edf2csv 0.3.7 → 0.4.1

package/CHANGELOG.md

@@ -3,6 +3,120 @@
 Notable changes to edf2csv. Versions follow [semantic versioning](https://semver.org); while the
 major version is 0, a minor bump may contain breaking changes.
 
+## 0.4.1
+
+### Faster: large conversions run in about two thirds of the time
+
+A 19 MB recording converting to 168 MB of CSV took 1.90 s and now takes 1.35 s. The output is
+byte-identical — the 168 MB file compares equal, as does everything the fixtures produce across
+four flag combinations.
+
+Value cells were already cheap. A channel can only hold `digitalMax - digitalMin + 1` distinct
+readings, so a small cache of formatted strings serves millions of rows and `toFixed` runs a
+couple of thousand times for the whole conversion.
+
+The time column had no such luck. It rises monotonically, so no two rows share a string and it
+was formatted once per row — ten million calls on that file, and a third of the total time,
+more than reading the recording and writing the CSV put together.
+
+What repeats there is the offset *within* a record. Sample `s` sits at `s / rate` from the start
+of whichever record holds it, and a recording has only `samplesPerRecord` such offsets however
+long it runs. Splitting each one into whole seconds and printed fraction reduces the per-row
+work to an integer addition and a concatenation:
+
+```
+record starting at 42s, sample 7 of a 100 Hz record
+  ->  42 + 0 whole seconds, fraction ".070"  ->  "42.070"
+```
+
+The decomposition only holds for a record starting on a whole, non-negative second, which is
+what lets the fraction come entirely from the offset. Two cases therefore fall back to
+formatting the sum, and both were found by checking rather than by reasoning:
+
+- **A record starting mid-second** mixes the two fractions. Continuous recordings start every
+  record at `index * recordDuration`, so this only arises for a fractional record duration or a
+  discontinuous file whose stored start lands between seconds.
+- **A negative record start**, which appends the fraction the wrong way: −5 s plus half a
+  second is −4.5, but `"-5"` and `".500"` concatenate to −5.500. No recording starts before
+  zero, but an EDF+ timekeeping TAL is free to carry a negative onset, and that is reason
+  enough for the fast path to decline it.
+
+Checked against formatting the sum over 49,456 combinations — 29 sampling rates from 1e-6 Hz to
+2048 Hz, against record starts from 0 to 1e8 seconds, which is three years of continuous
+recording. Every one agrees.
+
+Past roughly 1e9 seconds the two answers separate, because the sum no longer fits its fraction
+into a double. Where they differ this one is right: 317 years in, sample 2 of a 999 Hz record
+is at 2/999 = 0.002002002…, which is `0.002002` at six places, and formatting the sum gives
+`0.002003`. Nothing real reaches that magnitude, and there is no case in which the change costs
+accuracy.
+
+## 0.4.0
+
+### Added: several recordings in one command
+
+Passing more than one file used to be a usage error, and the documentation's answer to
+"how do I convert a directory" was a shell loop. Now:
+
+```bash
+edf2csv /data/recordings/*.edf --out /data/csv
+```
+
+```
+[1/3] night-01.edf
+Wrote /data/csv/night-01
+  signals.csv  8,640,000  rows
+[2/3] night-02.edf
+...
+
+Converted 3 of 3 recordings.
+```
+
+With `--out` the named directory becomes the parent and each recording gets its own inside it,
+named after the file. Without `--out` each converts beside itself into `<name>_csv`, exactly as
+it would have done alone — so a glob behaves like the loop it replaces, and a single file
+behaves like it always did, down to the byte.
+
+**One bad file does not end the run.** It is reported with its name and the rest still convert.
+One unreadable recording among five hundred is a reason to name that recording, not to discard
+the work already done and refuse the remainder. The exit code is still non-zero and the closing
+line says how many made it, so nothing is quiet about it:
+
+```
+[2/3] night-02.edf
+error: night-02.edf: File is 17 bytes; an EDF header alone needs at least 256.
+
+Converted 2 of 3 recordings; 1 failed.
+```
+
+**Two recordings that would land in the same place are refused before anything is written.**
+One folder per night is how these are usually organised, so `n1/rec.edf` and `n2/rec.edf` both
+resolve to `<out>/rec`. Converting them in turn would leave one recording's data sitting under
+the other's name with nothing to show for it:
+
+```
+error: "n2/rec.edf" and "n1/rec.edf" would both be converted into "out/rec", so one would overwrite the other.
+       Convert them separately, or rename one of them.
+```
+
+**`--json` over several recordings is JSON Lines** — one object per line, so `jq` reads a
+record at a time instead of waiting for the run to finish. A single recording still prints the
+indented document it always has. Emitting a batch in the single-file shape would have repeated
+0.2.28's mistake of putting two documents on one stream and leaving the caller to find the
+boundary.
+
+`--stdout` still takes one recording, since one stream holds one table. Passing several says so
+rather than concatenating them.
+
+`--strict` counts warnings across the whole run. `--info` accepts several too, printing each in
+turn.
+
+### A note on exit codes
+
+2 still means the command was wrong and 1 that something went wrong with a file. When both
+happen in one batch the result is 1: once a file has genuinely failed, the invocation cannot be
+the whole story. A single input has only ever one outcome, so its exit status is unchanged.
+
 ## 0.3.7
 
 ### Fixed: messages that list what the file contains could run to 1,500 characters

package/dist/cli/report.d.ts

@@ -43,6 +43,13 @@ export declare function formatInfo(file: EdfFile, plan: ConversionPlan): string;
 /**
  * The `--info` view as JSON, for surveying files from a script.
  *
+ * `indent` is 2 for a single recording, matching what this has always printed, and null for
+ * a batch — several pretty-printed documents run together are readable by a streaming parser
+ * but not by anything that expects one record per line, and a batch is exactly where
+ * line-oriented reading is wanted. null rather than undefined because a default parameter
+ * takes effect when undefined is passed, which quietly restored the indentation this was
+ * meant to drop; JSON.stringify itself wants undefined, so it is translated at the call.
+ *
  * `--info` answers "what is in this recording and what would converting it cost", which
  * is exactly the question you want to ask across a directory of hundreds of recordings —
  * and the text table is the wrong shape for that. `--json` previously applied only to
@@ -52,9 +59,9 @@ export declare function formatInfo(file: EdfFile, plan: ConversionPlan): string;
  * Field names match `metadata.json` where the two describe the same thing, so a survey and
  * a conversion can be read by the same code.
  */
-export declare function infoJson(file: EdfFile, plan: ConversionPlan): string;
+export declare function infoJson(file: EdfFile, plan: ConversionPlan, indent?: number | null): string;
 /** One line per diagnostic, prefixed so warnings are greppable. */
 export declare function formatDiagnostics(diagnostics: readonly Diagnostic[]): string;
 export declare function formatSummary(result: ConvertResult): string;
-export declare function summaryJson(result: ConvertResult): string;
+export declare function summaryJson(result: ConvertResult, indent?: number | null): string;
 //# sourceMappingURL=report.d.ts.map

package/dist/cli/report.d.ts.map

@@ -1 +1 @@
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package/dist/cli/report.js

@@ -127,6 +127,13 @@ export function formatInfo(file, plan) {
 /**
  * The `--info` view as JSON, for surveying files from a script.
  *
+ * `indent` is 2 for a single recording, matching what this has always printed, and null for
+ * a batch — several pretty-printed documents run together are readable by a streaming parser
+ * but not by anything that expects one record per line, and a batch is exactly where
+ * line-oriented reading is wanted. null rather than undefined because a default parameter
+ * takes effect when undefined is passed, which quietly restored the indentation this was
+ * meant to drop; JSON.stringify itself wants undefined, so it is translated at the call.
+ *
  * `--info` answers "what is in this recording and what would converting it cost", which
  * is exactly the question you want to ask across a directory of hundreds of recordings —
  * and the text table is the wrong shape for that. `--json` previously applied only to
@@ -136,7 +143,7 @@ export function formatInfo(file, plan) {
  * Field names match `metadata.json` where the two describe the same thing, so a survey and
  * a conversion can be read by the same code.
  */
-export function infoJson(file, plan) {
+export function infoJson(file, plan, indent = 2) {
     const { header } = file;
     const fileFor = new Map();
     for (const group of plan.groups) {
@@ -183,7 +190,7 @@ export function infoJson(file, plan) {
         warnings: plan.diagnostics
             .concat(file.diagnostics)
             .map((d) => ({ code: d.code, severity: d.severity, message: d.message })),
-    }, null, 2);
+    }, null, indent ?? undefined);
 }
 /** One line per diagnostic, prefixed so warnings are greppable. */
 export function formatDiagnostics(diagnostics) {
@@ -207,7 +214,7 @@ export function formatSummary(result) {
     lines.push(`Done in ${(result.elapsedMs / 1000).toFixed(1)}s.`);
     return lines.join('\n');
 }
-export function summaryJson(result) {
+export function summaryJson(result, indent = 2) {
     return JSON.stringify({
         output_dir: result.outputDir,
         files: result.files,
@@ -216,6 +223,6 @@ export function summaryJson(result) {
         records: result.file.recordCount,
         elapsed_ms: result.elapsedMs,
         warnings: result.diagnostics.map((d) => ({ code: d.code, severity: d.severity, message: d.message })),
-    }, null, 2);
+    }, null, indent ?? undefined);
 }
 //# sourceMappingURL=report.js.map

package/dist/cli/report.js.map

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package/dist/cli.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;;GAOG;AAUH,OAAO,EAA4B,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAiF9E,wBAAsB,IAAI,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CA0PnE;AA6CD,OAAO,EAAE,gBAAgB,EAAE,CAAC"}
+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;;GAOG;AAWH,OAAO,EAA4B,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAwF9E,wBAAsB,IAAI,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAsMnE;AAsQD,OAAO,EAAE,gBAAgB,EAAE,CAAC"}

package/dist/cli.js

@@ -10,6 +10,7 @@
 import { parseArgs } from 'node:util';
 import { pathToFileURL, fileURLToPath } from 'node:url';
 import { realpathSync } from 'node:fs';
+import path from 'node:path';
 import process from 'node:process';
 import { EdfError } from './edf/errors.js';
 import { EdfFile } from './edf/reader.js';
@@ -24,7 +25,7 @@ const USAGE = `edf2csv ${VERSION}
 Convert EDF, EDF+ and BDF recordings to CSV
 
 Usage
-  edf2csv <recording.edf> [options]
+  edf2csv <recording.edf> [more.edf ...] [options]
 
 Options
   -i, --info             Show the recording's structure and estimated output size,
@@ -48,6 +49,12 @@ Options
   -h, --help             Show this help
   -V, --version          Show the version
 
+Several recordings
+  Pass more than one and each is converted in turn. Without --out each lands
+  beside itself as usual; with --out that directory becomes the parent and each
+  recording gets its own inside it. A file that cannot be read is reported and
+  the rest still convert, with a non-zero exit at the end.
+
 Output
   A directory containing signals.csv, channels.csv, metadata.json, and
   annotations.csv when the recording carries EDF+ annotations. Channels recorded
@@ -61,6 +68,7 @@ Examples
   edf2csv recording.edf --channels "EEG Fpz-Cz,ECG" --out ./converted
   edf2csv recording.edf --start 30m --duration 5m
   edf2csv recording.edf --annotations-only
+  edf2csv /data/*.edf --out ./converted
 `;
 /** A problem with how the command was invoked, as opposed to a problem with the file. */
 class OptionError extends Error {
@@ -139,139 +147,227 @@ export async function main(argv) {
         process.stderr.write(`No input file given.\n\n${USAGE}`);
         return EXIT_USAGE;
     }
-    if (positionals.length > 1) {
-        process.stderr.write(`Expected one input file but got ${positionals.length}: ${positionals.join(', ')}\n` +
-            `Convert them one at a time, or use a shell loop.\n`);
-        return EXIT_USAGE;
-    }
-    const input = positionals[0];
+    const inputs = positionals;
+    const batch = inputs.length > 1;
     const quiet = values['quiet'] === true;
     const asJson = values['json'] === true;
     const strict = values['strict'] === true;
     const toStdout = values['stdout'] === true;
     // Both of these claim stdout. Allowing them together wrote the CSV and then the summary
-    // object onto the same stream, producing a document that is neither valid CSV nor valid
+    // object onto one stream, producing a document that is neither valid CSV nor valid
     // JSON — and silently, since each half looked right on its own.
     if (toStdout && asJson) {
         process.stderr.write('--stdout and --json both write to stdout, so they cannot be combined.\n' +
             'Use --stdout for the CSV, or --json for the summary.\n');
         return EXIT_USAGE;
     }
+    // One stream holds one table, for the same reason it holds one recording: concatenating
+    // them would give a CSV whose rows come from different files with nothing marking where
+    // one ends. Naming the count makes it obvious a glob was the cause.
+    if (toStdout && batch) {
+        process.stderr.write(`--stdout writes a single CSV, so it cannot take ${inputs.length} recordings.\n` +
+            `Convert them to directories instead, or run edf2csv once per file.\n`);
+        return EXIT_USAGE;
+    }
+    /*
+      One recording prints the document it always printed; several print one per line.
+  
+      Pretty-printed objects run together are still readable by a streaming JSON parser, but
+      not by anything that reads a record per line — and a batch is exactly where that is
+      wanted. Emitting a batch in the single-file shape would repeat 0.2.28's mistake of
+      putting two documents on one stream and leaving the caller to work out the boundary.
+  
+      null, not undefined: the serialisers default this argument to 2, and a default parameter
+      takes effect for undefined, which silently gave a batch the indentation it was supposed
+      to be dropping.
+    */
+    const jsonIndent = batch ? null : 2;
     try {
-        const channels = splitChannels(values['channels']);
-        const start = optionalTime(values['start'], '--start');
-        const duration = optionalTime(values['duration'], '--duration');
-        const end = optionalTime(values['end'], '--end');
-        const decimals = optionalDecimals(values['decimals']);
+        const outOption = typeof values['out'] === 'string' ? values['out'] : undefined;
+        const destinations = destinationsFor(inputs, outOption);
+        assertDistinct(inputs, destinations);
+        const shared = {
+            channels: splitChannels(values['channels']),
+            start: optionalTime(values['start'], '--start'),
+            startText: typeof values['start'] === 'string' ? values['start'] : undefined,
+            duration: optionalTime(values['duration'], '--duration'),
+            end: optionalTime(values['end'], '--end'),
+            endText: typeof values['end'] === 'string' ? values['end'] : undefined,
+            decimals: optionalDecimals(values['decimals']),
+            annotationsOnly: values['annotations-only'] === true,
+            gzip: values['gzip'] === true,
+        };
         if (values['info'] === true) {
-            const file = await EdfFile.open(input);
+            const failures = [];
+            let warnings = 0;
+            for (const [index, input] of inputs.entries()) {
+                // A blank line between reports, so several tables read as one document.
+                if (batch && !asJson && index > 0)
+                    process.stdout.write('\n');
+                try {
+                    warnings += await showInfo(input, shared, asJson, jsonIndent);
+                }
+                catch (error) {
+                    failures.push(reportError(error, batch ? input : undefined));
+                }
+            }
+            if (failures.length > 0)
+                return worstOf(failures);
+            return strict && warnings > 0 ? EXIT_ERROR : EXIT_OK;
+        }
+        const showProgress = !quiet && !asJson && !toStdout && process.stderr.isTTY === true;
+        const failures = [];
+        let warnings = 0;
+        let converted = 0;
+        for (const [index, input] of inputs.entries()) {
+            const destination = destinations[index];
+            // Which recording this is, before anything it prints. Without it a batch produces a
+            // stack of summaries and errors with nothing saying which file each belongs to.
+            if (batch && !quiet && !asJson) {
+                process.stderr.write(`[${index + 1}/${inputs.length}] ${printable(input)}\n`);
+            }
             try {
-                /*
-                  Read the annotation channel only when the timing actually depends on it.
-        
-                  --info is documented as a header-only summary that returns immediately whatever
-                  the file's size, but it called readAnnotations() on every EDF+/BDF+ file — a seek
-                  into every data record. deriveRecordStarts discards that data unless the file is
-                  EDF+D, where record start times are stored rather than arithmetic, so on a
-                  continuous recording the whole scan was thrown away. It cost 0.29 s on a 12 MB
-                  file and scaled with record count.
-        
-                  A discontinuous file still needs the scan: without it the reported span and row
-                  estimate are wrong, which is a bug that has already been fixed once here.
-                */
-                const needsRecordStarts = file.header.continuity === 'EDF+D' && file.annotationSignals.length > 0;
-                const annotationData = needsRecordStarts
-                    ? await file.readAnnotations()
-                    : { annotations: [], recordStarts: [], malformed: 0 };
-                const timing = deriveRecordStarts(file, annotationData);
-                const plan = buildPlan({
-                    signals: file.header.signals,
-                    recordDuration: file.header.recordDuration,
-                    recordCount: file.recordCount,
-                    hasAnnotationChannel: file.annotationSignals.length > 0,
-                    recordStarts: timing.starts,
-                }, {
-                    channels,
-                    start,
-                    startText: typeof values['start'] === 'string' ? values['start'] : undefined,
-                    duration,
-                    end,
-                    endText: typeof values['end'] === 'string' ? values['end'] : undefined,
-                    decimals,
-                    annotationsOnly: values['annotations-only'] === true,
-                    // --info reports the names a conversion would produce, so it needs the same
-                    // flag: with --gzip those names end in .csv.gz.
-                    gzip: values['gzip'] === true,
+                warnings += await convertOne(input, destination, {
+                    ...shared,
+                    // With one input and no --out, convert() derives the default itself, exactly as
+                    // it did before batches existed.
+                    outputDir: outOption === undefined && !batch ? undefined : destination,
+                    checksum: values['checksum'] === true,
+                    force: values['force'] === true,
+                    toStdout,
+                    quiet,
+                    asJson,
+                    showProgress,
+                    jsonIndent,
                 });
-                plan.diagnostics.push(...timing.diagnostics);
-                process.stdout.write(asJson ? `${infoJson(file, plan)}\n` : `${formatInfo(file, plan)}\n`);
-                // Under --json the warnings travel inside the document, exactly as they do for a
-                // conversion, so stderr stays empty and the whole result is one parseable thing.
-                const diagnostics = [...withoutFileRateWarning(file.diagnostics), ...plan.diagnostics];
-                if (!asJson && diagnostics.length > 0) {
-                    process.stderr.write(`\n${formatDiagnostics(diagnostics)}\n`);
-                }
-                if (strict && diagnostics.length > 0)
-                    return EXIT_ERROR;
+                converted++;
             }
-            finally {
-                await file.close();
+            catch (error) {
+                failures.push(reportError(error, batch ? input : undefined));
+                /*
+                  A batch keeps going. One unreadable recording among five hundred is a reason to
+                  report that file, not to abandon the ones already converted and refuse the rest.
+                  The exit code still reports the run as failed, and the closing line says how many
+                  of them made it, so nothing about the failure is quiet.
+                */
+                if (!batch)
+                    return failures[0];
             }
-            return EXIT_OK;
         }
-        const showProgress = !quiet && !asJson && !toStdout && process.stderr.isTTY === true;
-        let lastTick = 0;
-        const destination = typeof values['out'] === 'string' ? values['out'] : defaultOutputDir(input);
+        if (batch && !quiet && !asJson) {
+            process.stderr.write(`\nConverted ${converted} of ${inputs.length} recordings` +
+                `${failures.length > 0 ? `; ${failures.length} failed` : ''}.\n`);
+        }
+        if (failures.length > 0)
+            return worstOf(failures);
+        /*
+          --strict turns any warning into a non-zero exit, for pipelines that would rather stop
+          than proceed on a recording the tool had something to say about.
+    
+          The output is still written. A warning describes the recording, not a failure to
+          convert it — a truncated file converts correctly for the records that are there — so
+          destroying that work would be the wrong response. The exit code is the signal; what
+          to do about it is the caller's decision, and they still have the files to inspect.
+        */
+        if (strict && warnings > 0) {
+            process.stderr.write(`\n--strict: ${warnings} warning${warnings === 1 ? '' : 's'} raised, so this run is ` +
+                `reported as a failure. The output was still written.\n`);
+            return EXIT_ERROR;
+        }
+        return EXIT_OK;
+    }
+    catch (error) {
+        return reportError(error);
+    }
+}
+/** Print one recording's `--info`, and return how many diagnostics it raised. */
+async function showInfo(input, shared, asJson, jsonIndent) {
+    const file = await EdfFile.open(input);
+    try {
         /*
-          Interrupting a conversion leaves a CSV that stops mid-recording but is still
-          perfectly well-formed, so nothing about the file itself reveals that half the
-          data is missing. Saying so on the way out is the whole point of a tool that
-          claims it will not go quiet when something is wrong.
+          Read the annotation channel only when the timing actually depends on it.
+    
+          --info is documented as a header-only summary that returns immediately whatever
+          the file's size, but it called readAnnotations() on every EDF+/BDF+ file — a seek
+          into every data record. deriveRecordStarts discards that data unless the file is
+          EDF+D, where record start times are stored rather than arithmetic, so on a
+          continuous recording the whole scan was thrown away. It cost 0.29 s on a 12 MB
+          file and scaled with record count.
+    
+          A discontinuous file still needs the scan: without it the reported span and row
+          estimate are wrong, which is a bug that has already been fixed once here.
         */
-        const onInterrupt = (signal) => {
-            if (showProgress)
-                process.stderr.write('\r\u001b[K');
-            process.stderr.write(`\ninterrupted (${signal}): the conversion stopped part way through.\n` +
-                `       Files already written to "${destination}" are incomplete and should not be used.\n`);
-            // 128 + signal number, the conventional exit status for dying to a signal.
-            process.exit(signal === 'SIGINT' ? 130 : 143);
-        };
-        process.once('SIGINT', onInterrupt);
-        process.once('SIGTERM', onInterrupt);
+        const needsRecordStarts = file.header.continuity === 'EDF+D' && file.annotationSignals.length > 0;
+        const annotationData = needsRecordStarts
+            ? await file.readAnnotations()
+            : { annotations: [], recordStarts: [], malformed: 0 };
+        const timing = deriveRecordStarts(file, annotationData);
+        const plan = buildPlan({
+            signals: file.header.signals,
+            recordDuration: file.header.recordDuration,
+            recordCount: file.recordCount,
+            hasAnnotationChannel: file.annotationSignals.length > 0,
+            recordStarts: timing.starts,
+        }, shared);
+        plan.diagnostics.push(...timing.diagnostics);
+        process.stdout.write(asJson ? `${infoJson(file, plan, jsonIndent)}\n` : `${formatInfo(file, plan)}\n`);
+        // Under --json the warnings travel inside the document, exactly as they do for a
+        // conversion, so stderr stays empty and the whole result is one parseable thing.
+        const diagnostics = [...withoutFileRateWarning(file.diagnostics), ...plan.diagnostics];
+        if (!asJson && diagnostics.length > 0) {
+            process.stderr.write(`\n${formatDiagnostics(diagnostics)}\n`);
+        }
+        return diagnostics.length;
+    }
+    finally {
+        await file.close();
+    }
+}
+/** Convert one recording, and return how many diagnostics it raised. */
+async function convertOne(input, destination, options) {
+    const { quiet, asJson, showProgress, toStdout } = options;
+    let lastTick = 0;
+    /*
+      Interrupting a conversion leaves a CSV that stops mid-recording but is still
+      perfectly well-formed, so nothing about the file itself reveals that half the
+      data is missing. Saying so on the way out is the whole point of a tool that
+      claims it will not go quiet when something is wrong.
+    */
+    const onInterrupt = (signal) => {
+        if (showProgress)
+            process.stderr.write('\r\u001b[K');
+        process.stderr.write(`\ninterrupted (${signal}): the conversion stopped part way through.\n` +
+            `       Files already written to "${destination}" are incomplete and should not be used.\n`);
+        // 128 + signal number, the conventional exit status for dying to a signal.
+        process.exit(signal === 'SIGINT' ? 130 : 143);
+    };
+    process.once('SIGINT', onInterrupt);
+    process.once('SIGTERM', onInterrupt);
+    try {
         const result = await convert(input, {
-            outputDir: typeof values['out'] === 'string' ? values['out'] : undefined,
-            channels,
-            start,
-            startText: typeof values['start'] === 'string' ? values['start'] : undefined,
-            duration,
-            end,
-            endText: typeof values['end'] === 'string' ? values['end'] : undefined,
-            decimals,
-            annotationsOnly: values['annotations-only'] === true,
-            checksum: values['checksum'] === true,
-            gzip: values['gzip'] === true,
-            force: values['force'] === true,
-            toStdout,
+            ...options,
             onProgress: showProgress
                 ? (progress) => {
                     const now = Date.now();
                     if (now - lastTick < 100)
                         return;
                     lastTick = now;
-                    const percent = progress.recordsTotal === 0 ? 100 : Math.floor((progress.recordsDone / progress.recordsTotal) * 100);
+                    const percent = progress.recordsTotal === 0
+                        ? 100
+                        : Math.floor((progress.recordsDone / progress.recordsTotal) * 100);
                     process.stderr.write(`\r  converting… ${percent}%`);
                 }
                 : undefined,
         });
-        process.off('SIGINT', onInterrupt);
-        process.off('SIGTERM', onInterrupt);
         if (showProgress)
             process.stderr.write('\r\u001b[K');
         if (result.diagnostics.length > 0 && !asJson) {
             process.stderr.write(`${formatDiagnostics(result.diagnostics)}\n\n`);
         }
         if (asJson) {
-            process.stdout.write(`${summaryJson(result)}\n`);
+            // One object per line, so a batch is JSON Lines — `jq` reads a record at a time
+            // rather than waiting for the whole run to finish.
+            process.stdout.write(`${summaryJson(result, options.jsonIndent)}\n`);
         }
         else if (!quiet) {
             // With --stdout there is no directory to summarise, and the row count is the only
@@ -284,39 +380,92 @@ export async function main(argv) {
                 process.stderr.write(`${formatSummary(result)}\n`);
             }
         }
-        /*
-          --strict turns any warning into a non-zero exit, for pipelines that would rather stop
-          than proceed on a recording the tool had something to say about.
-    
-          The output is still written. A warning describes the recording, not a failure to
-          convert it — a truncated file converts correctly for the records that are there — so
-          destroying that work would be the wrong response. The exit code is the signal; what
-          to do about it is the caller's decision, and they still have the files to inspect.
-        */
-        if (strict && result.diagnostics.length > 0) {
-            process.stderr.write(`\n--strict: ${result.diagnostics.length} warning${result.diagnostics.length === 1 ? '' : 's'} ` +
-                `raised, so this run is reported as a failure. The output was still written to ` +
-                `"${result.outputDir}".\n`);
-            return EXIT_ERROR;
-        }
-        return EXIT_OK;
+        return result.diagnostics.length;
     }
-    catch (error) {
-        if (error instanceof EdfError || error instanceof ConversionError) {
-            process.stderr.write(`error: ${printableLines(error.message, '       ')}\n`);
-            if (error.hint)
-                process.stderr.write(`       ${error.hint}\n`);
-            return EXIT_ERROR;
-        }
-        if (error instanceof ChannelSelectionError ||
-            error instanceof TimeRangeError ||
-            error instanceof OptionError) {
-            process.stderr.write(`error: ${printableLines(error.message, '       ')}\n`);
-            return EXIT_USAGE;
+    finally {
+        process.off('SIGINT', onInterrupt);
+        process.off('SIGTERM', onInterrupt);
+    }
+}
+/**
+ * Where each recording's output goes.
+ *
+ * With one input `--out` names the output directory itself, which is what it has always
+ * meant. With several it names a parent and each recording gets its own directory inside
+ * it, because writing several recordings into one directory would have them overwrite each
+ * other's `signals.csv` — the one thing a batch must not do quietly.
+ *
+ * With no `--out` at all, every recording converts beside itself exactly as it would have
+ * done alone, so a glob behaves like the shell loop it replaces.
+ */
+function destinationsFor(inputs, out) {
+    if (out === undefined)
+        return inputs.map((input) => defaultOutputDir(input));
+    if (inputs.length === 1)
+        return [out];
+    return inputs.map((input) => path.join(out, stemOf(input)));
+}
+/** File name without its extension, keeping a leading dot: `.hidden.edf` -> `.hidden`. */
+function stemOf(file) {
+    const base = path.basename(file);
+    const dot = base.lastIndexOf('.');
+    return dot > 0 ? base.slice(0, dot) : base;
+}
+/**
+ * Refuse a batch in which two recordings would land in the same directory.
+ *
+ * Two files with the same name in different folders — `night-1/rec.edf` and
+ * `night-2/rec.edf`, which is how recordings usually get organised — both resolve to
+ * `<out>/rec`. Converting them in turn would leave one recording's data sitting under the
+ * other's name with nothing to show it had happened, so the run stops before writing
+ * anything at all.
+ */
+function assertDistinct(inputs, destinations) {
+    const claimed = new Map();
+    for (const [index, destination] of destinations.entries()) {
+        const key = path.resolve(destination);
+        const first = claimed.get(key);
+        if (first !== undefined) {
+            throw new OptionError(`"${inputs[index]}" and "${first}" would both be converted into "${destination}", ` +
+                `so one would overwrite the other.\n` +
+                `Convert them separately, or rename one of them.`);
         }
-        process.stderr.write(`error: ${message(error, '       ')}\n`);
+        claimed.set(key, inputs[index]);
+    }
+}
+/**
+ * The exit code for a run in which several files failed for different reasons.
+ *
+ * 2 means "you invoked it wrong" and 1 means "something went wrong with a file". When both
+ * happened, 1 is the honest answer: the invocation cannot be the whole story once a file has
+ * genuinely failed. With a single input there is only ever one code, so its exit status is
+ * exactly what it always was.
+ */
+function worstOf(codes) {
+    return codes.includes(EXIT_ERROR) ? EXIT_ERROR : EXIT_USAGE;
+}
+/**
+ * Report an error the way this command always has, and give the exit code it implies.
+ *
+ * `input` names the recording while a batch is running: several failures otherwise arrive
+ * as a stack of messages with nothing saying which file each belongs to.
+ */
+function reportError(error, input) {
+    const where = input === undefined ? '' : `${printable(input)}: `;
+    if (error instanceof EdfError || error instanceof ConversionError) {
+        process.stderr.write(`error: ${where}${printableLines(error.message, '       ')}\n`);
+        if (error.hint)
+            process.stderr.write(`       ${error.hint}\n`);
         return EXIT_ERROR;
     }
+    if (error instanceof ChannelSelectionError ||
+        error instanceof TimeRangeError ||
+        error instanceof OptionError) {
+        process.stderr.write(`error: ${where}${printableLines(error.message, '       ')}\n`);
+        return EXIT_USAGE;
+    }
+    process.stderr.write(`error: ${where}${message(error, '       ')}\n`);
+    return EXIT_ERROR;
 }
 function splitChannels(raw) {
     if (raw === undefined)

package/dist/cli.js.map

@@ -1 +1 @@
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package/dist/convert/run.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAOnD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,cAAc,CAAC;AAEnB,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B;;;;;;OAMG;IACH,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAYD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CA+GrG;AAsDD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}

package/dist/convert/run.js

@@ -16,7 +16,7 @@ import { EdfFile } from '../edf/reader.js';
 import { describeFormat, formatRates, formatWallClock } from '../edf/header.js';
 import { BufferedLineWriter, csvRow } from '../format/csv.js';
 import { listed } from '../format/list.js';
-import { fixed, makeSampleFormatter } from '../format/number.js';
+import { fixed, makeSampleFormatter, makeTimeFormatter } from '../format/number.js';
 import { buildPlan, withoutFileRateWarning } from './plan.js';
 import { deriveRecordStarts } from './timing.js';
 import { sampleTimeIsInRange } from './time-range.js';
@@ -264,6 +264,7 @@ async function writeSignalFiles(file, plan, outputDir, recordStarts, options) {
             group,
             writer,
             formatters: group.channels.map((c) => makeSampleFormatter(c.signal, c.decimals)),
+            formatTime: makeTimeFormatter(group.samplesPerRecord, group.rate, group.timeDecimals),
             rows: 0,
             settled,
         };
@@ -301,13 +302,13 @@ async function streamSignalRows(file, plan, open, recordStarts, options) {
             const index = batch.firstRecordIndex + r;
             const recordStart = recordStarts ? (recordStarts[index] ?? index * recordDuration) : index * recordDuration;
             for (const entry of open) {
-                const { group, writer, formatters } = entry;
-                const { channels, rate, timeDecimals: tDecimals } = group;
+                const { group, writer, formatters, formatTime } = entry;
+                const { channels, rate } = group;
                 for (let sample = 0; sample < group.samplesPerRecord; sample++) {
                     const time = recordStart + sample / rate;
                     if (!sampleTimeIsInRange(time, startSeconds, endSeconds))
                         continue;
-                    let row = fixed(time, tDecimals);
+                    let row = formatTime(recordStart, sample);
                     for (let c = 0; c < channels.length; c++) {
                         const channel = channels[c];
                         const format = formatters[c];

package/dist/convert/run.js.map

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package/dist/format/number.d.ts

@@ -39,4 +39,29 @@ export declare function timeDecimals(samplingRate: number): number;
 export declare function formatBytes(bytes: number): string;
 /** Human-readable duration: 1h 05m 12s. */
 export declare function formatDuration(seconds: number): string;
+/**
+ * Formats the time column, reusing the part of it that repeats.
+ *
+ * Every value cell is already cached — a channel has at most `digitalMax - digitalMin + 1`
+ * distinct readings, so the same handful of strings serve millions of rows. The time column
+ * had no such luck: it rises monotonically, so no two rows share a string and `toFixed` ran
+ * once per row. On a ten-million-row conversion that was a third of the total time, more
+ * than reading the file and writing the CSV put together.
+ *
+ * What repeats is the offset within a record. Sample `s` sits at `s / rate` from the start of
+ * whichever record holds it, and there are only `samplesPerRecord` such offsets in the whole
+ * recording. Splitting each into whole seconds and printed fraction turns the per-row work
+ * into one integer addition and a concatenation:
+ *
+ *     record starting at 42s, sample 7 of a 100 Hz record
+ *     -> 42 + 0 whole seconds, fraction ".070"  ->  "42.070"
+ *
+ * The decomposition is only valid when the record starts on a whole, non-negative second,
+ * which is what lets the fraction come entirely from the offset. A record starting at 0.5 s would mix the
+ * two, so those fall back to formatting the sum directly. Continuous recordings start every
+ * record at `index * recordDuration`, so this holds for all of them whose record duration is
+ * a whole number of seconds, and for discontinuous files it holds per record depending on
+ * where that record actually starts.
+ */
+export declare function makeTimeFormatter(samplesPerRecord: number, rate: number, decimals: number): (recordStart: number, sample: number) => string;
 //# sourceMappingURL=number.d.ts.map

package/dist/format/number.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"number.d.ts","sourceRoot":"","sources":["../../src/format/number.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAMlD;;;;;GAKG;AACH,wBAAgB,KAAK,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CA6B7D;AAED,iEAAiE;AACjE,MAAM,MAAM,eAAe,GAAG,CAAC,OAAO,EAAE,MAAM,KAAK,MAAM,CAAC;AAE1D,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,GAAG,eAAe,CAkCxF;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,YAAY,CAAC,YAAY,EAAE,MAAM,GAAG,MAAM,CAMzD;AAED,2DAA2D;AAC3D,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAUjD;AAED,2CAA2C;AAC3C,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAetD"}
+{"version":3,"file":"number.d.ts","sourceRoot":"","sources":["../../src/format/number.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAMlD;;;;;GAKG;AACH,wBAAgB,KAAK,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CA6B7D;AAED,iEAAiE;AACjE,MAAM,MAAM,eAAe,GAAG,CAAC,OAAO,EAAE,MAAM,KAAK,MAAM,CAAC;AAE1D,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,GAAG,eAAe,CAkCxF;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,YAAY,CAAC,YAAY,EAAE,MAAM,GAAG,MAAM,CAMzD;AAED,2DAA2D;AAC3D,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAUjD;AAED,2CAA2C;AAC3C,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAetD;AAKD;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAgB,iBAAiB,CAC/B,gBAAgB,EAAE,MAAM,EACxB,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GACf,CAAC,WAAW,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,KAAK,MAAM,CA2CjD"}

package/dist/format/number.js

@@ -137,4 +137,66 @@ export function formatDuration(seconds) {
         return `${m}m ${sText}s`;
     return `${sText}s`;
 }
+/** A record can declare a great many samples; two arrays this size is the cost of caching. */
+const MAX_CACHED_OFFSETS = 1 << 20;
+/**
+ * Formats the time column, reusing the part of it that repeats.
+ *
+ * Every value cell is already cached — a channel has at most `digitalMax - digitalMin + 1`
+ * distinct readings, so the same handful of strings serve millions of rows. The time column
+ * had no such luck: it rises monotonically, so no two rows share a string and `toFixed` ran
+ * once per row. On a ten-million-row conversion that was a third of the total time, more
+ * than reading the file and writing the CSV put together.
+ *
+ * What repeats is the offset within a record. Sample `s` sits at `s / rate` from the start of
+ * whichever record holds it, and there are only `samplesPerRecord` such offsets in the whole
+ * recording. Splitting each into whole seconds and printed fraction turns the per-row work
+ * into one integer addition and a concatenation:
+ *
+ *     record starting at 42s, sample 7 of a 100 Hz record
+ *     -> 42 + 0 whole seconds, fraction ".070"  ->  "42.070"
+ *
+ * The decomposition is only valid when the record starts on a whole, non-negative second,
+ * which is what lets the fraction come entirely from the offset. A record starting at 0.5 s would mix the
+ * two, so those fall back to formatting the sum directly. Continuous recordings start every
+ * record at `index * recordDuration`, so this holds for all of them whose record duration is
+ * a whole number of seconds, and for discontinuous files it holds per record depending on
+ * where that record actually starts.
+ */
+export function makeTimeFormatter(samplesPerRecord, rate, decimals) {
+    const direct = (recordStart, sample) => fixed(recordStart + sample / rate, decimals);
+    if (!(rate > 0) ||
+        !Number.isFinite(rate) ||
+        samplesPerRecord <= 0 ||
+        samplesPerRecord > MAX_CACHED_OFFSETS) {
+        return direct;
+    }
+    // Whole seconds and printed fraction of each offset, taken from the formatted offset
+    // itself so that an offset which rounds up to the next second (0.9996 at three places)
+    // carries that second rather than losing it.
+    const wholeOffset = new Float64Array(samplesPerRecord);
+    const fractionText = new Array(samplesPerRecord);
+    for (let sample = 0; sample < samplesPerRecord; sample++) {
+        const text = fixed(sample / rate, decimals);
+        const dot = text.indexOf('.');
+        wholeOffset[sample] = dot === -1 ? Number(text) : Number(text.slice(0, dot));
+        fractionText[sample] = dot === -1 ? '' : text.slice(dot);
+    }
+    return (recordStart, sample) => {
+        /*
+          Non-negative only. Appending a fraction to a negative whole part moves the time the
+          wrong way: a record at -5 s and an offset of half a second is -4.5, but "-5" and
+          ".500" concatenate to -5.500. Recording times start at zero, so this is unreachable
+          from a well-formed file — an EDF+ timekeeping TAL is free to carry a negative onset
+          though, and that is enough reason for the fast path to decline it.
+        */
+        if (sample < 0 ||
+            sample >= samplesPerRecord ||
+            !Number.isInteger(recordStart) ||
+            recordStart < 0) {
+            return direct(recordStart, sample);
+        }
+        return `${recordStart + wholeOffset[sample]}${fractionText[sample]}`;
+    };
+}
 //# sourceMappingURL=number.js.map

package/dist/format/number.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.3.7",
+  "version": "0.4.1",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",