npm - edf2csv - Versions diffs - 0.4.12 → 0.4.13 - Mend

edf2csv 0.4.12 → 0.4.13

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (9) hide show

package/CHANGELOG.md CHANGED Viewed

@@ -3,6 +3,35 @@
 Notable changes to edf2csv. Versions follow [semantic versioning](https://semver.org); while the
 major version is 0, a minor bump may contain breaking changes.
+## 0.4.13
+### Fixed: `--info` disagreed with the conversion on a recording that starts mid-second
+0.4.9 made a continuous recording take its origin from the first record's timekeeping TAL,
+which is where EDF+ says it is. `--info` went on placing a requested window against zero, so
+the two stopped agreeing about the same file:
+```
+edf2csv fractional-start.edf --info --start 1     Would write 8 rows
+edf2csv fractional-start.edf --out ./converted --start 1
+                                                  signals.csv   10  rows
+```
+The estimate exists so that someone can decide whether a conversion is worth starting, and it
+was off by a fifth on a file whose discontinuous twin — byte-identical apart from the reserved
+field — agreed with itself the whole time. Which is what made it findable: the two are supposed
+to give the same answer, and 0.4.9 tested exactly that for a whole-file conversion, but not for
+a windowed one.
+`--info` reads annotations only for discontinuous files, on purpose: an earlier version was
+fixed for scanning every record of a continuous one just to report a header summary, at 0.29 s
+on a 12 MB file. So this does not undo that. A continuous recording needs one number, and the
+reader now offers one read to get it — its first record's timekeeping TAL, rather than every
+record's. `--info` on an 18 MB, 30,000-record EDF+C still returns in 0.05 s.
+The test now compares the estimate against the rows actually written for both twins across five
+windows, rather than asserting a number either one happens to produce.
 ## 0.4.12
 ### Fixed: `--info` could print a duration that cannot exist

package/dist/cli.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;;GAOG;AAeH,OAAO,EAA4B,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAiH9E,wBAAsB,IAAI,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAmTnE;~~AAueD~~,OAAO,EAAE,gBAAgB,EAAE,CAAC"}
1	+ {"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;;GAOG;AAeH,OAAO,EAA4B,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAiH9E,wBAAsB,IAAI,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAmTnE;AAqfD,OAAO,EAAE,gBAAgB,EAAE,CAAC"}

package/dist/cli.js CHANGED Viewed

@@ -421,10 +421,24 @@ async function showInfo(input, shared, asJson, jsonIndent) {
           A discontinuous file still needs the scan: without it the reported span and row
           estimate are wrong, which is a bug that has already been fixed once here.
         */
-        const needsRecordStarts = file.header.continuity === 'EDF+D' && file.annotationSignals.length > 0;
-        const annotationData = needsRecordStarts
+        const hasAnnotations = file.annotationSignals.length > 0;
+        const needsEveryRecordStart = file.header.continuity === 'EDF+D' && hasAnnotations;
+        /*
+          A continuous recording needs its origin too, which is one read rather than one per
+          record: 0.4.9 made its first record's timekeeping TAL the point the samples are timed
+          from, and this report went on placing a requested window against zero. `--info --start 1`
+          predicted 8 rows where the conversion wrote 10, on a file whose discontinuous twin —
+          identical but for the reserved field — agreed with itself.
+        */
+        const annotationData = needsEveryRecordStart
             ? await file.readAnnotations()
-            : { annotations: [], recordStarts: [], malformed: 0 };
+            : {
+                annotations: [],
+                recordStarts: file.header.continuity === 'EDF+C' && hasAnnotations
+                    ? [await file.readFirstRecordStart()]
+                    : [],
+                malformed: 0,
+            };
         const timing = deriveRecordStarts(file, annotationData);
         const plan = buildPlan({
             signals: file.header.signals,

package/dist/cli.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/edf/reader.d.ts CHANGED Viewed

@@ -65,6 +65,18 @@ export declare class EdfFile {
      * falls in, and some put every annotation in the first record. Reading only the
      * window's records would drop those entirely.
      */
+    /**
+     * Where the first data record starts, from its own timekeeping TAL.
+     *
+     * One record's worth of annotation bytes rather than the whole channel. A continuous
+     * recording's origin is the fraction of a second by which its first record follows the
+     * header's start time, and `--info` needs that to place a requested window — but it does
+     * not need the events, and finding one number by reading every record costs a seek per
+     * record across the whole file, which is the scan `--info` was deliberately spared.
+     *
+     * Returns null when there is nothing to read it from, in which case the origin is zero.
+     */
+    readFirstRecordStart(): Promise<number | null>;
     readAnnotations(): Promise<{
         annotations: Annotation[];
         recordStarts: (number | null)[];

package/dist/edf/reader.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/edf/reader.js CHANGED Viewed

@@ -171,6 +171,32 @@ export class EdfFile {
      * falls in, and some put every annotation in the first record. Reading only the
      * window's records would drop those entirely.
      */
+    /**
+     * Where the first data record starts, from its own timekeeping TAL.
+     *
+     * One record's worth of annotation bytes rather than the whole channel. A continuous
+     * recording's origin is the fraction of a second by which its first record follows the
+     * header's start time, and `--info` needs that to place a requested window — but it does
+     * not need the events, and finding one number by reading every record costs a seek per
+     * record across the whole file, which is the scan `--info` was deliberately spared.
+     *
+     * Returns null when there is nothing to read it from, in which case the origin is zero.
+     */
+    async readFirstRecordStart() {
+        this.#assertOpen();
+        const channel = this.annotationSignals[0];
+        if (!channel || this.recordCount === 0)
+            return null;
+        const { headerBytes, bytesPerSample } = this.header;
+        const buffer = Buffer.alloc(channel.samplesPerRecord * bytesPerSample);
+        if (buffer.length === 0)
+            return null;
+        const offset = headerBytes + channel.byteOffsetInRecord;
+        const bytesRead = await readFully(this.#handle, buffer, 0, buffer.length, offset);
+        if (bytesRead < buffer.length)
+            return null;
+        return decodeRecordAnnotations(buffer, 0).recordStart;
+    }
     async readAnnotations() {
         this.#assertOpen();
         const annotations = [];

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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.4.12",
+  "version": "0.4.13",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",