, by size or by modification time.
+     *
+     * Checked through the descriptor, so it answers for the bytes that were read rather than
+     * for whatever now answers to the same name. A recording still being written is the
+     * ordinary cause, and the conversion is still correct for the data it saw — it is the
+     * claim that the output describes the file as it now stands that stops being true.
+     */
+    changedSinceOpen(): Promise<boolean>;
     static open(path: string): Promise<EdfFile>;
     /** Signal channels, excluding the EDF+ annotations channel. */
     get dataSignals(): EdfSignal[];

package/dist/edf/reader.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"reader.d.ts","sourceRoot":"","sources":["../../src/edf/reader.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAMH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAE9C,OAAO,KAAK,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAExD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAGnD,oGAAoG;AACpG,eAAO,MAAM,mBAAmB,QAAkB,CAAC;AAEnD,MAAM,WAAW,WAAW;IAC1B,2EAA2E;IAC3E,gBAAgB,EAAE,MAAM,CAAC;IACzB,WAAW,EAAE,MAAM,CAAC;IACpB;;;;;OAKG;IACH,IAAI,EAAE,UAAU,CAAC;CAClB;AAED,MAAM,WAAW,kBAAkB;IACjC,sDAAsD;IACtD,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,2EAA2E;IAC3E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,qBAAa,OAAO;;IAClB,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,MAAM,EAAE,SAAS,CAAC;IAC3B,sFAAsF;IACtF,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;IAC/B,QAAQ,CAAC,WAAW,EAAE,UAAU,EAAE,CAAC;IAKnC,OAAO;WAkBM,IAAI,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAwDjD,+DAA+D;IAC/D,IAAI,WAAW,IAAI,SAAS,EAAE,CAE7B;IAED,IAAI,iBAAiB,IAAI,SAAS,EAAE,CAEnC;IAED,8EAA8E;IAC9E,IAAI,eAAe,IAAI,MAAM,CAE5B;IAED,oDAAoD;IAC7C,WAAW,CAAC,OAAO,GAAE,kBAAuB,GAAG,cAAc,CAAC,WAAW,CAAC;IAwDjF,gDAAgD;IAChD,QAAQ,CAAC,KAAK,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,GAAG,MAAM;IAmBlG,wDAAwD;IACxD,QAAQ,CAAC,KAAK,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,GAAG,MAAM;IAI7E,oEAAoE;IACpE,eAAe,CAAC,KAAK,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,GAAG,UAAU;IAKxF;;;;;;;;;;;OAWG;IACH;;;;;;;;;;OAUG;IACG,oBAAoB,IAAI,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IAiB9C,eAAe,IAAI,OAAO,CAAC;QAC/B,WAAW,EAAE,UAAU,EAAE,CAAC;QAC1B,YAAY,EAAE,CAAC,MAAM,GAAG,IAAI,CAAC,EAAE,CAAC;QAChC,SAAS,EAAE,MAAM,CAAC;KACnB,CAAC;IAoCI,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;CAS7B"}
+{"version":3,"file":"reader.d.ts","sourceRoot":"","sources":["../../src/edf/reader.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAQH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAE9C,OAAO,KAAK,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAExD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAGnD,oGAAoG;AACpG,eAAO,MAAM,mBAAmB,QAAkB,CAAC;AAEnD,MAAM,WAAW,WAAW;IAC1B,2EAA2E;IAC3E,gBAAgB,EAAE,MAAM,CAAC;IACzB,WAAW,EAAE,MAAM,CAAC;IACpB;;;;;OAKG;IACH,IAAI,EAAE,UAAU,CAAC;CAClB;AAED,MAAM,WAAW,kBAAkB;IACjC,sDAAsD;IACtD,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,2EAA2E;IAC3E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,qBAAa,OAAO;;IAClB,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B;;;;;;;;OAQG;IACH,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;IAClC,QAAQ,CAAC,MAAM,EAAE,SAAS,CAAC;IAC3B,sFAAsF;IACtF,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;IAC/B,QAAQ,CAAC,WAAW,EAAE,UAAU,EAAE,CAAC;IAKnC,OAAO;IAoBP;;;;;;;;;;OAUG;IACG,MAAM,IAAI,OAAO,CAAC,MAAM,CAAC;IAqB/B;;;;;;;OAOG;IACG,gBAAgB,IAAI,OAAO,CAAC,OAAO,CAAC;WAO7B,IAAI,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAyDjD,+DAA+D;IAC/D,IAAI,WAAW,IAAI,SAAS,EAAE,CAE7B;IAED,IAAI,iBAAiB,IAAI,SAAS,EAAE,CAEnC;IAED,8EAA8E;IAC9E,IAAI,eAAe,IAAI,MAAM,CAE5B;IAED,oDAAoD;IAC7C,WAAW,CAAC,OAAO,GAAE,kBAAuB,GAAG,cAAc,CAAC,WAAW,CAAC;IAwDjF,gDAAgD;IAChD,QAAQ,CAAC,KAAK,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,GAAG,MAAM;IAmBlG,wDAAwD;IACxD,QAAQ,CAAC,KAAK,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,GAAG,MAAM;IAI7E,oEAAoE;IACpE,eAAe,CAAC,KAAK,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,GAAG,UAAU;IAKxF;;;;;;;;;;;OAWG;IACH;;;;;;;;;;OAUG;IACG,oBAAoB,IAAI,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IAiB9C,eAAe,IAAI,OAAO,CAAC;QAC/B,WAAW,EAAE,UAAU,EAAE,CAAC;QAC1B,YAAY,EAAE,CAAC,MAAM,GAAG,IAAI,CAAC,EAAE,CAAC;QAChC,SAAS,EAAE,MAAM,CAAC;KACnB,CAAC;IAoCI,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;CAS7B"}

package/dist/edf/reader.js

@@ -6,6 +6,7 @@
  * and a 4 MB file use the same working set.
  */
 import { open, stat } from 'node:fs/promises';
+import { createHash } from 'node:crypto';
 import { EdfError } from './errors.js';
 import { FIXED_HEADER_BYTES, SIGNAL_HEADER_BYTES, parseHeader, peekSignalCount } from './header.js';
 import { decodeRecordAnnotations } from './annotations.js';
@@ -15,6 +16,16 @@ export const DEFAULT_CHUNK_BYTES = 8 * 1024 * 1024;
 export class EdfFile {
     path;
     fileSize;
+    /**
+     * Last-modified time when this file was opened, in milliseconds, for the same reason as
+     * `fileSize`.
+     *
+     * Kept as the raw number rather than a Date because `new Date(ms).getTime()` truncates to
+     * whole milliseconds: comparing that against a later `fstat`, which carries the
+     * filesystem's sub-millisecond precision, reported every undisturbed conversion as one
+     * whose input had changed underneath it.
+     */
+    modifiedAtOpenMs;
     header;
     /** Records actually present in the file, which may differ from the header's claim. */
     recordCount;
@@ -25,12 +36,56 @@ export class EdfFile {
     constructor(init) {
         this.path = init.path;
         this.fileSize = init.fileSize;
+        this.modifiedAtOpenMs = init.modifiedAtOpenMs;
         this.header = init.header;
         this.recordCount = init.recordCount;
         this.trailingBytes = init.trailingBytes;
         this.diagnostics = init.diagnostics;
         this.#handle = init.handle;
     }
+    /**
+     * SHA-256 of the bytes this conversion actually read.
+     *
+     * Hashed through the open descriptor, over exactly the `fileSize` bytes that were there
+     * when the file was opened — the same number every record count and window in the output
+     * was derived from. Re-opening the path to hash it afterwards described whatever was at
+     * that name by then: a recording still being written grew from 2,000 records to 3,000
+     * mid-conversion and metadata.json recorded `data_records: 2000` beside the checksum and
+     * byte count of the 3,000-record file, which is provenance for bytes nobody converted.
+     * Replacing the file at that path did the same thing more completely.
+     */
+    async sha256() {
+        this.#assertOpen();
+        const hash = createHash('sha256');
+        const buffer = Buffer.alloc(Math.min(this.fileSize, 4 * 1024 * 1024) || 1);
+        for (let at = 0; at < this.fileSize;) {
+            const want = Math.min(buffer.length, this.fileSize - at);
+            const { bytesRead } = await this.#handle.read(buffer, 0, want, at);
+            if (bytesRead <= 0) {
+                throw new EdfError('UNREADABLE', `Expected ${this.fileSize} bytes to checksum but the file ended at ${at}; ` +
+                    `it appears to have changed size while it was being read.`, 'Make sure the recording is not still being written to, then try again.');
+            }
+            hash.update(buffer.subarray(0, bytesRead));
+            at += bytesRead;
+        }
+        return hash.digest('hex');
+    }
+    /**
+     * Whether the file has changed since it was opened, by size or by modification time.
+     *
+     * Checked through the descriptor, so it answers for the bytes that were read rather than
+     * for whatever now answers to the same name. A recording still being written is the
+     * ordinary cause, and the conversion is still correct for the data it saw — it is the
+     * claim that the output describes the file as it now stands that stops being true.
+     */
+    async changedSinceOpen() {
+        if (this.#closed)
+            return false;
+        const now = await this.#handle.stat().catch(() => null);
+        if (now === null)
+            return false;
+        return now.size !== this.fileSize || now.mtimeMs !== this.modifiedAtOpenMs;
+    }
     static async open(path) {
         const info = await stat(path).catch((cause) => {
             throw new EdfError('UNREADABLE', `Cannot read "${path}": ${describe(cause)}`);
@@ -70,6 +125,7 @@ export class EdfFile {
             return new EdfFile({
                 path,
                 fileSize: info.size,
+                modifiedAtOpenMs: info.mtimeMs,
                 header,
                 recordCount,
                 trailingBytes,

package/dist/edf/reader.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.4.30",
+  "version": "0.4.32",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",